Citrus Sinensis ID: 006154
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SAA6 | 657 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.986 | 0.525 | 0.0 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.838 | 0.757 | 0.303 | 6e-78 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.869 | 0.912 | 0.302 | 8e-73 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.887 | 0.767 | 0.285 | 3e-67 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.870 | 0.773 | 0.289 | 8e-67 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.866 | 0.520 | 0.289 | 8e-65 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.863 | 0.620 | 0.279 | 1e-63 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.889 | 0.671 | 0.269 | 3e-62 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.879 | 0.775 | 0.246 | 3e-62 | |
| Q9ZVX5 | 743 | Pentatricopeptide repeat- | no | no | 0.884 | 0.783 | 0.286 | 5e-62 |
| >sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/658 (52%), Positives = 472/658 (71%), Gaps = 10/658 (1%)
Query: 5 FCNCLYKSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVN 64
F + + S L R FHV K+F+NP EDI+F A+C+NLRQR+W L Q + SLTN L++
Sbjct: 2 FGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLIS 61
Query: 65 RVVSEFRKSPKLALEFYTWVGENNRFSHS---LESSCAIVHLLVNWRRFDDALLLMGNLM 121
RV+ EFR SPKLALEFY WV +N + S E+SC ++HLLV RRFDDAL +M NLM
Sbjct: 62 RVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANLM 121
Query: 122 S--ANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179
S +SPL L GL+ SY+ C ++P VFD+LVRACTQ G +GAY+VI++ + +G V
Sbjct: 122 SVEGEKLSPLHVLSGLIRSYQACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCV 181
Query: 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLY 239
S+HA NNF+ L+ +NEI RFWK+YKEM S GYVENVNTFNLVIY+ CKE KL EALS++
Sbjct: 182 SVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVF 241
Query: 240 YRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGF 299
YRMLK G+WPNVV FNM+I+ AC+ GD+ FAL+L KMG+MSG+ V PN+VT+N +INGF
Sbjct: 242 YRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGF 301
Query: 300 CKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359
CK GR++ AE IR M+K+G+DCN RTY L+D Y R GSS+EALRLCDEM +GL+ N
Sbjct: 302 CKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNT 361
Query: 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQ 419
V+YNS ++WLF EGD+EGA+ VL DM K++ D FT +I+ +GLCRNG VK+A + Q
Sbjct: 362 VIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ 421
Query: 420 VLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479
+ E+ +V D +N L+++ + LA A Q+L SM+V+GL D I++GTLIDGY K G
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGK 481
Query: 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539
+E A+++Y+ M K+ K NLVIYNSI+NGL K AA++++ A + + D +TYNTL
Sbjct: 482 LERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAME---IKDIVTYNTL 538
Query: 540 INGYFINGKIAEAFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597
+N G + EA + S+M+ +V+ V +NI+IN LCKFG Y++A+E++K M+
Sbjct: 539 LNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVER 598
Query: 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAE 655
G++PD +TY TL+T FSK+ S E+V+ELHD ++L GV+P Y +I+ PLL ++
Sbjct: 599 GVVPDSITYGTLITSFSKHRSQEKVVELHDYLILQGVTPHEHIYLSIVRPLLDRENGR 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 170/560 (30%), Positives = 298/560 (53%), Gaps = 8/560 (1%)
Query: 90 FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVF 149
F H+ S A++H+LV R DA + ++ + VS LE + L ++ C + +VF
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 168
Query: 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209
D L+R Q A++ L+ KG +VSI A N + LV++ + W +Y+E+
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228
Query: 210 CGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF 269
G NV T N+++ ALCK+ K+E+ + ++ + G++P++V +N +I+ G +E
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 270 ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329
A +L M M G P T+N +ING CK G+ E A+E+ M+++G+ + TY +
Sbjct: 289 AFEL---MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH 389
L+ + G E ++ +M R ++P+ V ++S + G+++ AL + + +
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 390 ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449
+ PD+ Y+IL +G CR G + A L N++L++ D +YN +++ LCK L A
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465
Query: 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGL 509
+L + M R L PD T LIDG+CK GN++ A+++++ MK+ + ++V YN++++G
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525
Query: 510 CKDASLDAAKSLL--QASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567
K +D AK + S+ I L I+Y+ L+N G +AEAF ++ EM + I
Sbjct: 526 GKVGDIDTAKEIWADMVSKEI-LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584
Query: 568 KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627
+ N +I C+ G ++ MI G +PD ++Y TL+ F + + + L
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVK 644
Query: 628 DM--VLSGVSPDNQTYNAII 645
M G+ PD TYN+I+
Sbjct: 645 KMEEEQGGLVPDVFTYNSIL 664
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (703), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 178/589 (30%), Positives = 297/589 (50%), Gaps = 17/589 (2%)
Query: 29 PSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENN 88
P T +I+ +I R +W I+E +A LT SLV+ + K+P LA F + +
Sbjct: 44 PITSEILLESI----RSSQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNFVNHI---D 96
Query: 89 RFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA--NSVSPLEFLEGLLDSYEICKATP 146
+ ++ C + ++ L+ ++++ NS+ L F E +L + +
Sbjct: 97 LYRLDFQTQCLAIAVISKLSSPKPVTQLLKEVVTSRKNSIRNL-FDELVLAHDRLETKST 155
Query: 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKE 206
+FD LVR C Q+ + A + +K KG N+ L+ L +LN I W Y +
Sbjct: 156 ILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYAD 215
Query: 207 MVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266
M NV TFN++I LCKE KL++A M GI P +V +N ++ G
Sbjct: 216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 267 LEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326
+E A + +M P+ T+N I++ C GR A E+ M + G+ + +
Sbjct: 276 IEGARLIISEM---KSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVS 329
Query: 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMI 386
Y LI G + G E A DEMVK+G++P YN+ IH LF E +E A ++ ++
Sbjct: 330 YNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389
Query: 387 DKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446
+K I D TY+IL G C++G K+AF LH++++ + + ++Y LI LC+ N
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449
Query: 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506
A +L ++ +G+ PD++ TL+DG+C GN++ A + + M + P+ V YN ++
Sbjct: 450 EADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509
Query: 507 NGLCKDASLDAAKSLLQASQRIGL-LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565
GLC + + A+ L+ +R G+ D I+YNTLI+GY G AF + EM ++G
Sbjct: 510 RGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFN 569
Query: 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614
+ YN L+ L K + A EL++ M GI+P+ ++ +++ S
Sbjct: 570 PTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 169/591 (28%), Positives = 293/591 (49%), Gaps = 7/591 (1%)
Query: 57 SLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLL 116
+L V RV+ E ++ PKLA +F+ W N F HS+ES C + H+L R + DA +
Sbjct: 105 TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSV 164
Query: 117 MGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKG 176
+ ++ S + + + L + +C VFDAL +G E A K+K
Sbjct: 165 LKEMVL--SKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFR 222
Query: 177 HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEAL 236
+ N L KL + + +K+M+ G V T+N++I +CKE +E A
Sbjct: 223 VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 237 SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCII 296
L+ M G+ P+ V +N +I+ +VG L+ + F +M M + P+ +T+N +I
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE---PDVITYNALI 339
Query: 297 NGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM 356
N FCK G++ E M G+ NV +Y+TL+D + + G ++A++ +M + GL+
Sbjct: 340 NCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV 399
Query: 357 PNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKL 416
PN Y S I G++ A + ++M+ + + TY+ L GLC +K+A +L
Sbjct: 400 PNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEEL 459
Query: 417 HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476
++ ++ + SYN LI+ K+ N+ A +LL+ + RG+ PD++ YGT I G C
Sbjct: 460 FGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCS 519
Query: 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL-LDAIT 535
IE A V MK+ K N +IY ++++ K + LL + + + + +T
Sbjct: 520 LEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Query: 536 YNTLINGYFINGKIAEAFAMFSEMRN-VGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594
+ LI+G N +++A F+ + N G+ N + +I+ LCK + A L + M
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 639
Query: 595 ILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645
+ G++PD YT+L+ K + E + L D M G+ D Y +++
Sbjct: 640 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 169/584 (28%), Positives = 291/584 (49%), Gaps = 11/584 (1%)
Query: 75 KLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSV----SPLE 130
+L L+F+ W +R +LES C ++HL V + A L+ + + S ++
Sbjct: 102 RLVLDFFDWA--RSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQ 159
Query: 131 FLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSH 190
F + L+ +Y+ + P VFD + G A V +K+ G +S+ + N +L+
Sbjct: 160 FFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTR 219
Query: 191 LVK-LNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249
L K + +++E G NV ++N+VI+ +C+ +++EA L M G P
Sbjct: 220 LSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTP 279
Query: 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAE 309
+V+ ++ ++N C+ G+L+ K+++ + VM + PNS + II C++ ++ AE
Sbjct: 280 DVISYSTVVNGYCRFGELD---KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 310 EIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369
E MI+ GI + Y TLIDG+ + G A + EM R + P+ + Y + I
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396
Query: 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA 429
GD+ A + +M K + PD T++ L G C+ G +K AF++HN +++ +
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456
Query: 430 YSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYEN 489
+Y LI+ LCK +L +A +LL M GL P+I TY ++++G CK GNIE AV++
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516
Query: 490 MKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI-TYNTLINGYFINGK 548
+ + V Y ++++ CK +D A+ +L+ GL I T+N L+NG+ ++G
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576
Query: 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTT 608
+ + + + M GIA N +N L+ C + A + K M G+ PD TY
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636
Query: 609 LVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEK 652
LV K + +E L +M G S TY+ +I L K
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 177/612 (28%), Positives = 293/612 (47%), Gaps = 42/612 (6%)
Query: 75 KLALEFYTWVGENNRF--SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFL 132
KLAL+F WV + H ++ C H+LV R +D A ++ L + S F
Sbjct: 51 KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVF- 109
Query: 133 EGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLV 192
L+ +Y +C + P+V+D L+R + G + + ++ + + + G + S++ N L +V
Sbjct: 110 GALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV 169
Query: 193 KLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV 252
K E W KEM+ +V TFN++I LC E E++ L +M KSG P +V
Sbjct: 170 KSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIV 229
Query: 253 CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312
+N +++ C+ G + A++L M D+ + T+N +I+ C+ R+ +
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA---DVCTYNMLIHDLCRSNRIAKGYLLL 286
Query: 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372
M K I N TY TLI+G++ G A +L +EM+ GL PN+V +N+ I +E
Sbjct: 287 RDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISE 346
Query: 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSY 432
G+ + AL + M K + P +Y +L GLC+N A + ++ + +Y
Sbjct: 347 GNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY 406
Query: 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492
+I+ LCK+ L A LL+ M G+ PDI+TY LI+G+CK G + A ++ + +
Sbjct: 407 TGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Query: 493 VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG-LLDAITYNT------------- 538
V PN +IY+++I C+ L A + +A G D T+N
Sbjct: 467 VGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAE 526
Query: 539 ----------------------LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILIN 576
LINGY +G+ +AF++F EM VG Y L+
Sbjct: 527 AEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLK 586
Query: 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636
LCK G ++A + +K + D V Y TL+T K+ + + + L +MV + P
Sbjct: 587 GLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILP 646
Query: 637 DNQTYNAIISPL 648
D+ TY ++IS L
Sbjct: 647 DSYTYTSLISGL 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 177/634 (27%), Positives = 306/634 (48%), Gaps = 66/634 (10%)
Query: 47 KWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVN 106
K L+ M +++ S V+ + S PK AL F W+ +N R+ HS+ S +++ LL+N
Sbjct: 77 KSPSLKSMVSAISPSHVSSLFS-LDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLIN 135
Query: 107 WRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDAL--VRACTQIGATEG 164
N + F LL + K+ +V DAL + C ++ E
Sbjct: 136 -----------------NGYVGVVFKIRLL----MIKSCDSVGDALYVLDLCRKMNKDE- 173
Query: 165 AYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224
+ ++K + + I +N L+ L + + ++Y EM+ N+ T+N ++
Sbjct: 174 ------RFELK-YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVN 226
Query: 225 ALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGV----- 279
CK +EEA +++++G+ P+ + +I CQ DL+ A K+F +M +
Sbjct: 227 GYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR 286
Query: 280 ---------------------------MSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312
M D P T+ +I C R A +
Sbjct: 287 NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLV 346
Query: 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372
M + GI N+ TY LID E+A L +M+++GLMPN + YN+ I+
Sbjct: 347 KEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406
Query: 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSY 432
G +E A+ V+ M + + P+ TY+ L KG C++ V +A + N++LE ++ D +Y
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTY 465
Query: 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492
N LI+ C+S N +A +LLS M RGL+PD TY ++ID CK +E A +++++++
Sbjct: 466 NSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQ 525
Query: 493 VEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS-QRIGLLDAITYNTLINGYFINGKIAE 551
PN+V+Y ++I+G CK +D A +L+ + L +++T+N LI+G +GK+ E
Sbjct: 526 KGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
Query: 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611
A + +M +G+ ILI+ L K G + A + M+ G PD TYTT +
Sbjct: 586 ATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQ 645
Query: 612 RFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645
+ + + ++ M +GVSPD TY+++I
Sbjct: 646 TYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 165/613 (26%), Positives = 302/613 (49%), Gaps = 28/613 (4%)
Query: 50 ILEQMAPSLTNS---LVNRVVSEFRKSPK--LALEFYTWVGENNRFSHSLESSCAIVHLL 104
+L++M S ++ L N + F K K +A +F+ + E N + +++ +L
Sbjct: 225 LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI-EANGLKPDEVTYTSMIGVL 283
Query: 105 VNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEG 164
R D+A+ + +L N P + ++ ++ G +
Sbjct: 284 CKANRLDEAVEMFEHL-EKNRRVPCTY----------------AYNTMIMGYGSAGKFDE 326
Query: 165 AYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224
AY ++++ + KG S+ A+N L+ L K+ ++ K+++EM N++T+N++I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILID 385
Query: 225 ALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS 284
LC+ KL+ A L M K+G++PNV N++++ C+ L+ A +F +M
Sbjct: 386 MLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDY---KV 442
Query: 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEAL 344
P+ +T +I+G K+GRV+ A ++ M+ + N Y +LI + G E+
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
Query: 345 RLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGL 404
++ +M+ + P+ + N+ + +F G+ E + ++ + PD +YSIL GL
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGL 562
Query: 405 CRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI 464
+ G + ++L + E+ V D +YNI+I+ CK + A QLL M +G P +
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622
Query: 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQA 524
+TYG++IDG K ++ A ++E K + N+VIY+S+I+G K +D A +L+
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 682
Query: 525 SQRIGLLDAI-TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583
+ GL + T+N+L++ +I EA F M+ + N+V Y ILIN LCK
Sbjct: 683 LMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRK 742
Query: 584 YQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNA 643
+ +A + M G+ P ++YTT+++ +K + E L D +G PD+ YNA
Sbjct: 743 FNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNA 802
Query: 644 IISPLLGEKSAED 656
+I L A D
Sbjct: 803 MIEGLSNGNRAMD 815
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 154/624 (24%), Positives = 304/624 (48%), Gaps = 45/624 (7%)
Query: 26 FANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVG 85
FA+ ++ ++ L++ ++ L ++ + T + ++ + + L L+F W
Sbjct: 15 FASSPSDSLLADKALTFLKRHPYQ-LHHLSANFTPEAASNLLLKSQNDQALILKFLNWAN 73
Query: 86 ENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA---NSVSPLEFLEGLLDSYEIC 142
+ F+ L C +H+L ++ + A +L ++ + + + L F + L ++Y++C
Sbjct: 74 PHQFFT--LRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVF-KSLQETYDLC 130
Query: 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWK 202
+T +VFD +V++ +++ + A ++ + G + ++N L ++
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKR------ 184
Query: 203 LYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEAC 262
+ + ENV + ML+S + PNV +N++I C
Sbjct: 185 ------NISFAENV----------------------FKEMLESQVSPNVFTYNILIRGFC 216
Query: 263 QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDC 322
G+++ AL LF KM LPN VT+N +I+G+CKL +++ ++ +M G++
Sbjct: 217 FAGNIDVALTLFDKM---ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Query: 323 NVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVL 382
N+ +Y +I+G R G +E + EM +RG + V YN+ I EG+ AL +
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 383 SDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS 442
++M+ + P TY+ L +C+ G + +A + +Q+ + + +Y L++ +
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Query: 443 NNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY 502
+ A ++L M G P ++TY LI+G+C G +E A+ V E+MK+ P++V Y
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 503 NSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN 561
+++++G C+ +D A + + G+ D ITY++LI G+ + EA ++ EM
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEE 621
VG+ ++ Y LIN C G ++A +L M+ G++PD VTY+ L+ +K E
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 622 VIELHDDMVLSGVSPDNQTYNAII 645
L + P + TY+ +I
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLI 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 182/635 (28%), Positives = 300/635 (47%), Gaps = 53/635 (8%)
Query: 72 KSPKLALEFYTWVGENNRFSHSLESSC---AIVHLLVNWRRFDDALLLMGNLMSANSVSP 128
K P+ + F+ W + + +S ++V L++ +F DA L+ + + + S
Sbjct: 53 KKPETLVSFFQWAQTSIPEAFPSDSPLPLISVVRSLLSHHKFADAKSLLVSYIRTSDAS- 111
Query: 129 LEFLEGLLDSYEICKATP--AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNN 186
L LL P A+FD + A G A + QK+ ++ N
Sbjct: 112 LSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNT 171
Query: 187 FLSHLVKLNE---IGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRML 243
L LV+ I +++ +MV G NV TFN+++ C E KLE+AL + RM+
Sbjct: 172 LLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMV 231
Query: 244 ------------------------------------KSGIWPNVVCFNMIINEACQVGDL 267
K+G+ PN V +N ++ C++G L
Sbjct: 232 SEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSL 291
Query: 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTY 327
+ A F+ + +M +VLP+ T+N +ING C G + E+ AM + +V TY
Sbjct: 292 KEA---FQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTY 348
Query: 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387
TLIDG G S EA +L ++M G+ N V +N ++ WL E E + +++D
Sbjct: 349 NTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVD 408
Query: 388 KH-ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446
H PD TY L K + G + A ++ ++ ++ + + + N +++ LCK L
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLD 468
Query: 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506
A LL+S RG I D +TYGTLI G+ + +E A+++++ MKKV+ P + +NS+I
Sbjct: 469 EAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI 528
Query: 507 NGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565
GLC + A GLL D T+N++I GY G++ +AF ++E
Sbjct: 529 GGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFK 588
Query: 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL 625
+ NIL+N LCK G ++A +I + D VTY T+++ F K+ +E +L
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAYDL 647
Query: 626 HDDMVLSGVSPDNQTYNAIISPLL--GEKSAEDQV 658
+M G+ PD TYN+ IS L+ G+ S D++
Sbjct: 648 LSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDEL 682
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | ||||||
| 224113637 | 678 | predicted protein [Populus trichocarpa] | 0.971 | 0.942 | 0.638 | 0.0 | |
| 255554881 | 606 | pentatricopeptide repeat-containing prot | 0.899 | 0.976 | 0.626 | 0.0 | |
| 307136214 | 653 | pentatricopeptide repeat-containing prot | 0.957 | 0.964 | 0.606 | 0.0 | |
| 449488446 | 653 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.927 | 0.934 | 0.591 | 0.0 | |
| 449474629 | 644 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.963 | 0.984 | 0.584 | 0.0 | |
| 297844018 | 657 | pentatricopeptide repeat-containing prot | 0.975 | 0.977 | 0.539 | 0.0 | |
| 15221081 | 657 | pentatricopeptide repeat-containing prot | 0.984 | 0.986 | 0.525 | 0.0 | |
| 359479250 | 746 | PREDICTED: pentatricopeptide repeat-cont | 0.930 | 0.820 | 0.352 | 9e-97 | |
| 147840312 | 850 | hypothetical protein VITISV_001389 [Viti | 0.930 | 0.72 | 0.350 | 5e-96 | |
| 255556189 | 643 | pentatricopeptide repeat-containing prot | 0.904 | 0.925 | 0.333 | 3e-88 |
| >gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa] gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/639 (63%), Positives = 515/639 (80%)
Query: 16 LSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPK 75
L R+FH+GK NP ++D+V RAICVNL+QR+W LE+ SLTN+LV+RVV EFR +P+
Sbjct: 38 LERSFHLGKSILNPISDDVVLRAICVNLKQRRWNFLEKNLASLTNALVSRVVCEFRNTPQ 97
Query: 76 LALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGL 135
L LEFY WVGE HSLE SC+++H+LVN RR+DDAL LMGNLM+ N +SPLE LE L
Sbjct: 98 LVLEFYNWVGEKKSVLHSLEISCSVIHVLVNSRRYDDALSLMGNLMTVNGLSPLEVLEAL 157
Query: 136 LDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN 195
+SY IC++ AVFDALVRACTQIGAT GA +VI+KL+++G V+IHAWNNFLSHL+K+N
Sbjct: 158 NNSYGICESNHAVFDALVRACTQIGATVGACEVIKKLQIEGCWVTIHAWNNFLSHLIKVN 217
Query: 196 EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFN 255
EI RFW +YKEMVS GY+ENVNTFN+V++ALCK+CKL+EALS++YR+LKSGIWPNVV FN
Sbjct: 218 EIHRFWIVYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFN 277
Query: 256 MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAM 315
M+++ AC++GD++ ALKL RKM +MS S+ PNSVT+N +I+GFCK+G + AEE+R M
Sbjct: 278 MMVDGACKMGDMDLALKLVRKMEIMSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEM 337
Query: 316 IKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV 375
+K I+ NVRTYAT+I+GY+R G EEALRLCDEMV+RGL+PN+VVYNS +HWL+ EGDV
Sbjct: 338 MKIDIEPNVRTYATMIEGYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDV 397
Query: 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNIL 435
+GA V +DM DK I D FT SILT+GLCRNG + A K NQVLE +++ DA+S+NIL
Sbjct: 398 DGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNIL 457
Query: 436 INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495
IN+LCKSNN AAA+QLL+ M VRGL+PD++T+GTLIDG+CK GNIE AVQVY+ M K E+
Sbjct: 458 INFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEE 517
Query: 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555
KPNL++YNSIINGLCKD +D A+SL+ QR+GL+D ITYNTLINGYF GK +AF +
Sbjct: 518 KPNLLVYNSIINGLCKDGLVDVARSLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAFKL 577
Query: 556 FSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615
+ M+N GI + YN +I FLCKFGC Q+A+ELM +M+L G++PD +TY TLV +K
Sbjct: 578 STLMQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPDNITYRTLVININK 637
Query: 616 NCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654
NCS EEVIELHD MVL GV PD TY I+SPLL E+SA
Sbjct: 638 NCSAEEVIELHDYMVLKGVVPDKLTYENIVSPLLQEESA 676
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/602 (62%), Positives = 475/602 (78%)
Query: 54 MAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDA 113
M P++T SLV RV+ +F+ SP+LALEF+ WV E HS+ES C ++H+LVN +R+DDA
Sbjct: 1 MLPNMTCSLVGRVICKFQNSPQLALEFHDWVLEKKSVLHSIESCCVVIHVLVNSKRYDDA 60
Query: 114 LLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173
L +MGNLM+ N +SPLE L+ L+ SY+ICK++PAVFDALVR CTQIGATEGAY+VI KL+
Sbjct: 61 LFIMGNLMNVNGISPLEVLDALISSYDICKSSPAVFDALVRTCTQIGATEGAYEVITKLQ 120
Query: 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233
+ G V++HAWNNFLSHL+KLN++ RFWK+YKEMVS GY+ENVNTFNL+IYAL KE +L
Sbjct: 121 LDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLV 180
Query: 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHN 293
EA+S+ YR LK+GIWPNVV FNMII+ A ++G ++ ALKL RKM VMSG SV P+SVT+N
Sbjct: 181 EAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYN 240
Query: 294 CIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR 353
+NGFCK+G + AEE + M+ I+ NVRTYATL+DGY R GS E A RLCDE+V++
Sbjct: 241 SFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEK 300
Query: 354 GLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQA 413
GL+PN+V+YNS IHWL EGD+EGA +LSDMIDK I PD FTYSI+ +GLCRNG + +A
Sbjct: 301 GLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEA 360
Query: 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473
FK +LE +V DA+S+N++INYLC+SNNLA AKQLL++M VRGL+PD++T+GTLID
Sbjct: 361 FKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDR 420
Query: 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533
+CK G +E A+QVYE M K +KPNL+IYNS+ING K+ S D A L+ +R+GL D
Sbjct: 421 HCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLFDV 480
Query: 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593
+TYNTLI+GY GKI +AFA+FSEMRN GI + V YN LIN LCK G QA+ELMK+
Sbjct: 481 VTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKM 540
Query: 594 MILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
M+L G+IPDYVTYT L+T FSK CSPEEVIELHD MVL GV PD QTY ++ PLL E+S
Sbjct: 541 MVLRGLIPDYVTYTILITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMVIPLLQEES 600
Query: 654 AE 655
E
Sbjct: 601 VE 602
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136214|gb|ADN34051.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/636 (60%), Positives = 494/636 (77%)
Query: 18 RAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLA 77
R F GK+ +PSTEDI+++AICVNL+QR+WK LEQ++PSLTNSLV RVV EFR SP+LA
Sbjct: 16 RGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSLVCRVVREFRNSPQLA 75
Query: 78 LEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLD 137
LEFY WV + FSHSLES C +VH+LVN R F+DAL +M +LM N SPLE L GL++
Sbjct: 76 LEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLMLKNGKSPLEVLGGLMN 135
Query: 138 SYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEI 197
SYEIC + PAVFDALVR CTQ+ + EGAYDVI+KL+++G V+IHAWNNFL+ L+KL E
Sbjct: 136 SYEICNSNPAVFDALVRTCTQLKSVEGAYDVIRKLRLEGFWVTIHAWNNFLNLLLKLGET 195
Query: 198 GRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMI 257
+FW +Y EMV+ GY ENVNTFNL+IYALCKECKL EA+S+ Y MLK IWPNVV FNMI
Sbjct: 196 DKFWNMYMEMVASGYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSFNMI 255
Query: 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317
I++A ++G+++ ALKL R V+SG SV PN VT+NCIINGFCK+ R+E A+ + MIK
Sbjct: 256 IDKASKMGEMDLALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNVLAEMIK 315
Query: 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG 377
GID N RTYA LIDGYAR GS + A RLCDEMV+ L+P+ VVYNS I+WL+ EG++E
Sbjct: 316 LGIDSNERTYAPLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEE 375
Query: 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437
A F+LSDMI++ I PD FTYSILTKGLC +G + +A ++H ++E ++V DAY++NILIN
Sbjct: 376 ASFLLSDMINRRILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKDAYTHNILIN 435
Query: 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKP 497
Y+ +S N+A AKQLLSSMIVRG+ PD++TYGTL+ G+CK G IE AVQ+Y+ K + K
Sbjct: 436 YMFQSRNIAGAKQLLSSMIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYDKTVKADGKS 495
Query: 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557
NLV+YNSI++GLCK S+DAA+ L+ Q+ G LD++TYNTL++G+ +NG++ +AFA+F
Sbjct: 496 NLVVYNSILDGLCKQGSIDAARLLVDKLQQNGFLDSVTYNTLLHGFCVNGEVEKAFALFL 555
Query: 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC 617
EM NVG VN V YNI+INFLCK G QQA ELM+ M GI+PD +TYTTL+T F K+
Sbjct: 556 EMINVGSLVNIVSYNIMINFLCKMGLIQQAMELMRAMASQGIVPDLITYTTLITNFVKSY 615
Query: 618 SPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
+ VIELHD MVL G PD QTY +++SP L E +
Sbjct: 616 GSDNVIELHDYMVLKGAVPDRQTYQSLVSPCLQEHT 651
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488446|ref|XP_004158042.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/641 (59%), Positives = 486/641 (75%)
Query: 13 NSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRK 72
+S R FH GK+ +PSTEDI+ +AICVNL+QR+WK LEQ++PSLTNSLV RVV EFR
Sbjct: 11 SSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQVSPSLTNSLVCRVVREFRN 70
Query: 73 SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFL 132
SP+LALEFY WV + FSHSLES C +VH+LVN R F+DAL +M +L+ N SPLE L
Sbjct: 71 SPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILXNGKSPLEVL 130
Query: 133 EGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLV 192
GL++SYEIC + PAVF A VR CTQ+ + EGAYDVI+KL+++G V+IHAWNNFL+ L+
Sbjct: 131 GGLMNSYEICNSNPAVFXARVRTCTQLRSVEGAYDVIRKLRLEGFWVTIHAWNNFLNLLL 190
Query: 193 KLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV 252
KL E +F +YKEM++ GY ENVNTFNL+IYALC ECKL EA+ + Y MLK IWPNVV
Sbjct: 191 KLGETDKFXNMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVV 250
Query: 253 CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312
FNMII++A ++G+++ ALKL R V+SG SV PN V +NCIINGFCK+ R+E A+ +
Sbjct: 251 TFNMIIDKANKMGEMDLALKLTRNTEVISGGSVSPNIVAYNCIINGFCKIRRLESAKNVL 310
Query: 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372
MIK GI N RTYATLIDGYAR GS + A RLCDEMV+ L+P+ VYNS I+WL+ E
Sbjct: 311 GEMIKLGIYFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIYWLYME 370
Query: 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSY 432
G++E A F+LSDMI++ I PD FTYSILTKGLC +G + +A ++H ++E +V DA++Y
Sbjct: 371 GELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRDAFTY 430
Query: 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492
NILINY+ +S N+A AKQLLSSMIV G+ PD++TYGT +DG+CK G IE AVQ+Y+ K
Sbjct: 431 NILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKTVK 490
Query: 493 VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552
+ K NLV+YNSI++GLCK S+ AAK L+ Q+ G LD +TYNTL++G+ +NG+I +A
Sbjct: 491 ADGKSNLVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFLDPVTYNTLLHGFCVNGEIEKA 550
Query: 553 FAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTR 612
FA+F EM NVG VN V YNI+I+FLCK G QQA ELM+ M GIIPD +TYTTL+T
Sbjct: 551 FALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMSSQGIIPDLITYTTLITN 610
Query: 613 FSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
F + C ++VIELHD MVL G PD +TY + +SP L E +
Sbjct: 611 FVEICGSKDVIELHDYMVLKGAVPDRKTYRSFVSPCLQEHT 651
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449474629|ref|XP_004154237.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/643 (58%), Positives = 484/643 (75%), Gaps = 9/643 (1%)
Query: 11 KSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEF 70
+ +S R FH GK+ +PSTEDI+ +AICVNL+QR+WK LEQ++PSLTNSLV RV+ EF
Sbjct: 9 RGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREF 68
Query: 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLE 130
R SP+LALEFY WV + FSHSLES C +VH+LVN R F+DAL +M +L+ N SPLE
Sbjct: 69 RNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILXNGKSPLE 128
Query: 131 FLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSH 190
L GL++SYEIC + PAVF ALVR CTQ+ + EGAYDVI+KL+++G V+IHAWNNFL+
Sbjct: 129 VLGGLMNSYEICNSNPAVFXALVRTCTQLRSVEGAYDVIRKLRLEGFWVTIHAWNNFLNL 188
Query: 191 LVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250
L+KL E +F +YKEM++ GY ENVNTFNL+IYALC ECKL EA+ + Y MLK IWPN
Sbjct: 189 LLKLGETDKFXNMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPN 248
Query: 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310
VV FNMII++A ++G+++ ALKL R + V+SG SV PN V +NCIINGFCK+ R+E A+
Sbjct: 249 VVXFNMIIDKANKMGEMDLALKLTRNIEVISGGSVSPNIVAYNCIINGFCKIRRLESAKN 308
Query: 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF 370
+ MIK GID N RTYATLIDGYAR GS + A RLCDEMV+ L+P+ VYNS I+WL+
Sbjct: 309 VLGEMIKLGIDFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIYWLY 368
Query: 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY 430
EG++E A F+LSDMI++ I PD FTYSILTKGLC +G + +A ++H ++E +V DA+
Sbjct: 369 MEGELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRDAF 428
Query: 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490
+YNILINY+ +S N+A AKQLLSSMIV G+ PD++TYGT +DG+CK G IE AVQ+Y+
Sbjct: 429 TYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKA 488
Query: 491 KKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550
V+YNSI++GLCK S+ AAK L+ Q+ G LD +TYNTL++G+ +NG+I
Sbjct: 489 ---------VVYNSILDGLCKQGSIYAAKLLVDKLQQNGFLDPVTYNTLLHGFCVNGEIE 539
Query: 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610
+AFA+F EM NVG VN V YNI+INFLCK G QQA ELM+ M GIIPD +TYTTL+
Sbjct: 540 KAFALFLEMINVGSLVNIVSYNIMINFLCKMGLIQQAMELMRAMSSQGIIPDLITYTTLI 599
Query: 611 TRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
T F + C E+VIELH M+L G PD +TY + +SP L E +
Sbjct: 600 TNFVETCGSEDVIELHGYMMLKGAVPDRKTYRSFVSPCLQEHT 642
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844018|ref|XP_002889890.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335732|gb|EFH66149.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/652 (53%), Positives = 464/652 (71%), Gaps = 10/652 (1%)
Query: 5 FCNCLYKSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVN 64
F + + S L R FHV K+F+NP EDI+F A+C+NL+QR+W L Q + SLTN L++
Sbjct: 2 FAHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLKQRRWNTLHQFSSSLTNPLIS 61
Query: 65 RVVSEFRKSPKLALEFYTWVGENNRFSHS---LESSCAIVHLLVNWRRFDDALLLMGNLM 121
RV+ +FR SPKLALEFY WV ENN + S E+SC ++HLLV+WRRFDDAL +M NLM
Sbjct: 62 RVLRQFRSSPKLALEFYNWVLENNTVAKSENRFEASCVMIHLLVDWRRFDDALSIMVNLM 121
Query: 122 S--ANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179
S +SPL L GL+ SY+ C ++ VFD+LVRACTQ G +GAY+VI++ + +G V
Sbjct: 122 SVEGEKLSPLHVLSGLIRSYQACGSSLDVFDSLVRACTQNGDAQGAYEVIEQTRTEGFWV 181
Query: 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLY 239
S+HA NNF+ L+ LNEI FW +YKEM S GYVENVNTFNLVIY+ CKE KL EALS++
Sbjct: 182 SVHALNNFMGCLLNLNEIDWFWMVYKEMDSLGYVENVNTFNLVIYSFCKENKLFEALSVF 241
Query: 240 YRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGF 299
YRMLK GIWPNVV FNM+I+ AC+ GD+ FAL+L KMGVMSG+ V PN+VT+N +INGF
Sbjct: 242 YRMLKCGIWPNVVSFNMMIDGACKTGDMRFALQLLGKMGVMSGNFVSPNAVTYNSVINGF 301
Query: 300 CKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359
CK GR++ AE IR M+K G+DCN RTY L+D Y R GSS+EALRLCDEM +GL+ N
Sbjct: 302 CKAGRLDLAERIRGEMVKLGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVANT 361
Query: 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQ 419
V+YNS ++WLF EGD EGA+ VL DM+ K + D FT +I+ +GLCRNG V +A + H Q
Sbjct: 362 VIYNSIVYWLFMEGDTEGAMMVLRDMVRKRMQIDGFTRAIVVRGLCRNGYVAEAVEFHRQ 421
Query: 420 VLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479
+ E+ +V D +N L+++ + L Q+L SM+V GL D I +GTLIDGY K G
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLVCVDQILGSMLVHGLGLDTILFGTLIDGYLKEGK 481
Query: 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539
+E A+ +Y+ M K+ K PNLVIYNSI+NGL K AA++++ A + D +TYNTL
Sbjct: 482 LERAIDIYDGMIKMNKTPNLVIYNSIVNGLSKRGMAGAAEAVVNAMES---KDTVTYNTL 538
Query: 540 INGYFINGKIAEAFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597
+NG G + EA + S M+ +V+ V YNILIN LCKFGCY++A+E++K+M+
Sbjct: 539 LNGSLKIGNVEEADNILSRMQKQDGEKSVSLVTYNILINHLCKFGCYEKAKEVLKIMVER 598
Query: 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649
G++PD +TY TL+T FSKN EEV+ELHD M+L GV+P Y +I+ PLL
Sbjct: 599 GVVPDSITYGTLITSFSKNRGQEEVVELHDYMILQGVTPHEHIYQSIVRPLL 650
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221081|ref|NP_172636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200496|sp|Q9SAA6.1|PPR34_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11710, mitochondrial; Flags: Precursor gi|4835786|gb|AAD30252.1|AC007296_13 F25C20.14 [Arabidopsis thaliana] gi|22655109|gb|AAM98145.1| putative salt-inducible protein [Arabidopsis thaliana] gi|30725498|gb|AAP37771.1| At1g11710 [Arabidopsis thaliana] gi|332190652|gb|AEE28773.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/658 (52%), Positives = 472/658 (71%), Gaps = 10/658 (1%)
Query: 5 FCNCLYKSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVN 64
F + + S L R FHV K+F+NP EDI+F A+C+NLRQR+W L Q + SLTN L++
Sbjct: 2 FGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLIS 61
Query: 65 RVVSEFRKSPKLALEFYTWVGENNRFSHS---LESSCAIVHLLVNWRRFDDALLLMGNLM 121
RV+ EFR SPKLALEFY WV +N + S E+SC ++HLLV RRFDDAL +M NLM
Sbjct: 62 RVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANLM 121
Query: 122 S--ANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179
S +SPL L GL+ SY+ C ++P VFD+LVRACTQ G +GAY+VI++ + +G V
Sbjct: 122 SVEGEKLSPLHVLSGLIRSYQACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCV 181
Query: 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLY 239
S+HA NNF+ L+ +NEI RFWK+YKEM S GYVENVNTFNLVIY+ CKE KL EALS++
Sbjct: 182 SVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVF 241
Query: 240 YRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGF 299
YRMLK G+WPNVV FNM+I+ AC+ GD+ FAL+L KMG+MSG+ V PN+VT+N +INGF
Sbjct: 242 YRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGF 301
Query: 300 CKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359
CK GR++ AE IR M+K+G+DCN RTY L+D Y R GSS+EALRLCDEM +GL+ N
Sbjct: 302 CKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNT 361
Query: 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQ 419
V+YNS ++WLF EGD+EGA+ VL DM K++ D FT +I+ +GLCRNG VK+A + Q
Sbjct: 362 VIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ 421
Query: 420 VLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479
+ E+ +V D +N L+++ + LA A Q+L SM+V+GL D I++GTLIDGY K G
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGK 481
Query: 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539
+E A+++Y+ M K+ K NLVIYNSI+NGL K AA++++ A + + D +TYNTL
Sbjct: 482 LERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAME---IKDIVTYNTL 538
Query: 540 INGYFINGKIAEAFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597
+N G + EA + S+M+ +V+ V +NI+IN LCKFG Y++A+E++K M+
Sbjct: 539 LNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVER 598
Query: 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAE 655
G++PD +TY TL+T FSK+ S E+V+ELHD ++L GV+P Y +I+ PLL ++
Sbjct: 599 GVVPDSITYGTLITSFSKHRSQEKVVELHDYLILQGVTPHEHIYLSIVRPLLDRENGR 656
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 218/619 (35%), Positives = 344/619 (55%), Gaps = 7/619 (1%)
Query: 31 TEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGEN-NR 89
++ + + +NL+Q K L + L + +V V+ + R++ +L F + N
Sbjct: 68 SDSFLTEKVLLNLKQGKLNSLRNLLFRLDSVVVVDVLYKCRENLQLGQRFIDSITSNCPN 127
Query: 90 FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVF 149
F HSL+S A++H+LV RR DA ++ ++ + VS +E +E L+ +Y C + P VF
Sbjct: 128 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVF 187
Query: 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209
D LVR Q + + LK KG VSI+A N+ L LVK+ + W++Y+E+V
Sbjct: 188 DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR 247
Query: 210 CGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF 269
G NV T N++I ALCK K+E S M + G++P+VV +N +IN C+ G LE
Sbjct: 248 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 307
Query: 270 ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329
A +L M MSG + P T+N IING CK G+ A+ + M+K G+ + TY
Sbjct: 308 AFEL---MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 364
Query: 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH 389
L+ R + +A R+ DEM +G++P+ V +++ I L G ++ AL DM +
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 424
Query: 390 ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449
+ PD+ Y+IL G CRNG + +A K+ +++LE+ V D +YN ++N LCK L+ A
Sbjct: 425 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 484
Query: 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGL 509
+L + M RG+ PD T+ TLI+GY K GN+ AV ++E M + KP++V YN++I+G
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544
Query: 510 CKDASLDAAKSLLQ--ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567
CK + ++ L S+RI + I+Y LINGY G ++EAF ++ EM G
Sbjct: 545 CKGSEMEKVNELWNDMISRRI-YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 603
Query: 568 KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627
+ N ++ C+ G +A E + M+L GI+PD +TY TL+ F K + + L +
Sbjct: 604 IITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVN 663
Query: 628 DMVLSGVSPDNQTYNAIIS 646
M SG+ PD TYN I++
Sbjct: 664 KMENSGLLPDVITYNVILN 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 217/619 (35%), Positives = 343/619 (55%), Gaps = 7/619 (1%)
Query: 31 TEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGEN-NR 89
++ + + +NL+Q K L + L + +V V+ + R++ +L F + N
Sbjct: 172 SDSFLTEKVLLNLKQGKLNSLRNLLFRLDSVVVVDVLYKCRENLQLGQRFIDSITSNCPN 231
Query: 90 FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVF 149
F HSL+S A++H+LV RR DA ++ ++ + VS +E +E L+ +Y C + P VF
Sbjct: 232 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVF 291
Query: 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209
D LVR Q + + LK KG VSI+A N+ L LVK+ + W++Y+E+V
Sbjct: 292 DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR 351
Query: 210 CGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF 269
G NV T N++I ALCK K+E S M + G++P+VV +N +IN C+ G LE
Sbjct: 352 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 411
Query: 270 ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329
A +L M MSG + P T+N IING CK G+ A+ + M+K G+ + TY
Sbjct: 412 AFEL---MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 468
Query: 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH 389
L+ R + +A R+ DEM +G++P+ V +++ I L G ++ AL DM +
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528
Query: 390 ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449
+ PD+ Y+IL G CRNG + +A K+ +++LE+ D +YN ++N LCK L+ A
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588
Query: 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGL 509
+L + M RG+ PD T+ TLI+GY K GN+ AV ++E M + KP++V YN++I+G
Sbjct: 589 ELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 648
Query: 510 CKDASLDAAKSLLQ--ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567
CK + ++ L S+RI + I+Y LINGY G ++EAF ++ EM G
Sbjct: 649 CKGSEMEKVNELWNDMISRRI-YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 707
Query: 568 KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627
+ N ++ C+ G +A E + M+L GI+PD +TY TL+ F K + + L +
Sbjct: 708 IITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVN 767
Query: 628 DMVLSGVSPDNQTYNAIIS 646
M SG+ PD TYN I++
Sbjct: 768 KMENSGLLPDVITYNVILN 786
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 202/606 (33%), Positives = 313/606 (51%), Gaps = 11/606 (1%)
Query: 15 PLSRAFHVGKQFANPSTED---IVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFR 71
P+ H N ST+ I +++ +++ +W +++ +AP+L+ SL++ +
Sbjct: 34 PIIDHLHAETLHPNASTDSPLVITHQSLLDSIQSSQWHLIKHLAPNLSPSLISATLLSLH 93
Query: 72 KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLE- 130
K LAL+F T +G +++ C V ++ L L+ + + +
Sbjct: 94 KKSDLALQFVTHIGFKGL---DIKTKCLAVAVVSRSPSPKSTLHLLKQTIESRVAGVKDV 150
Query: 131 FLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSH 190
F E + + + VFD L+RAC ++ + A++ +K KG I +N LS
Sbjct: 151 FHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSL 210
Query: 191 LVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250
+KLN+ W LY EM V TFN++I LCKE KL++A M G+ PN
Sbjct: 211 FLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPN 270
Query: 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310
VV +N +I+ C G +E A + + +M V P+S T+ +I+G CK G++E A
Sbjct: 271 VVTYNTVIHGYCSRGRVEGARMV---LDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASG 327
Query: 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF 370
I M + G+ TY TLIDGY G +A DEMV+R ++P YN IH LF
Sbjct: 328 ILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALF 387
Query: 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY 430
EG ++ A ++ DM D I PD TY+IL G CR G K+AF LH++++ + +
Sbjct: 388 LEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLV 447
Query: 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490
+Y LI L K N + AA L +I G PD+I + LIDG+C GN++ A + + M
Sbjct: 448 TYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM 507
Query: 491 KKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKI 549
K P+ V YN+++ G C++ ++ A+ LL+ +R G+ D I+YNTLI+GY G I
Sbjct: 508 DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDI 567
Query: 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTL 609
+AF + EM ++G + YN LI LCK A EL+K M+ GI PD TY +L
Sbjct: 568 NDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627
Query: 610 VTRFSK 615
+ K
Sbjct: 628 IEGIGK 633
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | ||||||
| TAIR|locus:2027382 | 657 | AT1G11710 "AT1G11710" [Arabido | 0.981 | 0.983 | 0.527 | 1.7e-187 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.960 | 0.866 | 0.292 | 3.9e-76 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.869 | 0.912 | 0.303 | 5.5e-70 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.930 | 0.819 | 0.261 | 7e-70 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.813 | 0.614 | 0.285 | 3.1e-64 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.890 | 0.640 | 0.282 | 4.6e-62 | |
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.806 | 0.890 | 0.303 | 7.1e-61 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.808 | 0.877 | 0.283 | 2.2e-59 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.810 | 0.846 | 0.285 | 3.5e-59 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.761 | 0.777 | 0.278 | 7.5e-57 |
| TAIR|locus:2027382 AT1G11710 "AT1G11710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1818 (645.0 bits), Expect = 1.7e-187, P = 1.7e-187
Identities = 346/656 (52%), Positives = 472/656 (71%)
Query: 5 FCNCLYKSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVN 64
F + + S L R FHV K+F+NP EDI+F A+C+NLRQR+W L Q + SLTN L++
Sbjct: 2 FGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLIS 61
Query: 65 RVVSEFRKSPKLALEFYTWVGENNRFSHS---LESSCAIVHLLVNWRRFDDALLLMGNLM 121
RV+ EFR SPKLALEFY WV +N + S E+SC ++HLLV RRFDDAL +M NLM
Sbjct: 62 RVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANLM 121
Query: 122 SANS--VSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179
S +SPL L GL+ SY+ C ++P VFD+LVRACTQ G +GAY+VI++ + +G V
Sbjct: 122 SVEGEKLSPLHVLSGLIRSYQACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCV 181
Query: 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLY 239
S+HA NNF+ L+ +NEI RFWK+YKEM S GYVENVNTFNLVIY+ CKE KL EALS++
Sbjct: 182 SVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVF 241
Query: 240 YRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGF 299
YRMLK G+WPNVV FNM+I+ AC+ GD+ FAL+L KMG+MSG+ V PN+VT+N +INGF
Sbjct: 242 YRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGF 301
Query: 300 CKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359
CK GR++ AE IR M+K+G+DCN RTY L+D Y R GSS+EALRLCDEM +GL+ N
Sbjct: 302 CKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNT 361
Query: 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQ 419
V+YNS ++WLF EGD+EGA+ VL DM K++ D FT +I+ +GLCRNG VK+A + Q
Sbjct: 362 VIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ 421
Query: 420 VLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479
+ E+ +V D +N L+++ + LA A Q+L SM+V+GL D I++GTLIDGY K G
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGK 481
Query: 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539
+E A+++Y+ M K+ K NLVIYNSI+NGL K AA++++ A + + D +TYNTL
Sbjct: 482 LERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAME---IKDIVTYNTL 538
Query: 540 INGYFINGKIAEAFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597
+N G + EA + S+M+ +V+ V +NI+IN LCKFG Y++A+E++K M+
Sbjct: 539 LNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVER 598
Query: 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
G++PD +TY TL+T FSK+ S E+V+ELHD ++L GV+P Y +I+ PLL ++
Sbjct: 599 GVVPDSITYGTLITSFSKHRSQEKVVELHDYLILQGVTPHEHIYLSIVRPLLDREN 654
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 189/646 (29%), Positives = 329/646 (50%)
Query: 9 LYKSNSPL---SRAFHVGKQFANPSTED-IVFRAICVNLRQRKWKILEQMAPSLTNSLVN 64
L S+SP+ S + A+ S D + IC +L+Q + + L V
Sbjct: 24 LTTSSSPVFEPSSSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHLI-RLNPLAVV 82
Query: 65 RVVSEFRKSPKLALEFYTWVGEN-NRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA 123
V+ R L F +G + F H+ S A++H+LV R DA + ++
Sbjct: 83 EVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRR 142
Query: 124 NSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHA 183
+ VS LE + L ++ C + +VFD L+R Q A++ L+ KG +VSI A
Sbjct: 143 SGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDA 202
Query: 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRML 243
N + LV++ + W +Y+E+ G NV T N+++ ALCK+ K+E+ + ++
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 244 KSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303
+ G++P++V +N +I+ G +E A +L M M G P T+N +ING CK G
Sbjct: 263 EKGVYPDIVTYNTLISAYSSKGLMEEAFEL---MNAMPGKGFSPGVYTYNTVINGLCKHG 319
Query: 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYN 363
+ E A+E+ M+++G+ + TY +L+ + G E ++ +M R ++P+ V ++
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFS 379
Query: 364 STIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423
S + G+++ AL + + + + PD+ Y+IL +G CR G + A L N++L++
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439
Query: 424 HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGA 483
D +YN +++ LCK L A +L + M R L PD T LIDG+CK GN++ A
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNA 499
Query: 484 VQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLL--QASQRIGLLDAITYNTLIN 541
+++++ MK+ + ++V YN++++G K +D AK + S+ I L I+Y+ L+N
Sbjct: 500 MELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI-LPTPISYSILVN 558
Query: 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP 601
G +AEAF ++ EM + I + N +I C+ G ++ MI G +P
Sbjct: 559 ALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618
Query: 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMV--LSGVSPDNQTYNAII 645
D ++Y TL+ F + + + L M G+ PD TYN+I+
Sbjct: 619 DCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 179/589 (30%), Positives = 297/589 (50%)
Query: 29 PSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENN 88
P T +I+ +I R +W I+E +A LT SLV+ + K+P LA F V +
Sbjct: 44 PITSEILLESI----RSSQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNF---VNHID 96
Query: 89 RFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA--NSVSPLEFLEGLLDSYEICKATP 146
+ ++ C + ++ L+ ++++ NS+ L F E +L + +
Sbjct: 97 LYRLDFQTQCLAIAVISKLSSPKPVTQLLKEVVTSRKNSIRNL-FDELVLAHDRLETKST 155
Query: 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKE 206
+FD LVR C Q+ + A + +K KG N+ L+ L +LN I W Y +
Sbjct: 156 ILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYAD 215
Query: 207 MVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266
M NV TFN++I LCKE KL++A M GI P +V +N ++ G
Sbjct: 216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 267 LEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326
+E A + +M P+ T+N I++ C GR A E+ M + G+ + +
Sbjct: 276 IEGARLIISEM---KSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVS 329
Query: 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMI 386
Y LI G + G E A DEMVK+G++P YN+ IH LF E +E A ++ ++
Sbjct: 330 YNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389
Query: 387 DKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446
+K I D TY+IL G C++G K+AF LH++++ + + ++Y LI LC+ N
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449
Query: 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506
A +L ++ +G+ PD++ TL+DG+C GN++ A + + M + P+ V YN ++
Sbjct: 450 EADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509
Query: 507 NGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565
GLC + + A+ L+ +R G+ D I+YNTLI+GY G AF + EM ++G
Sbjct: 510 RGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFN 569
Query: 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614
+ YN L+ L K + A EL++ M GI+P+ ++ +++ S
Sbjct: 570 PTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 164/626 (26%), Positives = 324/626 (51%)
Query: 26 FANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVG 85
FA+ ++ ++ L++ ++ L ++ + T + ++ + + L L+F W
Sbjct: 15 FASSPSDSLLADKALTFLKRHPYQ-LHHLSANFTPEAASNLLLKSQNDQALILKFLNWAN 73
Query: 86 ENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA---NSVSPLEFLEGLLDSYEIC 142
+ F+ L C +H+L ++ + A +L ++ + + + L F + L ++Y++C
Sbjct: 74 PHQFFT--LRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVF-KSLQETYDLC 130
Query: 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWK 202
+T +VFD +V++ +++ + A ++ + G + ++N L ++ F +
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAE 190
Query: 203 -LYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEA 261
++KEM+ NV T+N++I C ++ AL+L+ +M G PNVV +N +I+
Sbjct: 191 NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Query: 262 CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGID 321
C++ ++ KL R M + G + PN +++N +ING C+ GR++ + M + G
Sbjct: 251 CKLRKIDDGFKLLRSMA-LKG--LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307
Query: 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFV 381
+ TY TLI GY + G+ +AL + EM++ GL P+ + Y S IH + G++ A+
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK 441
L M + +CP+ TY+ L G + G + +A+++ ++ + +YN LIN C
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVI 501
+ + A +L M +GL PD+++Y T++ G+C+ +++ A++V M + KP+ +
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487
Query: 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMR 560
Y+S+I G C+ A L + R+GL D TY LIN Y + G + +A + +EM
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 561 NVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPE 620
G+ + V Y++LIN L K ++A+ L+ + +P VTY TL+ S N +
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS-NIEFK 606
Query: 621 EVIELHDDMVLSGVSPD-NQTYNAII 645
V+ L + G+ + +Q + +++
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESML 632
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-64, Sum P(2) = 3.1e-64
Identities = 155/543 (28%), Positives = 278/543 (51%)
Query: 116 LMGNLMSANSVSP-LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV 174
++G L AN + +E E L + + T A ++ ++ G + AY ++++ +
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYA-YNTMIMGYGSAGKFDEAYSLLERQRA 336
Query: 175 KGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234
KG S+ A+N L+ L K+ ++ K+++EM N++T+N++I LC+ KL+
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDT 395
Query: 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294
A L M K+G++PNV N++++ C+ L+ A +F +M P+ +T
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV---CTPDEITFCS 452
Query: 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRG 354
+I+G K+GRV+ A ++ M+ + N Y +LI + G E+ ++ +M+ +
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN 512
Query: 355 LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414
P+ + N+ + +F G+ E + ++ + PD +YSIL GL + G + +
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETY 572
Query: 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474
+L + E+ V D +YNI+I+ CK + A QLL M +G P ++TYG++IDG
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534
K ++ A ++E K + N+VIY+S+I+G K +D A +L+ + GL +
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNL 692
Query: 535 -TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593
T+N+L++ +I EA F M+ + N+V Y ILIN LCK + +A +
Sbjct: 693 YTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQE 752
Query: 594 MILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653
M G+ P ++YTT+++ +K + E L D +G PD+ YNA+I L
Sbjct: 753 MQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
Query: 654 AED 656
A D
Sbjct: 813 AMD 815
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 4.6e-62, P = 4.6e-62
Identities = 172/608 (28%), Positives = 301/608 (49%)
Query: 51 LEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRF 110
L+ M +++ S V+ + S PK AL F W+ +N R+ HS+ S +++ LL+N +
Sbjct: 81 LKSMVSAISPSHVSSLFS-LDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLIN-NGY 138
Query: 111 DDALLLMGNLM--SANSVSPLEFLEGLL------DSYEI-CKATPAVFDALVRACTQIGA 161
+ + LM S +SV ++ L + +E+ K ++ L+ + + G
Sbjct: 139 VGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGL 198
Query: 162 TEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221
+ V ++ +I+ +N ++ KL + + ++V G + T+
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMS 281
+I C+ L+ A ++ M G N V + +I+ C ++ A+ LF KM
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM---K 315
Query: 282 GDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSE 341
D P T+ +I C R A + M + GI N+ TY LID E
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375
Query: 342 EALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT 401
+A L +M+++GLMPN + YN+ I+ G +E A+ V+ M + + P+ TY+ L
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435
Query: 402 KGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI 461
KG C++ V +A + N++LE ++ D +YN LI+ C+S N +A +LLS M RGL+
Sbjct: 436 KGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSL 521
PD TY ++ID CK +E A +++++++ PN+V+Y ++I+G CK +D A +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 522 LQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580
L+ L +++T+N LI+G +GK+ EA + +M +G+ ILI+ L K
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Query: 581 FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL---SGVSPD 637
G + A + M+ G PD TYTT + + C +++ D M +GVSPD
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY---CREGRLLDAEDMMAKMRENGVSPD 671
Query: 638 NQTYNAII 645
TY+++I
Sbjct: 672 LFTYSSLI 679
|
|
| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 166/547 (30%), Positives = 273/547 (49%)
Query: 32 EDIVFRAICVNLRQRKWK-ILEQMAPS--LTNSLVNRVVSEFRK-----SPKLALEFYTW 83
E ++ ++IC + + WK IL+ S L +++ +V+SE P L+ F+ W
Sbjct: 10 EALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIW 69
Query: 84 VGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSY-EIC 142
HSL+SS ++ +L + F A L+ L +S L L+ E
Sbjct: 70 TDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDP 129
Query: 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWK 202
+ VF L+ + G + V ++++ G + A L+ LVK WK
Sbjct: 130 EDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWK 189
Query: 203 LYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEAC 262
++K+MV G V N++ +N++++A K E+A L M + G++P++ +N +I+ C
Sbjct: 190 IFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYC 249
Query: 263 QVGDLEF-ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGID 321
+ + F AL + +M SG V PN VT+N I+GF + GR+ A + + IK +
Sbjct: 250 KKS-MHFEALSVQDRME-RSG--VAPNIVTYNSFIHGFSREGRMREATRL-FREIKDDVT 304
Query: 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFV 381
N TY TLIDGY R +EALRL + M RG P V YNS + L +G + A +
Sbjct: 305 ANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRL 364
Query: 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK 441
L++M K I PD+ T + L C+ + A K+ +++E + D YSY LI+ CK
Sbjct: 365 LTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCK 424
Query: 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVI 501
L AK+ L SMI +G P TY L+DG+ + ++ E +K ++ +
Sbjct: 425 VLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVAL 484
Query: 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMR 560
Y +I +CK +D AK L ++ ++ GL+ D++ + T+ Y+ GK+ EA A+F M
Sbjct: 485 YRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMY 544
Query: 561 NVGIAVN 567
N + VN
Sbjct: 545 NRRLMVN 551
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 154/544 (28%), Positives = 273/544 (50%)
Query: 38 AICVNLRQRK-WKILEQMAPSLT-NSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLE 95
A+ +L +++ W L + N L +++S P L L +Y+W+ +N+ S SLE
Sbjct: 44 AVIADLIEKQHWSKLGVHVTDINPNELFRQLISS-ELDPDLCLRYYSWLVKNSDISVSLE 102
Query: 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYE-ICKATPAVFDALVR 154
+ ++H L N +R+ + + S + + + + +C + D LV
Sbjct: 103 LTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVC-VNSIIADMLVL 161
Query: 155 ACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVE 214
A E ++ ++ G+ +S + + L+K N +YKEM+
Sbjct: 162 AYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQP 221
Query: 215 NVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLF 274
NV TFN+VI ALCK K+ +A + M G PNVV +N +I+ C++G K
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKAD 281
Query: 275 RKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGY 334
+ M + V PN T N +I+GF K + + ++ M+ + NV +Y +LI+G
Sbjct: 282 AVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGL 341
Query: 335 ARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV-EGALFVLSDMIDKHICPD 393
GG EA+ + D+MV G+ PN + YN+ I+ F + D+ + AL + + + P
Sbjct: 342 CNGGKISEAISMRDKMVSAGVQPNLITYNALING-FCKNDMLKEALDMFGSVKGQGAVPT 400
Query: 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLS 453
Y++L C+ G + F L ++ E +V D +YN LI LC++ N+ AAK+L
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460
Query: 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA 513
+ +GL PD++T+ L++GYC+ G A + + M K+ KP + YN ++ G CK+
Sbjct: 461 QLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEG 519
Query: 514 SLDAAKSL---LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG 570
+L AA ++ ++ +R+ + + +YN L+ GY GK+ +A + +EM G+ N++
Sbjct: 520 NLKAATNMRTQMEKERRLRM-NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578
Query: 571 YNIL 574
Y I+
Sbjct: 579 YEIV 582
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 156/547 (28%), Positives = 274/547 (50%)
Query: 121 MSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATE--GAYDVIQKLKVKGHS 178
+S N +S L+ + + E+ K+ P F +++ + A +DV+ L + +
Sbjct: 52 LSRNGLSELKLDDAVALFGEMVKSRP--FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109
Query: 179 VSI----HAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234
+ I + ++ ++ + +++ + +M+ GY N+ T + ++ C ++ E
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169
Query: 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294
A++L +M +G PN V FN +I+ A+ L +M V G P+ VT+
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM-VAKGCQ--PDLVTYGV 226
Query: 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRG 354
++NG CK G + A + M + ++ V Y T+IDG + ++AL L EM +G
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 355 LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414
+ PN V Y+S I L G A +LSDMI++ I PD FT+S L + G + +A
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346
Query: 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474
KL++++++ + +Y+ LIN C + L AKQ+ M+ + PD++TY TLI G+
Sbjct: 347 KLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 406
Query: 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534
CK +E ++V+ M + N V YN +I GL + D A+ + + G+ I
Sbjct: 407 CKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNI 466
Query: 535 -TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593
TYNTL++G NGK+ +A +F ++ + YNI+I +CK G + +L
Sbjct: 467 MTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 526
Query: 594 MILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL--GE 651
+ L G+ PD V Y T+++ F + S EE L +M G P++ YN +I L G+
Sbjct: 527 LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 586
Query: 652 KSAEDQV 658
+ A ++
Sbjct: 587 REASAEL 593
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 142/509 (27%), Positives = 257/509 (50%)
Query: 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV 208
F+ L A + E + ++++ KG + SI+ + ++ + ++ + +++
Sbjct: 91 FNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIM 150
Query: 209 SCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLE 268
GY + FN ++ LC EC++ EAL L RM++ G P ++ N ++N C G +
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVS 210
Query: 269 FALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYA 328
A+ L +M V +G PN VT+ ++N CK G+ A E+ M + I + Y+
Sbjct: 211 DAVVLIDRM-VETGFQ--PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 329 TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK 388
+IDG + GS + A L +EM +G + + YN+ I G + +L DMI +
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 389 HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAA 448
I P+ T+S+L + G +++A +L ++++ + + +YN LI+ CK N L A
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387
Query: 449 KQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508
Q++ MI +G PDI+T+ LI+GYCK I+ ++++ M N V YN+++ G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447
Query: 509 LCKDASLDAAKSLLQ--ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566
C+ L+ AK L Q S+R+ D ++Y L++G NG++ +A +F ++ + +
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRP-DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL 506
Query: 567 NKVG-YNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL 625
+ +G Y I+I+ +C A +L + L G+ D Y +++ + S + L
Sbjct: 507 D-IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADIL 565
Query: 626 HDDMVLSGVSPDNQTYNAIISPLLGEKSA 654
M G +PD TYN +I LG+ A
Sbjct: 566 FRKMTEEGHAPDELTYNILIRAHLGDDDA 594
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SAA6 | PPR34_ARATH | No assigned EC number | 0.5258 | 0.9848 | 0.9863 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | fgenesh4_pg.C_LG_XI000030 | hypothetical protein (678 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 658 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 4e-33
Identities = 106/413 (25%), Positives = 185/413 (44%), Gaps = 30/413 (7%)
Query: 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFA---LKLFRKMGVMSGDS 284
K CK + A+ +R K P + FNM+++ D++ A L+L ++ G + D
Sbjct: 414 KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADC 472
Query: 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEAL 344
L ++ C K G+V+ E+ + M+ AG++ NV T+ LIDG AR G +A
Sbjct: 473 KLYTTLISTC-----AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 345 RLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMI--DKHICPDHFTYSILTK 402
M + + P+ VV+N+ I G V+ A VL++M I PDH T L K
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 403 GLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP 462
G V +A +++ + E ++ G Y I +N + + A + M +G+ P
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLL 522
D + + L+D G+++ A ++ ++ +K K V Y+S++ + A L
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 523 QASQRIGLLDAI-TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI------ 575
+ + I L + T N LI ++ +A + SEM+ +G+ N + Y+IL+
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 576 -NFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT----RFSKNCSPEEVI 623
+ QA+E GI P+ V + RF K C+ E +
Sbjct: 768 DDADVGLDLLSQAKE-------DGIKPNLVMCRCITGLCLRRFEKACALGEPV 813
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-30
Identities = 101/425 (23%), Positives = 186/425 (43%), Gaps = 31/425 (7%)
Query: 114 LLLMGNLMSANSVSPLEFLE--GLLDS--------YEICKATPAVFDA------------ 151
LL G + + + LE +E GLLD ++ CK AV +A
Sbjct: 380 LLRDGRI--KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437
Query: 152 -----LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKE 206
L+ C +GA V++ ++ G + +S K ++ ++++ E
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 207 MVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266
MV+ G NV+TF +I + ++ +A Y M + P+ V FN +I+ Q G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 267 LEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326
++ A + +M + + P+ +T ++ G+V+ A+E+ + + I
Sbjct: 558 VDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMI 386
Y ++ ++ G + AL + D+M K+G+ P+ V +++ + GD++ A +L D
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 387 DKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446
+ I +YS L K+A +L+ + + + N LI LC+ N L
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506
A ++LS M GL P+ ITY L+ + + + + + K+ KPNLV+ I
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
Query: 507 NGLCK 511
GLC
Sbjct: 797 -GLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-23
Identities = 121/576 (21%), Positives = 217/576 (37%), Gaps = 100/576 (17%)
Query: 148 VFDALVRACT-QIGATEGAYDVIQKLKVKGHSVSIHAW------NNFLSHLVKLNEIGRF 200
+ AL R C + EG +V ++S H N LS V+ E+
Sbjct: 88 AYVALFRLCEWKRAVEEG-------SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHA 140
Query: 201 WKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCF------ 254
W ++ +M ++ ++N+++ K +EAL LY+RML +G+ P+V F
Sbjct: 141 WYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196
Query: 255 -----------------------------NMIINEACQVGDLEFALKLFRKMGV------ 279
N +I + GD+ A +F +M
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256
Query: 280 ----------------------MSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317
M SV P+ +T +I+ LG E+ ++K
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG 377
G +V +LI Y GS EA ++ M + + + + I G +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDK 372
Query: 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437
AL + M ++ PD T + + G + KLH + ++ N LI
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKP 497
K + A ++ ++ + D+I++ ++I G A+ + M + KP
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKP 487
Query: 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGL-LDAITYNTLINGYFINGKIAEAFAMF 556
N V + ++ + +L K + R G+ D N L++ Y G++ A+ F
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 557 -SEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615
S ++V V +NIL+ G A EL M+ G+ PD VT+ +L+ S+
Sbjct: 548 NSHEKDV------VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 616 NCSPEEVIELHDDMVLS-GVSPDNQTYNAIISPLLG 650
+ + +E M ++P+ + Y A + LLG
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHY-ACVVDLLG 636
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 1e-19
Identities = 104/484 (21%), Positives = 180/484 (37%), Gaps = 94/484 (19%)
Query: 151 ALVRACTQI------GATEGAYDVIQKLKVKG-HSVSIHAWNNFLSHLVKLNEIGRFWKL 203
+ V C+QI G A ++ + L+ ++ ++ + + L I +
Sbjct: 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAV 145
Query: 204 YKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263
Y + S G+ + N V+ K L +A L+ M + N+ + II
Sbjct: 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVD 201
Query: 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN 323
G+ A LFR+M D T ++ LG +++ ++K G+ +
Sbjct: 202 AGNYREAFALFREMWEDGSD---AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258
Query: 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383
LID Y++ G E+A + D M ++ V +NS + G E AL +
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 384 DMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN 443
+M D + D FT+SI+ + R L EH
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLA------------LLEH------------------- 343
Query: 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYN 503
AKQ + +I G DI+ L+D Y K G +E A V++ M + NL
Sbjct: 344 ----AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNL---- 391
Query: 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563
I++N LI GY +G+ +A MF M G
Sbjct: 392 ------------------------------ISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 564 IAVNKVGYNILINFLCKF-GCYQQARELMKVMI-LHGIIPDYVTYTTLVTRFSKNCSPEE 621
+A N V + +++ C++ G +Q E+ + M H I P + Y ++ + +E
Sbjct: 422 VAPNHVTFLAVLS-ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 622 VIEL 625
+
Sbjct: 481 AYAM 484
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-15
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511
PD++TY TLIDGYCK G +E A++++ MKK KPN+ Y+ +I+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 4e-15
Identities = 64/342 (18%), Positives = 140/342 (40%), Gaps = 13/342 (3%)
Query: 306 EFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNST 365
E E TY L++ S + + G P+ + N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM 425
+ G + A + +M ++++ ++ + GL G ++AF L ++ E+
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 426 VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQ 485
+ ++ +++ + A +QL ++ G++ D LID Y K G+IE A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL-LDAITYNTLINGYF 544
V++ M + V +NS++ G + A L + G+ +D T++ +I +
Sbjct: 281 VFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV 604
+ A + + G ++ V L++ K+G + AR + M +I
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI---- 392
Query: 605 TYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646
++ L+ + + + +E+ + M+ GV+P++ T+ A++S
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476
D +YN LI+ CK + A +L + M RG+ P++ TY LIDG CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-13
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580
D +TYNTLI+GY GK+ EA +F+EM+ GI N Y+ILI+ LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 76/411 (18%), Positives = 154/411 (37%), Gaps = 89/411 (21%)
Query: 275 RKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGY 334
R G+ S ++ N + C G++E A ++ +M + + + Y L
Sbjct: 37 RSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC 96
Query: 335 ARGGSSEEALRLC----DEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390
+ EE R+C G+ N + + + + G++ A +V M ++
Sbjct: 97 EWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF----GELVHAWYVFGKMPER-- 150
Query: 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSY------------------ 432
D F++++L G + G +A L++++L + D Y++
Sbjct: 151 --DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208
Query: 433 -----------------NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475
N LI K ++ +A+ + M R D I++ +I GY
Sbjct: 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYF 264
Query: 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAIT 535
+ G ++++ M+++ P+L+ S+I+ LL
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISA-------------------CELLGDER 305
Query: 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595
++GY + G AV+ N LI G + +A ++ M
Sbjct: 306 LGREMHGYVVK---------------TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 596 LHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646
D V++T +++ + KN P++ +E + M VSPD T +++S
Sbjct: 351 TK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 6e-12
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 357 PNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406
P+ V YN+ I +G VE AL + ++M + I P+ +TYSIL GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 8e-12
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 287 PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR 336
P+ VT+N +I+G+CK G+VE A ++ M K GI NV TY+ LIDG +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK 301
P+VV +N +I+ C+ G +E ALKLF +M G + PN T++ +I+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRG--IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 323 NVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369
+V TY TLIDGY + G EEAL+L +EM KRG+ PN Y+ I L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK 441
PD TY+ L G C+ G V++A KL N++ + + + Y+Y+ILI+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMK 491
+GL PD++TY TLIDG C+ G ++ AV++ + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 569 VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615
V YN LI+ CK G ++A +L M GI P+ TY+ L+ K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 215 NVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263
+V T+N +I CK+ K+EEAL L+ M K GI PNV ++++I+ C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646
PD VTY TL+ + K EE ++L ++M G+ P+ TY+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 532 DAITYNTLINGYFINGKIAEAFAMFSEMR 560
D +TYNTLI+G G++ EA + EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 86/440 (19%), Positives = 171/440 (38%), Gaps = 58/440 (13%)
Query: 202 KLYKEM----VSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMI 257
+L +EM V G+ +V+ N +I EA ++ RM + V + +
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAM 360
Query: 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317
I+ + G + AL+ + M D+V P+ +T +++ LG ++ ++ +
Sbjct: 361 ISGYEKNGLPDKALETYALMEQ---DNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVV-YNSTIHWLFAEGDV 375
G+ V LI+ Y++ ++AL E+ +P +V+ + S I L
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKAL----EVFHN--IPEKDVISWTSIIAGLRLNNRC 471
Query: 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY----- 430
AL M+ + P+ T R G + ++H VL + D +
Sbjct: 472 FEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530
Query: 431 -------------------------SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII 465
S+NIL+ + A +L + M+ G+ PD +
Sbjct: 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 466 TYGTLIDGYCKGGNIEGAVQVYENMK-KVEKKPNLVIYNSIINGLCKDASLDAAKSLLQA 524
T+ +L+ + G + ++ + +M+ K PNL Y +++ L + L A + +
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI-- 648
Query: 525 SQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI-NFLCKFG 582
++ + D + L+N I+ + + + N VGY IL+ N G
Sbjct: 649 -NKMPITPDPAVWGALLNACRIHRHV--ELGELAAQHIFELDPNSVGYYILLCNLYADAG 705
Query: 583 CYQQARELMKVMILHGIIPD 602
+ + + K M +G+ D
Sbjct: 706 KWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 245 SGIWPNVVCFNMIINEACQVGDLEFALKLFRKM 277
G+ P+VV +N +I+ C+ G ++ A++L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD--AIT 535
++E + V K Y N L +D + LL+ ++ GLLD I
Sbjct: 349 SDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY 408
Query: 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595
+ + EAF +RN ++ +N+L++ A +++++
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLST----FNMLMSVCASSQDIDGALRVLRLVQ 464
Query: 596 LHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645
G+ D YTTL++ +K+ + + E+ +MV +GV + T+ A+I
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 388 KHICPDHFTYSILTKGLCRNGCVKQAFKLHNQ 419
K + PD TY+ L GLCR G V +A +L ++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228
+ +N + K ++ KL+ EM G NV T++++I LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 285 VLPNSVTHNCIINGFCKLGRVEFAEEI 311
+ P+ VT+N +I+G C+ GRV+ A E+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567
+TYNTLI+G G++ EA +F EM+ GI +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 325 RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN 358
TY TLIDG + G EEAL L EM +RG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGI 564
+TYN+LI+GY GK+ EA +F EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 430 YSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI 464
+YN LI+ LCK+ + A +L M RG+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 319 GIDCNVRTYATLIDGYARGGSSEEALRLCDEMV 351
G+ +V TY TLIDG R G +EA+ L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN 498
+TY TLIDG CK G +E A+++++ MK+ +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 218 TFNLVIYALCKECKLEEALSLYYRMLKSGI 247
T+N +I LCK ++EEAL L+ M + GI
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 496 KPNLVIYNSIINGLCKDASLDAAKSLL 522
KP++V YN++I+GLC+ +D A LL
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 465 ITYGTLIDGYCKGGNIEGAVQVYENMKK 492
+TY +LI GYCK G +E A+++++ MK+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 326 TYATLIDGYARGGSSEEALRLCDEMVKRGL 355
TY +LI GY + G EEAL L EM ++G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357
+ TY L+ A+ G + AL + +EM GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNV 324
VT+N +I+G CK GRVE A E+ M + GI+ +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 218 TFNLVIYALCKECKLEEALSLYYRMLKSGI 247
T+N +I CK KLEEAL L+ M + G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP 462
+YN L+ L K+ + A +L M GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPD 637
VTY TL+ K EE +EL +M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 428 DAYSYNILINYLCKSNNLAAAKQLLSSM 455
D +YN LI+ LC++ + A +LL M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGI 320
VT+N +I+G+CK G++E A E+ M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 563 GIAVNKVGYNILINFLCKFGCYQQARELMKVM 594
G+ + V YN LI+ LC+ G +A EL+ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 571 YNILINFLCKFGCYQQARELMKVMILHGIIPD 602
YN LI+ LCK G ++A EL K M GI PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249
T+N ++ AL K + AL++ M SG+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.79 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.74 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.69 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.53 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.6 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.94 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.89 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.65 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.32 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.09 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.01 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.97 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.72 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.47 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.12 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.98 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.58 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.32 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.11 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.15 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.64 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.44 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.89 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.02 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.92 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.78 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.53 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.42 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.39 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.2 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.13 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 88.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.74 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.74 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.45 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.21 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.2 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.19 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.97 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 85.77 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 85.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.38 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.11 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.46 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.31 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.18 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.79 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.58 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 81.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.56 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.29 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=595.89 Aligned_cols=537 Identities=18% Similarity=0.246 Sum_probs=485.6
Q ss_pred HHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVR 154 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 154 (658)
..++...++... -.++...|..+...+++.|++++|.++|++|.+. +..+++...+..++.
T Consensus 354 ~~~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~----------------gvv~~~~v~~~~li~ 414 (1060)
T PLN03218 354 ENSLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR----------------GLLDMDKIYHAKFFK 414 (1060)
T ss_pred hhhHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC----------------CCCCchHHHHHHHHH
Confidence 344555554432 2345667888888999999999999999999874 123456777888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006154 155 ACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234 (658)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 234 (658)
.|.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 99999999999999998875 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~---M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 78888999999999999999999999999999999
Q ss_pred HHH--cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 315 MIK--AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 315 ~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 568 M~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 976 578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
|..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.||.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHH----c-
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFI----N- 546 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~- 546 (658)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|.. +..+|+.++..|.+ .
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999987 89999998865432 1
Q ss_pred ------------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006154 547 ------------------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTT 608 (658)
Q Consensus 547 ------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 608 (658)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~ 887 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST 887 (1060)
T ss_pred hhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH
Confidence 22467999999999999999999999999999899999999999999998889999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006154 609 LVTRFSKNCSPEEVIELHDDMVLSGVSPDNQ 639 (658)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 639 (658)
+|.++++. .++|..++++|.+.|+.|+..
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99998542 468999999999999999985
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=619.41 Aligned_cols=542 Identities=20% Similarity=0.266 Sum_probs=351.1
Q ss_pred ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHH
Q 006154 73 SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDAL 152 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 152 (658)
....|..++..+.+. +..++...++.++..+++.|+++.|+.+|++|. +++..+|+.+
T Consensus 101 ~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---------------------~~d~~~~n~l 158 (857)
T PLN03077 101 AVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---------------------ERDLFSWNVL 158 (857)
T ss_pred CHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---------------------CCCeeEHHHH
Confidence 344555555554432 334445555555555555555555555555543 3456677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
+.+|++.|++++|+++|++|...|+.||..+|+.++.++.+.+++..+.+++..|.+.|+.||..++++++.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 312 (658)
++|.++|++|. .||..+||++|.+|++.|++++|+++|++ |...|+.||..||+.++.+|++.|+++.|.+++
T Consensus 239 ~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~---M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 239 VSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT---MRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH---HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 77777777765 35667777777777777777777777777 566667777777777777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 777777777777777777777777777777777777765 2566677777777777777777777777777777777
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
|..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA 463 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766654 35566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--------------------- 531 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------------- 531 (658)
+|++.|+.++|+.+|++|.+ +..||..+|+.++.+|++.|+++.+.+++..+.+.+..
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 66666666666666666654 35666666665555555555555555555555544443
Q ss_pred ----------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCC
Q 006154 532 ----------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI-LHGII 600 (658)
Q Consensus 532 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~ 600 (658)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555555555555555555555555555555555555555555 34555
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCC
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAE 655 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 655 (658)
|+..+|+.++.+|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 555555555555555555555555555552 4555555555555555544443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=611.22 Aligned_cols=556 Identities=18% Similarity=0.195 Sum_probs=515.4
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhc-----------
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSY----------- 139 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------- 139 (658)
.++...|++.|..+. +++..+|+.++..+++.|++++|..+|++|...+..+...-|..++...
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 357889999999886 4678899999999999999999999999998753222222222222111
Q ss_pred -------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006154 140 -------EICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY 212 (658)
Q Consensus 140 -------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 212 (658)
.+..+++.+++.|+.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 25678899999999999999999999999999964 5889999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |. .||..+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~---m~----~~d~~s~ 357 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR---ME----TKDAVSW 357 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh---CC----CCCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 54 3689999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|+.+.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999975 5889999999999999999999999999986 58999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL- 531 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 531 (658)
..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|..
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 579999999999999999999999999999999887
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMR-NVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
|..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl 664 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHH
Confidence 99999999999999999999999999998 68999999999999999999999999999999984 789999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCCCcC
Q 006154 611 TRFSKNCSPEEVIELHDDMVLSGVSPD-NQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a 657 (658)
.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|+..|++++|
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 999999999999999999887 5665 46777788999999999986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=583.29 Aligned_cols=502 Identities=16% Similarity=0.265 Sum_probs=480.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH-SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..++...|..++..+++.|++++|.++|++|.+.|+ .++...++.++..|.+.|..++|..+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445677888999999999999999999999999986 46778888999999999999999999999974 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+.+|.+|+
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e---M~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE---MVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 788899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK--RGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 67899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHH
Q 006154 459 GLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYN 537 (658)
Q Consensus 459 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 537 (658)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++|++|...+.. |..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----F-------------------GCYQQARELMKVM 594 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 594 (658)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876432 1 2246899999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 595 ILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 595 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++||+++++
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999999999999899999999999999999988999999999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-63 Score=532.07 Aligned_cols=471 Identities=19% Similarity=0.273 Sum_probs=450.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKG-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
+...|+.++..|.+.|++++|+++|+.|...+ +.|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44579999999999999999999999999865 78999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++ |...|+.|+..+|+.++.++++.|
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~---M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFRE---MWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHH---HHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999996 47999999999999999999999999999 788899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 383 (658)
..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 599999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006154 384 DMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD 463 (658)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 463 (658)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999965 69
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC-CHhhHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI-GLL-DAITYNTLIN 541 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~ 541 (658)
..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+. +.. +..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 554 8899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPE 620 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 620 (658)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..++..|++.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998876 4689999999999999999999999999999975 4554 679999999999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 006154 621 EVIELHDDMVLSGVS 635 (658)
Q Consensus 621 ~A~~~~~~m~~~g~~ 635 (658)
+|.+++++|.++|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=530.04 Aligned_cols=515 Identities=19% Similarity=0.243 Sum_probs=469.4
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
..+..+++.++..+.+.|++++|..+|+.+... .+..++..+|+.++.+|.+.++++.|.+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~----------------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~ 147 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG----------------CPFTLPASTYDALVEACIALKSIRCVKAVYW 147 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc----------------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345558999999999999999999999988753 1356788999999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 250 (658)
.|.+.|+.||+.+||.++.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 148 ~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 8999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 006154 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATL 330 (658)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 330 (658)
..+|+.++.+++..|+.+.+.+++.. +...|+.||..+|+.++.+|++.|++++|.++|++|. ++|+.+|+++
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~---~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~l 296 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCC---VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHH---HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHH
Confidence 99999999999999999999999999 7888999999999999999999999999999999997 6799999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006154 331 IDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV 410 (658)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (658)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
++|.++|++|.+ ||..+||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|
T Consensus 377 ~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 377 EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999964 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 006154 491 KK-VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV 569 (658)
Q Consensus 491 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 569 (658)
.+ .|+.|+..+|+.++++|++.|++++|.++++++. ..++..+|+.|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~ 529 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN 529 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence 86 6999999999999999999999999999998652 22388899999999999999999999999998653 23577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH-------HHHHHh----CCChHHHHHHHHHHHHCCCCCC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILHGIIPDY-VTYTTL-------VTRFSK----NCSPEEVIELHDDMVLSGVSPD 637 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l-------~~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 637 (658)
+|..|++.|++.|++++|.+++++|.+.|+...+ .+|..+ +.+-.. ..-++...++..+|.+.|+.||
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999985332 233211 110000 1124556778888999999998
Q ss_pred HH
Q 006154 638 NQ 639 (658)
Q Consensus 638 ~~ 639 (658)
..
T Consensus 610 ~~ 611 (697)
T PLN03081 610 EN 611 (697)
T ss_pred cc
Confidence 53
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.17 Aligned_cols=566 Identities=13% Similarity=0.066 Sum_probs=453.2
Q ss_pred hcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCh-------------------H
Q 006154 69 EFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSP-------------------L 129 (658)
Q Consensus 69 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-------------------~ 129 (658)
...++++.|...|..+.... +.+...+..++.++.+.|++++|...++.+.......+ .
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 33456777777777776543 44555666677777777777777777776665321111 1
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 130 EFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
+.|..... ..|.+...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|++++|..+++++..
T Consensus 384 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 384 EYLAKATE---LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHh---cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11111111 34556667777777777788888888888777766433 334555667777788888888888888876
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCCh
Q 006154 210 CGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNS 289 (658)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 289 (658)
. .+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++ ... .+.+.
T Consensus 460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~-~~~~~ 533 (899)
T TIGR02917 460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKV---LTI-DPKNL 533 (899)
T ss_pred h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CcCcH
Confidence 4 345677888888888888999999999988887533 24557777888888889999999999884 332 23467
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 369 (658)
.++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.+.. ..+...|..+..++
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 788888889999999999999999988775 5677788888999999999999999999988754 34677899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..++..+...|++++|.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 336677888889999999999999999999887544 6788899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
++++.+.+.+ +.+...+..+...+...|++++|...|+.+.+.. |+..++..++..+...|++++|.+.++.+.+..
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 3467788888899999999999999999998864 455777889999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTL 609 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 609 (658)
+.+...+..++..|...|++++|...|+++.+.. +++...++.++..+...|+ .+|+..++++.... +.+..++..+
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~ 843 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTL 843 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 8899999999999999999999999999999875 5678889999999999999 88999999998763 3356677888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 610 VTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
...+...|++++|.+.++++.+.+. .+..++..+...+.+.|+.++|
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999999999753 3889999999999999999887
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=319.88 Aligned_cols=567 Identities=14% Similarity=0.054 Sum_probs=305.0
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCh----------------HHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSP----------------LEFLEG 134 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ 134 (658)
.++++.|+..|..+.... +.....+..++.++...|++++|...++.+++.....+ .+....
T Consensus 274 ~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666665432 22233445556666666777777777766655311110 000000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCc
Q 006154 135 LLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVE 214 (658)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 214 (658)
+-......+.++..+..+...+.+.|++++|.++|+++.+..+ .+...+..+...+...|++++|.+.++++.+.+. .
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-E 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-c
Confidence 0011112233444555555555555555555555555554422 1344444555555555555555555555554321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 215 NVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 215 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
.......++..+.+.|++++|.++++++.... +++..++..+...+...|++++|.+.|+++ ... .+.+...+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---~~~-~~~~~~~~~~ 504 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKA---LSI-EPDFFPAAAN 504 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHH---Hhh-CCCcHHHHHH
Confidence 22333344445555555555555555555432 224445555555555666666666666552 221 1223344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++...+. .+...+..++..+.+.|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCC
Confidence 5555556666666666666655543 34455555555666666666666666666554432 234445555556666666
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
+++|..+++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+. +...+..+...+.+.|++++|...+++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666655432 234555566666666666666666666666554322 444555566666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+....+.+ .
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 55542 2235555556666666666666666666665543 2345555555666666666666666666666555443 4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
.+..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44555666666666666666666665542 3345556666666666666666666666666542 334555666666666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 615 KNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
+.|+ ++|+.+++++.+. .+-+..++..+...+...|++++|
T Consensus 816 ~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred hcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 6666 5566666666653 122334555666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-25 Score=254.34 Aligned_cols=566 Identities=12% Similarity=-0.008 Sum_probs=353.1
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChH-HHHHHHHhhccCCCCCHHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPL-EFLEGLLDSYEICKATPAV 148 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 148 (658)
..++++.|.+.+..+.... +.+++.+..++.++.+.|+.++|.+.++++.+....++. ..+...+. ...++...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~---~~~~~~~~ 114 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML---LSTPEGRQ 114 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH---hcCCchhh
Confidence 3568999999999888655 567889999999999999999999999999885322221 11111111 12233344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
...+.+.+.+.|++++|.+.|+.+.+.+.. +.. ....+.......|+.++|++.++++.+.. +.+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 566777899999999999999999886433 322 22222222334689999999999999874 456778888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC------------------CCh-hhHH---------------------------------
Q 006154 228 KECKLEEALSLYYRMLKSGIW------------------PNV-VCFN--------------------------------- 255 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~------------------p~~-~~~~--------------------------------- 255 (658)
..|+.++|++.++++...... +.. ..+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999988653210 000 0000
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhH------
Q 006154 256 -MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDC-NVRTY------ 327 (658)
Q Consensus 256 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------ 327 (658)
.....+...|++++|+..|++. ... -+.+...+..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~a---L~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQA---VRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1122344556667777666663 221 12245566666666667777777777776666543111 11111
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 328 ------ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT 401 (658)
Q Consensus 328 ------~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 401 (658)
......+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.... +...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 1123345566677777777776666532 23445556666666677777777777766654322 333444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEEHMV--------GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
..+. .++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+... -+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4332 22334443333322111000 0011122334445556666666666666665432 134445555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHH--------------------------------------------HHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYN--------------------------------------------SIINGL 509 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~ 509 (658)
|.+.|++++|...++++.+.... +...+. .+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 66666666666666666553221 222221 223344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 510 CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
...|+.++|..+++ ..+.++..+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|++
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55566666666555 344567778888999999999999999999998864 4467788899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHhhcCCCCCcC
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGV--SP---DNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a 657 (658)
.++...... +.+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999887642 23455667778888899999999999999987521 22 224566667778888887766
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-25 Score=250.03 Aligned_cols=548 Identities=13% Similarity=0.064 Sum_probs=407.0
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCC--hHHHHHHHHhhccCCCCCHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVS--PLEFLEGLLDSYEICKATPA 147 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 147 (658)
....++.|++.++.+.... +.++..+..++.++...|++++|...++++....... ....+...+......+....
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3467888899888887654 5567788889999999999999999999887642211 11222222222222233334
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.+...+..+-.....+.|...+.........|.... ......+...|++++|+..|++.++.. +.+...+..+...+.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444444444444556677777777655433333322 234567788999999999999999864 447888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPN-VVCF------------NMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
+.|++++|+..|++..+...... ...+ ......+.+.|++++|+..|+++ ... .+.+...+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A---l~~-~P~~~~a~~~ 390 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA---RQV-DNTDSYAVLG 390 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHH
Confidence 99999999999999987643221 1112 12244667899999999999994 332 2235667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------CcHhHHHHHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM--------PNNVVYNSTI 366 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--------p~~~~~~~ll 366 (658)
+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+...... .....+..+.
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999875 455667777777774 56789999888765432100 0122455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 006154 367 HWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446 (658)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (658)
..+...|++++|+..+++.++..+. +...+..+...+.+.|++++|...++++.+..+. +...+..+...+...++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 7888999999999999999986443 5677788899999999999999999999886544 5555556666778899999
Q ss_pred HHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 447 AAKQLLSSMIVRGLIPDII---------TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
+|...++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999998765432222221 123445678889999999999872 34566777889999999999999
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|...++.+.+..|.+..++..++..|...|++++|++.++...+.. +.+..++..+..++...|++++|.++++++...
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888752 334566777888999999999999999999875
Q ss_pred CC--CC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCC
Q 006154 598 GI--IP---DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS-GVS 635 (658)
Q Consensus 598 g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~ 635 (658)
.. .| +...+..+...+...|++++|+..|++.+.. |+.
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 32 12 2245666778899999999999999998753 443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-21 Score=205.31 Aligned_cols=558 Identities=13% Similarity=0.020 Sum_probs=249.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCC---------------CC
Q 006154 63 VNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANS---------------VS 127 (658)
Q Consensus 63 ~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~---------------~~ 127 (658)
....+...+++++.|+..|+.+.+.. |.++.++..++.++...|++++|+..+++.++... ..
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~k 126 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVK 126 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChh
Confidence 33445555689999999999998766 66688999999999999999999999999887411 01
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCccCHHhHHHH-HHHHHhcCCHh
Q 006154 128 PLEFLEGLLDSYEICKATPAVFDALVRA--------CTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF-LSHLVKLNEIG 198 (658)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~ 198 (658)
...+++.++.. .|.++.++..+... |.+. ++|.+.++ .....+.|.+.+.... ...|.+.|+++
T Consensus 127 A~~~ye~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 127 SVTTVEELLAQ---QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred HHHHHHHHHHh---CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 12333333332 23333444444333 3333 22222222 2222222223322222 45555555555
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 199 RFWKLYKEMVSCGYVENVNTFNLVIYALCK-ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
+|+.+++++.+.+ +.+......+..+|.. .++ +++..+++.. ++-+...+..+...|.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5555555555543 2233334444444444 233 4444443321 1124445555555555555555555555552
Q ss_pred cccccCCc-CCChhhHHHHH------------------------------HHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 278 GVMSGDSV-LPNSVTHNCII------------------------------NGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326 (658)
Q Consensus 278 ~~~~~~~~-~~~~~~~~~li------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 326 (658)
...-. .|...+|.-++ ..+.+.+.++.++++.. +.|....
T Consensus 274 ---~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 344 (987)
T PRK09782 274 ---KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM 344 (987)
T ss_pred ---cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH
Confidence 21111 12222222111 11112222222211100 0111110
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHH
Q 006154 327 YATLIDGYA--RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK-H-ICPDHFTYSILTK 402 (658)
Q Consensus 327 ~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~ 402 (658)
..++... ..+...++...+..|.+.. .-+......+.-...+.|+.++|..+++..... + ..++.....-++.
T Consensus 345 --~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 345 --LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred --HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 0110000 0112222222222222210 002222222222334455556666655555441 1 1122223334444
Q ss_pred HHHhcCC---hHHHHHH----------------------HHHHHHc-CC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 403 GLCRNGC---VKQAFKL----------------------HNQVLEE-HM-VG--DAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 403 ~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
.|.+.+. ..++..+ .+..... +. ++ +...|..+..++.. ++.++|...+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 4444433 1111111 1111110 00 11 33444444444444 45555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 533 (658)
+..... |+......+...+...|++++|...|+++... +|+...+..+...+...|+.++|...++...+..+...
T Consensus 501 ~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 501 QAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 444432 33322222233334555555555555554432 22333334444455555555555555555555544433
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..... +.+...+..+...+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33333333333445555555555555553 3445555555555555555555555555555531 22334444455555
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCCCcC
Q 006154 614 SKNCSPEEVIELHDDMVLSGVSP-DNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 657 (658)
...|++++|+..+++..+. .| +...+..+..++...|+.++|
T Consensus 654 ~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555542 23 334555555555555555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-23 Score=197.64 Aligned_cols=445 Identities=17% Similarity=0.144 Sum_probs=355.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
....+++-+-+.|++.+|++....+-. ..+.+......+-..+.+..+++....--....+.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~------------------~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQ------------------EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhc------------------cCCCcccceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 366788888899999999887765554 34445555555666677767776665555444444
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCF- 254 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~- 254 (658)
. +.-..+|..+..++...|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+....
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~ 187 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCAR 187 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhh
Confidence 2 3356788889999999999999999999999864 335778888899999999999999999888875 5665543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 006154 255 NMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDG 333 (658)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 333 (658)
..+...+-..|++++|...+.+. .. ..|. .+.|+.|...+-..|+...|+.-|++..+.+ +.-...|-.|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkA---i~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKA---IE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNV 261 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHH---Hh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHH
Confidence 33444455679999998888873 32 2233 5778889999999999999999999998774 4446788899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMP-NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ 412 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (658)
|...+.+++|...|.+.... .| ....+..+...|..+|.++-|++.|++.++..+. =...|+.|..++-..|++.+
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHH
Confidence 99999999999999888776 34 4567777888899999999999999999885332 35689999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMK 491 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 491 (658)
|.+.+.+.+...+. ...+.+.|...+...|.+++|..+|....+- .|. ...++.|...|.+.|++++|+..|++.+
T Consensus 339 a~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 339 AVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999887654 5677888999999999999999999988874 333 5677889999999999999999999998
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hH
Q 006154 492 KVEKKPN-LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KV 569 (658)
Q Consensus 492 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 569 (658)
+ +.|+ ...|+.+...|...|+.+.|...+.++...+|.-..+++.|...|-..|+..+|++-|++.++ +.|| ..
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 8 4555 457889999999999999999999999999998899999999999999999999999999998 4566 44
Q ss_pred HHHHHHHHH
Q 006154 570 GYNILINFL 578 (658)
Q Consensus 570 ~~~~l~~~~ 578 (658)
.|..++.++
T Consensus 492 A~cNllh~l 500 (966)
T KOG4626|consen 492 AYCNLLHCL 500 (966)
T ss_pred hhhHHHHHH
Confidence 555555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-22 Score=194.54 Aligned_cols=446 Identities=16% Similarity=0.098 Sum_probs=361.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
....|..-..+.|++.+|++.-...-..+.. +......+-.++....+.+....--...++. .+.-..+|..+.+.+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3566777888999999999988777665432 3333334445566666666655544444443 2445778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH-HHHHHHHHhcCChH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH-NCIINGFCKLGRVE 306 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~ 306 (658)
..|++++|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+. .. +.|+.... +.+...+-..|+++
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~a---lq--lnP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEA---LQ--LNPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHH---Hh--cCcchhhhhcchhHHHHhhcccc
Confidence 999999999999999987433 5779999999999999999999999883 33 45554433 34445555689999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 307 FAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIHWLFAEGDVEGALFVLSDM 385 (658)
Q Consensus 307 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 385 (658)
+|...+.+..+.. +-=...|+.|.-.+-.+|+...|+..|++..+. .|+ ...|-.|...|...+.+++|+..|.+.
T Consensus 202 ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 202 EAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 9999999988773 334678899999999999999999999999887 444 457889999999999999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006154 386 IDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII 465 (658)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 465 (658)
...... ....+..+...|...|..+.|+..+++.++..+. -...|+.|..++-..|++.+|...+.+...... ....
T Consensus 279 l~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~had 355 (966)
T KOG4626|consen 279 LNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHAD 355 (966)
T ss_pred HhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHH
Confidence 865322 4567788888899999999999999999998654 567899999999999999999999999988632 2466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
..+.|...+...|.+++|..+|....+... --....+.|...|..+|++++|...++++.+..|.-..+|+.+...|-.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 778899999999999999999999988522 2356788899999999999999999999999999899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY-VTYTTLVTR 612 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 612 (658)
.|+.+.|.+.+.+.+.. .|. ...++.|...|...|++.+|++-+++... ++||. ..|..++.+
T Consensus 435 ~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred hhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 99999999999999984 565 66789999999999999999999999987 56663 345555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-20 Score=187.54 Aligned_cols=559 Identities=15% Similarity=0.079 Sum_probs=357.9
Q ss_pred hHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHH-----------------HHHHH
Q 006154 74 PKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEF-----------------LEGLL 136 (658)
Q Consensus 74 ~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~l~ 136 (658)
.+.|..-|..+.++. +++.-...--+.+....+++..|..++..++..+.....++ ...+.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 467777788777665 56666666666777777788888888777654311111111 00011
Q ss_pred hhccCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006154 137 DSYEICKATPAVFDALVRACTQI---GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV 213 (658)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 213 (658)
....-.|.+..++..|...-... ..+..+..++...-... .-+|.+.+.|...|.-.|++..++.+...+...-..
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 11112223333333333222222 23444555555544433 236667777777777777777777777777754211
Q ss_pred --cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh
Q 006154 214 --ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT 291 (658)
Q Consensus 214 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 291 (658)
.-...|-.+.+++-..|++++|..+|.+..+....--+..+-.+...+.+.|+++.+...|+.+ ... .+-+..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv---~k~-~p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV---LKQ-LPNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH---HHh-CcchHHH
Confidence 1133466677777777778887777777665422211334555667777777777777777773 321 2334556
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCcHhHHH
Q 006154 292 HNCIINGFCKLG----RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEM----VKRGLMPNNVVYN 363 (658)
Q Consensus 292 ~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~ 363 (658)
...+...|...+ ..+.|..++.+..+.- +.|...|-.+...|-...-+.. +..|... ...+..+.+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666666554 4566666666666554 5566677666666655443333 5555443 3445456677778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 364 STIHWLFAEGDVEGALFVLSDMIDK---HICPDH------FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNI 434 (658)
Q Consensus 364 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 434 (658)
.+.......|++++|...|...... ...+|. .+--.+...+-..++++.|.+.|..+++..+. -+..|..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHH
Confidence 8888888888888888888777654 122222 12233445555667788888888888777543 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE-KKPNLVIYNSIINGLCK-- 511 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 511 (658)
++.+....+...+|...++...... ..++..++.+...+.+...+..|.+-|....+.- ..+|....-+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5544445567778888887777642 2355566666667777777877777666655432 23566666667665542
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 512 ----------DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 512 ----------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
.+..+.|.++|.++.+..|.|..+-|.++-.++..|++.+|..+|.+..+.. .....+|..+.++|..+
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 3457889999999999999899999999999999999999999999998864 23566788999999999
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 582 GCYQQARELMKVMILH-GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
|++..|+++|+..... +..-+..+...|..++.+.|.+.+|.+.+.........-....+|..
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 9999999999987754 44456778888999999999999999998888875333333445443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-18 Score=188.63 Aligned_cols=539 Identities=10% Similarity=-0.029 Sum_probs=319.0
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-C-hHHHH---------------
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSV-S-PLEFL--------------- 132 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~--------------- 132 (658)
..++++.|+..++.+.+.. +.+...+..++.+ +++++|..++++++....- . +....
T Consensus 90 ~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~ 163 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL 163 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH
Confidence 3568999999999998754 4455555544333 8999999999999986221 1 11000
Q ss_pred ---HHHHhhccCCC--CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh-cCCHhHHHHHHH
Q 006154 133 ---EGLLDSYEICK--ATPAVFDAL-VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK-LNEIGRFWKLYK 205 (658)
Q Consensus 133 ---~~l~~~~~~~~--~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~ 205 (658)
...+. ....+ +.+.+.... .+.|.+.|++++|++++.++.+.++. +......|..+|.. .++ +.+..+++
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~ 240 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS 240 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc
Confidence 00111 11122 234545555 99999999999999999999998644 56667778778887 477 88888865
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHH----------------
Q 006154 206 EMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW-PNVVCFNMIINEACQVGDLE---------------- 268 (658)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~---------------- 268 (658)
. ....+...+..+...+.+.|+.++|.++++++...-.. |+..+|.-++ .+.+...
T Consensus 241 ~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 241 Q----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred h----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhhhhHHHHH
Confidence 4 23367889999999999999999999999997654222 5555554444 3333320
Q ss_pred -HHHHHHHHh---------cccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 269 -FALKLFRKM---------GVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG 338 (658)
Q Consensus 269 -~A~~~~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 338 (658)
-.+++.+.. +.+ ..+.|.......-..+....+...++...+..|.+.. +-+....-.+.-.....|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKL--LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHH--hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 000001110 001 1133333321111112223355556666666665542 334444444555566677
Q ss_pred ChHHHHHHHHHHHHC-C-CCCcHhHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhC-CC
Q 006154 339 SSEEALRLCDEMVKR-G-LMPNNVVYNSTIHWLFAEGD---VEGALFV----------------------LSDMIDK-HI 390 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~ 390 (658)
+.++|.+++...... + -.++......++..|.+.+. ..++..+ +...... +.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 777777777776552 1 12233334455555555544 2222222 1111111 11
Q ss_pred -CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006154 391 -CP--DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY 467 (658)
Q Consensus 391 -~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 467 (658)
++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 22 44555666655555 66667777666666553 33333333444445677777777777776543 2333444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
..+...+.+.|++++|...+++..+... .+...+..+.......|++++|...+++..+..|. ...|..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 5555666677777777777777766532 22233333333344457777777777777777663 667777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++|+..+++..... +.+...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777753 3345566667777777777777777777777642 2245566677777777777777777777
Q ss_pred HHHHCCCCCCH
Q 006154 628 DMVLSGVSPDN 638 (658)
Q Consensus 628 ~m~~~g~~p~~ 638 (658)
+..+ ..|+.
T Consensus 702 ~Al~--l~P~~ 710 (987)
T PRK09782 702 LVID--DIDNQ 710 (987)
T ss_pred HHHh--cCCCC
Confidence 7776 34443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-19 Score=177.87 Aligned_cols=555 Identities=14% Similarity=0.072 Sum_probs=412.1
Q ss_pred cCCChHHHHHHHHHhccc-CCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCC-------------------hH
Q 006154 70 FRKSPKLALEFYTWVGEN-NRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVS-------------------PL 129 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~-------------------~~ 129 (658)
.+++...|+.+|..+... +...++ ....+.+.+.+.++.+.|...+..+++...-. -.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 357889999999987654 334444 44556788889999999988888887642211 01
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 006154 130 EFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS--VSIHAWNNFLSHLVKLNEIGRFWKLYKEM 207 (658)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 207 (658)
..+..+...+...+.+|.+.+.|.+-|.-.|++..++.+...+...... .-..+|-.+.++|...|+++.|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 2233345566677899999999999999999999999999999875422 12356888999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHhcccccC
Q 006154 208 VSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG----DLEFALKLFRKMGVMSGD 283 (658)
Q Consensus 208 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~ 283 (658)
.+..-.--+..+--+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..++.+ ....
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K---~~~~ 409 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGK---VLEQ 409 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH---HHhc
Confidence 8764221244556678899999999999999999988632 24557777777777665 56777777777 3332
Q ss_pred CcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC
Q 006154 284 SVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI----KAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR---GLM 356 (658)
Q Consensus 284 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~ 356 (658)
.+.|...|..+...+....-+. +...+..+. ..+..+.....|.+...+...|++++|...|+..... -..
T Consensus 410 -~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 -TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred -ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3457788888877776554443 366665544 4455678889999999999999999999999998765 122
Q ss_pred CcH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 006154 357 PNN------VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY 430 (658)
Q Consensus 357 p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (658)
+|. .+-..+...+-..++.+.|.+.|..+....+. -+..|..++......+...+|...+..+...+-. ++.
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcH
Confidence 333 23334556666778999999999999886322 3444555554444567889999999999876533 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCC
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCK------------GGNIEGAVQVYENMKKVEKKP 497 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~ 497 (658)
.+..+...+.+...+..|.+-|..+.+.- ..+|.++.-.|...|.+ .+..++|+++|.++.+..+.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 77778889999999999988777666542 22577766666665542 24578899999999887544
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVNKVGYNILIN 576 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 576 (658)
|...-+.+.-.++..|++.+|..+|.++.+.......+|-.++++|..+|++..|+++|+...+. ....+......|..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 77888889999999999999999999999988778899999999999999999999999988664 33456778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H----------------HhCCChHHHHHHHHHHHHCCCC
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTR--F----------------SKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~----------------~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
++.+.|.+.+|.+.+.......+.-....||..+.. . ...+..+.|.++|..|...+-.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988875433334445543321 1 1123467789999999887433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-21 Score=192.55 Aligned_cols=299 Identities=13% Similarity=0.084 Sum_probs=181.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCh
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTKGLCRNGCV 410 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 410 (658)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3344455555555555544421 1233444444455555555555555555444321111 12344555555555556
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI----ITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~ 486 (658)
++|...|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666655555554422 24455555666666666666666666665554322211 1234455566667777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
++++.+.. +.+...+..+...+.+.|++++|.+.++++....+. ...+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776643 223456666677777777777777777777766554 3456777778888888888888888887774 4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHH
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK---NCSPEEVIELHDDMVLSGVSPDNQ 639 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 639 (658)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.++++.|+..
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 56566677788888888888888888887764 5777777777776654 457788888888888776666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-19 Score=188.86 Aligned_cols=430 Identities=13% Similarity=-0.016 Sum_probs=307.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.+......+.+.|++++|+..|++.++. .|++..|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4567788999999999999999999886 4677889999999999999999999999999874 445778888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
..|++++|+..|..+...+...+. ....++..+........+...++. .+++...+..+.. +......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~--------~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILET--------KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCCCHHHHHH-HHHHccCCc
Confidence 999999999988877654222121 112222211111112333333322 1122222332222 222222222
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-cHhHHHHHHHHHHhcCCHHHHHHH
Q 006154 308 AEEIRYAMIKAGIDCN-VRTYATLIDG---YARGGSSEEALRLCDEMVKRG-LMP-NNVVYNSTIHWLFAEGDVEGALFV 381 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 381 (658)
...-+....+. .+. ...+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22212221111 111 1111111111 123478999999999998765 223 445678888888899999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006154 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
+++.++.... ....|..+...+...|++++|...++++++..+. +..+|..+...+...|++++|...|++.++...
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999876322 4567888888899999999999999999887644 678888899999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHh------
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAI------ 534 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------ 534 (658)
.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|...|++.....+. +..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 356677788888999999999999999988753 336788889999999999999999999999887765 221
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.++..+..+...|++++|..++++..... +.+...+..++..+.+.|++++|++.|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445799999999999988864 334567888999999999999999999998875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-19 Score=187.52 Aligned_cols=431 Identities=11% Similarity=0.005 Sum_probs=311.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006154 183 AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEAC 262 (658)
Q Consensus 183 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 262 (658)
.+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|++.++..++.... +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3556677889999999999999999975 577888888999999999999999999999986432 5668889999999
Q ss_pred hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 006154 263 QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEE 342 (658)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 342 (658)
..|++++|+..|..+ ....+. +......++..+.. ..+........+.. +++...+..+...+ ...+.+.
T Consensus 206 ~lg~~~eA~~~~~~~--~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTAS--CIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHH--HHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCc
Confidence 999999999988763 111111 11111122221111 22333333333332 33334444333322 2222222
Q ss_pred HHHHHHHHHHCCCCCcH-hHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCChHHHHHH
Q 006154 343 ALRLCDEMVKRGLMPNN-VVYNSTIHW---LFAEGDVEGALFVLSDMIDKH-ICP-DHFTYSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 343 A~~~~~~~~~~g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 416 (658)
...-+.+..+. .+.. ..+..+... ....+++++|...|++..+.+ ..| ....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22212211111 1111 111111111 123478999999999999865 223 455678888888999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006154 417 HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK 496 (658)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (658)
+++.++..+. +...|..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..|++..+..+
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999987543 566888899999999999999999999988643 3578888899999999999999999999998643
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH------H
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV------G 570 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~ 570 (658)
.+...+..+...+.+.|++++|...++...+..+.++..++.+...+...|++++|+..|++........+.. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 3567788888999999999999999999999988899999999999999999999999999998853211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
++..+..+...|++++|.+++++..... +.+...+..+...+.+.|++++|+++|++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1222233445799999999999998753 234557888999999999999999999999874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=189.34 Aligned_cols=303 Identities=12% Similarity=0.028 Sum_probs=232.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc---HhHHHHHHHHHHhc
Q 006154 296 INGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN---NVVYNSTIHWLFAE 372 (658)
Q Consensus 296 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~~~~~ 372 (658)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556777888888888887764 44566777777888888888888888887776532222 24567777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA----YSYNILINYLCKSNNLAAA 448 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 448 (658)
|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888888888888765 2345677788888888888888888888888776544321 2345677778888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 449 KQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999888753 23456777788889999999999999999887644333566788889999999999999999998888
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK---FGCYQQARELMKVMILHGIIPDYV 604 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 604 (658)
.+.. ..+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++|+.++++|.+.++.|++.
T Consensus 279 ~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7654 44588899999999999999999998885 5888888888887775 558999999999999887777665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=183.24 Aligned_cols=331 Identities=15% Similarity=0.056 Sum_probs=230.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 006154 99 AIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS 178 (658)
Q Consensus 99 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 178 (658)
.++..+.+.|++++|..+++..+. ..|.++.++..++.+....|++++|.+.++++.+..+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~------------------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVL------------------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHH------------------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC
Confidence 345556677888888888877776 46666777777777777788888888888888776433
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~- 184 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC- 184 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-
Confidence 56677777778888888888888888887752 344667777777788888888888888877665332 22233222
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG 338 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 338 (658)
..+...|++++|...++. +......++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 185 ~~l~~~g~~~eA~~~~~~---~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARA---LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHcCCHHHHHHHHHH---HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 346677888888888877 3333222333444555667777888888888888877664 556677777778888888
Q ss_pred ChHH----HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 339 SSEE----ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414 (658)
Q Consensus 339 ~~~~----A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (658)
++++ |...+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|.
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 8775 67778777766322 4557777777888888888888888887775432 4555666777777888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
+.++.+.+.++. +...+..+..++...|+.++|...|++..+.
T Consensus 339 ~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 339 DEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888877776433 2233444556677788888888888877765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-18 Score=181.46 Aligned_cols=333 Identities=10% Similarity=0.013 Sum_probs=227.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 219 FNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 219 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++ ... -+.+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~---l~~-~P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKL---LAV-NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHH---HHh-CCCChHHHHHHHHH
Confidence 344556677788888888888888776444 3445555666667788888888888883 332 12245667777788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 888888888888888887764 455667777788888888888888888877665332 22223222 346777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHH
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA----AKQLLSS 454 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~ 454 (658)
...++.+.+....++...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 888887776544344444555566777778888888888887776543 56666777777777777775 6777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
...... .+...+..+...+.+.|++++|+..+++..+..+. +...+..+...+...|++++|...++.+....+.+..
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 776532 24566677777777777777777777777765322 4555666677777777777777777777776666555
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+..+..++...|+.++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555566677777777777777777664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-16 Score=170.27 Aligned_cols=454 Identities=13% Similarity=0.043 Sum_probs=331.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|..+.+...-+-...+.|+++.|++.|++..+..+.-.+..+ .++..+...|+.++|+..+++.... .+.......
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll 106 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA 106 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence 44556666666777788999999999999999987544223344 8888888999999999999999832 123344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.+...+...|++++|+++|+++.+.... +...+..++..+...++.++|++.+++ ... ..|+...+..++..+.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~---l~~--~dp~~~~~l~layL~~ 180 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATE---LAE--RDPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH---hcc--cCcchHHHHHHHHHHH
Confidence 4466888899999999999999987544 456777888889999999999999999 443 3455555655555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHH------HHHHHHH---H-
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVY------NSTIHWL---F- 370 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~------~~ll~~~---~- 370 (658)
..++..+|++.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+....+ ..+++.- .
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677767999999999885 667888899999999999999998877653321 11111111 1111110 0
Q ss_pred -hcC---CHHHHHHHHHHHHhC-CCCCCh-hh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 371 -AEG---DVEGALFVLSDMIDK-HICPDH-FT----YSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 371 -~~g---~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
... -.+.|+.-++.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 111 234455566665542 121221 22 22345567788999999999999998886656678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CC--CHH-H
Q 006154 441 KSNNLAAAKQLLSSMIVRG-----LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-----------KP--NLV-I 501 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~--~~~-~ 501 (658)
..+++++|..+++.+.... ..++......|.-++...+++++|..+++.+.+..+ .| |-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999987643 122344456788899999999999999999987322 12 222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..++..+...|++.+|++.++++....|.|......+...+...|.+.+|++.++...... +.+..+....+.++...
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 34556677889999999999999999999999999999999999999999999997777652 34466677888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006154 582 GCYQQARELMKVMILHGIIPDYVTYT 607 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~~~~~ 607 (658)
|++++|..+.+.+.+. .|+.....
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHH
Confidence 9999999999888875 45544333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-18 Score=184.37 Aligned_cols=419 Identities=11% Similarity=-0.028 Sum_probs=228.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44555666666666667777777777776666522 2344456666666666777777777777666542 334455556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHh
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK 301 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 301 (658)
+...+...|++++|+..++++.+... .+.. +..+..++...|+.++|+..++++ ... .+.+...+..+..++..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~a---l~~-~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQA---LPR-APQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHHHHHHHHH
Confidence 66666666777777777766665522 1333 555666666666666666666663 221 11233444445555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCH
Q 006154 302 LGRVEFAEEIRYAMIKAGIDCNV------RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 302 ~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~ 375 (658)
.|..+.|.+.++.... .|+. .....+++..... .....+++
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------------~~~~~~r~ 209 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP------------------------------TRSEKERY 209 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc------------------------------ccChhHHH
Confidence 6666666665554442 1110 0000111111000 00111122
Q ss_pred ---HHHHHHHHHHHhC-CCCCChh-hHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 006154 376 ---EGALFVLSDMIDK-HICPDHF-TYS----ILTKGLCRNGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 376 ---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 445 (658)
++|+..++.+.+. ...|+.. .+. ..+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 4455555555532 1111111 110 0122334556666666666666655422 211 112234556666666
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-----------KPN---LVIYNSIING 508 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 508 (658)
++|+..|+++....... .......+..++...|++++|...++.+.+..+ .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 66666666655432111 122334444455666666666666666655321 122 1234455666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|+.++|.+.++++....|.+...+..++..+...|++++|++.+++..... +.+...+..++..+...|++++|.
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 6777777777777777777777777777777777777777777777777777743 223455556666777777777777
Q ss_pred HHHHHHHHcCCCCCHHH
Q 006154 589 ELMKVMILHGIIPDYVT 605 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~ 605 (658)
.+++++++. .|+...
T Consensus 448 ~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 448 VLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHHh--CCCCHH
Confidence 777777764 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-17 Score=181.92 Aligned_cols=387 Identities=10% Similarity=-0.013 Sum_probs=252.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+.+..++..+...+.+.|++++|.+++++..+.. +.++..+..+...+.+.|++++|...++++++.. +.+.. +.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~ 120 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LL 120 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HH
Confidence 356677789999999999999999999999998874 3367778889999999999999999999999873 45566 88
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChh------hHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSV------THNC 294 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~~~~ 294 (658)
.+..++...|+.++|+..++++.+..+. +...+..+...+...|..++|++.++. ... .|+.. ....
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~---~~~---~p~~~~~l~~~~~~~ 193 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD---ANL---TPAEKRDLEADAAAE 193 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh---CCC---CHHHHHHHHHHHHHH
Confidence 8889999999999999999999987433 455666778888889999999999988 332 23210 0111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCcHh-HH----HHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS---EEALRLCDEMVKR-GLMPNNV-VY----NST 365 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~-g~~p~~~-~~----~~l 365 (658)
++...... .....+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 194 ~~r~~~~~------------------------------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 194 LVRLSFMP------------------------------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHhhccc------------------------------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 11111100 01111122 3444444444432 1111111 00 001
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHh
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHIC-PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG---DAYSYNILINYLCK 441 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 441 (658)
+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|...|+++.+..+.. .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22233445555555555555544321 111 11113445555555555555555554432211 11223334445555
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGL-----------IPD---IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
.|++++|...++.+..... .|+ ...+..+...+...|++++|++.++++.... +.+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5666666666655554311 123 2234556677788899999999999888763 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY 571 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 571 (658)
.+...|++++|++.++++....|.+...+..++..+...|++++|+.+++++++. .|+....
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 8889999999999999999988888888888888889999999999999999884 4555433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-16 Score=168.44 Aligned_cols=451 Identities=9% Similarity=-0.010 Sum_probs=268.2
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
.+.+....+-+..+.|+++.|...|+++.+ ..|.++.....++..+...|+.++|+..+++.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 344444444455555555555555555554 23333211125555555556666666655555
Q ss_pred HhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 173 KVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV 252 (658)
Q Consensus 173 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 252 (658)
... ...+......+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+..
T Consensus 95 ~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 95 QSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 511 01122222222345555566666666666655543 223444445555555555666666665555543 33333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh------
Q 006154 253 CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT------ 326 (658)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 326 (658)
.+..++..+...++..+|++.+++ +... .+.+...+..+..++.+.|-...|.++..+-...= .+....
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ek---ll~~-~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~ 245 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSE---AVRL-APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDA 245 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH---HHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHH
Confidence 333333333333444445555555 2222 12234444555555555555555554444322110 000000
Q ss_pred HHHHHHHH-----HhcCC---hHHHHHHHHHHHHC-CCCCcHhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 327 YATLIDGY-----ARGGS---SEEALRLCDEMVKR-GLMPNNVV-----YNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 327 ~~~li~~~-----~~~g~---~~~A~~~~~~~~~~-g~~p~~~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
...+++.- ....+ .+.|+.-++.+... +..|.... ..-.+-++.+.|+..++++.|+.+...+.+.
T Consensus 246 ~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 246 AAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 00011000 01112 34455555555442 22232211 2234556778888999999999988877665
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM-----VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL------- 460 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------- 460 (658)
...+-..+.++|...++.++|..+++.+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 666788888889999999999999988876532 22333356788888889999999999988887311
Q ss_pred ------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 006154 461 ------IPDI-ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533 (658)
Q Consensus 461 ------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 533 (658)
.||- ..+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|+..++.+....|.+.
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 1222 233445677888999999999999998764 44888999999999999999999999998888888899
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNI 573 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 573 (658)
.+....+.++...|++.+|..+.+.+.+. .|+......
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 99999999999999999999999999884 455554333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-15 Score=154.46 Aligned_cols=367 Identities=14% Similarity=0.077 Sum_probs=219.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
.....+..+...|++++|..++.++++ ..|.++.+|.+|..+|-..|+.+++...+-..-..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 344455556666888888888888777 46677777777777777777777777776666655
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFN 255 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 255 (658)
.++ |...|..+.....+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.....+.|..-..
T Consensus 203 ~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 203 NPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred CCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 433 55777777777777777777777777777764 3444444445566777777777777777777653322222222
Q ss_pred H----HHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------
Q 006154 256 M----IINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG------------ 319 (658)
Q Consensus 256 ~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 319 (658)
. .+..+...++-+.|.+.++.. ....+-..+...++.++..+.+...++.|......+..+.
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~--~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGA--LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH--HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 2 234445556667777777664 2222223345556677777777777777776666655411
Q ss_pred ---------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 006154 320 ---------------IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRG--LMPNNVVYNSTIHWLFAEGDVEGALFVL 382 (658)
Q Consensus 320 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 382 (658)
..++..+ .-++-++......+....+........ +.-+...|.-+..+|...|++.+|+.++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222 011222223333333333333333333 2224456667777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 006154 383 SDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR---- 458 (658)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 458 (658)
..+......-+...|-.+..+|...|..++|.+.|+.++...+. +...-..|...+.+.|+.++|.+++..+...
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 77776644445667777777777777777777777777766433 4445556666677777777777777765421
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 459 ----GLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 459 ----~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
+..|+........+.+.+.|+.++-+.+
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2223333333344455556666554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-14 Score=140.95 Aligned_cols=555 Identities=14% Similarity=0.040 Sum_probs=365.0
Q ss_pred ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCC-----------CChHHHHHHHHhh-cc
Q 006154 73 SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANS-----------VSPLEFLEGLLDS-YE 140 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~-~~ 140 (658)
|..+|...+..+.... +..+..+.+-++.--..|.+..|+.++.+-.+... .++.++-..++.. ..
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3466777777766543 44455666667777777888888888776555311 2233332222221 11
Q ss_pred CCCCCHHHHHHHH---------------------------HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 006154 141 ICKATPAVFDALV---------------------------RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK 193 (658)
Q Consensus 141 ~~~~~~~~~~~l~---------------------------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 193 (658)
..|.++..|..-+ .+-....+.++|.-++.+..+. ++.+... ..+|.+
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~dL----wlAlar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMDL----WLALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHH----HHHHHH
Confidence 2333333332211 1222234444555555555553 2223333 345566
Q ss_pred cCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 194 LNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRM----LKSGIWPNVVCFNMIINEACQVGDLEF 269 (658)
Q Consensus 194 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~ 269 (658)
...|+.|..++.+..+. ++.+...|.+-...--..|+.+...+++.+- ...|+..+...|..=...+-..|..-.
T Consensus 419 LetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 67778888888887765 5667777777666666778887777776653 345777777777777777777777777
Q ss_pred HHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 270 ALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 270 A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+..+... ..+-|+... ..||+.-.+.|.+.+.++-|..+|....+.- +.+...|...+..--..|..++...++
T Consensus 498 cQAIi~a---vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 498 CQAIIRA---VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred HHHHHHH---HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7777776 455444322 4677778888888888888888888877653 556667777766666778888888888
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006154 348 DEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG 427 (658)
Q Consensus 348 ~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (658)
++....-. -....|......+...|++..|..++....+.... +...+-.-+.....+.+++.|..+|.+.... .|
T Consensus 574 qkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 574 QKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 88877632 24455666666777788888888888888876444 6667777777778888888888888887764 45
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...|.--++..--.++.++|.+++++.++. ++.-...|-.+.+.+.+.++.+.|.+.|..-.+. ++..+..|..+..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 6677777677777778888888888887775 3323556777777888888888888888776654 3445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.--+.|.+-.|..++++....+|.+...|...+.+-.+.|..+.|..+..+.++. ++.+...|..-|...-+.++-..+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 6667788888888888888888888888888888888888888888887777654 344455555555555454444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN-QTYNAIISPLLGEKS 653 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 653 (658)
...+++. +-|++....+...+....++++|.++|.+.++. .||. .+|.-+..-....|.
T Consensus 807 ~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 807 IDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 3333332 235555555666666666677777777766653 3433 556666665555553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-14 Score=136.45 Aligned_cols=474 Identities=10% Similarity=0.017 Sum_probs=390.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH----hCCCCcCH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV----SCGYVENV 216 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~~~~ 216 (658)
-+|.+...|. +|.+..-++.|..++....+. ++.+...|-+-...--.+|+.+...++.++-+ ..|+..+.
T Consensus 405 ccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 405 CCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred hccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecH
Confidence 4666666665 455667789999999999986 66689999888888888999999988887654 56888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 217 NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN--VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 217 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
..|-.=...+-+.|.+-.+..+....+..|++-. ..||+.-...|.+.+.++-|..+|... ..- ++-+...|..
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a---lqv-fp~k~slWlr 555 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA---LQV-FPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH---Hhh-ccchhHHHHH
Confidence 8888888888889999999999999888877633 348888889999999999999999883 332 4446778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
....--..|..++-..+|++....- +.....|-.....+-..|+...|..++....+.... +...|...+.....+.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 8887778899999999999999873 556666777778888899999999999999887544 77789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
++.|..+|.+... ..|+...|..-+....-.++.++|.+++++.++.-+. -...|..+...+-+.++.+.|.+.|..
T Consensus 634 ~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 634 LERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999998876 5677888887777777889999999999999987432 345788888889999999999999887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
-.+. ++..+..|-.+...--+.|++-.|..+++...-.++. +...|...|.+-.+.|..+.|..++.++.+..|.+..
T Consensus 711 G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 711 GTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred cccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 6654 4445667777777778889999999999999887655 8889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
.|..-|...-+.++-..+...++ + +.-|++....+...+....++++|.+.|.+.+..+ +.+..+|.-+...+.
T Consensus 789 LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL 862 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence 99999988877777555444433 3 45577888889999999999999999999999863 335668888888899
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH
Q 006154 615 KNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
+.|.-++-.+++++..+ ..|..
T Consensus 863 ~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HhCCHHHHHHHHHHHhc--cCCCC
Confidence 99999999999999887 45554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=148.58 Aligned_cols=485 Identities=14% Similarity=0.085 Sum_probs=297.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC------HH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAW-NNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN------VN 217 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~ 217 (658)
+-.++..|...|..+....+|+..++.+.+...-|+.-.. -.+..++.+.+++.+|++.|+..+.. .|+ +.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 3455666788888899999999999999987776665433 34566788999999999999988865 333 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh------
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT------ 291 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------ 291 (658)
..+.+...+.+.|.+++|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.++..+. ..||..-
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip---~~~dddkyi~~~d 352 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP---GEIDDDKYIKEKD 352 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC---CCCCcccccCCcC
Confidence 4555556688999999999999998875 5787766666767777899999999999853221 1122111
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCcHhH
Q 006154 292 --HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTY----ATLIDGYARGGS----SEEALRLCDEMVKRGLMPNNVV 361 (658)
Q Consensus 292 --~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~----~~~A~~~~~~~~~~g~~p~~~~ 361 (658)
-..|+.-..+.. .++.|.+.+ +.+..-+ .-+|.- .-.-+ .+-.++.++.-....+..+.
T Consensus 353 dp~~~ll~eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl-- 421 (840)
T KOG2003|consen 353 DPDDNLLNEAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL-- 421 (840)
T ss_pred CcchHHHHHHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh--
Confidence 112222222211 112222111 0010000 000000 00001 11111111111100000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR--NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL 439 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (658)
-..-...+.++|+++.|+++++-..++.-+.....-+.|...+.- ..++..|.++-+..+...-- +......-.+..
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCcee
Confidence 001123466788888888888777666443333333333322222 33566666665555433211 222221122223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006154 440 CKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 519 (658)
...|++++|.+.+++.......-....|++ .-.+.+.|+.++|++.|-++... ...+..+...+...|-...+...|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 346788888888888776522212222332 22355678888888888776553 3346667777777777788888888
Q ss_pred HHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 520 SLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
+++.+....-|.|+.++..|...|-+.|+-..|.+.+-+--+. ++-|..+...|..-|....-+++|+..|++..- +
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8888887777778888888888888888888887766554443 456777777787778887788888888887764 6
Q ss_pred CCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCC
Q 006154 600 IPDYVTYTTLVTRF-SKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654 (658)
Q Consensus 600 ~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 654 (658)
+|+..-|..++..| .+.|++++|.++++..-.+ ++-|..+...|++.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 78888887777654 4578888888888887764 677778888888877776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-15 Score=136.39 Aligned_cols=418 Identities=15% Similarity=0.178 Sum_probs=257.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 157 TQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN---EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
...|.+.++.-+|+.|.+.|+..++..-..|+..-+-.+ -+-.-++.|-.|...| ..+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 456889999999999999998888877666665433322 2223355566666554 2223333 345443
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
+ ++-+.. +-+..+|..+|.++|+--..+.|.+++++ ......+.+..+||.+|.+-.-. ...+++.
T Consensus 197 d---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE---~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 197 D---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKE---HRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred H---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHH---HHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 3 332322 22566888888888888888888888888 55555667778888887654322 2267788
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEE----ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG-ALFVLSDMIDK 388 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 388 (658)
+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 88888888888888888888888887764 45777788888888888888888888887776543 44444444321
Q ss_pred ----CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 389 ----HIC----PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEH----MVGD---AYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 389 ----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..+ .|...+...+..|....+.+-|.++..-..... +.|+ ..-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 234455666667777777777776665544321 1122 2235566777778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--H-----------HHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-SL--D-----------AAK 519 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~-----------~a~ 519 (658)
.|+-.-.-|+..+...++.+..-.|.++-.-+++.+++..|..-+...-..++..+++.. .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888776777878877788887778888888888888877665544444444444444332 11 0 011
Q ss_pred HHHHHHH-----HcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChHHHH---HHHHHHHhcCCHHHHHH
Q 006154 520 SLLQASQ-----RIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVG-IAVNKVGYN---ILINFLCKFGCYQQARE 589 (658)
Q Consensus 520 ~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~ 589 (658)
.+++... ..... .+...+..+..+.+.|+.++|.+++.-+.+.+ --|-....| .+++.-...++...|+.
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 1111100 00111 45555555566666666666666666664322 112222233 34444445556666666
Q ss_pred HHHHHHHc
Q 006154 590 LMKVMILH 597 (658)
Q Consensus 590 ~~~~~~~~ 597 (658)
.++-|...
T Consensus 583 ~lQ~a~~~ 590 (625)
T KOG4422|consen 583 VLQLASAF 590 (625)
T ss_pred HHHHHHHc
Confidence 66666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-14 Score=130.21 Aligned_cols=427 Identities=17% Similarity=0.189 Sum_probs=309.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc--CCHHH-HHHHHHHHHhCCCCCChhhHHHH
Q 006154 181 IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE--CKLEE-ALSLYYRMLKSGIWPNVVCFNMI 257 (658)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 257 (658)
+.+=|.|+. +...|....+.-+|+.|...|++.+...-..|++..+-. .++.- -.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 344555555 345788999999999999999988888887777755433 33322 23445555554432 33444
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
+.|++.+ -+|+. .+.+..++.++|.++|+--..+.|.+++++......+.+..++|.+|.+-.-.
T Consensus 191 -----K~G~vAd--L~~E~--------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET--------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH--HHHhh--------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3455544 34443 23367899999999999999999999999998887788999999999765432
Q ss_pred CChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-
Q 006154 338 GSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG----ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ- 412 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 412 (658)
...+++.+|....+.||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 256 ----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 ----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred ----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 227899999999999999999999999999998765 46788999999999999999999999999888644
Q ss_pred HHHHHHHHHH----cCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhc
Q 006154 413 AFKLHNQVLE----EHMVG----DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG----LIPD---IITYGTLIDGYCKG 477 (658)
Q Consensus 413 a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~ 477 (658)
+..+..++.. +...| |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444433 22333 44556777888889999998888776555431 2233 23356677788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcC-CH------
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFING-KI------ 549 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~------ 549 (658)
...+.-...|+.|.-.-.-|+..+...++++....+.++-..+++.++...|.. +.....-++..+++.. +.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999999998778889999999999999999999999999999988865 5555555555555544 11
Q ss_pred --HH-----HHHHH-------HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC---CCHHHHHHHHH
Q 006154 550 --AE-----AFAMF-------SEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG-II---PDYVTYTTLVT 611 (658)
Q Consensus 550 --~~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~---p~~~~~~~l~~ 611 (658)
.. |..++ .++..... .....+..+-.+.+.|+.++|.+++..+.+.+ -. |......-++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 11 11111 22233333 34445666777889999999999999996553 22 33333445666
Q ss_pred HHHhCCChHHHHHHHHHHHHCC
Q 006154 612 RFSKNCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~g 633 (658)
.-.+.+++..|...++-|.+.+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 6777889999999999997754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-13 Score=126.84 Aligned_cols=472 Identities=12% Similarity=0.078 Sum_probs=351.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCH-HHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENV-NTFNLVI 223 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~ 223 (658)
+...|......=..++++..|..+|++.+... ..+...|...+..-.++.+...|..+++..+..- |-+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 34556666666677889999999999999876 4488889999999999999999999999999752 332 3445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
.+--..|++..|.++|++-.+ ..|+..+|++.|+.-.+.+.++.|..++++. .- +.|++.+|......-.+.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerf---V~--~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERF---VL--VHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH---he--ecccHHHHHHHHHHHHhcC
Confidence 555567999999999999887 4899999999999999999999999999994 43 5689999999999999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHHhcCCHHHHHH
Q 006154 304 RVEFAEEIRYAMIKA-G-IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIHWLFAEGDVEGALF 380 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 380 (658)
.+..|..+++...+. | -..+...+.+....-..+..++.|.-+|+-....=.+.. ...|.....-=-+-|+.....+
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999999988765 2 012334455555555567888999999888776522211 3344444444444566444333
Q ss_pred H--------HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHH--------HHHHHhcC
Q 006154 381 V--------LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY-SYNIL--------INYLCKSN 443 (658)
Q Consensus 381 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~ 443 (658)
. ++.++.. .+.|-.++-..++.-...|+.+...++|+..+..-++.+.. .|... +-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 3444444 33477788888888888899999999999998764332211 12111 12223478
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 519 (658)
+.+.+.++++..++. ++....||.-+--.| .++.+...|.+++...+ |..|...++...|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 899999999998884 444566665544333 46788999999998876 56789999999999999999999999
Q ss_pred HHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 520 SLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
+++++..+-+|.+..+|......-...|+.+.|..+|.-+.+... .-....|.+.|+.-...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r- 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR- 536 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999887421 112445677777778899999999999999975
Q ss_pred CCCCHHHHHHHHHHHH-----hCC-----------ChHHHHHHHHHHHHC
Q 006154 599 IIPDYVTYTTLVTRFS-----KNC-----------SPEEVIELHDDMVLS 632 (658)
Q Consensus 599 ~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~~ 632 (658)
.+...+|-++...-. +.| ....|..+|++....
T Consensus 537 -t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 537 -TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred -cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 445556666554322 334 456788888876553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-12 Score=120.07 Aligned_cols=465 Identities=12% Similarity=0.104 Sum_probs=349.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 006154 99 AIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS 178 (658)
Q Consensus 99 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 178 (658)
.-+..--..+++..|+++++.++. ....+...|...+.+=.++..+..|..++++....-+.
T Consensus 78 kYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 333444445678889999988886 56678888999999999999999999999999886444
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
.| ..|...+.+--..|+...|.++|+.-... .|+...|++.|+.-.+-++.+.|..+|++.+-. .|++.+|....
T Consensus 140 Vd-qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikya 214 (677)
T KOG1915|consen 140 VD-QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYA 214 (677)
T ss_pred HH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHH
Confidence 33 35666666667789999999999999875 799999999999999999999999999998764 69999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHh
Q 006154 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYAR 336 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 336 (658)
..--+.|....|..+++......... ..+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDD-EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 98899999999999999863333321 1123445555555566778899999999888762 222 3344444444344
Q ss_pred cCCh---HHHHH-----HHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h-hHHHHH-----
Q 006154 337 GGSS---EEALR-----LCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDH-F-TYSILT----- 401 (658)
Q Consensus 337 ~g~~---~~A~~-----~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~----- 401 (658)
-|+. ++++- -++.+.+.+ .-|..+|-..+..-...|+.+...++|++.+.. ++|-. . .+...|
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 4553 33321 233444443 337788888888888899999999999999986 44421 1 122111
Q ss_pred ---HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 402 ---KGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNIL----INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 402 ---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
-.-....+++.+.++++..++. ++....||.-+ .....++.++..|.+++...+ |..|...+|...|..-
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 1123567899999999998884 33344555444 444557889999999998876 4578999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHH
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+.+++|....+|++.++.++. +..+|......-...|+.+.|..+|+-+...... ....|.+.|+.-...|.+++|
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 9999999999999999997554 7788888888888899999999999998877654 677889999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLC-----KFG-----------CYQQARELMKVMIL 596 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 596 (658)
..+++++++. .+....|.+....-. +.| .+..|.++|+++..
T Consensus 527 R~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 527 RALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999885 345556666554433 334 56778888888664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-13 Score=135.58 Aligned_cols=359 Identities=13% Similarity=0.054 Sum_probs=256.5
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVF 149 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (658)
.+++.+.|.+.+.-+.++. +-.+.+|.+++.++-..|+.+.+....-.+.. -.|.+...|
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W 210 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELW 210 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHH
Confidence 4689999999999999876 66788999999999999999888765443332 567788999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHH----HHHHHH
Q 006154 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTF----NLVIYA 225 (658)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~ 225 (658)
..+.....+.|++++|.-.|.+.++..+. +....-.-...|-+.|+...|..-|.++.....+.|..-. -.++..
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998544 4555555677899999999999999999987533333222 234556
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhccc------------------------
Q 006154 226 LCKECKLEEALSLYYRMLKSG-IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVM------------------------ 280 (658)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------ 280 (658)
+...++.+.|.+.++.....+ -.-+...++.++..+.+...++.|..........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 677788899999998877632 2235567889999999999999998888773210
Q ss_pred ccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc
Q 006154 281 SGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN 358 (658)
Q Consensus 281 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 358 (658)
...+..++... ..+.-++.+....+...-+.....+.. ...++..|.-+..+|...|++.+|+.+|..+......-+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 00111222222 123334445555555666666666665 334567788888889999999999999988887765556
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChh
Q 006154 359 NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE--------HMVGDAY 430 (658)
Q Consensus 359 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 430 (658)
...|-.+..+|...|..++|.+.|+..+...+ .+...--.|...+.+.|+.++|.+.++.+... +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 77888888899999999999999988887532 24455556667778889999888888875422 2233333
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQL 451 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~ 451 (658)
........+.+.|+.++=..+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 333444555566665554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-14 Score=130.17 Aligned_cols=442 Identities=13% Similarity=0.056 Sum_probs=291.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHH-HHHHHHHH
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVS----IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNT-FNLVIYAL 226 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~ 226 (658)
+.+.+.+..++.+|++.++-.+..-+..+ ....+.+...+.+.|+++.|+..|+...+. .|+..+ +|.++ .+
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i-~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII-CA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh-hh
Confidence 55678888999999999988877533322 234555555678899999999999999886 577654 55544 44
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHHhcCC--------HHHHHHHHHHhcccccCCcCCChh
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCF--------NMIINEACQVGD--------LEFALKLFRKMGVMSGDSVLPNSV 290 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~ 290 (658)
..-|+-++..+.|.+|+.....||..-| ..|+.--.+... -..|++..-....+...-+.|+-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 4578999999999999875433332211 122221111111 111111111100012211222211
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 006154 291 -THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369 (658)
Q Consensus 291 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 369 (658)
.|.-.+..+-.....+.|.+ .--.-...|.++|+++.|.++++-+.+..-+.-...-+.|-..+
T Consensus 400 ~g~dwcle~lk~s~~~~la~d---------------lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~ 464 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAID---------------LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALR 464 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhh---------------hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHH
Confidence 01111111111111111111 11112345789999999999999888764332222333332222
Q ss_pred Hh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 370 FA--EGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 370 ~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.- ..++..|.+.-+..+... .-+......-.+.....|++++|.+.+++.+.....-....|| +.-.+-..|++++
T Consensus 465 flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~lde 542 (840)
T KOG2003|consen 465 FLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDE 542 (840)
T ss_pred HHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHH
Confidence 22 346777777776665431 1122233222333456799999999999999864322222222 2334677899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|++.|-++... +..+....-.+...|.-..+..+|++++.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+--+
T Consensus 543 ald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 543 ALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 99999877653 2236667777888898999999999999998776 667899999999999999999999998877777
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF-LCKFGCYQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
-.|.+..+..-|..-|....-+++|+.+|++..- +.|+..-|..++.. +.+.|++++|.++++....+ ++-|....
T Consensus 621 yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldcl 697 (840)
T KOG2003|consen 621 YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCL 697 (840)
T ss_pred ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHH
Confidence 7777888888899999999999999999999876 68999999988765 45789999999999999876 77788888
Q ss_pred HHHHHHHHhCCC
Q 006154 607 TTLVTRFSKNCS 618 (658)
Q Consensus 607 ~~l~~~~~~~g~ 618 (658)
.-|+..+...|.
T Consensus 698 kflvri~~dlgl 709 (840)
T KOG2003|consen 698 KFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhccccc
Confidence 888888877774
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-13 Score=127.69 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=236.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 006154 356 MPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNIL 435 (658)
Q Consensus 356 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 435 (658)
.-+........+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-.++.+..+. .+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 335555666667788889999999999999986 4456667777777899999998888888888888655 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 515 (658)
.-.|...|+..+|.+.|.+....... -...|-.+...|+-.|..|+|+..+..+.+. ++-....+.-+.--|...++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 99999999999999999987764321 2457888889999999999999999888765 222333444556667889999
Q ss_pred HHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CChHHHHHHHHHHHhcCCHHHHHH
Q 006154 516 DAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV--GIA----VNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
+.|.+.|.++....|.|+..++-+.-.....+.+.+|..+|+..+.. ... --..+++.|+++|.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999988631 011 134568999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
.+++.+.. .+-+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999987 355888999999999999999999999999986 7999988887776554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-11 Score=115.92 Aligned_cols=329 Identities=11% Similarity=0.023 Sum_probs=161.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC--h
Q 006154 212 YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN--S 289 (658)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 289 (658)
...|...+-.....+.+.|..+.|++.|...... -+..|.+.+....-..+.+.+..+... .+.| .
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~--------l~~~~h~ 227 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVG--------LPSDMHW 227 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhc--------CcccchH
Confidence 3445555555555566777888888888776643 223344433333223333333332222 1111 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CcHhHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM--PNNVVYNSTIH 367 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~ll~ 367 (658)
..---+..++-.....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1111233455555566677766677776776655555555555666677777777777777765210 14455555443
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.--....+ ..+.+-.-.--+--+.|...+.+-|.-.++.++|...|+..++.++. ....|+.+.+-|....+...
T Consensus 308 v~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 VKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 22211111 11111110001112234444445555555555555555555555433 34445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|.+-++..++-.. .|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|.+.|..+..
T Consensus 383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 5555555554322 244445555555555555555555555555432 22444555555555555555555555555555
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.+..+..++..|+..|-+.++.++|...|++.
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444455555555555555555555544444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-13 Score=133.91 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 521 (658)
..+.+...++++.+... .+.+......+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+.
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 33445555555555432 2346667777888888888888888888888774 3444322 23333455888888888
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+...+..|.|+..+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888888888999999999999999888884 68888888888888899999999888887754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-11 Score=116.47 Aligned_cols=385 Identities=13% Similarity=0.068 Sum_probs=278.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 006154 246 GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVR 325 (658)
Q Consensus 246 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 325 (658)
+..-|..-+-.....+.+.|....|++.|... ... .+-....|..|.... .+. ++...... +.+.|..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~---v~~-~P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEV---VNR-YPWFWSAWLELSELI---TDI----EILSILVV-GLPSDMH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHH---Hhc-CCcchHHHHHHHHhh---chH----HHHHHHHh-cCcccch
Confidence 34446555555555667789999999999883 221 233444444443332 222 22222222 2232222
Q ss_pred hHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHH
Q 006154 326 TYA--TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI--CPDHFTYSILT 401 (658)
Q Consensus 326 ~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 401 (658)
... .+..++-...+.+++..-.......|+.-+...-+....+.....++++|+.+|+++.+..+ --|..+|..++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 211 23455656668888888888888888776666666666777888999999999999998742 12566777665
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 481 (658)
-. +..+- .+.++..-.-.--+--+.|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+..
T Consensus 307 Yv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 307 YV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccH
Confidence 43 32221 1222222211111224567888899999999999999999999987543 5678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|++.|+.+++..+ -|...|-.+.++|.-.+.+.-|+-.|+++....|.|...|.+|+.+|.+.++.++|+.-|.....
T Consensus 382 AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 382 AAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999744 48889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH----GIIPDYVT--YTTLVTRFSKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
.| ..+...+..|.+.|.+.++.++|.+.+++.++. |...+... ..-|...+.+.+++++|..+...... | .
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~ 537 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-E 537 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-C
Confidence 76 336688999999999999999999999987753 33322222 22244457789999999988877765 3 7
Q ss_pred CCHHHHHHHHHHhhcC
Q 006154 636 PDNQTYNAIISPLLGE 651 (658)
Q Consensus 636 p~~~~~~~l~~~~~~~ 651 (658)
+...--..|++.+.+.
T Consensus 538 ~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 538 TECEEAKALLREIRKI 553 (559)
T ss_pred chHHHHHHHHHHHHHh
Confidence 7777777787777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-13 Score=133.30 Aligned_cols=133 Identities=10% Similarity=0.010 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--hhHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY-NSIINGLCKDASLDAAKSLLQASQRIGLLDA--ITYNTL 539 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l 539 (658)
+...+..+...+...|+.++|.+++++..+..+......+ ....-.....++.+.+.+.++...+..|.++ ....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 5555566666666667777777777666664322111110 1111112234566667777777777766666 666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777777743333345676667777777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-13 Score=119.10 Aligned_cols=310 Identities=14% Similarity=0.162 Sum_probs=238.2
Q ss_pred hhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHH
Q 006154 53 QMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFL 132 (658)
Q Consensus 53 ~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (658)
....+++.+.+..+-..+.+.|++|.+.|.-+.+.. +.+.++..++++.+.+.|+.++|..+.+.++++++.....
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q-- 105 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ-- 105 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH--
Confidence 345668889998887777889999999999998643 6678889999999999999999999999998864433222
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006154 133 EGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY 212 (658)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 212 (658)
...+...|.+-|...|-++.|+++|..+.+.|. .-..+...|+.+|....+|++|+++-+++.+.+.
T Consensus 106 ------------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 106 ------------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 124556688999999999999999999988542 3566788999999999999999999999998875
Q ss_pred CcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 213 VEN----VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 213 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
.+. ...|..+...+....+++.|..++.+..+.+.+ .+.+-..+.+.....|+++.|.+.++. ..+.+..--
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~---v~eQn~~yl 248 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALER---VLEQNPEYL 248 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHH---HHHhChHHH
Confidence 544 335667777777788999999999999887433 444555677888899999999999999 555544444
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
..+...|..+|...|+.++....+..+.+. .++...-..+.+.-....-.+.|...+.+-... +|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 667788889999999999999999998877 344445555555555555666676666665555 6888888888886
Q ss_pred HHhc---CCHHHHHHHHHHHHh
Q 006154 369 LFAE---GDVEGALFVLSDMID 387 (658)
Q Consensus 369 ~~~~---g~~~~a~~~~~~~~~ 387 (658)
.... |...+.+..+++|..
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhccccccchhhhHHHHHHHHH
Confidence 6543 345555666666654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=131.67 Aligned_cols=292 Identities=13% Similarity=0.031 Sum_probs=204.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 335 ARGGSSEEALRLCDEMVKRGLMPNN-VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQA 413 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (658)
...|+++.|.+.+.+..+. .|+. ..+-.....+...|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567888888877776665 2332 233344566677788888888888776543222222333346677778888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHHHH
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG-TLID---GYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~~ 489 (658)
.+.++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888887654 6667778888888888888888888888877654 333221 1111 11222333333445555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 490 MKKVEK---KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY--NTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 490 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
+.+... +.+...+..+...+...|+.++|.+++++..+..+++.... ..........++.+.+.+.+++..+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 554322 23788889999999999999999999999999988754321 222223344578889999998888752
Q ss_pred CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 565 AVNK--VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 565 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 566789999999999999999999644444589999999999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-12 Score=120.56 Aligned_cols=218 Identities=12% Similarity=0.016 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|+...|.+-|+..++....++ ..|-.+...|....+.++..+.|++..+.+.. ++.+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 4556666666666666544422 22555556666666666666666666655332 444555555555555666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
|++.++..+. +...|-.+.-+..+.++++++...|++..+..|..+..|+.....+..++++++|.+.|+..++. .|
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 6666664222 34444444444556666777777777777666666666666666777777777777777666653 22
Q ss_pred C-------hHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 N-------KVGY--NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+ ..++ ..++..-.+ +++..|.+++.++.+...+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 1111 112211122 6666677777666654211 234566666666666777777777666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=129.35 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=199.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCChHHH
Q 006154 337 GGSSEEALRLCDEMVKRGLMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYS--ILTKGLCRNGCVKQA 413 (658)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 413 (658)
.|++++|.+.+....+.+- ++.. |........+.|+.+.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5677777766665444321 1222 222233446677777777777777653 33332222 335566677777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-------ITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.+.++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777777644 6667777777778888888888888777776544222 1223333333344556666677
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
++.+.+. .+.++.....+...+...|+.++|.+++++..+..+ ++... ++.+....++.+++++..++..+.. +-
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 7666443 345788889999999999999999999999988533 44222 3344456699999999999998863 45
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667889999999999999999999999984 79999999999999999999999999998765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-11 Score=116.42 Aligned_cols=454 Identities=13% Similarity=0.035 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHH----HHhCC--------
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKE----MVSCG-------- 211 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~g-------- 211 (658)
.+|....-++.++.-.|+++.|..+...-.-. ..|..+.......+.+..++++|..++.. +....
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 44555556777777777777777776654322 33566666667777777777777777762 11100
Q ss_pred -CCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHhc
Q 006154 212 -YVENVN-----------TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQV-GDLEFALKLFRKMG 278 (658)
Q Consensus 212 -~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 278 (658)
+.+|.. .+-.-...|....++++|...|.+.... |...+..+....... --.++-..+|+.+
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l- 199 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESL- 199 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcc-
Confidence 000100 0111112334455677788888777654 444443333221111 1112223333320
Q ss_pred ccccC-CcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 279 VMSGD-SVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 279 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
.-. -...+......+.....-...-++....-++..-.+...+......-.+-+...+++.+..++.+.+.+.. .+
T Consensus 200 --~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pf 276 (611)
T KOG1173|consen 200 --DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PF 276 (611)
T ss_pred --cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CC
Confidence 000 00111111111111110000011111111111112334566666667777888899999999999988763 33
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
....+-.-|.++...|+..+-..+=.++++. .+-...+|-++..-|...|+..+|.+.|.+....+.. -...|-.+.+
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fgh 354 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGH 354 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhH
Confidence 5556666677888899988888888888876 4447788888888888889999999999988766433 4567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
.|.-.|..+.|+..+...-+. ++-...-+--+.--|.+.++.+.|.++|.+.... .+.|+...+-+.-.....+.+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999988777654 1111112223344577889999999999998876 34477788888777778889999
Q ss_pred HHHHHHHHHHcCCC-------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 518 AKSLLQASQRIGLL-------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 518 a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
|..+|+.....-.. -..+++.|+++|.+.+.+++|+..+++.+... +.+..++.+++-.|...|+++.|++.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99999887633221 34568899999999999999999999998863 56888999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 591 MKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 591 ~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
|.+.+. +.|+..+-..++..+.
T Consensus 512 fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHh--cCCccHHHHHHHHHHH
Confidence 999885 5788766666665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-12 Score=117.74 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=138.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 335 ARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (658)
.-.|+.-.|..-|+..++....++. .|-.+...|....+.++....|.+..+.+.. ++.+|..-.....-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3456777777777777766433222 2555666677777777777777777765443 5556666666666666777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006154 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE 494 (658)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 494 (658)
.-|++.....+. +...|-.+.-+..+.+++++++..|++.+++ ++..+..|+.....+...++++.|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 777777766544 5566666666666777777777777777765 44456667777777777777777777777766532
Q ss_pred CC-----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 495 KK-----PN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 495 ~~-----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.. .+ +.+..+++.. .-.+++..|..+++++.+.+|....+|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 01 1111111111 1236666666666666666666666666666666666666666666666544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=142.24 Aligned_cols=259 Identities=16% Similarity=0.146 Sum_probs=84.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKH-ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN 444 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (658)
...+.+.|++++|++++++..... .+.|...+..+.......++.+.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555556666666554433332 1223333333444444555666666666666555433 44445555554 46666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 445 LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE-KKPNLVIYNSIINGLCKDASLDAAKSLLQ 523 (658)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 523 (658)
+++|.+++....++. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554432 344445555666666666666666666655432 23455566666666666777777777777
Q ss_pred HHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 524 ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
++.+..|.+......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+..+++..... +.|+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 7777766666666667777766777766666666665542 3444555666667777777777777777766541 3356
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.+...+..++...|+.++|.++..+..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 666666666777777777776666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=143.22 Aligned_cols=262 Identities=17% Similarity=0.136 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKG-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 229 (658)
.+...+.+.|++++|++++....... .+.++..|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777888888888888886554443 2335556666666667778888888888888876532 45566666665 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHH
Q 006154 230 CKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAE 309 (658)
Q Consensus 230 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 309 (658)
+++++|.+++++..+. .++...+..++..+...|+++++.++++.+. .....+.+...|..+...+.+.|+.++|.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888887776554 2455566677777778888888888887742 22223456667777777778888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006154 310 EIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH 389 (658)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 389 (658)
+.+++..+.. |.|......++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|+.++++.....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 8888877764 4456677777777777787777777777766553 2345566667777777777777777777776642
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 390 ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
+.|+.+...+..++...|+.++|.++..++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2366666777777777777777777766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-12 Score=114.94 Aligned_cols=290 Identities=14% Similarity=0.099 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVL 382 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 382 (658)
|++..|++...+-.+.+ +.....|..-+++.-..|+.+.+-.++.+.-+..-.++...+-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555555444443 22233333344444445555555555555544433333444444444455555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 383 SDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA-------YSYNILINYLCKSNNLAAAKQLLSSM 455 (658)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (658)
+++.+.+.. .+........+|.+.|++.+...++..+.+.+.-.+. .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555544333 3444455555555555555555555555555443332 34555555555555555555566555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhh
Q 006154 456 IVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAIT 535 (658)
Q Consensus 456 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 535 (658)
..+ ...++..-..++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+.++...-.+..++..+..+.++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 443 2334555566777788889999999998888887776652 22223456778888888888888888888889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
+.+|+..|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++....-.+|
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987774 6889999999999999999999998888876443333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-09 Score=106.56 Aligned_cols=438 Identities=15% Similarity=0.102 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.|....+.....-.+...|+-++|.+........++. +.+.|..+.-.+....++++|++.|+.....+ +.|...+.-
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRD 114 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4444455555666666778888888877777765444 66777777777777778888888888888765 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHH-----
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCII----- 296 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li----- 296 (658)
+.-.-.+.|+++.....-.+..+... .....|..+..++.-.|+...|..++++.+.... -.|+...+....
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHH
Confidence 66666667777777666666665421 1344677777777777888888888777422221 234444333222
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHH-hcCC
Q 006154 297 -NGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF-AEGD 374 (658)
Q Consensus 297 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~g~ 374 (658)
....+.|.+++|.+.+..-...- ......-.+-...+.+.+++++|..++..+... .||...|+..+..+. +-.+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d 268 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKD 268 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhh
Confidence 34455677777766665554321 111222233455667778888888888888776 466666555444333 3333
Q ss_pred HHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 375 VEGAL-FVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 375 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..+++ .+|....+. ++-.......=++...-..-.+..-+++....+.|+++ ++..+...|-.....+-..++.-
T Consensus 269 ~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 269 MLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred hHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHH
Confidence 34444 455544433 11011101111111111111233334555556666542 33333333332222221112211
Q ss_pred HHHH----CC----------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006154 454 SMIV----RG----------LIPDIITYG--TLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYNSIINGLCKDASLD 516 (658)
Q Consensus 454 ~~~~----~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 516 (658)
.+.. .| -+|....|+ .++..+-+.|+++.|...++....+ .|+ +..|..-.+.+...|+++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChH
Confidence 1111 11 134444443 4566777888888888888888764 333 345555567777888888
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--------HHH--HHHHHHhcCCHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG--------YNI--LINFLCKFGCYQQ 586 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~--l~~~~~~~g~~~~ 586 (658)
+|..++++..+.+..|...-..-+.-..+.++.++|.++.....+.|. +... |-. =+.+|.+.|++.+
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 888888888887766665555666666778888888888888777653 2221 211 2356777777777
Q ss_pred HHHHHHHHH
Q 006154 587 ARELMKVMI 595 (658)
Q Consensus 587 A~~~~~~~~ 595 (658)
|++-|....
T Consensus 501 ALKkfh~i~ 509 (700)
T KOG1156|consen 501 ALKKFHEIE 509 (700)
T ss_pred HHHHHhhHH
Confidence 776665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-12 Score=125.95 Aligned_cols=284 Identities=12% Similarity=0.062 Sum_probs=182.8
Q ss_pred ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 006154 339 SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH--ICPDHFTYSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (658)
+..+|...|..+.+.- .-.......+..+|...+++++|..+|+.+.+.. ..-+...|.+.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4566777776644432 2233445556677777777777777777776542 11245566665544322 122222
Q ss_pred -HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 417 -HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
-+.+.+... -.+.+|.++.++|.-+++.+.|++.|++.++... -...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 233333332 2667777777777777788888877777776421 1566777777777777777777777777765422
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
+ +...|-.+...|.+.++++.|+-.|+++.+.+|.+.+....++..+-+.|+.++|+++++++...+ +.|+..--..+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 2 333455566677777788888888888877777777777777777777788888888887777654 23444444556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 576 NFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
..+...+++++|++.++++++. ++.+...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6677777778888888777764 2334455666667777777777777777777664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-12 Score=126.83 Aligned_cols=285 Identities=15% Similarity=0.090 Sum_probs=213.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCcHhHHHHHHHHHHhcCCHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL--MPNNVVYNSTIHWLFAEGDVEGALFV 381 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 381 (658)
+..+|...|..+..+- .-+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+-+. -+--.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 3567778887755442 33445666778888888888888888888876521 12556676665433221 111122
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006154 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
-+.+.+. .+-.+.+|.++.++|.-.++.+.|++.|++.++.++. ...+|+.+.+-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 2233332 2336778999999999899999999999998887544 6788888888888888999999999888764
Q ss_pred CCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 462 PDIITYG---TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 462 p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
|...|+ .+...|.+.++++.|+-.|+++.+.++. +.+....+...+-+.|+.++|+.+++++....+.++..--.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 444444 4667788999999999999999887554 66677777888888999999999999999999888877777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
.+..+...+++++|+..++++++. ++.+...|-.++..|.+.|+.+.|+.-|.-+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 788888899999999999999985 3334667788889999999999999999888875433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-11 Score=107.49 Aligned_cols=287 Identities=11% Similarity=0.081 Sum_probs=191.5
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC------HHHHHHHHHHHHhcCC
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN------VNTFNLVIYALCKECK 231 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~ 231 (658)
-..+.++|.++|-+|.+.+.. +..+..+|.+.|.+.|..+.|+.+.+.+..+ || ......|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 346788999999999885433 5666778888888999999999999998874 44 2234456667788888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC----hhhHHHHHHHHHhcCChHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN----SVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 307 (658)
++.|.++|..+.+.+. --..+...|+..|-...++++|++.-+++ ...+-.+. ...|.-+...+....+++.
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L---~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERL---VKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999988877532 24557778888888889999988888874 33222222 2345556666667778888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 308 AEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 199 A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888775 4455666667778888888888888888888774433345667777788888888888888887776
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006154 388 KHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS---NNLAAAKQLLSSMIV 457 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 457 (658)
....++ .-..+........-.+.|..++.+-+.. .|+...+..++...... |...+...+++.|..
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 533333 2233333333333445555544444443 35666666666654432 234444445555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-09 Score=101.37 Aligned_cols=494 Identities=14% Similarity=0.104 Sum_probs=287.0
Q ss_pred hHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHH
Q 006154 74 PKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALV 153 (658)
Q Consensus 74 ~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 153 (658)
|+.++..++.-.+ .++++-..-+..|...+++++|.+.+..++.+. .|.+- ..+.+...|..+-
T Consensus 154 Pets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d------~f~sk-----~gkSn~qlw~elc 217 (835)
T KOG2047|consen 154 PETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQD------EFVSK-----KGKSNHQLWLELC 217 (835)
T ss_pred hHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCch------hhhhh-----cccchhhHHHHHH
Confidence 5556666665442 345556677888999999999999998887641 11100 1223334444444
Q ss_pred HHHHhcCChh---HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-
Q 006154 154 RACTQIGATE---GAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE- 229 (658)
Q Consensus 154 ~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~- 229 (658)
...+++-+.- ....+++.+...-...--..|.+|...|.+.|.++.|..+|++.+.. ...+.-|..+.++|.+-
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 4444432222 22233333333211112356788888888888888888888877754 23444444444444321
Q ss_pred ---------------C------CHHHHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 230 ---------------C------KLEEALSLYYRMLKSGI-----------WPNVVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 230 ---------------g------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
| +++-...-|+.+...+. +-++..|..-.. +..|+..+-...+.++
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHH
Confidence 1 12222333444333210 112333433332 2346666667777664
Q ss_pred cccccCCcCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 278 GVMSGDSVLP--NSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN---VRTYATLIDGYARGGSSEEALRLCDEMVK 352 (658)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (658)
..-......+ -...|..+.+.|-..|+++.|..+|++..+...+.- ..+|......-.+..+++.|+++++....
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 1111111111 134588888999999999999999999987643322 34566666666677888899988877654
Q ss_pred CCCC----------C-------cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 353 RGLM----------P-------NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 353 ~g~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..-. | +...|...++.--..|-++....+|+++++..+. ++.........+-...-++++.+
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHH
Confidence 3111 1 2234555555555677888888888888887654 33333333334445566788888
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHH
Q 006154 416 LHNQVLEEHMVGDA-YSYNILINYLCK---SNNLAAAKQLLSSMIVRGLIPDIITYGTLI--DGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~ 489 (658)
.+++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++ |++|...-+--|+ ..=-+.|....|+.++++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88776665444443 345655554443 3468889999999888 6665433222221 112245778888888888
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC
Q 006154 490 MKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-D-AITYNTLINGYFINGKIAEAFAMFSEMRNV-GI 564 (658)
Q Consensus 490 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 564 (658)
.... .++. ...|+..|.--...=.+.....+++++.+.-+. + ....-.....-++.|..+.|..++.-..+. +.
T Consensus 612 at~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 612 ATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 7654 3322 235666666555555556667788888777554 2 233344556667888999998888777653 22
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 565 AVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..+...|.+.-..-.+.|+-+...++
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33455677777777788884443333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-10 Score=103.78 Aligned_cols=168 Identities=10% Similarity=0.102 Sum_probs=79.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH-HHHHHHHcCC
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT-LINGYFINGK 548 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 548 (658)
+.+.+.-..++++++-.++.+... +..|......+.++.+..|.+.+|+++|-.+......+..+|.. |.++|...++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 344444445555555555555544 22233333345555666666666666665555444444444433 3455556666
Q ss_pred HHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGY-NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++.|+.++-++.. +.+..+. ..+.+-|.+.+.+=-|-+.|+.+.. ..|++..|. |+......+|.
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~ 509 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFR 509 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHH
Confidence 6665555433322 1222222 2333445555555555555555544 345555553 33333444555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhcCC
Q 006154 628 DMVLSGVSP-DNQTYNAIISPLLGEK 652 (658)
Q Consensus 628 ~m~~~g~~p-~~~~~~~l~~~~~~~g 652 (658)
.+....-.| ...+...++..+...+
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 544432222 2234444554444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-08 Score=97.79 Aligned_cols=569 Identities=11% Similarity=0.099 Sum_probs=320.0
Q ss_pred HHHHHhcCCChHHHHHHH--HHhcccCCCCCCHHhHHHHHHHH----HcCCCchHH-HHHHHHHHhcCCC-ChHHHHHHH
Q 006154 64 NRVVSEFRKSPKLALEFY--TWVGENNRFSHSLESSCAIVHLL----VNWRRFDDA-LLLMGNLMSANSV-SPLEFLEGL 135 (658)
Q Consensus 64 ~~vl~~~~~~~~~al~~f--~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~a-~~~~~~~~~~~~~-~~~~~~~~l 135 (658)
.+.++.+..+.+.=..+. +|..-. +..|+..+|..+-+.+ ....+.... ...++-+++++.+ .....|.+-
T Consensus 50 ERal~~lp~sykiW~~YL~~R~~~vk-~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrA 128 (835)
T KOG2047|consen 50 ERALKELPGSYKIWYDYLKARRAQVK-HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRA 128 (835)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 345566666665555555 565543 3355555665544333 323333333 3445555555443 345677777
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC----
Q 006154 136 LDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG---- 211 (658)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g---- 211 (658)
+...+... ...+|...+......|-++-+..++++.++. ++..-+..+..+++.+++++|.+.+...+...
T Consensus 129 LraLpvtq-H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 129 LRALPVTQ-HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred HHhCchHh-hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence 77664333 3477888888888889999999999998875 55667888888999999999998888877431
Q ss_pred --CCcCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCC
Q 006154 212 --YVENVNTFNLVIYALCKECKLE---EALSLYYRMLKSGIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 212 --~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
.+.+...|..+-....+.-+.- ....+++.+... -+|.. .|.+|.+-|.+.|+++.|..++++. ...
T Consensus 204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea---i~~- 277 (835)
T KOG2047|consen 204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEA---IQT- 277 (835)
T ss_pred hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHh-
Confidence 1344556766666665543322 233444444433 34543 6888999999999999999999984 221
Q ss_pred cCCChhhHHHHHHHHHhcCCh----------------------HHHHHHHHHHHHcC-----------CCCChhhHHHHH
Q 006154 285 VLPNSVTHNCIINGFCKLGRV----------------------EFAEEIRYAMIKAG-----------IDCNVRTYATLI 331 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~~~~~~-----------~~~~~~~~~~li 331 (658)
..+..-|..+.++|..-..- +-...-|+.+...+ -+.++..|..-
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR- 355 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR- 355 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh-
Confidence 12445566666666542211 11112222222211 01112222111
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 006154 332 DGYARGGSSEEALRLCDEMVKRGLMPN------NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTK 402 (658)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 402 (658)
.-+..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++...-..+.- ..+|..-..
T Consensus 356 -V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 356 -VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred -hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 122345666667777776653 2222 23577777888888999999888888876533311 223333344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC----------C-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006154 403 GLCRNGCVKQAFKLHNQVLEEHMV----------G-------DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII 465 (658)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 465 (658)
.-.+..+++.|+++.+......-. | +...|...++..-..|-++....+++++++..+. ++.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPq 512 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQ 512 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHH
Confidence 444566778888877766532111 1 3345666666666777888888888888876543 222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCC-C-HhhHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL-VIYNSIINGLCK---DASLDAAKSLLQASQRIGLL-D-AITYNTL 539 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l 539 (658)
..-.....+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|..+|+++.+..|+ . ...|...
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2111122233455677778777776655333443 355555554443 33678888888888885554 2 2233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT---RFS 614 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~---~~~ 614 (658)
...--+.|-...|+.+++++... +.+. ...||+.|.--...=-+..-..+++++++. -|+...-...+. .=+
T Consensus 593 A~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 593 AKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhh
Confidence 33333457777778888776543 2222 334555554333332333445555555553 344443332222 234
Q ss_pred hCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCC
Q 006154 615 KNCSPEEVIELHDDMVLSGVSP--DNQTYNAIISPLLGEKS 653 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 653 (658)
+.|..+.|..++....+- +.| +...|.+.=.-=.+.|+
T Consensus 670 klGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 566666666666665543 233 22334444444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-09 Score=103.17 Aligned_cols=467 Identities=14% Similarity=0.067 Sum_probs=297.7
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH---HhcCCHhHH-------------------HH----HHHHHHhCC
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHL---VKLNEIGRF-------------------WK----LYKEMVSCG 211 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~a-------------------~~----~~~~~~~~g 211 (658)
..+..+++..-+......+...++.++..+...+ ...++.+++ .- .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666555555544433322 223333333 21 222233333
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hh
Q 006154 212 YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SV 290 (658)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 290 (658)
+.-|...|..+.-++...|+++.+.+.|++.....+. ....|..+...|...|.-..|..+++.. ......|+ ..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~---~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRES---LKKSEQPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhh---cccccCCCcch
Confidence 4556778888888888899999999999998764332 5667888888899999999999999883 33222343 33
Q ss_pred hHHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhcC-----------ChHHHHHHHHHHHHCC
Q 006154 291 THNCIINGFC-KLGRVEFAEEIRYAMIKA--GI--DCNVRTYATLIDGYARGG-----------SSEEALRLCDEMVKRG 354 (658)
Q Consensus 291 ~~~~li~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~g 354 (658)
.+...-..|. +.+.++++++.-.++... +. ......|..+.-+|...- ...++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 446777777777666652 11 223445555555554321 1346777788877765
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 355 LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNI 434 (658)
Q Consensus 355 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 434 (658)
.. |+.....+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+.-.. |......
T Consensus 475 ~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 PT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred CC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 33 333333344457778899999999999998877778888888888888899999999998877765221 1111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHH--HHHH----HHHhcCChHHHHHHHHHH----------------
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRG--LIPDIITYG--TLID----GYCKGGNIEGAVQVYENM---------------- 490 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~--~li~----~~~~~g~~~~A~~~~~~~---------------- 490 (658)
-++.-...++.++|......+...- ..+-..+.. .+.. .....++..+|.+....+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 2222233556666655544443210 000000000 0000 000011111121111111
Q ss_pred -HhCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 491 -KKVE--KKPN------LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 491 -~~~~--~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+.. ..|+ ...|......+.+.+..++|...+.++....+..+..|...+..+...|..++|.+.|.....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111 1122 234556677788899999999999999999888899999999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARE--LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.+ +.++.+..++..++.+.|+...|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|....+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 53 3346778899999999999888888 999999865 347889999999999999999999999998874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-10 Score=104.83 Aligned_cols=292 Identities=13% Similarity=0.079 Sum_probs=235.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..|++.+|.++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+.-..++...+-+........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999998877644 3445666677778899999999999999886556667777788888999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHH
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII-------TYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
-++++.+.++. ++........+|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998876 77888899999999999999999999999998765543 46666665555566666666777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 568 (658)
..... .+.++..-.+++.-+...|+.++|.++.++..+...+.. -...-.+.+-++.+.-++..++-.+. .+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 76554 455777888899999999999999999999998876533 22223455677888777777777664 24456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 569 VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
..+.+|...|.+.+.+.+|.+.|+..... .|+..+|+.+..++.+.|+..+|.+..++.+..-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999988874 8999999999999999999999999998877543333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-09 Score=98.08 Aligned_cols=437 Identities=14% Similarity=0.116 Sum_probs=233.6
Q ss_pred HHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHh
Q 006154 104 LVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHA 183 (658)
Q Consensus 104 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 183 (658)
+...+++..|+.+++.-... +......+-.-+..++.+.|++++|...+..+.+.. .++...
T Consensus 32 fls~rDytGAislLefk~~~-----------------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----------------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----------------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 34466777777777654421 111111222335667888999999999998887743 456666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
+-.|...+.-.|.+.+|..+-.+..+ +...-..++..--+.|+-++-..+-+.+.+ ....-.+|.+....
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHH
Confidence 76777777777888888776655322 233333444444455665555555444432 11222344444444
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCh
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNC-IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR--GGSS 340 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~ 340 (658)
.-.+++|++++.+ .... .|+-...|. +.-+|.+..-++-+.++++-..+. ++.++..-|.......+ .|+.
T Consensus 164 R~HYQeAIdvYkr---vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 164 RMHYQEAIDVYKR---VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHHHHHHHHHHH---HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch
Confidence 5566777777776 3322 122222332 334455666666666666665544 12233333333222222 1211
Q ss_pred ---------------------------------HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 341 ---------------------------------EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 341 ---------------------------------~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
+.|++++--+.+. -+..-..++-.|.+++++.+|..+.+++.-
T Consensus 238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P 313 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP 313 (557)
T ss_pred hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC
Confidence 2222222222111 111222344456777888888777665531
Q ss_pred CCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006154 388 KHICPDHFTYSILTKGLCRNG-------CVKQAFKLHNQVLEEHMVGDA-YSYNILINYLCKSNNLAAAKQLLSSMIVRG 459 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (658)
..|-......+. +...| ..+-|.+.|+.+-+.+..-|. .--..+...+.-..++++.+-.++.+..--
T Consensus 314 --ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF 389 (557)
T KOG3785|consen 314 --TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF 389 (557)
T ss_pred --CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222222221 22222 244555566555555443332 233455566666667777777777766543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHH
Q 006154 460 LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYN-SIINGLCKDASLDAAKSLLQASQRIGLL-DAITYN 537 (658)
Q Consensus 460 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 537 (658)
...|...+ .+.++.+..|++.+|+++|-.+....++ |..+|. .+.++|.+.++++.|+.++-++.. +. .-....
T Consensus 390 ~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLq 465 (557)
T KOG3785|consen 390 TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQ 465 (557)
T ss_pred cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHH
Confidence 33334333 3567777788888888888777655444 444444 455667777888777766543221 11 233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+..-|.+.+.+--|-+.|+.+... .|++..| .|+-.....+|+++...
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANH 514 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcC
Confidence 5556777778877777778777764 4666655 34444555666666644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-08 Score=100.92 Aligned_cols=466 Identities=13% Similarity=0.100 Sum_probs=305.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.|...+.+| ..+++...+++.+.+.+. .+--..+.....-.+...|+-++|....+.-++.+ .-+.++|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344444444 668888888888888873 33345555555556778899999999988888755 346678998888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
...++++|++.|......+.. |...|.-+.-.-.+.|+++.....-.+ ..+. .+.....|..++.++.-.|+...
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~---LLql-~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQ---LLQL-RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887433 555666665555667777776666655 2322 22356788888999999999999
Q ss_pred HHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCcHhHH-HHHHHHHHhcCCHHHHH
Q 006154 308 AEEIRYAMIKAG-IDCNVRTYATLI------DGYARGGSSEEALRLCDEMVKRGLMPNNVVY-NSTIHWLFAEGDVEGAL 379 (658)
Q Consensus 308 A~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~ 379 (658)
|..++++..+.. ..|+...|.... ....+.|..++|++.+..-... ..|...+ ..-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 999999988764 246666654433 3445678888888877665443 1233333 34456788899999999
Q ss_pred HHHHHHHhCCCCCChhhHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 380 FVLSDMIDKHICPDHFTYSIL-TKGLCRNGCVKQAF-KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIV 457 (658)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (658)
.++..++.. .||..-|... ..++.+-.+.-++. .+|....+.-+... ..-..=++......-.+..-+++..+.+
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 999999986 4555555544 44443333334444 56666555422111 1111111122222333445567778888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMK----KVE----------KKPNLVI--YNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~ 521 (658)
.|+++-.. .+.+.|-.....+-..++.-.+. ..| -+|.... +-.++..+-..|+++.|...
T Consensus 317 Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88765433 33333322222221111111111 111 1444443 44567788899999999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII- 600 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~- 600 (658)
++.+....|.-...|..-.+.+...|++++|..++++..+.+ .||...-.--+.-..+.++.++|.++.....+.|..
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 999999988888888888899999999999999999999876 455554445566677899999999999998887641
Q ss_pred -CC----HHHHHHH--HHHHHhCCChHHHHHHHHHHH
Q 006154 601 -PD----YVTYTTL--VTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 601 -p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 630 (658)
-+ .-.|-.+ ..+|.+.|++.+|.+=|....
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 01 1123333 345777877777766554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-09 Score=111.28 Aligned_cols=518 Identities=12% Similarity=0.069 Sum_probs=267.7
Q ss_pred cCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhcc-------CCCCCHHHHHHHHHHHHhc
Q 006154 87 NNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYE-------ICKATPAVFDALVRACTQI 159 (658)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~ 159 (658)
..|..|+..+|..++.-|+..|+.+.|- +|..|.-++-.....+|.+++.... ...|.+.+|..|..+|...
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhc
Confidence 4577888899999999999999999888 7776665422223334444433210 1123344455555555555
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-CGYVENVNTFNLVIYALCKECKLEEALSL 238 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 238 (658)
|++.. ++..++ ....+...+...|.......++..+.- .+.-||.. ..+....-.|-++.++++
T Consensus 97 GDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 97 GDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred cchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHH
Confidence 54433 111111 111222233333333333333333221 11222322 122233344556666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 239 YYRMLKSGIWPNVVCFNMIINEACQ-VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
+..+...... . .....++-... ...+++-...... ..+ .|++.+|..++.+-...|+.+.|..++.+|.+
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cks---l~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKS---LVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHH---hhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6555432111 1 11112322222 2334444444333 222 58999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHH-----------HHHHHHH
Q 006154 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGAL-----------FVLSDMI 386 (658)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~ 386 (658)
.|++.+..-|-.|+-+ .++..-+..++.-|...|+.|+..|+...+-.+.++|....+. .++..|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998888877777655 7888888999999999999999999988777666654422211 1111111
Q ss_pred hC-------------------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCChhhHHHHHHH
Q 006154 387 DK-------------------------HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM---VGDAYSYNILINY 438 (658)
Q Consensus 387 ~~-------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~ 438 (658)
.. |.......|...+. ....|.-++..++...+..--. ..++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 10 11111111111111 1123444444444433322100 0122223333332
Q ss_pred HHhcC----------------------CHHHHHHHHHHHHHCCCCCCH----------------------------HHHH
Q 006154 439 LCKSN----------------------NLAAAKQLLSSMIVRGLIPDI----------------------------ITYG 468 (658)
Q Consensus 439 ~~~~~----------------------~~~~A~~~~~~~~~~~~~p~~----------------------------~~~~ 468 (658)
|.+.- ...+..++.... .|+. ..-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 22211 111111111111 1111 0112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFI 545 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 545 (658)
.++-.++..-+..++...-++.... . -...|..+++-++...+.+.|..+.++....... +...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 2222333333333333222222221 1 1145667777777777777777777776655443 66677777778888
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGI-AVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+....+..+++++.+.-. .|+ ..++-.+.+.....|+.+.-.++++-+...|+..+ ..++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888877766211 222 33445566666777777777777777776665432 33344455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 006154 624 ELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 624 ~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
+..+...++ .+|....-..+.+
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCR 638 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHH
Confidence 666655554 4444444333333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-10 Score=114.74 Aligned_cols=481 Identities=12% Similarity=0.016 Sum_probs=262.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
+..|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 56677799999999999999999998 8888888777788888999999888888877665 57888999
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHHh----CCCC-------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 006154 221 LVIYALCKECKLEE---ALSLYYRMLK----SGIW-------------P-NVVCFNMIINEACQVGDLEFALKLFRKMGV 279 (658)
Q Consensus 221 ~l~~~~~~~g~~~~---A~~~~~~m~~----~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 279 (658)
.|..+|.+.|++.. +.+.++.+.. .|+- | ....-...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 3332222221 1211 0 001112233334445666777777666221
Q ss_pred cccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH
Q 006154 280 MSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 359 (658)
.... .|..+ +++-+..... -.+++.......--.|+..+|..++..-..+|+.+-|..++.+|.+.|+..+.
T Consensus 168 sa~~--~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 168 SAWN--APFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccc--chHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 1111 11111 2333322222 22333333322211578888888888888889999999999999998888888
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006154 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL 439 (658)
Q Consensus 360 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (658)
+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.+. .+.........+..+.++.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHHhccc
Confidence 777776655 777888888888888888999988888877777775553222111 1110001122222222221
Q ss_pred HhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHh
Q 006154 440 CKSNNLAA-----AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK--KP-NLVIYNSIINGLCK 511 (658)
Q Consensus 440 ~~~~~~~~-----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~ 511 (658)
....+++. ....+.+..-.|+......|...+.. ...|.-++.+++-..+..-.. .+ ++..+..++.-|..
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 11111111 11111222222433333444443332 236777777777777654222 11 23345555555544
Q ss_pred cCCHHHHHHHHH--HHHHcCCCCHhhHHHHHHHHHH--------------------------------------------
Q 006154 512 DASLDAAKSLLQ--ASQRIGLLDAITYNTLINGYFI-------------------------------------------- 545 (658)
Q Consensus 512 ~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------- 545 (658)
.-+..-...++. +....... ......+.....+
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~-se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLN-SEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhc-hhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 333222222222 22222111 1111111111111
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 546 -NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH--GIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 546 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
.-+..+++..-++.... .- ...|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+
T Consensus 471 se~n~lK~l~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 00111111110111000 00 123566777777777777777777776532 2344555677777888888888888
Q ss_pred HHHHHHHHHCC-CCCC-HHHHHHHHHHhhcCCC
Q 006154 623 IELHDDMVLSG-VSPD-NQTYNAIISPLLGEKS 653 (658)
Q Consensus 623 ~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~g~ 653 (658)
..++++|.+.- ..|+ ..++-.++....-.|.
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agq 580 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQ 580 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccC
Confidence 88888887741 1222 2344445555444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-08 Score=90.28 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=149.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006154 321 DCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSI 399 (658)
Q Consensus 321 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (658)
+.|+.....+...+...|+.++|...|++.... .|+..+ .......+...|+.+....+...+....- -+...|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 344555555555555555555555555555443 122111 11111223344555555555444443210 11122222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006154 400 LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479 (658)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 479 (658)
-+..+...+++..|+.+-++.++.+.. +...|-.-...+...++.++|.-.|+..+... +-+...|..|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 223333455566666666665554433 34444444455566666666666666655431 1245666666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 480 IEGAVQVYENMKKVEKKPNLVIYNSII-NGLCK-DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
+.+|...-+...+. ++.+..+.+.+. ..+.. ...-++|.+++++.....|.-..+.+.+...+...|..+.++.+++
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 66666555554443 233444444432 22222 2234667777777777777766777777777777888888888887
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+. ..||....+.|.+.+...+.+++|.+.|..+...
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7776 3577777778888888888888888887777764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-09 Score=103.61 Aligned_cols=414 Identities=12% Similarity=0.040 Sum_probs=254.5
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFN 255 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 255 (658)
.+.-++..|..+.-++.+.|+++.+.+.|++....- .-....|..+...+...|.-..|+.+++.-......|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345567777777777888888888888888777532 2344567777777777777777888877765543334433333
Q ss_pred HHHH-HHH-hcCCHHHHHHHHHHhcccc-cCCcCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCC
Q 006154 256 MIIN-EAC-QVGDLEFALKLFRKMGVMS-GDSVLPNSVTHNCIINGFCKL-----------GRVEFAEEIRYAMIKAGID 321 (658)
Q Consensus 256 ~li~-~~~-~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 321 (658)
.++. .|. +.|.+++++.+-.++.... ...-......|..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3333 222 2356666666555531100 000011233344444333321 12345667777776664 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT 401 (658)
Q Consensus 322 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 401 (658)
.|....-.+.--|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+...+.- .-|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 33333333444566778888888888888887666678888888888888888888888877766431 10111111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEE----------------------------HMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..-...++.+++......++.- .+.-.+.++..+.......+....-...
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444444433332211 0010112222222211111100000000
Q ss_pred HHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 454 SMIVRGLI--PD------IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 454 ~~~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
+...... |+ ...|......+.+.+..++|...+.+..+. .+.....|......+...|...+|...|...
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111111 22 123445566778889999999888888775 3446677777778888899999999999999
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFA--MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...+|.++.+..++..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|+...+.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999998888877 999999976 557889999999999999999999999988864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-11 Score=105.44 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=201.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY-GT 469 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~ 469 (658)
..|-..-+.+.++|.+.|...+|.+.++..++.. |-+.||..|-.+|.+..++..|+.++.+-.+. .|..+|| ..
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 3355555788899999999999999999988874 45668888999999999999999999998875 3455554 45
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
+...+...++.++|.++|+...+.. +.+......+...|.-.++++-|...+.++...|..++..|+.+.-+|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 6677888899999999999998863 447777777888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
+-++.-|++....--.|+ ...|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999987544454 4567788888889999999999999998764 3367788888888889999999999999
Q ss_pred HHHHCCCCCCH
Q 006154 628 DMVLSGVSPDN 638 (658)
Q Consensus 628 ~m~~~g~~p~~ 638 (658)
.... +.|+.
T Consensus 454 ~A~s--~~P~m 462 (478)
T KOG1129|consen 454 AAKS--VMPDM 462 (478)
T ss_pred Hhhh--hCccc
Confidence 8876 45554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-10 Score=116.76 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=140.5
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCcc
Q 006154 109 RFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQI---------GATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~~ 179 (658)
.+++|..++++.++ ..|.++.+|..+..+|... +++++|...+++..+.++.
T Consensus 276 ~~~~A~~~~~~Al~------------------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~- 336 (553)
T PRK12370 276 SLQQALKLLTQCVN------------------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN- 336 (553)
T ss_pred HHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-
Confidence 35667777777776 4666777777777666532 3467888888888877543
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIIN 259 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 259 (658)
+..++..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 66777777777788888888888888888764 344666777777788888888888888888776332 2223333444
Q ss_pred HHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006154 260 EACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGS 339 (658)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 339 (658)
.+...|++++|...+++ ......+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...|
T Consensus 415 ~~~~~g~~eeA~~~~~~---~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDE---LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHhccCHHHHHHHHHH---HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH-
Confidence 45667778888887777 3322111134445666677777788888888777765442 223334444555556666
Q ss_pred hHHHHHHHHHHHH
Q 006154 340 SEEALRLCDEMVK 352 (658)
Q Consensus 340 ~~~A~~~~~~~~~ 352 (658)
++|...++.+.+
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 366665655544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-08 Score=99.51 Aligned_cols=295 Identities=16% Similarity=0.139 Sum_probs=205.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE- 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~- 229 (658)
-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|...|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3456678889999999999886554 33345566677889999999999999999999986 34455555555555222
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCC
Q 006154 230 ----CKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLE-FALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGR 304 (658)
Q Consensus 230 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 304 (658)
...+...++|+++...- |...+...+.-.+..-..+. .+...+.. +...|+++ +|+.+-..|....+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~---~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRP---QLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHH---HHhcCCch---HHHHHHHHHcChhH
Confidence 35677888899887652 44443333332222222333 33444444 55666653 56666666666666
Q ss_pred hHHHHHHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHH
Q 006154 305 VEFAEEIRYAMIKA----G----------IDCNV--RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIH 367 (658)
Q Consensus 305 ~~~A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~ 367 (658)
.+-..+++...... + -+|+. .++..+...|...|++++|++++++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 13333 34566788888999999999999999887 455 567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------h--HHHHHHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY------S--YNILINYL 439 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~ 439 (658)
.+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|-.. . ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887555 77777777888889999999999999988776433221 1 23456778
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006154 440 CKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~ 458 (658)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8899998888877766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=104.87 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=161.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006154 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN 407 (658)
Q Consensus 328 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (658)
+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..+.+.|+.++.+-++. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55777788888888888888777766 456667777778888888888888888777664 333444444566667777
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006154 408 GCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVY 487 (658)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 487 (658)
++.++|.++++...+.... ++.....+...|.-.++++.|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7888888888887776543 5555555666677777777788777777777765 6666777666666777777777777
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 488 ENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 488 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+....--.|+ ..+|-.+.......|++..|.+.|+-....+..+..+++.|.-.-.+.|+.++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665433333 235556666666677777777777777777777777777777777777777777777777665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-10 Score=103.57 Aligned_cols=158 Identities=12% Similarity=0.038 Sum_probs=69.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHhhHHHHHHHHHHcC
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL--LDAITYNTLINGYFING 547 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 547 (658)
+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++.+..... .....+..+...+...|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 33333344444444444444333221 1223333333444444444444444444433211 13334444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+
T Consensus 150 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 150 DFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred CHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555554432 122334445555555555555555555555443 22233444444444555555555555555
Q ss_pred HHH
Q 006154 628 DMV 630 (658)
Q Consensus 628 ~m~ 630 (658)
.+.
T Consensus 228 ~~~ 230 (234)
T TIGR02521 228 QLQ 230 (234)
T ss_pred HHH
Confidence 444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-10 Score=116.52 Aligned_cols=217 Identities=13% Similarity=-0.011 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
+++++|...++++.+.+.. +...+..+...+...|++++|...++++.+.++. +...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666665332 4555556666666666777777777776666543 4555666666666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD 532 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 532 (658)
++..+.... +...+..++..+...|++++|+..++++.+...+.++..+..+...+...|+.++|...+.++....+.+
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 776665322 1222222333344566777777777776654322234445556666667777777777777766555555
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
....+.+...|+..|+ +|...++.+.+. ...+....+ +...+.-.|+.+.+... +++.+.
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6666666666666663 666656555441 112222222 33344555665555554 666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=102.64 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=169.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
.....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34567788888999999999999999999887543 567888889999999999999999999988643 3566777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
..+...|++++|...+++..+... ......+..+...+...|++++|...+++.....+.+...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 889999999999999999987532 2234567778888899999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999886 345667777888889999999999998887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-07 Score=96.20 Aligned_cols=303 Identities=16% Similarity=0.120 Sum_probs=214.6
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
+...-...++...|++++|...++.... ...............+.+.|+.++|..++..+++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEK------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhh------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445556788999999999999987654 3344557778889999999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCC
Q 006154 175 KGHSVSIHAWNNFLSHLVKL-----NEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL-EEALSLYYRMLKSGIW 248 (658)
Q Consensus 175 ~g~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~ 248 (658)
.++. +..-|..+..+..-. .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|++
T Consensus 67 rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 67 RNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred HCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 8643 555555666655222 25678889999887652 4433333333223322233 3456667777887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhcc-cccC----------CcCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGV-MSGD----------SVLPNS--VTHNCIINGFCKLGRVEFAEEIRYAM 315 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~ 315 (658)
. +++.+-..|......+-..+++..+.. +... .-+|.. .++..+...|...|++++|.+.+++.
T Consensus 144 -s--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 144 -S--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred -h--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 455566666655555555555555311 1111 123444 34566678889999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 316 IKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 316 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
.++. |..+..|..-.+.|-+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|...
T Consensus 221 I~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 221 IEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred HhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 9884 444788999999999999999999999999987544 66677778888999999999999999888776533322
Q ss_pred h--------HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 396 T--------YSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 396 ~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
. ......+|.+.|++..|++.|..+.+.
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 244567888999999999888877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-07 Score=91.23 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 515 LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFS--------EMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+..+..++....+..+. ...+...++......|+++.|.+++. .+.+.+..|-. ...+...+.+.++.+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCc
Confidence 44455555554444444 34444455555555555555555555 33333333322 223334444444444
Q ss_pred HHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 586 QARELMKVMILH--GIIPD----YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 586 ~A~~~~~~~~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
.|..++.+.+.. .-.+. ..++.-+...-.+.|+-++|...++++.+. -++|..+...++.+|+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 444444443321 00011 112222222233445555555555555553 23444555555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-07 Score=89.26 Aligned_cols=451 Identities=14% Similarity=0.083 Sum_probs=255.4
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.....+=++.....+++++|.+...+++. ..|.++.++..-+.+..+.+++++|+.+.+.-.
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~------------------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILS------------------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHh------------------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 34566667778888899999988888876 567788888888889999999999986555432
Q ss_pred hCCCccCHHhHHH--HHHHH--HhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 174 VKGHSVSIHAWNN--FLSHL--VKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 174 ~~g~~~~~~~~~~--ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
.. .+.+. +=.+| .+.+..++|...++-.. +.+..+...-...+.+.|++++|.++|+.+.+++.+
T Consensus 74 ~~------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d- 142 (652)
T KOG2376|consen 74 AL------LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD- 142 (652)
T ss_pred hh------hhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-
Confidence 11 11111 22333 46788999988888222 123445666667788899999999999999877543
Q ss_pred ChhhHHHHHHHH-HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCC-----
Q 006154 250 NVVCFNMIINEA-CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI---INGFCKLGRVEFAEEIRYAMIKAGI----- 320 (658)
Q Consensus 250 ~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~----- 320 (658)
+ +...+.+- ...+-.-.+. +.+. .. ..| ..+|..+ ...+...|++.+|+++++...+.+.
T Consensus 143 d---~d~~~r~nl~a~~a~l~~~-~~q~---v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 143 D---QDEERRANLLAVAAALQVQ-LLQS---VP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred h---HHHHHHHHHHHHHHhhhHH-HHHh---cc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 2 21122111 1111111111 2332 11 112 2233333 3445678999999999988833210
Q ss_pred --C--CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH----HHHHHHHHHhcCCHH-HHHHHHHHHH
Q 006154 321 --D--CNV-----RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVV----YNSTIHWLFAEGDVE-GALFVLSDMI 386 (658)
Q Consensus 321 --~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~----~~~ll~~~~~~g~~~-~a~~~~~~~~ 386 (658)
. -+. ..-..|...+-..|+-++|..++....+.... |... -|.++..-....-++ .++..++...
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 0 011 11223445666789999999999988877543 4322 233332211111111 1122222211
Q ss_pred hCCC----------CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCCHHHHHHHHH
Q 006154 387 DKHI----------CPDHFTY-SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC--KSNNLAAAKQLLS 453 (658)
Q Consensus 387 ~~~~----------~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~ 453 (658)
.... .-..... +.++..+ .+..+.+.++....... .|. ..+.+++.... +...+.+|.+++.
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1000 0001111 1222222 22333343333332221 222 23333433322 2234677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE--------NMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
..-+....-.....-.++......|+++.|++++. .+.+.+.. +.+...+...+.+.++.+.|..++..+
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 77665333334555666777788899999999988 44444443 445556677777777777777777665
Q ss_pred HHcC---CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 526 QRIG---LL----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 526 ~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
..-- .. -...+..++..-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4321 11 22334444455566789999999999998863 57788888888888876 677777765543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-06 Score=90.55 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCC----------
Q 006154 57 SLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSV---------- 126 (658)
Q Consensus 57 ~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~---------- 126 (658)
..+|+.+..+-...+.+|+.+++|-.-+....+ ....+..+..++...+....+..++-.+++....
T Consensus 508 GyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLL 584 (1666)
T KOG0985|consen 508 GYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLL 584 (1666)
T ss_pred CCCccHHHHHHHHHccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHH
Confidence 345555544333345678888888777664332 3334566666666666666666655555543221
Q ss_pred -----ChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-----HHHHHHHhcCC
Q 006154 127 -----SPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN-----NFLSHLVKLNE 196 (658)
Q Consensus 127 -----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-----~ll~~~~~~g~ 196 (658)
....+.+.++.. ...+..-+..+...|.++|-+.+|++.+..+.... ..+ ... --+..|...-.
T Consensus 585 E~NL~~aPqVADAILgN---~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK--R~v-Vhth~L~pEwLv~yFg~ls 658 (1666)
T KOG0985|consen 585 EMNLVHAPQVADAILGN---DMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVV-VHTHLLNPEWLVNYFGSLS 658 (1666)
T ss_pred HHHhccchHHHHHHHhc---cccccccHHHHHHHHHhcchHHHHHHhcccHHHHH--HHH-HHhccCCHHHHHHHHHhcC
Confidence 223333443331 12223337778889999999999998887765421 011 011 11223344456
Q ss_pred HhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCChhhHHHHHHHHHhcC
Q 006154 197 IGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKS-----------GIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~~~~~li~~~~~~g 265 (658)
++.+.+.++.|...++..|..+.-.+..-|+..=-.+..+++|+..... ++.-|....--.|.+.|+.|
T Consensus 659 ve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~ 738 (1666)
T KOG0985|consen 659 VEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTG 738 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhc
Confidence 7788888888888777777776666666666655556666666665432 23345555556777788888
Q ss_pred CHHHHHHHHHH
Q 006154 266 DLEFALKLFRK 276 (658)
Q Consensus 266 ~~~~A~~~~~~ 276 (658)
++.+.+++.++
T Consensus 739 QikEvERicre 749 (1666)
T KOG0985|consen 739 QIKEVERICRE 749 (1666)
T ss_pred cHHHHHHHHhc
Confidence 87777766654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-07 Score=90.79 Aligned_cols=519 Identities=13% Similarity=0.110 Sum_probs=255.7
Q ss_pred HHHHHHhccCCchhhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHH
Q 006154 36 FRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALL 115 (658)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 115 (658)
++.|..+-+..-|..+-++..+-..-.|..|..---++...| +..+.+...+ - ..+ ...+-....-|.+++|..
T Consensus 748 fksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-RAlR~a~q~~-~--e~e--akvAvLAieLgMlEeA~~ 821 (1416)
T KOG3617|consen 748 FKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-RALRRAQQNG-E--EDE--AKVAVLAIELGMLEEALI 821 (1416)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-HHHHHHHhCC-c--chh--hHHHHHHHHHhhHHHHHH
Confidence 344444445556777776666655555555543222222222 2233333321 1 222 223333445678888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 006154 116 LMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN 195 (658)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 195 (658)
++.+..+ |..|=..|-..|.+++|.++-+.-.... -..+|......+-..+
T Consensus 822 lYr~ckR--------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 822 LYRQCKR--------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHH--------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhc
Confidence 8887654 5566677888899999998877543321 2356667777777788
Q ss_pred CHhHHHHHHHHHHhCC---------CC----------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006154 196 EIGRFWKLYKEMVSCG---------YV----------ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNM 256 (658)
Q Consensus 196 ~~~~a~~~~~~~~~~g---------~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 256 (658)
+.+.|++.|++..... .+ .|...|.--...+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888877632110 01 1222333333333445666666666655442 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhHHHHHH
Q 006154 257 IINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGI----DCNVRTYATLID 332 (658)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~ 332 (658)
+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+.....- -.....-..|.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es---------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES---------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc---------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566666677777777776651 1455556677777777777777777766542100 000000011111
Q ss_pred HHHhcC--ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCChhhHHHH
Q 006154 333 GYARGG--SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSD--------MIDK--HICPDHFTYSIL 400 (658)
Q Consensus 333 ~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 400 (658)
.....| +.-.|-++|++.- . -+...+..|.+.|.+.+|+++--+ ++.. ....|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111 1222333333321 0 122334456677777777654321 1222 233455556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----------C----------------CCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEE----------H----------------MVGDA----YSYNILINYLCKSNNLAAAKQ 450 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~----------~----------------~~~~~----~~~~~l~~~~~~~~~~~~A~~ 450 (658)
...++...++++|..++-...+- + -.|+. .....+...|.++|.+..|.+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 66666666666666665443321 1 01111 123344445555555555554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH---------H----HHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 451 LLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV---------Y----ENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---------~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
-|.+.-.+ -..+.++.+.|+.++..-+ | +-+....++.++.+...++.-|.+...++.
T Consensus 1167 KfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~ 1237 (1416)
T KOG3617|consen 1167 KFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDH 1237 (1416)
T ss_pred HHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHH
Confidence 44433221 1123334444443321100 0 111122344455555555555554444443
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-----------cCCHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK-----------FGCYQQ 586 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~ 586 (658)
--.++.............|.. + .|-.++|-..+.++.... ....-++.|-.-..+ ..+..+
T Consensus 1238 LanFY~~cAqiEiee~q~ydK---a---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~ 1309 (1416)
T KOG3617|consen 1238 LANFYKSCAQIEIEELQTYDK---A---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAAD 1309 (1416)
T ss_pred HHHHHHHHHHhhHHHHhhhhH---H---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333333222221111111111 1 123344444444444322 112223322221111 125555
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 587 ARELMKVMILHGIIP----DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 587 A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++-...|.+..+-| -...|..+|..+....+++.|.+.+++|..+
T Consensus 1310 ~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1310 GIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 566666666654433 3557888999999999999999999999987
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-07 Score=83.22 Aligned_cols=312 Identities=13% Similarity=0.055 Sum_probs=227.1
Q ss_pred CCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 319 GIDCNVRTYATLIDGYAR--GGSSEEALRLCDEMVKRG-LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 319 ~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
.++|+..+....+.++.. .++-..|...+-.+.... +.-|......+..++...|+..+|...|++....++. +..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~ 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence 345555555555555543 455555555554444333 3446777888999999999999999999998764221 222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
........+.+.|+.+....+...+....- .....|..-+..+...++++.|+.+-.+.++... .+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 233334445678888888888887766421 1333444445556677889999999988887532 24445555556778
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH-HHHHH-cCCHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI-NGYFI-NGKIAEAF 553 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~ 553 (658)
..+++++|.-.|+...... +-+...|..|+.+|...|++.+|...-+...+.-+.+..+...+. ..+.- ..--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999999999988752 347889999999999999999999998888877666777776663 33332 23457899
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 554 AMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 554 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++++.+.. .|+ ....+.+...+...|..+.++.++++... ..||....+.|...+...+.+++|.+.|...+.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr- 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR- 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 999988874 566 44567788899999999999999999987 478999999999999999999999999999887
Q ss_pred CCCCCHHH
Q 006154 633 GVSPDNQT 640 (658)
Q Consensus 633 g~~p~~~~ 640 (658)
+.|....
T Consensus 500 -~dP~~~~ 506 (564)
T KOG1174|consen 500 -QDPKSKR 506 (564)
T ss_pred -cCccchH
Confidence 5666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=81.36 Aligned_cols=49 Identities=41% Similarity=0.679 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=80.79 Aligned_cols=50 Identities=40% Similarity=0.596 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-09 Score=103.49 Aligned_cols=251 Identities=22% Similarity=0.180 Sum_probs=158.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEE-----HM-VGDAY-SYNILINYLCKSNNLAAAKQLLSSMIVR-----GLI-P 462 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-p 462 (658)
+...+...|...|++++|..+++..++. |. .|... ..+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555666666666666666555443 10 11221 2234566677777777777777776643 211 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 006154 463 -DIITYGTLIDGYCKGGNIEGAVQVYENMKKV-----EK-KPNL-VIYNSIINGLCKDASLDAAKSLLQASQRI-----G 529 (658)
Q Consensus 463 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 529 (658)
-..+++.|..+|.+.|++++|...++...+. +. .|.. ..++.+...++..+++++|..+++...+. +
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345566667778888887777777665431 11 1122 23556667777888888888888765432 2
Q ss_pred CC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 006154 530 LL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GI---AVNKVGYNILINFLCKFGCYQQARELMKVMIL--- 596 (658)
Q Consensus 530 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 596 (658)
.. -..+++.|...|...|++++|.+++++++.. +- .-....++.|...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3567888999999999999999999888542 11 11244567888888888898888888887553
Q ss_pred -cCC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 006154 597 -HGI-IPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLS------GVSPDNQTYNAIIS 646 (658)
Q Consensus 597 -~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~ 646 (658)
.|. .|+ ..+|..|...|.+.|++++|.++.+..... ...|+.........
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 232 222 457888888999999999999988877632 34455554444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-09 Score=105.39 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----C--CC-
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKA---GID----CNVRTYATLIDGYARGGSSEEALRLCDEMVKRG----L--MP- 357 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~--~p- 357 (658)
++.++..++..+++++|..++....+. -+. .-..+++.|...|.+.|++++|.+++++..... - .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344444455555555555554443332 001 113455666666666666666666666554321 1 11
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDK----H--ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
....++.+...|.+.+...+|.++|.+.... | .+-...+|..|...|...|+++.|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234455555566666666565555544321 1 12233456666667777777777777666655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-07 Score=88.14 Aligned_cols=415 Identities=12% Similarity=0.034 Sum_probs=242.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 006154 100 IVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 100 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 179 (658)
-..+....|+|+.|...+-+.+. -.|+|...|.--..+|...|++++|.+=-.+-.+..+ .
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~ 68 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-D 68 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-c
Confidence 34567778999999999988887 5677888899999999999999999888777777632 2
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCChhh
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEA---LSLYYRMLKS---GIWPNVVC 253 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~m~~~---~~~p~~~~ 253 (658)
-+..|+....++.-.|++++|+..|.+-++.. +.|...++-+..++.......+. -.++..+... .......+
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 56789999999999999999999999988864 34566667666666211000000 0011111100 00001112
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHhcc--cccCC-------cCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 254 FNMIINEACQV----------GDLEFALKLFRKMGV--MSGDS-------VLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 254 ~~~li~~~~~~----------g~~~~A~~~~~~~~~--~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|..++..+-+. .++..+...+..... ....+ ..|. .+.. .......+
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d 213 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIED 213 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccch
Confidence 22222222111 111111111111000 00000 0000 0000 00000000
Q ss_pred HHH-cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 315 MIK-AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD 393 (658)
Q Consensus 315 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (658)
+.+ .....-..-+..+.+...+..+++.|.+-++...... -+..-++....+|...|.+.++...-....+.|-. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 000 0000112234556777777888888888888877764 35555666777788888877777766666655432 1
Q ss_pred hhhHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006154 394 HFTYSI-------LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-I 465 (658)
Q Consensus 394 ~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~ 465 (658)
..-|+. +..++.+.++++.++..|.+.+.....|+. ..+....+++........-.+ |.. .
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~ 359 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAE 359 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence 222222 333555567778888888776665444332 223334444444444333322 221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
-...-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|.+-.+...+..+.....|.-=+.++..
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 12222455677888888888888888775 33777888888888888888888888888888877777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006154 546 NGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~ 563 (658)
..++++|.+.|++.++.+
T Consensus 439 mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778888888888888753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-08 Score=84.62 Aligned_cols=198 Identities=14% Similarity=-0.014 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
...|.-.|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++.++.... +....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4455667777888888888888887764 334667777788888888888888888887776433 45577778888888
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEA 343 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 343 (658)
.|++++|...|++. +......--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.+...+.|++-.|
T Consensus 116 qg~~~eA~q~F~~A--l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERA--LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHH--HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888885 3333233335677777777788888888888888888775 44556667777788888888888
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
...++.....+. ++..+.-..|..-...|+.+.+-+.=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888777665 6777777777777777777777666555554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=84.74 Aligned_cols=205 Identities=14% Similarity=0.040 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|.-.|.+.|+...|..-+++.++... .+..++..+...|.+.|+.+.|.+.|++..+..+. +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 33455556666666666666666666532 24455666666666666666666666666665332 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
.|++++|...|+++.....- ...+|..++-+..+.|+.+.|...|++.++.. +-...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 66666666666666654332 55666666666666777777777777666643 2234455566666666777777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
+++.....+. ++..+....|..-...|+.+.+.++=..+.. .-|.+.-+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 6666665543 5666666666666666666666666555554 344444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=96.88 Aligned_cols=477 Identities=12% Similarity=0.050 Sum_probs=279.3
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 208 (658)
...|..++.+..-.+.-..+|..|...|...-+...|.+.|+...+.+.. +..++......|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34455556655556666778888888888888888899999988887543 77788888888999999988888732222
Q ss_pred hCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC
Q 006154 209 SCGYVENV--NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL 286 (658)
Q Consensus 209 ~~g~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 286 (658)
+.. +--. ..|..+.-.+.+.++...|+.-|+...+..+. |...|..+..+|...|++..|.++|.++ .. +.
T Consensus 554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA---s~--Lr 626 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA---SL--LR 626 (1238)
T ss_pred hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh---Hh--cC
Confidence 211 1111 12333344566778888888888888876544 6778888999999999999999999773 22 23
Q ss_pred CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------
Q 006154 287 PN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAG------IDCNVRTYATLIDGYARGGSSEEALRLCDEMVK------- 352 (658)
Q Consensus 287 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 352 (658)
|+ ...--...-..|..|.+.+|...+....... ...-..++-.+...+...|-..+|.+.+++-.+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222223344567888888888887766431 111122333333333334444444444443322
Q ss_pred CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---H---HHHHHHHHHHHcCCC
Q 006154 353 RGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV---K---QAFKLHNQVLEEHMV 426 (658)
Q Consensus 353 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~~~ 426 (658)
.....+...|-.+.+ |..+|-... .. .|+......+..-.-..+.. + -+.+.+-.-.+ ..
T Consensus 707 h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 211122223322222 222222222 00 12222222222211112211 1 01111111111 11
Q ss_pred CChhhHHHHHHHHHh-------c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 006154 427 GDAYSYNILINYLCK-------S-NNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN 498 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~-------~-~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (658)
.+..+|..++..|.+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+..... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 123444444444433 1 22346777777766642 2366777776654 66678888887777666542 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH--H--HCCCCCChHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM--R--NVGIAVNKVGYNIL 574 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~p~~~~~~~l 574 (658)
..+|..+...+.+..+++-|...|.......|.+...|-.........|+.-++..+|.-- . ..|-.|+..-|-..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 6788888888888999999999999999998888888888887778888888888888662 2 12334444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL---------HGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
......+|+.++-+...+.+-. .|.+.+...|.+.....-+.+.+.+|.+...+..
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445566666655544443322 1344456677777777777777777777766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-07 Score=88.98 Aligned_cols=396 Identities=14% Similarity=0.105 Sum_probs=193.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH
Q 006154 189 SHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN-VVCFNMIINEACQVGDL 267 (658)
Q Consensus 189 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 267 (658)
.+....|+++.|+..|.+.+... ++|-..|.--..+|...|++++|.+=-.+-++. .|+ .-.|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34556788888888888888765 447777877888888888888887766666554 444 34777888888888888
Q ss_pred HHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHH-HH------HHHHHHc---CCCCChhhHHHHHHHHHhc
Q 006154 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAE-EI------RYAMIKA---GIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~------~~~~~~~---~~~~~~~~~~~li~~~~~~ 337 (658)
++|+.-|.+ -... -+.+...++.+.+++. .+.+. +. +..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~---GL~~-d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 87 EEAILAYSE---GLEK-DPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHH---Hhhc-CCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888888877 3332 1224555666666551 11110 00 0000000 0000011122222211110
Q ss_pred ----------CChHHHHHHHHHH-----HHCC-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCh
Q 006154 338 ----------GSSEEALRLCDEM-----VKRG-------LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID-KHICPDH 394 (658)
Q Consensus 338 ----------g~~~~A~~~~~~~-----~~~g-------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 394 (658)
.++..+.-.+... ...| ..|... . ........++.+ .....-.
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-----------~---~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ-----------E---HNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc-----------c---CCCCCccchhHHHHHHHHhh
Confidence 0011111111000 0000 000000 0 000000000000 0000001
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG------ 468 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~------ 468 (658)
.-...+.++..+..+++.|.+.+....+.. .+..-++....+|...|.+.+.........+.|.. ...-|+
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 112334444445555555555555554443 23333444444455555444444444444333321 111111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------------------------HHHHHHHHHHhcCCHHHHHHHH
Q 006154 469 -TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV-------------------------IYNSIINGLCKDASLDAAKSLL 522 (658)
Q Consensus 469 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~a~~~~ 522 (658)
.+..+|.+.++++.++..|.+.......|+.. -...-...+.+.|++..|...+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 12223344445555555555444332222211 1112244556777888888888
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 523 QASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
.++....|.|...|....-+|.+.|.+..|+.-.+..++.. ++....|.-=..++....++++|.+.|++.++. .|+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~ 458 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS 458 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 88888777788888888888888888888877777777652 233444555555666666777777777777764 455
Q ss_pred HHHHHHHHHHHHh
Q 006154 603 YVTYTTLVTRFSK 615 (658)
Q Consensus 603 ~~~~~~l~~~~~~ 615 (658)
..-+..-+.-|..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 4444443333333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-08 Score=85.41 Aligned_cols=351 Identities=13% Similarity=0.085 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNM-IINEAC 262 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~ 262 (658)
+.+.+..+.+..+++.|++++..-.+.. +.+......+...|....++..|-+.++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444555555556666666555555442 124444455555555555666666666665443 233333321 123344
Q ss_pred hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 263 QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIIN--GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
+.+.+..|+++... |... |+...-..-+. .....+++..+..+.++....| +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~---~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFL---LLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHH---hcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 55555666665555 2221 11111111111 1123444555555444443211 223333333334455566
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHhcCChHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFT----YSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~ 416 (658)
+.|.+-|+...+-|--.....|+..+. ..+.|+.+.|++...+++++|++-.+.. -.-.++. ...|+ -..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHH
Confidence 666555555544332223344444332 3344555555555555555544311100 0000000 00000 0000
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 417 HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
.... -+..+|.-...+.+.++++.|.+.+-.|.-+. ...|++|...+.-. -..+++.+..+-+.-+.+..+
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0000 01123333444566778888887777765432 23455665544321 123455555555555555434
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
....|+..++-.||+..-++-|-+++.+-...... +...|+.|=......-..++|++-++.+.
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567777777888888777777776654333222 44444443333333445666666555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-05 Score=82.50 Aligned_cols=533 Identities=16% Similarity=0.149 Sum_probs=258.6
Q ss_pred cccccccCCCCCCCCchhhhHHHHHHhccCCch-hh-hhhhCCC-CCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCC
Q 006154 16 LSRAFHVGKQFANPSTEDIVFRAICVNLRQRKW-KI-LEQMAPS-LTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSH 92 (658)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~-l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~ 92 (658)
+.+..-..-+..||+-.++++..+...-..-.. +. +...... ...++|..|=++ +..+.-+.+.+.....+ ..
T Consensus 795 ~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkR--NRLklLlp~LE~~i~eG--~~ 870 (1666)
T KOG0985|consen 795 LQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKR--NRLKLLLPWLESLIQEG--SQ 870 (1666)
T ss_pred HHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhh--hhHHHHHHHHHHHHhcc--Cc
Confidence 334444455567777666655544222111010 11 1222233 345555555443 33556666666555433 67
Q ss_pred CHHhHHHHHHHHHcCCCchHH-H--------HHHHHHHhcCC-----------CChHHHHHHHHhhccCCCCCHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDA-L--------LLMGNLMSANS-----------VSPLEFLEGLLDSYEICKATPAVFDAL 152 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a-~--------~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~l 152 (658)
++.+|++++.++..+++-.+- . ....+..+..+ ....+. ++. + .....|-.+
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el----I~v---c-NeNSlfK~~ 942 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL----INV---C-NENSLFKSQ 942 (1666)
T ss_pred chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH----HHh---c-CchhHHHHH
Confidence 888999999999987654431 0 01111111100 001111 110 1 111234444
Q ss_pred HHHHHhcCChhHHHHHH-----------HHHHhCCC--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCcCHH
Q 006154 153 VRACTQIGATEGAYDVI-----------QKLKVKGH--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG--YVENVN 217 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~-----------~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~ 217 (658)
.+-+.+..+.+.-.+++ ++....+. ..|+......+.++...+-+.+-++++++++-.. +..+..
T Consensus 943 aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~n 1022 (1666)
T KOG0985|consen 943 ARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRN 1022 (1666)
T ss_pred HHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchh
Confidence 44444444433322222 22222221 2345555555666666666666666666665321 122233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHH
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIIN 297 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 297 (658)
..|.|+-.-.+. +...+.++.+++..... | .+.......+-+++|..+|++ +..+....+.++.
T Consensus 1023 LQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkk--------f~~n~~A~~VLie 1086 (1666)
T KOG0985|consen 1023 LQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKK--------FDMNVSAIQVLIE 1086 (1666)
T ss_pred hhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHH--------hcccHHHHHHHHH
Confidence 344444333332 33444555555433211 1 122333444556666666665 2223334444443
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH
Q 006154 298 GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG 377 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~ 377 (658)
..+.++.|.+.-++.. ....|..+..+-...|...+|.+-|-+. -|+..|..+++...+.|.+++
T Consensus 1087 ---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1087 ---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred ---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHH
Confidence 2344555554444433 2345666666666666666666554332 255566666666666666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIV 457 (658)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (658)
-...+.-..++.-.|... ..|+-+|++.++..+..++. ..|+......+.+-|...+.++.|.-+|.
T Consensus 1152 Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---- 1218 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---- 1218 (1666)
T ss_pred HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH----
Confidence 666555555444333332 34555666666655544332 12444455555555666666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITY 536 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 536 (658)
+...|..|...+...|++..|...-++. .+..+|..+-.+|...+.+.-| ++...+.. ...-.
T Consensus 1219 -----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeL 1282 (1666)
T KOG0985|consen 1219 -----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADEL 1282 (1666)
T ss_pred -----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhH
Confidence 3344566666666666666666554443 2456666666666665554433 22222222 55666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------CCHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH-GII------PDYVTYTTL 609 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~------p~~~~~~~l 609 (658)
..++..|-..|-+++-+.+++..+... ....-.|+.|.-.|.+- ++++..+.++-.-.. +++ -....|+-+
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 777777878888888777777665431 22344566666556554 233333333222111 110 123445555
Q ss_pred HHHHHhCCChHHH
Q 006154 610 VTRFSKNCSPEEV 622 (658)
Q Consensus 610 ~~~~~~~g~~~~A 622 (658)
...|.+-..++.|
T Consensus 1361 vfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhhhhHH
Confidence 5555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-06 Score=84.59 Aligned_cols=446 Identities=14% Similarity=0.039 Sum_probs=223.9
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHh-HHHHHHHHHcCCCchHHHHHHHHHHhc----CCCChHHHHHHHHhhccCCCCCH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLES-SCAIVHLLVNWRRFDDALLLMGNLMSA----NSVSPLEFLEGLLDSYEICKATP 146 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 146 (658)
.+.+.|..|.+-... .|+.++ +..+..+...+|++--|++.+..+-+- .-+...++.+.....+++...+-
T Consensus 458 ~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 458 GDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred CchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 456777777765432 445444 566777777788887776655433210 11222333444444444444433
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
+-..+++. .-..++.+|..+|-+-- .-...+.+|....++++|+.+-+. .|.+.-...-.+.+.++
T Consensus 534 ykvra~la--il~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 534 YKVRAMLA--ILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHHHHH--HHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHH
Confidence 33233322 33345667766664321 123456667777777777766543 23333334445566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChH
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVE 306 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 306 (658)
...|+-++|-++- .+ +-.+ .+.|..|.+.|.+..|.+.... ...+..|......+..++.+..-++
T Consensus 600 ~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n-----~~~l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 600 MDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALN-----DEELLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcC-----HHHhhccHHHHHHHHHHHHhhHHHH
Confidence 7777777766542 11 1112 2457778888888777765533 1113345555555666666666666
Q ss_pred HHHHHHHHHHHc----------------------CCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 307 FAEEIRYAMIKA----------------------GIDCNVRTY-ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 307 ~A~~~~~~~~~~----------------------~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
.|-++|+++..- .+|..+++. ......+...|+++.|...|-+... ..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~ 736 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LI 736 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HH
Confidence 666666655411 001111110 1112222233333333333322110 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 364 STIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN 443 (658)
Q Consensus 364 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (658)
..+.+.....++.+|+.+++.+.++... ..-|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 2233344455566666666655544221 2234455556666666666666654321 2344556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQ 523 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 523 (658)
+++.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+...++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 6666665554432 222334444444444555666666665553332 122 23455666666666555544
Q ss_pred HHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 524 ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
+--.. .-..+...+..-|-..|++..|...|-+..+ |.+-++.|...+-+++|.++-
T Consensus 875 k~h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh--hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 32111 1334445555666666777777666654443 445556666666666666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-06 Score=88.31 Aligned_cols=423 Identities=15% Similarity=0.129 Sum_probs=252.8
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-C--------C
Q 006154 144 ATPAVFDALVR--ACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-G--------Y 212 (658)
Q Consensus 144 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g--------~ 212 (658)
.++.+-..++. .|...|+.+.|.+-.+-+.. ...|..|...+.+.++.+-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 35556666654 56788999999988887654 468999999999988888777666655421 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.++ .+-..+...-...|.+++|..+|++.++. ..|=..|...|.+++|+++-+. .. .+. -..||
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~----~D-RiH-Lr~Ty 861 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAET----KD-RIH-LRNTY 861 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhh----cc-cee-hhhhH
Confidence 122 12222222334678999999999988763 3444567778999999998876 11 122 23456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
.....-+-..++.+.|++.|++.. .|--.++..|.. ++.....+.+.+ .|...|.-....+-..
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhcc
Confidence 666677777888888888887653 222222222211 112222222222 2455566666666678
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
|+.+.|+.+|....+ |-.+++..|-.|+.++|-.+-++-. |....-.+.+.|-..|++.+|...|
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888887764 4566777778888888877765532 5566667888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChH----------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIE----------------GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~----------------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.+... +...|..| +.++++ .|-+.|++. |.. ....+..|-+.|.+.
T Consensus 991 TrAqa---------fsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 991 TRAQA---------FSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHH---------HHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchH
Confidence 76543 33333322 222222 222223221 110 112233455666666
Q ss_pred HHHHHHH---------HH-HHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 517 AAKSLLQ---------AS-QRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 517 ~a~~~~~---------~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+|+++-= -+ ....+. |+...+.-.+.++...++++|..++-...+ |...+.. |+..+..
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCc
Confidence 6654421 11 122333 777788888888888888888888776665 2222332 3333443
Q ss_pred HHHHHHHHHHH-cCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCc
Q 006154 586 QARELMKVMIL-HGIIPDYV----TYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAED 656 (658)
Q Consensus 586 ~A~~~~~~~~~-~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 656 (658)
--.++-+.|.- +.-.|+.. ....+...|.++|.+..|.+-|-+.-.+ -.-++++.++|+.++
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 34444444431 21233433 4566677888999999888766554321 124567777887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-08 Score=92.33 Aligned_cols=215 Identities=15% Similarity=0.010 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHHHHCC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 339 SSEEALRLCDEMVKRG-LMPN--NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|.+..+..+. +...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555544321 1111 233455555555566666666666665554322 44555556666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
.|+..++..+. +..++..+...+...|++++|.+.+++..+.. |+..............+++++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 66666554433 34455555555556666666666666655542 221111111112223455666666665443321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRI-------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.|+...+ .+. ....|+...+ ..++.+.+. .+....+|..++..+.+.|++++|...|++..+.
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1221111 111 1223333322 122222211 1113345666666666666666666666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-06 Score=86.39 Aligned_cols=462 Identities=10% Similarity=-0.025 Sum_probs=244.1
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFD 150 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (658)
+++...|+..|-.+.+.. +--...|..+++++....+..+|.+.|+...+ -.+.+..+..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe------------------LDatdaeaaa 530 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE------------------LDATDAEAAA 530 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------CCchhhhhHH
Confidence 455666777777666543 22244788888888877777778888877765 5666778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHS-VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 229 (658)
.....|++..+++.|..+.-..-+.... .-...|....-.|.+.++...|+..|+...+.. +-|...|..+..+|.++
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 8899999999999998884433332111 112234444556677888999999999988865 45788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhcccccC---CcCCChhhHHHHHHHHHhcCCh
Q 006154 230 CKLEEALSLYYRMLKSGIWPNVV-CFNMIINEACQVGDLEFALKLFRKMGVMSGD---SVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 230 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 305 (658)
|.+..|.++|.+.... .|+.. .---.....+..|.+.+|+..+..+...... +..--..++..+...+...|-.
T Consensus 610 Gry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred CceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999887764 34432 2222233456778899888888774211110 0111123333333333334444
Q ss_pred HHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcCChH------HHHHHH-HHHHHCCC----------------
Q 006154 306 EFAEEIRYAMIK-------AGIDCNVRTYATLIDGYARGGSSE------EALRLC-DEMVKRGL---------------- 355 (658)
Q Consensus 306 ~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~~~~~g~---------------- 355 (658)
..|.+.++...+ +....+...|-.+.+++.-.-..+ ....++ .+....+.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 444444433322 211112222222221111000000 000000 01111111
Q ss_pred ----CCcHhHHHHHHHHHHh------c--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 356 ----MPNNVVYNSTIHWLFA------E--GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 356 ----~p~~~~~~~ll~~~~~------~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
..+..+|..++..|.+ . .+...|+..+.+.++..- -+..+|+.|.-. ...|++.-+.--|-+-...
T Consensus 768 hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 768 HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 1123334444333322 1 122355666666555321 244455554433 3334554444444333333
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH
Q 006154 424 HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK----VEKKPNL 499 (658)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 499 (658)
.+. ...+|..+.-.+.+..+++-|...|...+...+ .+...|-.........|+.-++..+|..-.+ .|--++.
T Consensus 846 ep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 EPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccc-chhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 222 455666666666677777777777777665422 2444444433333445666666666654211 1222232
Q ss_pred HHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASL----------DAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.-+.....-....|+. ..|.-.++......+.+..+|...+...-..+.+..|.+...+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2222222222233332 23333444445555556677777777666677777766666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-07 Score=79.44 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=180.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH-HHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL-VIYALC 227 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~ 227 (658)
+++.+..+.+..++++|++++....+..++ +......|...|.+..++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 455666667778888888888888776433 6666777777888888888888888888765 355444432 234556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCCh
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVC--FNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 305 (658)
+.+.+.+|+.+...|... |+... ...-.......+|+..+..++++ ..+.+ +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ---lp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ---LPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHh---ccCCC---ccchhccchheeeccccH
Confidence 778888888888777653 22221 11111223456888888888887 43321 344444455556688888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------cH-------------
Q 006154 306 EFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP-------------NN------------- 359 (658)
Q Consensus 306 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~------------- 359 (658)
+.|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++.++|++. |.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 88888888887764333455666544 3446788888888888888876531 11
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006154 360 --VVYNSTIHWLFAEGDVEGALFVLSDMIDKH-ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILI 436 (658)
Q Consensus 360 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 436 (658)
..+|.-...+.+.|+.+.|.+.+.+|--+. ...|++|...+.-. -..+++.+..+-+.-+++.++- ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 112222233456677777777776664332 33456665544321 1234455555555566665553 455677777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006154 437 NYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~ 454 (658)
-.||+..-++-|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 777777777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-07 Score=90.11 Aligned_cols=200 Identities=12% Similarity=-0.031 Sum_probs=126.2
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..|...+.++.+.|++++|...+++.++ ..|.++.+|..+...+...|++++|.+.|++..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45577777888888888888888888776 466778888888888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC 253 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 253 (658)
+..+. +..+|..+...+...|++++|.+.+++..+.. |+..............++.++|...|++..... .|+...
T Consensus 126 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~ 201 (296)
T PRK11189 126 ELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG 201 (296)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH
Confidence 76433 56677777778888888888888888888753 332211222222345667888888886654331 223222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccccCCc--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006154 254 FNMIINEACQVGDLEFALKLFRKMGVMSGDSV--L-PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG 319 (658)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 319 (658)
+ .+ .....|+...+ +.++.+..-..... . .....|..+...+.+.|++++|...|++..+.+
T Consensus 202 ~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 202 W-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 22 22334554433 23333110111111 1 123467777777777777777777777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-05 Score=89.94 Aligned_cols=370 Identities=12% Similarity=0.052 Sum_probs=221.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNV-VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
....+...|++.+|......... .+.. .............|+++.+...++. +.......+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~---lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNA---LPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHh---CCHHHHhcCcchHHHHHHHHH
Confidence 34456667777777665443321 1110 1112222334456788887777776 321111112223344455566
Q ss_pred hcCChHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGI------DCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHW 368 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~ 368 (658)
..|++++|...+....+.-- .+. ......+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 78899999888887754310 111 112222334556789999999999887663111121 234556666
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChhhHHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDK----HI-CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE----HMV--G-DAYSYNILI 436 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 436 (658)
+...|++++|...+.+.... |. .....++..+...+...|++++|...+++..+. +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77889999999888887643 11 111234455666778899999999988876553 211 1 122344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH-----HHHH
Q 006154 437 NYLCKSNNLAAAKQLLSSMIVR--GLIPD--IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIY-----NSII 506 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~ 506 (658)
..+...|++++|...+.+.... ...+. ...+..+...+...|+++.|...+.......... ....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999888876553 11121 2334445566778899999999888775421110 11111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDA----ITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN-KVGYNILINF 577 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~ 577 (658)
..+...|+.+.|...+........... ..+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334557888888888776554322211 12456777888899999999999887652 32222 3456677788
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 006154 578 LCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+.|+.++|...+.++.+.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999998875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-06 Score=87.20 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=118.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 515 (658)
+.+......+.+|+.+++.+..+.. -..-|..+.+-|...|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566677777777777766532 22335556677777788888877775542 234566777788888
Q ss_pred HHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 516 DAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
..|.++-++. .++. ....|-.-..-+-+.|++.+|.++|-.+.. |+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 8777765543 3344 555666666666777777777777654432 332 356677778777777766543
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 595 ILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 595 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
-- ..-..|...+..-|...|+.+.|.+-|-+.. -|.+-++.|..++.|++|
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDA 927 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHH
Confidence 21 1123456667777888999999987765543 345555566666665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-06 Score=87.01 Aligned_cols=203 Identities=9% Similarity=-0.060 Sum_probs=116.9
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..|..++..+...++.+.+...+....+. .+...............+...|++++|.+.+++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l 70 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQA---------------LAARATERERAHVEALSAWIAGDLPKALALLEQLL 70 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH---------------hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666666667777765555544431 00111112233334456677788888888888887
Q ss_pred hCCCccCHHhHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 174 VKGHSVSIHAWNNFLSHLV----KLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
+..+. +...+.. ...+. ..+....+.+.++.. ....+........+...+...|++++|...+++..+....
T Consensus 71 ~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~- 146 (355)
T cd05804 71 DDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD- 146 (355)
T ss_pred HHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Confidence 76432 4444432 11222 234444555554441 1111222334445556677788888888888888776422
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC-cCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS-VLPNS--VTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
+...+..+..++...|++++|...+++. .... ..|+. ..|..+...+...|++++|..++++....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~---l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESW---RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhh---hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4556777777888888888888888773 2211 11222 23446677777888888888888777533
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-06 Score=80.30 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=200.7
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+.+++-...++..+...|++.+|...+...++ +.|.+-.++..-...|...|+-.-|+.=+.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~ 96 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLS 96 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHH
Confidence 34566677889999999999999999998887 677777777777889999999999999999
Q ss_pred HHHhCCCccCHHhHH-HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 171 KLKVKGHSVSIHAWN-NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
+.++. +||...-. .-...+.++|++++|..=|+.++... |+..+- ..+..+.-..++-..
T Consensus 97 rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~------------ 157 (504)
T KOG0624|consen 97 RVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV------------ 157 (504)
T ss_pred HHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH------------
Confidence 98886 55553322 23456788999999999999998764 332111 111111111111111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
....+..+...|+...|+.....+ .+- .+-|...|..-..+|...|++..|+.=++...+.. ..+..+.--
T Consensus 158 ----l~~ql~s~~~~GD~~~ai~~i~~l---lEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~yk 228 (504)
T KOG0624|consen 158 ----LVQQLKSASGSGDCQNAIEMITHL---LEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYK 228 (504)
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHH---Hhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 112233344556777777776663 322 23356666666777777777777776666666554 345555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGC 409 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (658)
+-..+...|+.+.++....+..+. .||....... | ..+.+..+.++.|.+ ....++
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~ 284 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKH 284 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhh
Confidence 666667777777777777777665 3443322111 1 111222222222221 233455
Q ss_pred hHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYS---YNILINYLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 485 (658)
+.++++..+...+..+...... +..+-.++...+++.+|++...+..+. .| |..++.--..+|.-...++.|+.
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5666666666666544322222 333445556667777777777766653 23 36666666677777777777777
Q ss_pred HHHHHHhC
Q 006154 486 VYENMKKV 493 (658)
Q Consensus 486 ~~~~~~~~ 493 (658)
-|+...+.
T Consensus 363 dye~A~e~ 370 (504)
T KOG0624|consen 363 DYEKALEL 370 (504)
T ss_pred HHHHHHhc
Confidence 77777764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-06 Score=86.39 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CcH--hHHHHHHH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM-PNN--VVYNSTIH 367 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~~--~~~~~ll~ 367 (658)
....+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++....... |+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344556666667777777777666654 444556666666666777777777776666554211 121 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006154 368 WLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~ 387 (658)
.+...|++++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 66667777777777766643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-05 Score=75.62 Aligned_cols=427 Identities=12% Similarity=0.144 Sum_probs=240.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.+..+|..|++-+..+ ..+++.+.++++... ++-++..|...+..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 5788889999999887766 889999999998875 4457788888899999999999999999888865 35666777
Q ss_pred HHHHHHHhc-CCHHH----HHHHHHHH-HhCCCCCChh-hHHHHHHHHHh---------cCCHHHHHHHHHHhcccccCC
Q 006154 221 LVIYALCKE-CKLEE----ALSLYYRM-LKSGIWPNVV-CFNMIINEACQ---------VGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 221 ~l~~~~~~~-g~~~~----A~~~~~~m-~~~~~~p~~~-~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 284 (658)
..+.--.+. |+... ..+.|+-. .+.|+++-.. .|+..+..+-. +.+++...+++++ +....
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr---al~tP 167 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR---ALVTP 167 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH---HhcCc
Confidence 666543332 22222 22333332 3445443332 35555543321 2234445555555 22211
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCcHhH-
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK--RGLMPNNVV- 361 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~- 361 (658)
+ +++++-.+=|....+ ..|..|-.-++ --+...+..|.++++++.. .|+.....+
T Consensus 168 m-----------------~nlEkLW~DY~~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v 225 (656)
T KOG1914|consen 168 M-----------------HNLEKLWKDYEAFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAV 225 (656)
T ss_pred c-----------------ccHHHHHHHHHHHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 1 111111111111110 00111111111 0112234444444444432 222111111
Q ss_pred --------------HHHHHHHHHhcC------CH--HHHHHHHHHHH-hCCCCCChhhHH-H----HHHHHHhcCC----
Q 006154 362 --------------YNSTIHWLFAEG------DV--EGALFVLSDMI-DKHICPDHFTYS-I----LTKGLCRNGC---- 409 (658)
Q Consensus 362 --------------~~~ll~~~~~~g------~~--~~a~~~~~~~~-~~~~~~~~~~~~-~----l~~~~~~~g~---- 409 (658)
|..+|..=...+ .. ....-.+++.+ -.+..|+..-.. . .-+.+...|+
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 222222211111 00 00111111111 112222221110 0 0112222333
Q ss_pred ---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006154 410 ---VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN---NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 410 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 483 (658)
.+++.++++...+.-...+..+|..+...--..- ..+.....++++...-..--..+|..++..-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3556666665554433334444444433222222 2555666666666543222345677778877788888999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 484 VQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 484 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+|.++.+.+..+ +..++++++..+| .++..-|.++|+--.+....++..-...++.+...++-..|..+|++....
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999998887776 6677788887766 467788999999888887778888888888888899999999999999887
Q ss_pred CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 563 GIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 563 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
++.|+ ...|..++.--..-|+...++++-+++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66665 467889998888899999999888887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.1e-08 Score=93.34 Aligned_cols=250 Identities=12% Similarity=0.069 Sum_probs=153.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+++.++..+. +......|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 3444455555455444444322 4444444444444444444555555555444333 4444444444555555555555
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 450 QLLSSMIVRGLI--------PDIITYGTLIDGYCKGGNIEGAVQVYENM-KKVEKKPNLVIYNSIINGLCKDASLDAAKS 520 (658)
Q Consensus 450 ~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 520 (658)
..++.-+...++ ++...-.. ..+..........++|-++ ...+..+|+.+...|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555444332110 00000000 0111112223334444444 444445788888888888899999999999
Q ss_pred HHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 006154 521 LLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILH-- 597 (658)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 597 (658)
.|+.+....|.|...||.|+..++...+.++|+..|+++++ +.|+ +...-.|.-+|...|.+++|.+.|-.++..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998 4676 345556778899999999999998876632
Q ss_pred -------CCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006154 598 -------GIIPDYVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 598 -------g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
+..++..+|.+|-.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1223445777777777777777654443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-06 Score=74.77 Aligned_cols=312 Identities=11% Similarity=0.027 Sum_probs=179.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 006154 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHN---CIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTY 327 (658)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 327 (658)
+.-..-+...+...|++..|+.-|... .+ .|+..|. .-...|...|+-..|..=+.+..+. +||-..-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaA---ve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAA---VE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH---Hc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 334445555666666666666666652 22 1222232 2234555566666666666665544 4443222
Q ss_pred H-HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 328 A-TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 328 ~-~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
. .-...+.+.|.+++|..=|+.+.... |+..+ ...++.+.--.++- ......+..+..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhc
Confidence 1 11234455666666666666655542 21110 01111111111111 112233444556
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|+...|++....+++..+- |...|..-..+|...|++..|+.=++...+..- .+..++--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHH
Confidence 78888888888888887543 777788888888889998888877766655422 2455555566777788888888888
Q ss_pred HHHHHhCCCCCCHHHH----HHH---H------HHHHhcCCHHHHHHHHHHHHHcCCC-CHhh---HHHHHHHHHHcCCH
Q 006154 487 YENMKKVEKKPNLVIY----NSI---I------NGLCKDASLDAAKSLLQASQRIGLL-DAIT---YNTLINGYFINGKI 549 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~----~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~ 549 (658)
.++..+. .||.... ..+ . ......+++.++.+-.+...+..|. .... +..+-.++...|++
T Consensus 246 iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 8888773 5554422 111 1 1123455666666666666666665 3333 33344555666777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+|++...+.++.. +.|..++.--..+|.-...+++|+.-|+.+.+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777777777642 223666766777777777777777777777764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-05 Score=90.84 Aligned_cols=370 Identities=12% Similarity=-0.036 Sum_probs=229.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
...+...|++.+|...... .... ..-..............|+++.+...+..+.......+..........+...
T Consensus 348 a~~~~~~g~~~~Al~~a~~---a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALA---AGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHCCCHHHHHHHHHH---CCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3445556777766665554 1111 0001111222334556678887777776652211112222334445556778
Q ss_pred CChHHHHHHHHHHHHCCC------CCcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 006154 338 GSSEEALRLCDEMVKRGL------MPNN--VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDH----FTYSILTKGLC 405 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~------~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 405 (658)
|+++++...+......-- .+.. .....+...+...|++++|...+++..+.....+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999988754311 1111 12222334566789999999999988764222222 23455666677
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHH
Q 006154 406 RNGCVKQAFKLHNQVLEEHMV-----GDAYSYNILINYLCKSNNLAAAKQLLSSMIVR----GLI--P-DIITYGTLIDG 473 (658)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~ 473 (658)
..|++++|...+++....... ....++..+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999888753111 11234556677788999999999998876652 221 1 22334455566
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhH-----HHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVE--KKP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITY-----NTLING 542 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~-----~~l~~~ 542 (658)
+...|++++|...+.+..... ..+ ....+..+.......|++++|...++.+...... ....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999999998876531 112 2334444566777899999999999887653221 11111 112244
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCYQQARELMKVMILH----GIIPD-YVTYTTLVTRFS 614 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~ 614 (658)
+...|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55689999999998776542211111 11356777888999999999999988753 33222 235566677789
Q ss_pred hCCChHHHHHHHHHHHHC
Q 006154 615 KNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~ 632 (658)
+.|+.++|...+.+..+.
T Consensus 743 ~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999886
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=89.97 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI-AEAFAMFS 557 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 557 (658)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++.....+.++.+...++.+....|+. +.+.+.+.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 345555555554432 3344444444444455555555555555554444444444444444444444444 33444444
Q ss_pred HHHH
Q 006154 558 EMRN 561 (658)
Q Consensus 558 ~~~~ 561 (658)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-08 Score=91.71 Aligned_cols=252 Identities=12% Similarity=0.048 Sum_probs=148.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006154 331 IDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV 410 (658)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (658)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++... ..|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 344556788888876555 222222223344556677788888776544 333332 355555555554444333444
Q ss_pred HHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 489 (658)
+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555444444333322 22233333345566678888888777542 3566666777888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 490 MKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 490 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
|.+. . +..+...+..++.. ...+.+|..+|+++......++.+.+.++.++...|++++|.+++++..+.+ +
T Consensus 157 ~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 157 MQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8764 2 33444445544433 2357888888888777655577778888888888888888888888876654 3
Q ss_pred CChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 006154 566 VNKVGYNILINFLCKFGCY-QQARELMKVMILH 597 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 597 (658)
-+..+...++-+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3456666677777777776 5566777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00023 Score=73.79 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=153.5
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH
Q 006154 106 NWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN 185 (658)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 185 (658)
..++|..|...+.++.+ ..|..+.+-..-.-...+.|+.++|..+++.....+.. |..+..
T Consensus 21 d~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq 81 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQ 81 (932)
T ss_pred hhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHH
Confidence 45778888888887776 34444444444444567889999999999988877655 888999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 186 NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 186 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 265 (658)
.+-..|.+.|+.++|..+|++.... .|+......+..+|.|.+++.+-.+.--++-+. ++-+...+=++++.+.+.-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 9999999999999999999999875 477888888888999998887655555455443 2334555556666655432
Q ss_pred C----------HHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCChhhHHHHHHHH
Q 006154 266 D----------LEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR-YAMIKAGIDCNVRTYATLIDGY 334 (658)
Q Consensus 266 ~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~ 334 (658)
. ..-|.+.++.+ ....|-.-+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~--l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKL--LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred cCCcccccchhHHHHHHHHHHH--hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1 23455566663 223332112222222334455778899999988 3444433334445555677888
Q ss_pred HhcCChHHHHHHHHHHHHCCC
Q 006154 335 ARGGSSEEALRLCDEMVKRGL 355 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~ 355 (658)
...+++.+..++-.++...|.
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCC
Confidence 889999999999999988864
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00014 Score=70.99 Aligned_cols=427 Identities=13% Similarity=0.156 Sum_probs=252.5
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+.+.++|..+++-+... ..++++..+++++. ..|.++.+|..-+..-.+..+++..+.+|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~------------------~FP~s~r~W~~yi~~El~skdfe~VEkLF~ 77 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN------------------VFPSSPRAWKLYIERELASKDFESVEKLFS 77 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc------------------cCCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66888999999887765 89999999999887 678889999999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhc-CCHh----HHHHHHHHHH-hCCCCcC-HHHHHHHHHH---------HHhcCCHHH
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKL-NEIG----RFWKLYKEMV-SCGYVEN-VNTFNLVIYA---------LCKECKLEE 234 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~-g~~~----~a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~ 234 (658)
+.+.. ..+...|...+..-.+. |+.. ...+.|+-.+ +.|+.+- ...|+..+.. +..+.+.+.
T Consensus 78 RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~ 155 (656)
T KOG1914|consen 78 RCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA 155 (656)
T ss_pred HHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence 99886 34688888888755443 2322 2334444433 4453332 2345555433 233345677
Q ss_pred HHHHHHHHHhCCCCCChh-hHH------HHHHHHH-------hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVV-CFN------MIINEAC-------QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~-~~~------~li~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
..++|++++..-+. +.. .|+ .-|+... +...+..|.++++++..+. .|...+..+ .-
T Consensus 156 vRriYqral~tPm~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt-~GL~r~~~~-------vp 226 (656)
T KOG1914|consen 156 VRRIYQRALVTPMH-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLT-RGLNRNAPA-------VP 226 (656)
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hhhcccCCC-------CC
Confidence 78888888764222 111 111 1111111 1223445555555532111 111111000 00
Q ss_pred hcCChHH--HHHHHHHHHHc----CCC-CChhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHH-----HHHHH
Q 006154 301 KLGRVEF--AEEIRYAMIKA----GID-CNVRT-YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVY-----NSTIH 367 (658)
Q Consensus 301 ~~g~~~~--A~~~~~~~~~~----~~~-~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~ll~ 367 (658)
..|--++ ..+++....+. ++. .+... -+.+.-+| +++ +.-.+..|+..-. ...-+
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay------eQ~------ll~l~~~peiWy~~s~yl~~~s~ 294 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY------EQC------LLYLGYHPEIWYDYSMYLIEISD 294 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH------HHH------HHHHhcCHHHHHHHHHHHHHhhH
Confidence 0011111 11222222111 110 00000 00000000 000 1111222222110 00111
Q ss_pred HHHhcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 368 WLFAEGD-------VEGALFVLSDMIDKHICPDHFTYSILTKGLCRN---GCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 368 ~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
.+...|+ -+++..+++..++.-..-+..+|..+...--.. ...+.....+++++.....--.-+|..+++
T Consensus 295 l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn 374 (656)
T KOG1914|consen 295 LLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMN 374 (656)
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHH
Confidence 2233333 345556666655433333444444443321111 135666677777766543334457888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.-.+..-++.|..+|.+..+.+..+ ++...++++.-+| .++.+-|.++|+--.+. ...++.-....++-+...++-.
T Consensus 375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcch
Confidence 8889999999999999999887766 7788888888776 58889999999987765 4446666677888888999999
Q ss_pred HHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+..+|++....... ....|..++.--..-|+...+.++-+++..
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999988433 678999999999999999999998888755
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-07 Score=90.73 Aligned_cols=222 Identities=15% Similarity=0.057 Sum_probs=170.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
+|-...-..+...+.+.|-...|..++++.. .|..++.+|+..|+..+|..+..+..+ -+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444566677788888888888887764 356678888888888888888888777 35788888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
.+......-+++|.++.+..... .-..+.......+++.++.+.++...+.++....+|-.+..+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 88777777788888887765432 11122222334688888889998888888888888888888888889999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.|.+.|....... +.+...||.+..+|.+.|+-.+|...++++.+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9888888887742 3346788899889999999899999888888776 4567778788888888889998888888876
Q ss_pred HC
Q 006154 631 LS 632 (658)
Q Consensus 631 ~~ 632 (658)
..
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 64
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-06 Score=86.16 Aligned_cols=258 Identities=16% Similarity=0.057 Sum_probs=155.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+.+..+.... +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445555666666666555554 445555555555555555555555555555554222 344445555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HH
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSM-IV 457 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 457 (658)
+..++..+...++ |..+..+ ...++++.- +-.++.. .+....++|-++ ..
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHHh
Confidence 5555555543221 1111000 000000000 0011111 122333444333 33
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYN 537 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 537 (658)
.+..+|......|.-.|.-.|++++|+..|+.++...+. |..+|+.|...+....+..+|...++++.+..|.-+.+..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 444467777888888888899999999999999886433 6778999999999999999999999999999988888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVG---------IAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.|+-.|...|.+++|...|-..+... ..++...|..|=.++.-.++.|.+.
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 88889999999999998887765421 1122345555555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00036 Score=72.47 Aligned_cols=518 Identities=14% Similarity=0.079 Sum_probs=277.5
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDA 151 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (658)
.+..+|+.-...+.++++-.+.+.++- +-.+.|.|+.++|..+++..-. ..+.+..+...
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLk--aLsl~r~gk~~ea~~~Le~~~~------------------~~~~D~~tLq~ 82 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLK--ALSLFRLGKGDEALKLLEALYG------------------LKGTDDLTLQF 82 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHH--HHHHHHhcCchhHHHHHhhhcc------------------CCCCchHHHHH
Confidence 356788888888887654333333333 3456788999999988876543 34457889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKEC- 230 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g- 230 (658)
+-.+|...|+.++|..+|++.... .|+......+..+|.|.+.+.+-.++--++-+. ++-+.+.+=++++...+.-
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999886 456777888888999988887655555555543 3445555555555554321
Q ss_pred C---------HHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 231 K---------LEEALSLYYRMLKSG-IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 231 ~---------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
. ..-|.+.++.+.+.+ ..-+..-...-...+-..|++++|++++..- ..+.-...+...-+.-++.+.
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~--la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAIT--LAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHH--HHHhccccchHHHHHHHHHHH
Confidence 1 234666677776654 2212223333344556789999999999431 222222334444556778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----------------hcCChHHHHHHHHHHHHCCCCCcHhHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA----------------RGGSSEEALRLCDEMVKRGLMPNNVVYNS 364 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 364 (658)
..+++.+..++-.++...| ..| |...++.+. ..+..+...+...+..... ....|-+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA 310 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLA 310 (932)
T ss_pred HhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHH
Confidence 8999999999999998886 333 333332211 1222333333333322221 1122333
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--Chh---hHHHHH
Q 006154 365 TIHWL---FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--DAY---SYNILI 436 (658)
Q Consensus 365 ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~ 436 (658)
-+... ..-|+.+++.-.|-+-. |..| .|..=+..|...=..+.-..++.......... |.. .+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 33333 34477777654443222 1111 11111111111112222222222222111000 000 011111
Q ss_pred HHHHhcC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCChH---HHHHHHHHH
Q 006154 437 NYLCKSN-----NLAAAKQLLSSMI---VRG------LIPDII---------TYGTLIDGYCKGGNIE---GAVQVYENM 490 (658)
Q Consensus 437 ~~~~~~~-----~~~~A~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~~ 490 (658)
..-.-.| .-+.-..++.+.. ++| .-|+.. +-+.|++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111 1122222222211 111 222222 3456777888887765 344455554
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h
Q 006154 491 KKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-K 568 (658)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 568 (658)
... -+-|..+-..++..|+-.|-+..|.+++..+.-+.+. |...| .+..-+...|++..+...++...+. ...+ .
T Consensus 466 lt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 443 2335556667888888889999999999888777666 33333 3344555667888777777766552 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQARELM---KVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.+-.. |....+.|.+.+..++. +++...--.--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~ey-I~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEY-IALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHH-HHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 12222 22333456665554443 222211001112233456666777788887777777776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.8e-06 Score=77.72 Aligned_cols=218 Identities=7% Similarity=-0.022 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHH
Q 006154 408 GCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNI--EGAV 484 (658)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~ 484 (658)
+..++|+.+..++++..+. +..+|+.-...+...| ++++++..++++.+...+ +...|+.....+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 3344444444444443322 2333333333333333 344455555444443222 222333332223333331 3444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc---CCH----HHHHHHHH
Q 006154 485 QVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---GKI----AEAFAMFS 557 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 557 (658)
.+++++.+...+ +..+|......+...|+++++.+.++++.+.++.+..+|+.....+.+. |.. ++++....
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 555555544322 4444544444445555555555555555555555555555544444332 111 23444444
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKF----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC---------------- 617 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------- 617 (658)
+++... +-|...|+.+...+... ++..+|.+.+.+....+ ..+......|+..|+...
T Consensus 208 ~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 208 DAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 444432 23444455555555442 22344555555544432 123444455555554321
Q ss_pred --ChHHHHHHHHHHH
Q 006154 618 --SPEEVIELHDDMV 630 (658)
Q Consensus 618 --~~~~A~~~~~~m~ 630 (658)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 3467888888773
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-05 Score=77.60 Aligned_cols=182 Identities=8% Similarity=0.006 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL--AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVY 487 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 487 (658)
+++++..++++.+.+++ +..+|+.....+.+.|+. +++..+++++++... -+...|+.....+...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444444333 333333333333333331 344444545444322 14444444444444555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc----CCHHHHHHHH
Q 006154 488 ENMKKVEKKPNLVIYNSIINGLCKD---AS----LDAAKSLLQASQRIGLLDAITYNTLINGYFIN----GKIAEAFAMF 556 (658)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 556 (658)
+++++.++. +...|+.....+.+. |. .++......++....|.+..+|+.+...+... ++..+|...+
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 555554333 333333333333222 11 23455555666666666666666666666552 2334566666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 006154 557 SEMRNVGIAVNKVGYNILINFLCKFG------------------CYQQARELMKVMI 595 (658)
Q Consensus 557 ~~~~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 595 (658)
.+....+ +.+......|++.|+... ..++|.+++..+.
T Consensus 245 ~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6655532 234555666666666432 2356777777663
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-06 Score=82.15 Aligned_cols=304 Identities=15% Similarity=0.116 Sum_probs=218.3
Q ss_pred HHHHHHHhcccCCCCCCHHhHHHHHHHHHcC---CCchHHHHHHHHHHhcCCCChHHHHHHHHhhc-cCCCCCHHHHHHH
Q 006154 77 ALEFYTWVGENNRFSHSLESSCAIVHLLVNW---RRFDDALLLMGNLMSANSVSPLEFLEGLLDSY-EICKATPAVFDAL 152 (658)
Q Consensus 77 al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l 152 (658)
-.-+|.-+..+.+..-...+...+.+.+... +..+++....+.+.+.-......+...+.-.+ +..||-...-..+
T Consensus 325 l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~l 404 (777)
T KOG1128|consen 325 LEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLL 404 (777)
T ss_pred HHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHH
Confidence 3445555555554444455556666666654 45555655555554432222223333333222 2456666677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
...+...|-...|..+|+++ ..|..++..|...|+..+|..+..+.++. +|+...|..+.+......-+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 89999999999999999965 45778888999999999999999998884 78999999999988777778
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 312 (658)
++|.++.+..... +-..+.....+.++++++.+.|+.. +.-. +....+|-.+..+..+.++++.|.+.|
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~s--l~~n--plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERS--LEIN--PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHH--hhcC--ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 9999998875432 2223333334579999999999984 2222 224668888888899999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 006154 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH-IC 391 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~ 391 (658)
....... +.+...||.+-.+|.+.|+-.+|...+.+..+-+ .-+...|-..+....+.|.+++|.+.+.++.... ..
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9998664 5567889999999999999999999999999886 3356677777788899999999999999887542 11
Q ss_pred CChhhHHHHHHHH
Q 006154 392 PDHFTYSILTKGL 404 (658)
Q Consensus 392 ~~~~~~~~l~~~~ 404 (658)
.|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 2444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=86.12 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=160.6
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcc---CHHhHHHHHHHHHhcCCHhHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK-GHSV---SIHAWNNFLSHLVKLNEIGRFWKLY 204 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 204 (658)
.+=|+.++. ..|.+...|...+......++.+.|++++++++.. ++.- -...|-++++.-...|.-+...++|
T Consensus 1444 aeDferlvr---ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1444 AEDFERLVR---SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred HHHHHHHHh---cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344555554 45667788888888888888888888888888763 1111 2346777777777777777888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC
Q 006154 205 KEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
+++.+.. .....|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-++|..++.+. +....
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA--L~~lP 1595 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA--LKSLP 1595 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH--Hhhcc
Confidence 8888752 22446777888888888888888888888765 3335567778888888888888888888874 22110
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH--hHH
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN--VVY 362 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~ 362 (658)
-.-........+..-.+.|+.+.+..+|+...... |.....|+..++.-.+.|+.+.++.+|+++...++.|-. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 01123344455556667788888888888877653 556777888888888888888888888888877665432 234
Q ss_pred HHHHHHHHhcCCH
Q 006154 363 NSTIHWLFAEGDV 375 (658)
Q Consensus 363 ~~ll~~~~~~g~~ 375 (658)
...+..=-+.|+-
T Consensus 1675 KkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhcCch
Confidence 4444433333443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=85.74 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEE-HMVG---DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG 468 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (658)
....|-..+......++.++|.++.++++.. ++.- -...|.++++.....|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445566666667777777777777777654 1111 1235667777777777777777788777764 11234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHc
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFIN 546 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 546 (658)
.|...|.+.++.++|.++++.|.+. +.-....|...++.+.++.+-++|..+++++.+.-|. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777788888888888888888775 3346677778888888888888888888887777666 556666667777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCCChH
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV--TYTTLVTRFSKNCSPE 620 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~ 620 (658)
|+.+++..+|+...... +-....|+..++.-.++|+.+.+..+|++.+..++.|... .|..++..=-..|+-+
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88888888888777652 4456678888888888888888888888888777666533 4455554444445543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-06 Score=73.09 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCC--HHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL-CKFGC--YQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~ 588 (658)
.++.+++...++...+..+.+...|..++..|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555555555555555555566666666666666666666666555542 22444455555542 44444 35566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+++++..+.+ +-+...+..+...+.+.|++++|+..++++++.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666655542 114445555555555566666666666665553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-05 Score=84.46 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=166.0
Q ss_pred ChhhHHHHHHHHHhcCChHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQA-FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
++.....+=.+....|..++| .+++.+..+ ++..........+++.-+..... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 444444444555666766665 334444433 22222222333333332223332 2445688888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
....+.|.+++|..+++...+..+. +......+...+.+.+++++|....++.....+.+......+..++.+.|++++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999999985322 455677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..|....|+.++. +...-..+++++.-
T Consensus 173 A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 244 (694)
T PRK15179 173 ADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCc
Confidence 999999999843 345788899999999999999999999999875 3455566665543 34444556666544
Q ss_pred C----CCCCCHHHHHHHHHHhhcCCC
Q 006154 632 S----GVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 632 ~----g~~p~~~~~~~l~~~~~~~g~ 653 (658)
. |.+....+....|.-+.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 245 EGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred ccccCCCceeeeeHHHHHHHHhhcCc
Confidence 4 333444556666666655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.1e-06 Score=76.12 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=121.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI-PD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL--VIYN 503 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 503 (658)
....+..+...+...|++++|...++++...... |. ...+..+..++.+.|++++|+..++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556677777788888888888888887765321 11 235566677788888888888888888775332111 1344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 504 SIINGLCKD--------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 504 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
.+..++... |+.+.|.+.++.+....+.+...+..+...... ... .. .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~------~~--------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR------LA--------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 444455443 667778888888877776654444333221110 000 00 0112556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 576 NFLCKFGCYQQARELMKVMILHGI-IP-DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
..+.+.|++++|+..+++.++... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778899999999999999887521 12 3467788888999999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-08 Score=57.76 Aligned_cols=32 Identities=44% Similarity=0.703 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 598 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
|+.||..||+++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444455555555555555555555444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-08 Score=57.77 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-05 Score=81.73 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=119.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006154 427 GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSI 505 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 505 (658)
.+...+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 36778888888888889999999998888875 344 455666778888888999999888888886443 66677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
..++.+.|++++|..+|+++...++.+..++..+..++...|+.++|...|++..+.. .|-...|+.++ +++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 8888888999999999998888777788888888888888899999999888887752 34445444432 2334
Q ss_pred HHHHHHHHHH
Q 006154 586 QARELMKVMI 595 (658)
Q Consensus 586 ~A~~~~~~~~ 595 (658)
.-..+++++.
T Consensus 234 ~~~~~~~~~~ 243 (694)
T PRK15179 234 ADLAALRRLG 243 (694)
T ss_pred HHHHHHHHcC
Confidence 4444555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=71.97 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=87.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH-HHcCC--HHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY-FINGK--IAEAF 553 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 553 (658)
.++.++++..++...+..+ .+...|..+...|...|++++|...++++.+..+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5566667767766666533 36677777777777777888888777777777777777777777753 55565 47777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
+++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+. .+|+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 7777777754 335666777777777778888888888877765 34443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-05 Score=69.94 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|+..+.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 34445555556666655555554332 1224444555666666777777777777776664 345667777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
|+++.|..-+.+..+..+.++..++.+...|.-.|+.+.|..++......+ .-|...-..+.-+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777777766677777777777777777777777776666643 2245555566666667777777766654
Q ss_pred HH
Q 006154 593 VM 594 (658)
Q Consensus 593 ~~ 594 (658)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=73.48 Aligned_cols=188 Identities=12% Similarity=-0.042 Sum_probs=131.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI--ITY 467 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~ 467 (658)
.....+..+...+...|++++|...++++....+.. ...++..+...+.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 355677778888999999999999999998875431 1246778889999999999999999999886432121 234
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 468 GTLIDGYCKG--------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 468 ~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
..+..++... |++++|.+.++.+.+..+. +...+..+..... .... .......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~-------------~~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH-------------HHHHHHHH
Confidence 4455555544 7889999999999875332 2222222211110 0000 01112356
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGI--AVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...|.+.|++++|...+++..+... +.....+..++.++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778899999999999999987521 123467889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-05 Score=66.84 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+.+|.-+|+++.++.++++.+.+..+.++...|++++|..++++.+..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444444555554444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-05 Score=68.11 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=134.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
..+-..+...|+-+....+....... ..-|.......+......|++..|...+.++....++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44556677788888888887776543 33366677778899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
+.++|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999853 3346678899999999999999999999999864 3367777788888999999999998876
Q ss_pred HHHH
Q 006154 628 DMVL 631 (658)
Q Consensus 628 ~m~~ 631 (658)
.-+.
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00011 Score=65.19 Aligned_cols=252 Identities=17% Similarity=0.144 Sum_probs=145.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
++-+.-.|++..++..-....... -++..-..+-++|...|++..... ++... -.|.......+...+...++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchh
Confidence 444555677776666555544331 344444556667777776644332 22222 133333444333333334444
Q ss_pred HHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHH
Q 006154 233 EEAL-SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEI 311 (658)
Q Consensus 233 ~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 311 (658)
++-+ ++.+.+......-+......-...|+..|++++|++.++.. . +......=...+.+..+++-|++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---E------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---c------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44455554433333333334445677888888888887761 1 233344444566777888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 312 RYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
+++|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....
T Consensus 160 lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 160 LKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888653 45566666666654 45677788888887653 456777777777777778888888888888777
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHcC
Q 006154 388 KHICPDHFTYSILTKGLCRNGCVKQ-AFKLHNQVLEEH 424 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 424 (658)
+... ++.+...++-+-...|...+ ..+.+.++....
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 6544 45555555544444444433 344555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=67.20 Aligned_cols=95 Identities=11% Similarity=-0.069 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+......+...|++++|...|+.+....|.+...|..++.++...|++++|...|++..... +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33445555566666666666666666666666666666666666666666666666666543 33455566666666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 006154 582 GCYQQARELMKVMILH 597 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~ 597 (658)
|++++|+..+++.+..
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=66.90 Aligned_cols=108 Identities=9% Similarity=-0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
.++++.++. ++..+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...|+.+....
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 222344566677788888888888888887643 367788888888888888888888888888888
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+.++..+..++.++...|++++|...|+...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888889999999888888874
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00011 Score=78.71 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
.+..+..+|-+.|+.+++...++++++..+. |+.+.|.+...|... ++++|.+++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444444455555555555555555554422 444455555555444 555555444444332 22
Q ss_pred hcCChHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH
Q 006154 476 KGGNIEGAVQVYENMKKVE-------------------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY 536 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 536 (658)
..+++..+.++|.++.... ..--..++-.+...|...++++++..+++.+.+..+.|..+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 2334444444444443321 111223333444455555666666666666666666555555
Q ss_pred HHHHHHHH
Q 006154 537 NTLINGYF 544 (658)
Q Consensus 537 ~~l~~~~~ 544 (658)
..++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00024 Score=76.28 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred CCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
...+++..++.++...+++++|..+++..++ ..|.....|..++..+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--h
Confidence 3467788899999999999999999997776 4566666777777777777776665555 2
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNV 251 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 251 (658)
++.......++..+..++..|... .-+...+..+..+|-+.|+.++|..+++++++.... |.
T Consensus 89 ---------------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~ 150 (906)
T PRK14720 89 ---------------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NP 150 (906)
T ss_pred ---------------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cH
Confidence 223333334444444444455543 234456777777788888888888888888877633 67
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
.+.|.+...|... ++++|++++.+. . ..+...+++..+.+++.++...
T Consensus 151 ~aLNn~AY~~ae~-dL~KA~~m~~KA---V---------------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 151 EIVKKLATSYEEE-DKEKAITYLKKA---I---------------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHH---H---------------HHHHhhhcchHHHHHHHHHHhc
Confidence 7788888888777 888888877772 1 2245556666777777766655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=67.45 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
....+...+...|++++|...++.+...++.+...+..+...+...|++++|...+++..+.+ +.+...+..+..++..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMIL 596 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~ 596 (658)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00017 Score=69.94 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 517 (658)
+...|++++|+..++.++.. .+-|........+.+.+.++.++|.+.++++... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666665554 2224444455556666667777777777766664 233 4455556666667777777
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|..+++......+.++..|..|..+|...|+..++..-. ...|...|+++.|+..+....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 777777766666667777777777777776666554432 23344566666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0002 Score=69.39 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
.-|..-+. +...|++++|+..++.+... .+-|+.......+.+.+.++.++|.+.++++....|......-.+..+|.
T Consensus 308 a~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 33444443 44679999999999999886 34477777888889999999999999999999999988889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIE 624 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 624 (658)
+.|++.+|+.+++...... +.|+..|..|.++|...|+..+|..... ..+.-.|++++|+.
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHH
Confidence 9999999999999998864 6789999999999999999988865433 34566799999999
Q ss_pred HHHHHHHC--CCCCCHHHHHHHHHHhh
Q 006154 625 LHDDMVLS--GVSPDNQTYNAIISPLL 649 (658)
Q Consensus 625 ~~~~m~~~--g~~p~~~~~~~l~~~~~ 649 (658)
++....+. .-.|+..-+...|....
T Consensus 447 ~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 447 FLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99998886 23445555555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00048 Score=60.83 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
|..++-+....|+.+.|...++.+..+- +-+...-..-...+-..|++++|+++|+.+.+.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444555556666666666666666552 2122222211222344567777777777776654 3355566555555556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 588 (658)
.|+.-+|.+-+....+..+.|..+|.-+...|...|++++|.-.++++.-.. |-++..+..+.+.+.-.| +..-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666677777777766666677777777777777777777777777766532 223334444555443333 455666
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
+++.+.++.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 666666653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=65.73 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=74.6
Q ss_pred HHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 521 LLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
.++.+....+.+......++..+...|++++|...++.+...+ +.+...+..+..++.+.|++++|...+++....+ +
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3455555555555666666666777777777777777766643 3355666666777777777777777777766542 3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
.+...+..+...+...|++++|...+++..+ ..|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 3455566666667777777777777777766 345554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00071 Score=59.79 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHH---CC-CCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 339 SSEEALRLCDEMVK---RG-LMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQA 413 (658)
Q Consensus 339 ~~~~A~~~~~~~~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (658)
+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555432 12 2333332 2333344445556666666666655542 11222222222223345555666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
+++++.+++.++. |..++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 6666666555432 4444444444444445544555555544443 334555555555555555555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=62.02 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 585 (658)
..++...+...++.+....+.+ ....-.+...+...|++++|...|+.+......|+ ......|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3666777777777777766654 33444456677777888888888877777542222 123345667777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 586 QARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 586 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
+|+..++..... ......+......+.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888877664332 223445556667777888888888777654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00023 Score=69.83 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|+..+...++++.|..+++++.+.. |+ ....++..+...++..+|++++++..+.. +-+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667888999999999988874 44 34456777777888889999998888753 3366677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
.++++.|..+.+++.+..|.+..+|..|+.+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999899999999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00023 Score=60.23 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
.+...+...|++++|...|+.+......++ ......+...+...|++++|...++..... ......+......+.+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHH
Confidence 344555555555555555555555432221 122333444445555555555555442221 1222334444445555
Q ss_pred cCCHHHHHHHHHH
Q 006154 229 ECKLEEALSLYYR 241 (658)
Q Consensus 229 ~g~~~~A~~~~~~ 241 (658)
.|+.++|+..|+.
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=70.56 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
....|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++++.....+.+...+..-+..+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34456667777899999999999999864 44 444577888888899999999999999888899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.++++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999995 455 5699999999999999999999887655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=48.28 Aligned_cols=31 Identities=52% Similarity=0.755 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
|++++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-05 Score=47.99 Aligned_cols=35 Identities=40% Similarity=0.645 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0059 Score=51.36 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHH
Q 006154 461 IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNT 538 (658)
Q Consensus 461 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 538 (658)
.|+...--.|..++...|+..+|...|++...--+--|......+.++....+++.+|...++++.+..+. .+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777888888888888888888776555667777778888888888888888888888887765 6777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+...|...|++..|+.-|+..... -|+...-......+.+.|+.++|..-+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 788888888888888888888873 4555554455566677777776655544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0093 Score=56.83 Aligned_cols=285 Identities=18% Similarity=0.066 Sum_probs=133.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hhhHHHHHHHHHhc
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SVTHNCIINGFCKL 302 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 302 (658)
..+.+..++.+|+..+...++.++. +...|..-...+...|++++|..-.+... . +.|. ...+.-.-+++...
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r--~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV---R--LKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe---e--cCCCccccccchhhhhhhh
Confidence 3556667777788888877776443 45566666666667777777766665421 1 1111 22333333444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCcHhHHHHH-HHHHHhcCCHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL-MPNNVVYNST-IHWLFAEGDVEGALF 380 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l-l~~~~~~g~~~~a~~ 380 (658)
++..+|.+.++. ...| ....++..++....... .|...+|..+ ..++.-.|+.++|..
T Consensus 131 ~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 444455444441 1111 11122222222221111 1333334333 234455677777776
Q ss_pred HHHHHHhCCCCCChhhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 381 VLSDMIDKHICPDHFTYSILTK--GLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
.-...++... ...+..+++ ++...++.+.+...|++.+..++. -.. .+..-.-.+.+..+...
T Consensus 191 ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~----------sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 191 EAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQK----------SKSASMMPKKLEVKKER 255 (486)
T ss_pred HHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChh--hhh----------HHhHhhhHHHHHHHHhh
Confidence 6655555321 122233333 233456677777777777665432 111 01111111111222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhh
Q 006154 459 GLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE---KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAIT 535 (658)
Q Consensus 459 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 535 (658)
..-..+.|++..|.+.|.+.+... ..|+...|.....+..+.|+.++|..--+...+..+.-...
T Consensus 256 ------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 256 ------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred ------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 112334555555555555555431 22333344444444555566666655555555554433444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
|..-..++...+++++|.+-+++..+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555566666666655544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=46.78 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00075 Score=55.93 Aligned_cols=96 Identities=9% Similarity=-0.071 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
..-.+..-+...|++++|.++|+.+....+.+...|-.|..++-..|++++|+..|....... +.|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344455566778888888888888888888888888888888888888888888888888765 3567777888888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888887754
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.8e-05 Score=46.05 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00087 Score=54.52 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIA--VNKVGYNILINFLCKFGCYQQARELMKVMILHGII--PDYVTYTTLVTRF 613 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~ 613 (658)
.++..+.+.|++++|...|+++...... .....+..++.++.+.|++++|.+.++.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444432100 00122333444444444444444444444432110 0122333344444
Q ss_pred HhCCChHHHHHHHHHHHH
Q 006154 614 SKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~ 631 (658)
.+.|++++|...++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0015 Score=67.31 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=34.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++.+|..+.-.+...|++++|...++++... .|+...|..++..+...|+.++|.+.++++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555544444555555555555555553 24555555555555555555555555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00052 Score=53.00 Aligned_cols=91 Identities=22% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC 617 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 617 (658)
.++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444444555555555555554431 1222344444445555555555555555544432 122234444444555555
Q ss_pred ChHHHHHHHHHHH
Q 006154 618 SPEEVIELHDDMV 630 (658)
Q Consensus 618 ~~~~A~~~~~~m~ 630 (658)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00058 Score=67.33 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 211 GYVENVNTFNLVIYALCKECKLEEALSLYYRMLKS--GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 211 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.++.. -...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n---~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN---RLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC---hhhcccCCC
Confidence 34556667777777777777778888887777654 2222334556888888888888888888888 778888888
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
..+++.+++.+.+.|++..|.++...|...+...+..|+..-+.++.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888887776566666666656555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00079 Score=54.78 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHS--VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
.++..+..++.+.|++++|.+.|+.+....+. ....++..+..++.+.|++++|...++++.+.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444455555555555555555554443211 11233444444444444555555555444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00058 Score=67.32 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYN 572 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 572 (658)
+.+......+++.+....+++.+..++-+....... .+.+..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555556666666666666666666665554221 34444566777777777777777777666677777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 573 ILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 573 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
.|++.+.+.|++..|.++.-.|...+.-.+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777776666655555555555544444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00081 Score=66.36 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|...++++.+..+.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555555555555555555555555555555555555555555555555532 223444555555555555555555
Q ss_pred HHHHHHHH
Q 006154 589 ELMKVMIL 596 (658)
Q Consensus 589 ~~~~~~~~ 596 (658)
..|++++.
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00061 Score=52.60 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|.+.+++..... +.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355677788889999999999999999888887889999999999999999999999998864 3455678889999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999988753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.05 Score=52.78 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=80.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006154 98 CAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH 177 (658)
Q Consensus 98 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 177 (658)
+.-+-+|.+.+++.+|.++|.++.+..-.++...-++ ..-+.++++|... +.+.-...+....+.-
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeE------------vl~grilnAffl~-nld~Me~~l~~l~~~~- 75 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEE------------VLGGRILNAFFLN-NLDLMEKQLMELRQQF- 75 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHH------------HHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-
Confidence 3345567778888888888887766422221111111 1123345555433 3444444444444321
Q ss_pred ccCHHhHHHHHH--HHHhcCCHhHHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 178 SVSIHAWNNFLS--HLVKLNEIGRFWKLYKEMVSC--GYVE------------NVNTFNLVIYALCKECKLEEALSLYYR 241 (658)
Q Consensus 178 ~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~--g~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 241 (658)
| ...|-.+.. ...+.+.+..|.+.+..-... +..+ |...-+..+..+...|++.+++.++++
T Consensus 76 -~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 76 -G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred -C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 1 122333333 234666777777666555443 2211 222334556677788888888888887
Q ss_pred HHhC----CCCCChhhHHHHHHHHHh
Q 006154 242 MLKS----GIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 242 m~~~----~~~p~~~~~~~li~~~~~ 263 (658)
|... ...-+..+|+.++-.+++
T Consensus 154 i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 154 IIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 7643 334677788876665554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00054 Score=65.09 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777777888888888887542 2244445444444 22355666688888888877777788888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...|+.+.|..+|++.... +.++. ..|...++.-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888764 33222 36777777777778888888877777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0025 Score=55.83 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF 577 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 577 (658)
.+..+...+...|++++|...++++....+. ....+..++..+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444444555555666666555555544332 13455555555555555555555555555532 1223344444555
Q ss_pred HHhcCCHHH
Q 006154 578 LCKFGCYQQ 586 (658)
Q Consensus 578 ~~~~g~~~~ 586 (658)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555554333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00047 Score=62.70 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
.-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|.+-.+.....++....+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3466789999999999999986433 777888888999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHcCCCCCH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFL-CKFGCYQ---QARELMKVMILHGIIPDY 603 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~g~~p~~ 603 (658)
|++.|++.++ +.|+..+|..=+... .+.+... .+..-++.....|..|+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999988 567777765433322 2233322 344444444444444553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00094 Score=55.35 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.+....++..+...|++++|.++++.+.. ..|.+...|..|..++-..|++++|+..|....
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555556666666666666665554 345555566666666666666666666666666
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..++ -++.++-.+...+...|+.+.|.+.|+..+.
T Consensus 97 ~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 97 QIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred hcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6543 3555555566666666666666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=64.50 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+...|++++|++.|+++++.... +...|..+..++...|++++|...++++....+.+...|..++.+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 344566667777777666665332 4556666666666677777777777777666666666666666777777777777
Q ss_pred HHHHHHHHHC
Q 006154 553 FAMFSEMRNV 562 (658)
Q Consensus 553 ~~~~~~~~~~ 562 (658)
+..|++.++.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 7777776663
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00083 Score=51.41 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=39.3
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 190 HLVKLNEIGRFWKLYKEMVSCGY-VENVNTFNLVIYALCKEC--------KLEEALSLYYRMLKSGIWPNVVCFNMIINE 260 (658)
Q Consensus 190 ~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 260 (658)
.+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555555 455555555555444321 233455566666666666666666666655
Q ss_pred HH
Q 006154 261 AC 262 (658)
Q Consensus 261 ~~ 262 (658)
+.
T Consensus 114 Ll 115 (120)
T PF08579_consen 114 LL 115 (120)
T ss_pred HH
Confidence 43
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0008 Score=61.27 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=95.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 437 NYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
+-+.+.+++.+|+..|.+.++... -|.+-|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 347788899999999999988633 36777888888999999999999988888875322 4568899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCh
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIA---EAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 568 (658)
+|.+.|++..+..|.+......|-.+--+.+... .+..-++.....|..|+.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999999998887766666655544444443 333444444444544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=55.13 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
.|+++.|..+++++.+..+. +...+..++.+|.+.|++++|..++++ .+.+. .+....-.++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666665553 333444456666666666666666665 22111 122333344566666666666666
Q ss_pred HHHH
Q 006154 590 LMKV 593 (658)
Q Consensus 590 ~~~~ 593 (658)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.067 Score=51.24 Aligned_cols=277 Identities=12% Similarity=0.009 Sum_probs=144.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
....+.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-++.. +-....+...-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 345667777888888888888877544 45566666666667777777766665555431 1112222233333333344
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH-HHHHHhcCChHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI-INGFCKLGRVEFAEE 310 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 310 (658)
..+|.+.++ +...| ....++..++.. .....-+|.-.+|..+ ..++.-.|+.++|..
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~--~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKL--APSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcc--cccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 444444443 11111 112223333331 1111112333333333 245566788888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCcHhH-------------HHHHHHHHHhcCCH
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDG--YARGGSSEEALRLCDEMVKRGLMPNNVV-------------YNSTIHWLFAEGDV 375 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~-------------~~~ll~~~~~~g~~ 375 (658)
+--.+.+.. ....+..++++ +.-.++.+.|...|++.+..+ |+... +..-.+-..+.|.+
T Consensus 191 ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 777777653 23334444443 334677888888888877663 33221 11122334566777
Q ss_pred HHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 376 EGALFVLSDMIDKH---ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 376 ~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
..|.+.|.+.+... ..|+...|........+.|+.++|+.--+...+.+.. -+..|..-..++.-.++|++|.+-+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766542 3344444555555556666777776666666554211 1122222333444556666666666
Q ss_pred HHHHHC
Q 006154 453 SSMIVR 458 (658)
Q Consensus 453 ~~~~~~ 458 (658)
+...+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.023 Score=52.60 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNV--GIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
+...|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555542 11222333445555555555555555544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0073 Score=57.69 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.+.|...+..+...|++++|...+.+...- ...+ .........|.....+|.+ +++++|.+.+++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~--------~~~~----~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADC--------YEKL----GDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH--------HHHT----T-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH--------HHHc----CCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 344566666677777777777777665431 1110 0000011233333334333 36666666665554
Q ss_pred h----CCCc-cCHHhHHHHHHHHHhc-CCHhHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 174 V----KGHS-VSIHAWNNFLSHLVKL-NEIGRFWKLYKEMVSC----GYVE-NVNTFNLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 174 ~----~g~~-~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
+ .|-. .-...+..+...|... |+++.|.+.|++.... |.+. -..++..+...+.+.|++++|.++|+++
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 1211 0122344444555555 6666666666665532 1000 1234445555666666666666666666
Q ss_pred HhCCCCC-----Chh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 243 LKSGIWP-----NVV-CFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 243 ~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
....... ++. .+...+-++...||...|...+++
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432211 111 122233344455666666666666
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0021 Score=56.11 Aligned_cols=95 Identities=15% Similarity=-0.024 Sum_probs=55.0
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
...|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666666777777777777776542121 12356666777777777777777777766531 22233444444
Q ss_pred HHHH-------hCCChHHHHHHHHH
Q 006154 611 TRFS-------KNCSPEEVIELHDD 628 (658)
Q Consensus 611 ~~~~-------~~g~~~~A~~~~~~ 628 (658)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 66666655444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0021 Score=61.09 Aligned_cols=145 Identities=9% Similarity=0.094 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 430 YSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
.+|..++...-+.+..+.|..+|.+..+.+. ..+.....+++. +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888999999999999999999986532 233333333333 33357777799999999886 56688888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
+.+.++.+.|..+|++....-+. ....|...+..-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999887554 2468999999999999999999999999884 45555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=55.91 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
.|......|...|++++|.+.|.+..+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 345556667777888888777776644
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=54.04 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIA-VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIE 624 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 624 (658)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|++++++ ...+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999885421 2445566689999999999999999988 32211 233444556788999999999999
Q ss_pred HHHH
Q 006154 625 LHDD 628 (658)
Q Consensus 625 ~~~~ 628 (658)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0051 Score=63.53 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFIN--------GKIAEAFAMFSEMRNV-GIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
...|..+|+++.+..|.....|..+..++... ++...+.+..++.... ..+.+...|..+.-.....|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555444444443333221 1223333444433332 12334455666655555667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006154 586 QARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTY 641 (658)
Q Consensus 586 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 641 (658)
+|...++++++. .|+...|..+...+...|+.++|.+.+++... +.|...+|
T Consensus 438 ~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 438 EAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 777777777764 45666777777777777777777777777766 45554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0051 Score=49.21 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPD----YVTYTTLVT 611 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~ 611 (658)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 345556667777777777777777665443 334556666777777777777777776654 122 112222333
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 612 RFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56667777777777655543 23335555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0052 Score=53.77 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++....+.+...+..++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666666666666666665432221 245666666667777777777777777776666666666666777
Q ss_pred HHcCCHHHHHH
Q 006154 544 FINGKIAEAFA 554 (658)
Q Consensus 544 ~~~g~~~~A~~ 554 (658)
...|+...+..
T Consensus 117 ~~~g~~~~a~~ 127 (172)
T PRK02603 117 HKRGEKAEEAG 127 (172)
T ss_pred HHcCChHhHhh
Confidence 66666544443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=42.88 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=49.62 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMILHGI-IPDYVTYTTLVTRFSKNC--------SPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
.|..+...|++...--+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666654422 233566778888888888888888888
Q ss_pred HHHhhc
Q 006154 645 ISPLLG 650 (658)
Q Consensus 645 ~~~~~~ 650 (658)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=61.49 Aligned_cols=132 Identities=15% Similarity=0.063 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCChH
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQ----RIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRN----VGI-AVNKV 569 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 569 (658)
.|..|.+.|.-.|+++.|....+.-. +-|.. ...++..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555666666788888887765432 33332 456788899999999999999998887643 221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMIL----H-GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+.-+|.+.|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455788888888889999988876432 1 12234667888999999999999998887776553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.016 Score=58.26 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
..+.+-+-.|...|.+++|.++-- .-....-|..|...-...=+++-|++.|.+....
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------- 614 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL---------------- 614 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc----------------
Confidence 344455566777777777655422 2222333444444333333444444444333321
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.+-+.+.-++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233444567777777677654 44556677888888888876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=56.15 Aligned_cols=78 Identities=14% Similarity=-0.014 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.+....+.....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3344444445555555555555554432211 12244445555555555555555555555544444444444444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.006 Score=56.09 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 595 (658)
..-++.-...+|.|...|-.|...|...|+.+.|..-|.+..+.. ++|...+..+..++.... ...++..+|++++
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333444555566677777777777777777777777777776642 445555666665554332 3456777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 596 LHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 596 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
... +-|.....-|...+...|++.+|...++.|++.
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 642 224445555555677777777777777777764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=42.61 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGV 634 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 634 (658)
.+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.033 Score=51.54 Aligned_cols=175 Identities=13% Similarity=0.005 Sum_probs=98.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTY---SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK- 441 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 441 (658)
...+...|++++|.+.|+++....+.+ .... -.++.++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334455666666666666666543322 1221 23445566667777777777777666544333333333333321
Q ss_pred -c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 006154 442 -S---------------NN---LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY 502 (658)
Q Consensus 442 -~---------------~~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (658)
. .+ ..+|...|+++++. |-...-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 12344444444443 22223334444433333221 00111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
..+..-|.+.|.+..|..-++.+.+.-|. ...+...++.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24566688889999999999999888776 56677788889999999999888776554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.041 Score=46.51 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=77.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.|++.---.|..++.+.|+..+|...|++....-+--|......+..+....+++.+|...++++.+....+-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555566667777777777777777766543444555556666666667777777777777522222222333 34
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
..+...+...|+..+|+..|+..... -|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45556667777777777777777655 444444444445566666665554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=47.23 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=21.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++.....
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444433322 112223333344444444444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.21 Score=51.18 Aligned_cols=204 Identities=13% Similarity=0.040 Sum_probs=109.4
Q ss_pred ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 178 SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-GYV--------ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 178 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
.|.+..|..+...-...-.++.|...|-+.... |++ .+.....+=+.+| -|++++|.++|-+|.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 467778877777666666666666666554432 111 0111111122222 37888888888777654
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL--PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 326 (658)
| ..|..+.+.||+-...++++. -..+.. .-...|+.+...+.....+++|.+.+..-...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 2 345566677888777777764 111111 11445667777777777777777666553311
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
...+.++.+..++++-..+-..+. -|....-.+..++...|.-++|.+.+-+-- .+ ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHH
Confidence 124455555555555444333322 244445556666777777777766553321 11 123344555
Q ss_pred cCChHHHHHHHHH
Q 006154 407 NGCVKQAFKLHNQ 419 (658)
Q Consensus 407 ~g~~~~a~~~~~~ 419 (658)
.+++.+|.++-+.
T Consensus 891 LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 891 LNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.22 Score=51.03 Aligned_cols=214 Identities=14% Similarity=0.012 Sum_probs=129.4
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
.|-++.+..++......-.++.|+..|-+...-.|. .+...+... .+...-.+=+.+ --|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi---k~vkrl~~i-----~s~~~q~aei~~--~~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI---KLVKRLRTI-----HSKEQQRAEISA--FYGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch---hHHHHhhhh-----hhHHHHhHhHhh--hhcchhHhhhhhh
Confidence 345667777776666666677777666544321111 111222111 011111122222 3489999999998
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG-YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
.+..++ ..+..+.+.|++-.+.++++.--... -..-...|+.+...+.....+++|.++|..-..
T Consensus 759 d~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 759 DADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred ccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 887653 34667778888877766665421100 011145788888888888899999998876432
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
. ...+.++.+..++++-+.+-.. ++.+....-.+.+++.+.|.-++|.+.+-+.. .|. .
T Consensus 825 -~---e~~~ecly~le~f~~LE~la~~--------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----a 883 (1189)
T KOG2041|consen 825 -T---ENQIECLYRLELFGELEVLART--------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----A 883 (1189)
T ss_pred -h---HhHHHHHHHHHhhhhHHHHHHh--------cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----H
Confidence 1 2356677777777777776666 33366677788889999999988887765432 222 2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006154 330 LIDGYARGGSSEEALRLCDE 349 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~ 349 (658)
-+..|...+++.+|.++-+.
T Consensus 884 Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777766544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.015 Score=53.56 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD---ASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
|...|-.|...|...|+.+.|...|....+. ..+++..+..+..++... ....++..+|+++....+.+..+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 6667777777777777777777777776665 233555555555554332 234566777777777777677777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 77777777777777777777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.032 Score=50.22 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
+++.....+..+...|++++|...|+.+..+ ++..+..+.+...++.++.+.|+++.|...++++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~---------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR---------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666777777888888888888877753 4555666677777888888888888888888888
Q ss_pred HhCCC
Q 006154 173 KVKGH 177 (658)
Q Consensus 173 ~~~g~ 177 (658)
.+.-+
T Consensus 69 i~~yP 73 (203)
T PF13525_consen 69 IKLYP 73 (203)
T ss_dssp HHH-T
T ss_pred HHHCC
Confidence 77533
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.045 Score=49.27 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHIC--PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM 425 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (658)
.+...|++.+|...|+.+....+. -.....-.++.++.+.|+++.|...++..++..+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 344555555555555555543211 1122233444555555666666666655555433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.001 Score=47.04 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+...|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 12333444444444444444444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=54.85 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHH
Q 006154 288 NSVTHNCIINGFCK-----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG----------------SSEEALRL 346 (658)
Q Consensus 288 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~ 346 (658)
+..+|..+++.|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+.. +-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55566666666653 3667777777888888888888888888887765421 22345555
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 347 CDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 347 ~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
+++|...|+.||..++..+++.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 55555555555555555555555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=47.05 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG-CYQQARELMKVMIL 596 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 596 (658)
+..|..++..+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555532 223444555555555555 45555555555443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=47.24 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|++++|.++++.+....|.+..++..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555444555555555555555555555555555544
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.23 Score=48.45 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG-------TLIDGYCK----GGNIEGAVQVYENMKKVEKKP 497 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~~~~~~~~~ 497 (658)
..++..++....+.++..+|.+.+.-+... .|+...-. .+.+..+. .-+...-+.+|+.....++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 356777888888888888888888766553 23322111 12222221 11223334455555544332
Q ss_pred CHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHHcCCCCHhhHHHHHH----HHHH---cCCHHHHHHHHHHHHHCCCCC
Q 006154 498 NLVIYNSII---NGLCKDAS-LDAAKSLLQASQRIGLLDAITYNTLIN----GYFI---NGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 498 ~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p 566 (658)
......-++ .-+-+.|. -++|..+++.+.+-.+-|...-|.+.. +|.. .....+-+.+-+-+.+.|++|
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 111222222 23445555 788899998888776666555444332 2222 122333344444456677776
Q ss_pred ChHH----HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006154 567 NKVG----YNILINF--LCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQT 640 (658)
Q Consensus 567 ~~~~----~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 640 (658)
-.+. -|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++.. ++|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 5433 3444433 4567888888765555544 789999999999999999999999999876 4667766
Q ss_pred HHHHH
Q 006154 641 YNAII 645 (658)
Q Consensus 641 ~~~l~ 645 (658)
++.-+
T Consensus 528 ~dskv 532 (549)
T PF07079_consen 528 RDSKV 532 (549)
T ss_pred HHHHH
Confidence 66544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.14 Score=46.03 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-----HHHHH
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVI-----YNSII 506 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~ 506 (658)
.+.++.++.-.+.+.-....+++.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444455555555555556666666554444555555666666666666666666665544322222222 22222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+.-.+++..|...+.++...++.++...|.-.-+..-.|+..+|++..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566777777777777777767777766666666677777777777777774
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0061 Score=53.17 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHH
Q 006154 143 KATPAVFDALVRACTQI-----GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVN 217 (658)
Q Consensus 143 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 217 (658)
..+..+|..++..|.+. |-++-....+..|.+.|+.-|..+|+.|+..+=+ |.+. |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 34555666666666533 5566666677777777777777777777776543 2221 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 266 (658)
.+.++..-| -.+-+-|++++++|...|+-||..++..++..+++.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 12345678888888888888888888888888866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.11 Score=46.73 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=89.4
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH---
Q 006154 182 HAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII--- 258 (658)
Q Consensus 182 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--- 258 (658)
...+.++..+...|.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35567777777788888888888888887666777778888888888888888888888776654344444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 259 --NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 259 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
..|.-.+++..|...+.++..+.. .|...-|.-.-+..-.|+...|.+.++.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~----~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP----RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC----CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 233445666677777766322211 13333343333344456777777777777765 444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.36 Score=49.00 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=88.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+..+|...+..-...|+.+.+.-++++..-. +..-...|-..+.-....|+.+-|..++....+...+ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 3445666666666667777666666655431 1112222333333333446666666666655544222 2222222222
Q ss_pred HHH-hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH---HHHHHHHCCCCCCh--HHHHHHHH-HHHh
Q 006154 508 GLC-KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA---MFSEMRNVGIAVNK--VGYNILIN-FLCK 580 (658)
Q Consensus 508 ~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~--~~~~~l~~-~~~~ 580 (658)
.+. ..|+++.|..+++.+.+.-+.....-..-+....+.|..+.+.. ++.........+.. ..+.-..+ .+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 222 35577777777777666653333333444445555666666652 22222221111111 11111111 1223
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN 616 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 616 (658)
.++.+.|..++.++.+. .+++...|..++......
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 45666777777777664 455555666666554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=45.63 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..+.+.|++++|.+.|+++.+..+. +...+..+..++.+.|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544322 444444555555555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=45.81 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=22.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544432 22333444444455555555555555544444
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.31 Score=47.47 Aligned_cols=447 Identities=12% Similarity=0.133 Sum_probs=232.1
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
|-+..+|..++.-+...+..++.++.++++.. ..|--+.+|...+..-....+++....+|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~------------------pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS------------------PFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC------------------CCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 45677888888888889999998888888775 566677889999998888999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCH------hHHHHHHHHHHh-CCCCcC-HHHHHHHHHHHH---------hcCCHH
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEI------GRFWKLYKEMVS-CGYVEN-VNTFNLVIYALC---------KECKLE 233 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---------~~g~~~ 233 (658)
+.+... .+...|...+..-.+.+.. ....+.|+-.+. .++.|- ...|+..+..+- .+.+.+
T Consensus 101 rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 101 RCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 998874 4577787777766554421 122344444443 334432 334555443321 233455
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHH------HHHHHHHh---cCC----HHHHHHHHHHhcccccCCcC----CChhhHHHH
Q 006154 234 EALSLYYRMLKSGIWPNV-VCFN------MIINEACQ---VGD----LEFALKLFRKMGVMSGDSVL----PNSVTHNCI 295 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~-~~~~------~li~~~~~---~g~----~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l 295 (658)
.....+.+|+...+. +. ..|+ .=++.... .|+ +..|.+.++++..+ ..|.. .+..+++..
T Consensus 179 ~iR~~Y~ral~tP~~-nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nl-t~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 179 KIRNGYMRALQTPMG-NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNL-TRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHcCccc-cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-hccccccCchhhhhhccc
Confidence 666777777654221 11 1111 11111110 111 33455555553111 11111 112222221
Q ss_pred HH-----------HHHhc-----CCh--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 296 IN-----------GFCKL-----GRV--EFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 296 i~-----------~~~~~-----g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
-+ --... |+. ....-++++.... +.-....|----..+...++-+.|+......... .|
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sp 333 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SP 333 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CC
Confidence 11 00000 000 0000011111100 0111111111112223344555555444332221 12
Q ss_pred cHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHH
Q 006154 358 NNVVYNS-TIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR---NGCVKQAFKLHNQVLEEHMVGDAYSYN 433 (658)
Q Consensus 358 ~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (658)
+ .+. +-..|--..+-+.....|+...+. ...--..+..=.. .|+++...+++-+-.. .-..+|.
T Consensus 334 s---L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C 401 (660)
T COG5107 334 S---LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFC 401 (660)
T ss_pred c---hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHH
Confidence 2 111 222233333333333444433221 0000000000000 1223222222211111 1345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..++...+..-++.|..+|-+..+.+ ..+++..+++++.-++ .|++..|..+|+.-... ++.+..-....+..+...
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHh
Confidence 77777778888888899998888887 5577888888887665 57888888888876654 333333445566667778
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
++-..|..+|+...+.-.. -...|..++.--..-|+...+..+-+.|.+. -|...+.......|
T Consensus 480 nde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 480 NDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred CcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 8888888888866654333 3678888888888888888888887777763 44444333333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=46.23 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-CHhHHHHHHHHHHh
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN-EIGRFWKLYKEMVS 209 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 209 (658)
+.+|..+...+...|++++|+..|++..+.++. ++..|..+..++.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555555555555555555555554322 4455555555555555 45566655555554
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0041 Score=58.93 Aligned_cols=286 Identities=16% Similarity=0.087 Sum_probs=139.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhcccccC--Cc-CCChhhHHHHHH
Q 006154 225 ALCKECKLEEALSLYYRMLKSGIWPNVV----CFNMIINEACQVGDLEFALKLFRKMGVMSGD--SV-LPNSVTHNCIIN 297 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~~~~li~ 297 (658)
-+|+.|+....+.+|+..++.|.+ |.. .|..|.++|...+++++|+++...=. .... |- .-...+...|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-tlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-TLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-HHHHHhcchhccccccccccc
Confidence 478889999999999988887755 433 35555666666777888877665410 0000 00 001112222333
Q ss_pred HHHhcCChHHHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 298 GFCKLGRVEFAEEIRYAMI----KAGI-DCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
.+--.|.+++|.....+-. +.|- ......+-.|...|...|+--.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 3334455555543322221 1110 0112233334444433332100000 000011111100
Q ss_pred CCHHHHHHHHHHHH----hCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhc
Q 006154 373 GDVEGALFVLSDMI----DKHI-CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE----HMV-GDAYSYNILINYLCKS 442 (658)
Q Consensus 373 g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 442 (658)
..++.|.++|.+=+ +.|- ..-...|..|.+.|.-.|+++.|+...+.-++. |-. .....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01122223222211 1110 011234555666666677788777766543321 211 1234566677777778
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhc
Q 006154 443 NNLAAAKQLLSSMIVR----GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV-----EKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 512 (658)
|+++.|.+.|+..... |- ........+|...|.-..++++|+..+.+-... ...-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888887777654322 21 112344455666666667777777776543321 1122445677788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQR 527 (658)
Q Consensus 513 g~~~~a~~~~~~~~~ 527 (658)
|..+.|..+.+...+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777665544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.42 Score=46.57 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=68.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHH
Q 006154 140 EICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTF 219 (658)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 219 (658)
...|.+...|..|+.-|..+|..++..+++++|..- ++--+.+|...+.+-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 367889999999999999999999999999999763 33355678888888888889999999999998764 456667
Q ss_pred HHHHHHHHh
Q 006154 220 NLVIYALCK 228 (658)
Q Consensus 220 ~~l~~~~~~ 228 (658)
...+.-..+
T Consensus 113 ~lYl~YIRr 121 (660)
T COG5107 113 MLYLEYIRR 121 (660)
T ss_pred HHHHHHHHh
Confidence 666654444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.19 Score=50.99 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 006154 287 PNSVTHNCIINGFCKLGRVEFAEEIR---------YAMIKAGIDCNVRTYATLIDGYARGGS--SEEALRLCDEMVKRGL 355 (658)
Q Consensus 287 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~ 355 (658)
|..+.+.+-+..|...|.+++|.++- +.+... ..+.-.++.--.+|.+..+ +-+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566677777777776531 111111 1122223333344544333 2333444556666676
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 356 MPNNVVYNSTIHWLFAEGDVEGALFVLSD 384 (658)
Q Consensus 356 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 384 (658)
.|+.... ...++-.|++.+|.++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 6665432 2334445666666666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.031 Score=52.12 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
.|++++|...|+.+.+..|.+ +.++..++..|...|++++|...|+.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444443331 2333344444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.029 Score=52.39 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTL 539 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l 539 (658)
..|...+..+.+.|++++|+..|+.+.+..+... ...+..+...|...|++++|...|+.+.+..+. ...++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444556778888888887777533211 245667777778888888888888888776655 45566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+..+...|+.++|..+|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777788888888888888774
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.38 Score=43.57 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..+..-+....+.|++++|.+.|+.+..+ ++..|-.+.+...++-++.+.+++++|+..+++..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---------------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR---------------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555556666789999999888877753 45666677888888889999999999999999988
Q ss_pred hCCCccCHHhHHHHHHHHH
Q 006154 174 VKGHSVSIHAWNNFLSHLV 192 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~ 192 (658)
..-+......|-..|.+++
T Consensus 99 ~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhCCCCCChhHHHHHHHHH
Confidence 8655444445555566555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.033 Score=47.17 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCcHhH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK-----RGLMPNNVV 361 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 361 (658)
....++..+...|++++|..+...+.... |-+...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566666777777777777777665 55666777777777777777777777766642 355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.62 Score=44.99 Aligned_cols=23 Identities=22% Similarity=-0.010 Sum_probs=15.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMG 118 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~ 118 (658)
+|..++......|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45666777777777777766654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=42.51 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+.+.+++++|.++++.+....|.++..|...+.++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.069 Score=44.76 Aligned_cols=88 Identities=8% Similarity=-0.016 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
-+...|++++|..+|.-+...++.+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34567888888888888887777777777778877878888888888887775543 23444455677788888888888
Q ss_pred HHHHHHHHH
Q 006154 588 RELMKVMIL 596 (658)
Q Consensus 588 ~~~~~~~~~ 596 (658)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887776
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.2 Score=47.29 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLV 222 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (658)
.+.....-+....+...++.|+.+.+.-- ..++ ..........+.+.|++++|...|-+-+.. +.|. .+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 34456667788888888888888766432 2211 223444556677899999999999887753 2332 24
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhc
Q 006154 223 IYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 223 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 302 (658)
+.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+. .. .|.. ..-....+..+.+.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~---~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK---CD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc---CC-Ccce--eeeHHHHHHHHHHh
Confidence 55566666777778889999998876 666667899999999999999998887 22 2221 11245567777788
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
+-.++|..+-..... +......+ +-..|++++|++.+..+.
T Consensus 477 nyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 888888776655542 23333333 345688999999887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.37 Score=46.96 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 256 MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK---LGRVEFAEEIRYAMIKAGIDCNVRTYATLID 332 (658)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 332 (658)
.++-+|....+++...++.+.+.......+.-....-....-++-+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788888888874322222222222222334445555 7888888888888555555777788887777
Q ss_pred HHH
Q 006154 333 GYA 335 (658)
Q Consensus 333 ~~~ 335 (658)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.3 Score=47.02 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI 295 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 295 (658)
....-+..+++...++-|+.+-+. .+..++.. ......+-+.+.|++++|...+-+. .+. +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t---I~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIET---IGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---ccc-CCh-----HHH
Confidence 445566777777888888877544 22222221 2223334445678999998888772 221 222 234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCH
Q 006154 296 INGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 296 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~ 375 (658)
+.-|....+..+-...++.+.+.| -.+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 566666677777777888888887 4466667788889999998888777666544 2211 11234556666777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|..+-.+... .......++ -..+++++|++++..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777665554432 333334333 3567888888888765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.26 Score=41.47 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+...|++++|..+|.-+...++- +..-+..|..++-..++++.|...+.........|+..+-....+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 45678888888888888775443 55556777777778888899998888888877778888888888888899999998
Q ss_pred HHHHHHHH
Q 006154 554 AMFSEMRN 561 (658)
Q Consensus 554 ~~~~~~~~ 561 (658)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888877
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.6 Score=46.99 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcccCCCCCC--HHhHHHHHHHHH-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHS--LESSCAIVHLLV-NWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDA 151 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~--~~~~~~~~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (658)
..|++-++-+.++...+|. +.++..++.+|. ...+++.|+..+++.+..... .++.+. --..-..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~----------k~~~~~l 105 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL----------KFRCQFL 105 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH----------HHHHHHH
Confidence 3566666666654444443 345778899988 678999999999987653111 000000 0122335
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC----CccCHHhHHHH-HHHHHhcCCHhHHHHHHHHHHhCC---CCcCHHHHHHHH
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKG----HSVSIHAWNNF-LSHLVKLNEIGRFWKLYKEMVSCG---YVENVNTFNLVI 223 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~l~ 223 (658)
+++.+.+.+... |...+++..+.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|...++..++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 677777777666 988888876632 22223333333 333333479999999999888542 234445555555
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhCCC---------CCChhhHHHHHHHHH--hcCCHHHHHHHHHHh
Q 006154 224 YALC--KECKLEEALSLYYRMLKSGI---------WPNVVCFNMIINEAC--QVGDLEFALKLFRKM 277 (658)
Q Consensus 224 ~~~~--~~g~~~~A~~~~~~m~~~~~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 277 (658)
.+.. +.+..+++.+..+++..... .|...+|..++..++ ..|+++.+...++++
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5443 56667788888877743211 234556777776655 467777776666654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.021 Score=41.36 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.|.+.+++++|.+.++.+...+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555532 22344444455555555555555555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.94 Score=43.47 Aligned_cols=311 Identities=14% Similarity=0.046 Sum_probs=168.6
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHH--HHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAI--VHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAV 148 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (658)
-.+|..+-++|+-..+..| |..+ +-+-.-.|+-..|++.-.+..+ ++. ....+-+
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~------------lls----sDqepLI 122 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASK------------LLS----SDQEPLI 122 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHh------------hhh----ccchHHH
Confidence 3567888888887665443 3333 3344456777777766554432 111 0111222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN----NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (658)
...-.++-.-.|+++.|.+-|+.|.. ++.+-. .|.-.-.+.|..+.|+..-+..-..- +.=...+...+.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe 196 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHH
Confidence 22223344556999999999999986 333322 23333356788888888877776542 222557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHHh---cCCHHHHHHHHHHhcccccCCcCCChhh-HHHHHH
Q 006154 225 ALCKECKLEEALSLYYRMLKSG-IWPNVVC--FNMIINEACQ---VGDLEFALKLFRKMGVMSGDSVLPNSVT-HNCIIN 297 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~ 297 (658)
..|..|+++.|+++.+.-.... +.+++.- -..|+.+-.. .-+...|...-.+. ..+.||.+. -..-..
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-----~KL~pdlvPaav~AAr 271 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-----NKLAPDLVPAAVVAAR 271 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-----hhcCCccchHHHHHHH
Confidence 8888899999988888765432 3344331 2222222111 23344444444331 123444322 223346
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-cHhHHHHHHHHHHhcCCH
Q 006154 298 GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR-GLMP-NNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~ll~~~~~~g~~ 375 (658)
++.+.|++.++-.+++.+-+.. |...... +..+.+.|+ .++.-++...+. .++| +......+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 6777888888888888877763 3333322 222233443 333333332221 1223 344555566666667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHc
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCR-NGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 423 (658)
..|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 346 ~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 766655555443 34556666666555433 36777777666666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.94 Score=43.46 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=133.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH----HHhcCCh
Q 006154 337 GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL--FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG----LCRNGCV 410 (658)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~ 410 (658)
.|+-..|.++-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|.. |+.+-..=+++ --+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 34555555444433211 122333333333332 234666666666666654 22222222222 2245666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCChHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIIT--YGTLIDGYC---KGGNIEGAV 484 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~--~~~li~~~~---~~g~~~~A~ 484 (658)
+.|..+-+...+.-+. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 6666666655554322 33455566666666666666666665544321 2222211 111221111 123344454
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-C
Q 006154 485 QVYENMKKVEKKPNLVI-YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-V 562 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 562 (658)
..-.+..+ ..||... -.....++.+.|+..++-.+++.+-+..|. +.++. +..+.+.|+ .++.-+++... .
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 44444443 3344332 222345566677777777777777666442 22221 122333443 23333333221 0
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHC
Q 006154 563 GIAV-NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF-SKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 563 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~ 632 (658)
.++| +..+...+..+-...|++..|..--+.... ..|....|..+.+.- ...|+-.++..++-+.++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 345555666666667777666666555554 356666666555553 3347777777777666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.023 Score=48.15 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=24.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
+..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|.+.|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=43.04 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNV----GI-AVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666665555555431 10 011 3344555555555555555555555544
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.1 Score=43.33 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-.++... ..++..|...+.+|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 334445556677666666655442 35667777777777777777766654321 125667777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
+..+|..+..+ ++ +..-+..|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 77777666555 11 2345666777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=42.89 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 568 KVGYNILINFLCKFGCYQQARELMKVMILH----GI-IPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 568 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
..+++.+...|...|++++|+..+++..+. |- .|+ ..++..+...+...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999998843 21 122 45678888899999999999999998765
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.3 Score=43.38 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 403 GLCRNGCVKQAFKLHNQVLEEH---MVGDAYSYNILINYLCK---SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.++..++..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3445555555555555554431 00011111122333444 55566666666554444444555555555444321
Q ss_pred ---------cCChHHHHHHHHHHHhC
Q 006154 477 ---------GGNIEGAVQVYENMKKV 493 (658)
Q Consensus 477 ---------~g~~~~A~~~~~~~~~~ 493 (658)
....++|+..|.+.-+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcC
Confidence 11256666666665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.079 Score=52.21 Aligned_cols=66 Identities=6% Similarity=-0.103 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA---ITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+...+..+..+|...|++++|...|++..+..+.+. .+|..+..+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566788888899999999999999999998888865 45888999999999999999999998875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.54 Score=37.53 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++.+..+|+-+.-.++...+.+.+..++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444443333344444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.16 Score=46.32 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--
Q 006154 101 VHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS-- 178 (658)
Q Consensus 101 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-- 178 (658)
+.-+.+.|++..|...|...++ .|+..+-.+.++.-|..++...|++++|..+|..+.+.-++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~---------------~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIK---------------KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---------------cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 3334445556666665555554 24444445555556666666666666666666666553221
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
--+.++..|..+..+.|+.++|...|+++.+.
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555555556666666666666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.1 Score=42.25 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=52.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNV---------------GIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..++..++.++++.|+.+....+.+..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567788888888888888888887765221 1345555666666666666666666666666553
Q ss_pred -cCCCCCHHHHHHHHHHH
Q 006154 597 -HGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 597 -~g~~p~~~~~~~l~~~~ 613 (658)
.+++-+...|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 34555556666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.61 Score=43.16 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
..|++.+|..+|.......+.+...--.++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444444444444444444444444444444555555555555544444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.12 Score=49.69 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=80.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
-...|.+.|++..|...|++.... +. +...-+.++...... .-..+++.+.-+|.+.+++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH-------HHHHHhhHHHHHHHhhhhH
Confidence 356777888888888888876642 00 000001111111100 0334566677777777777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCh-HHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTT-LVTRFSKNCSP-EEVIELHD 627 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~-~~A~~~~~ 627 (658)
.+|++.-.+.+..+ ++|....---..++...|+++.|+..|+++++. .|+...... ++..-.+.... +...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777764 456666666677777777777777777777763 555444333 33333333332 33466677
Q ss_pred HHHHC
Q 006154 628 DMVLS 632 (658)
Q Consensus 628 ~m~~~ 632 (658)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 77654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.13 Score=50.87 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL----VIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778889999999999999999999999885 4443 35889999999999999999999999886
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.2 Score=41.29 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
-.......|++.+|..+|......... +...-..+...|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334556677777777777777765433 3455556777777777777777777776543211111122222333444444
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWP-NVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
..+...+-.+.-.. | |...-..+...+...|+.++|++.+-.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444443332 3 444445555666666666666666555
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.22 Score=40.77 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=64.8
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
++..+..-+....+.|++++|.+.|+.+..+ ++..+-...+-..|+.+|.+.|++++|...+++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR---------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4455666677777889999998888877763 5566667788888999999999999999999999
Q ss_pred HhCCCccCHHhHHHHHHHHHhc
Q 006154 173 KVKGHSVSIHAWNNFLSHLVKL 194 (658)
Q Consensus 173 ~~~g~~~~~~~~~~ll~~~~~~ 194 (658)
++..+...-..|-..+.+++..
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHH
Confidence 9876554445555555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.3 Score=40.23 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006154 371 AEGDVEGALFVLSDMIDKHI--CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM 425 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (658)
+.|++++|...|+.+..+.+ +-...+.-.++.++.+.+++++|....++.....+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 34555555555555543311 11222333344444455555555555555544433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.35 Score=39.70 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
...+.|++++|.+.|+.+....|. ...+...++.+|.+.+++++|...+++.++....--..-|.....+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344567777777777777766654 455566677777777777777777777776432222233444444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.9 Score=46.39 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006154 325 RTYATLIDGYARGG--SSEEALRLCDEMVK 352 (658)
Q Consensus 325 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 352 (658)
.-...+|..|.+.+ .++.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33345556666655 55566655555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.82 Score=47.11 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=94.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV------IYNSIINGLC----KDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
.+++...-.|+-+.+++.+.+..+.+---.+. .|...+..++ .....+.|.++++.+....|......-.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444445566666666666554421111111 2222222222 2446777888888888887776666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVG---IAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT-RFS 614 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~ 614 (658)
-.+.+...|++++|++.|++..... .......+--++.++.-.+++++|.+.|.++.+.. .-+..+|.-+.. ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 6777778888888888888765311 01123344556677778888888888888888642 223333333322 244
Q ss_pred hCCCh-------HHHHHHHHHHHH
Q 006154 615 KNCSP-------EEVIELHDDMVL 631 (658)
Q Consensus 615 ~~g~~-------~~A~~~~~~m~~ 631 (658)
..|+. ++|.+++.+...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 56666 777777776544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.5 Score=43.69 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
...+|.++.+++.+.++.|+.+...+..+....++++.|...|++.... .|| ..+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566777777788888888888888888777788888888888888774 455 4556666666777888888888888
Q ss_pred HHHHcCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 593 VMILHGIIPDYV---TYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 593 ~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+..+. .|... .....+..|+.. ..++|+.++-+-.
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 86653 34322 233334455544 3666777665433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.2 Score=48.33 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS 514 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 514 (658)
-.+.|.+.|++..|..-|++.+.. + -|.+.-+.++..... ..-...+..+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------L-EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------h-hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 357888999999999988886653 0 011111112211111 1123456677778888899
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHhcCCH-HHHHHHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG-YNILINFLCKFGCY-QQARELMK 592 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~-~~A~~~~~ 592 (658)
+.+|....++.....+.|..+..--..+|...|+++.|+..|+++++. .|+... -+.++.+-.+..+. +...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888999999999999999999884 455443 34444444444433 34467777
Q ss_pred HHHHc
Q 006154 593 VMILH 597 (658)
Q Consensus 593 ~~~~~ 597 (658)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 77753
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.8 Score=36.60 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
...++.+...|+-|+-.+++..+.+ .-++++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444555555555555555443 233455555555555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.42 Score=37.95 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=70.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 006154 100 IVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 100 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 179 (658)
-+-+++..|+++.|.+.|.+.+. -+|.++.+|+.-..++.-+|+.++|++=+++..+..-..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 34567788899999988888876 678888899999999999999999998888888743332
Q ss_pred CHHhHH---HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006154 180 SIHAWN---NFLSHLVKLNEIGRFWKLYKEMVSCG 211 (658)
Q Consensus 180 ~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~g 211 (658)
+...+. .-...|...|+-+.|..=|+..-+.|
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 433333 33446677788888888888777766
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.28 Score=38.92 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCY 584 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 584 (658)
+....|+.+.|.+.|.+.....|..+.+||.-..++--.|+.++|+.-+++..+..-..+. ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567788888888888888888888888888888888888888888888888774212122 2233444567778888
Q ss_pred HHHHHHHHHHHHcC
Q 006154 585 QQARELMKVMILHG 598 (658)
Q Consensus 585 ~~A~~~~~~~~~~g 598 (658)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888777665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=3.1 Score=42.58 Aligned_cols=422 Identities=12% Similarity=0.060 Sum_probs=221.4
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVN-TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
+...|..++.---.....+.+..+++.++.. -|-.. .|......-.+.|..+.+.++|++-+.. ++..+..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556666666554455556777777777753 24433 4455555556778888888888887653 444555565555
Q ss_pred HHHH-hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 259 NEAC-QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 259 ~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
..++ ..|+.+...+.|+....+.+..+. ....|...|.--...+++.....+++++++. ....|+....-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~- 194 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQ- 194 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHH-
Confidence 5444 346777777777775444444333 3345666666666666677777777776643 22223222222211
Q ss_pred CChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHH-hcCChHH
Q 006154 338 GSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HICPDHFTYSILTKGLC-RNGCVKQ 412 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~g~~~~ 412 (658)
..... .+.. ....+++.++-...... ...+.......-+.-.. ..+..++
T Consensus 195 ------------~l~~~-~~~~------------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 195 ------------LLNQN-EEKI------------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred ------------HHhcC-Chhh------------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 11100 0000 00011111111111000 00000011111111000 0111222
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---L----IPDIITYGTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~p~~~~~~~li~~~~~~g~~~~A~~ 485 (658)
+.....+.... --.++.......+....++.-+.+. + .++..+|...+.--.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 22222211111 1112222223333334444444331 1 2345678888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
+|+...-. +..-...|-..+.-....|+.+-|..++....+-..+ .+.+.-.-....-..|+++.|..+++.+.+. +
T Consensus 319 l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~ 396 (577)
T KOG1258|consen 319 LFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y 396 (577)
T ss_pred HHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C
Confidence 99887642 2223345555555556669999999998888877766 3333333333344567999999999999885 3
Q ss_pred CCChHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHHHHH----HHH-HHhCCChHHHHHHHHHHHHCCCC
Q 006154 565 AVNKVG-YNILINFLCKFGCYQQAR---ELMKVMILHGIIPDYVTYTTL----VTR-FSKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 565 ~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~~~~~l----~~~-~~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
|+..- -..-+....+.|+.+.+. +++..... | .-+..+...+ .+. +.-.++.+.|..++.+|.+. .+
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~ 472 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LP 472 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CC
Confidence 55432 223345566778888777 33333332 1 1122222222 222 33467899999999999985 56
Q ss_pred CCHHHHHHHHHHhhcCC
Q 006154 636 PDNQTYNAIISPLLGEK 652 (658)
Q Consensus 636 p~~~~~~~l~~~~~~~g 652 (658)
++...|..+++-..-.+
T Consensus 473 ~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQP 489 (577)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 66677888877766554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.77 Score=38.37 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.++..+...+.......+++.+...+..++..++.++..|++.+ ..+....++. ..+......++..|.+.+-
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444555555666666666665555445566666666666543 2333333331 1223333445666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 584 YQQARELMKVMILHGIIPDYVTYTTLVTRFSKN-CSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 584 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
++++..++.++-. . ...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 6666666655532 1 1122222222 6667777666541 155566666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.27 Score=44.91 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-hHHHHHHHHHHHhcCCHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVN-KVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 586 (658)
.|++..|...|....+..|. .+.++--|+..+...|++++|..+|..+.+. +-.|. +.++--|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555555554443 3344444555555555555555555555432 10111 2344444455555555555
Q ss_pred HHHHHHHHHHc
Q 006154 587 ARELMKVMILH 597 (658)
Q Consensus 587 A~~~~~~~~~~ 597 (658)
|...|++..+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.45 E-value=5.6 Score=44.33 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--HHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG--YNILINFLC 579 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~ 579 (658)
|.+..+.+...+.+++|.-.|+..-+. ...+.+|-.+|++.+|+.+..++... -+... -..|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 334444445566666666665543322 33455666677777777776666431 12221 245666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 580 KFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
..+++-+|-++..+..+. | ...+..|++...+++|.++..
T Consensus 1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 777777777776666542 1 122333444445555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.4 Score=45.54 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 397 YSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
+..++....-.|+-+.+++.+.+..+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 444555555566666676666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.9 Score=38.70 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
..|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. +.-+..|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44555667788888999998888777642 222333222 223456777777777764 23345677777788
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhc
Q 006154 227 CKECKLEEALSLYYRMLKS--GIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 302 (658)
..+|.++.|-..+++.-+. ++.|+.. .|..-+...-..++...|.+++ ......+.+.
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~------------------gk~sr~lVrl 163 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY------------------GKCSRVLVRL 163 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH------------------HHhhhHhhhh
Confidence 8888888777777665431 2334322 2222222222333333333333 3344555666
Q ss_pred CChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCcHhHHHHHHHHHHhcCC
Q 006154 303 GRVEFAEEIRYAMIKA----GIDCN-VRTYATLIDGYARGGSSEEALRLCDEMVKRGL---MPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~---~p~~~~~~~ll~~~~~~g~ 374 (658)
.++++|-..+.+-... .--++ -..|...|-.+.-..++..|.+.++.--+.+- .-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 6666665444332211 00111 12344444555556677777777666433321 11333445555544 3455
Q ss_pred HHHHHHH
Q 006154 375 VEGALFV 381 (658)
Q Consensus 375 ~~~a~~~ 381 (658)
.+++.++
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.079 Score=49.15 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCcCHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-----CGYVENVNTFNL 221 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~ 221 (658)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35556666666666666666666666665433 556666667777777766666666666654 466666666665
Q ss_pred HHHH
Q 006154 222 VIYA 225 (658)
Q Consensus 222 l~~~ 225 (658)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.8 Score=43.32 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+..++.+.|+.++|.+.+.++.+..+. ...+...|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445556666666666665544433 334555566666666666666666655543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.3 Score=44.00 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHH---HcCCCCHhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 514 SLDAAKSLLQASQ---RIGLLDAITYNTLINGYFI---------NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 514 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
..+.|..+|.+.. +..|.....|..+..++.. ..+..+|.++.++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3466777777777 5555556666666555543 234567888888888876 55788888888888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhcCC
Q 006154 582 GCYQQARELMKVMILHGIIPDY-VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN---QTYNAIISPLLGEK 652 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g 652 (658)
|+++.|...|++.... .||. .+|......+.-.|+.++|.+.+++..+ ..|-. ......++.|+..+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 9999999999999985 5664 4565566667778999999999999776 56655 33334444555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.3 Score=39.04 Aligned_cols=199 Identities=19% Similarity=0.145 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEE-HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID- 472 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~- 472 (658)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444455555555555555555555432 112233444445555555555666666666555532222 111111112
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEK--KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKI 549 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 549 (658)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.......+. ....+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666644211 012223333333344556666666666666666555 455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666553 222 23333333334455556666666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.21 Score=40.46 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=31.1
Q ss_pred ccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 006154 281 SGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA-GIDCNVRTYATLIDGY 334 (658)
Q Consensus 281 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~ 334 (658)
......|+..+..+++.+|+..|++..|.++.+...+. +++-+..+|..|++-.
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33445566666666666666666666666666665443 4455555666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.2 Score=39.54 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 396 TYSILTKGLCRNGCV---KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
++..++.++...+.. ++|..+++.+...... .+.++..-+..+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555566555543 3444455555443322 2334444455555566667777777776664
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.4 Score=43.64 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHh
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDL-EFALKLFRKM 277 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 277 (658)
+-+++++++|...|+.||-.+-..++.++.+.+-. .+..+++-.|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 45788889999999999998888888888877653 3444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.64 Score=43.53 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=109.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCh
Q 006154 405 CRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI----ITYGTLIDGYCKGGNI 480 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 480 (658)
-..|++.+|-..++++++..+. |...++..=.++...|+.+.-...++++... ..++. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3578888888889998887554 7888888888888899988888888888765 22333 3333444556678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 481 EGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 481 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
++|++.-++..+.+. .|.....+....+-..|++.++.++..+-...-.. -...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998888643 36677778888888899999998887764432111 2233444455566778999999999
Q ss_pred HHHH
Q 006154 557 SEMR 560 (658)
Q Consensus 557 ~~~~ 560 (658)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.078 Score=33.67 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF 187 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 187 (658)
.++..+...|.+.|++++|.++|++..+..+. |+..|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45666777777777777777777777776432 45555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.098 Score=33.20 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
..+...|...|++++|.++++++.+..|.++..+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 344444444444444444444444444444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.9 Score=38.25 Aligned_cols=222 Identities=18% Similarity=0.060 Sum_probs=161.0
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVR-GLIPDIITYGTLIDGYCKGGNIEGAV 484 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 484 (658)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666666555332 13567777888888999999999988887752 23345566667777778888899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 485 QVYENMKKVEKKPNLVIYNSIIN-GLCKDASLDAAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
..+.........+ ......... .+...|+++.|...++......+ .....+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988754443 222223333 78899999999999999876544 244555555556778899999999999998
Q ss_pred HCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 561 NVGIAV-NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 561 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 853 23 3677888889999999999999999999875 343 445555555555777899999999888874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.1 Score=45.62 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=88.1
Q ss_pred HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 006154 262 CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSE 341 (658)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 341 (658)
.-.|+++++.++...-. +. ..++ ..-.+.++.-+-+.|..+.|+++..+-. .-.+...+.|+++
T Consensus 272 v~~~d~~~v~~~i~~~~-ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN-LL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH-TG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh-hc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 34677777666665200 11 1122 3346777777778888888777644332 1234556778888
Q ss_pred HHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 342 EALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 342 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
.|.++.++ .++...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 87765533 23666788888888888888888888877653 4556666677777777766666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 422 EEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
..|- ++....++.-.|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5542 44445555556666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.2 Score=42.69 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 216 VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP-NVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 216 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
..+-..+...+.+.|+.++|++.+++|.+..... +......|+.++...+.+.++..++.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344445666668899999999999988653221 233667888999999999999999988
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=6 Score=41.70 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=64.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCccCHHhHH-----HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 157 TQIGATEGAYDVIQKLK--------VKGHSVSIHAWN-----NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
.+.-++++-..+.+.+. ..|++.+..-|. .++.-+...+.+..|+++-+.+...-..- ...|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34444555444444433 245554444443 45666777788888888877765422111 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 224 YALCKECKL--EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 224 ~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.-+.+..+. +++.+..++=...-. -...+|..+.+-....|+.+-|..+++.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 656554322 233333333222212 2344666777777778888888888765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.82 Score=39.87 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=71.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH---GIIPDYVTYT 607 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~ 607 (658)
...+..++..|++.|+.++|.+.|.++.+....+. ...+-.++......|++..+...+.++... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677778888888888888888888877544443 344566777777888888887777766543 2222222211
Q ss_pred HHHH--HHHhCCChHHHHHHHHHHHHC-C-------CCCCHHHHHHHHHHhhcCC
Q 006154 608 TLVT--RFSKNCSPEEVIELHDDMVLS-G-------VSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 608 ~l~~--~~~~~g~~~~A~~~~~~m~~~-g-------~~p~~~~~~~l~~~~~~~g 652 (658)
.... .+...|++.+|-+.|-..... + +.|+.......+.++....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~ 170 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLD 170 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCC
Confidence 1222 244567888877776655432 1 2344444455555554433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=45.66 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=77.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
....-.|+++++.+..+.-.-. +..+..-.+.++..+.+.|..+.|+++-+.-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3344556666655555311100 01123345666666666676666666543221 1233445567766
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
.|.+..++. .+...|..|.....+.|+++-|++.|.+ .. -+..++-.|.-.|+.+.-.++.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k---~~---------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK---AK---------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH---CT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh---hc---------CccccHHHHHHhCCHHHHHHHHH
Confidence 666654332 2555677777777777777777777766 11 24555556666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCD 348 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 348 (658)
.....| -++....++...|+.++..+++.
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 655554 13333444445556655555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1 Score=42.27 Aligned_cols=118 Identities=9% Similarity=-0.061 Sum_probs=85.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCC
Q 006154 156 CTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENV----NTFNLVIYALCKECK 231 (658)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~ 231 (658)
..-.|++.+|-..++++++. .+.|..+++..=.++.-.|+...-...+++++.. ..+|. +.-....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888888888875 4557788888888888888888888888888753 12332 222333334557888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
+++|.+.-++..+.+.. |..+-.+....+--.|++.++.++..+
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 89998888887776432 666777777888888888888888776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.24 Score=44.99 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHH
Q 006154 288 NSVTHNCIINGFC-----KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG----------------SSEEALRL 346 (658)
Q Consensus 288 ~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~ 346 (658)
|..+|...+..+. +.+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 4455555555443 23567777777888888888888888888887764432 22345555
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHHhcC
Q 006154 347 CDEMVKRGLMPNNVVYNSTIHWLFAEG 373 (658)
Q Consensus 347 ~~~~~~~g~~p~~~~~~~ll~~~~~~g 373 (658)
+++|...|+.||..+-..+++++.+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 566666666666555555555555444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.4 Score=35.81 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=63.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH-HHHHH--HHHHHhcCCH
Q 006154 510 CKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV-GYNIL--INFLCKFGCY 584 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~~ 584 (658)
...+..++|+.-|..+.+.|.. .....-.........|+...|...|+++-.....|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666666665554 22223333444555666666666666665533223222 11111 1234456666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
+......+-+...|-+.-...-..|..+-.+.|++.+|..+|+.+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666555555433322222233455555666677777777776666543333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=8.5 Score=41.48 Aligned_cols=403 Identities=11% Similarity=0.046 Sum_probs=204.1
Q ss_pred hHHHHHHhccCCchhhhhhhCCCCC----HHHH-HHHHHh-cCC-ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcC
Q 006154 35 VFRAICVNLRQRKWKILEQMAPSLT----NSLV-NRVVSE-FRK-SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNW 107 (658)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~-~~vl~~-~~~-~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (658)
.+...-..+++.+|.........+. ...+ -..|.. +.. +++. +-.++.+.++.+.....-..-...|.+.
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 3455666778888887655443332 2222 222222 222 2343 3333344444444433444555666666
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006154 108 RRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF 187 (658)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 187 (658)
+++.+...+. ...|.+...-.....+....|+.++|.+....+...|.. .+..++.+
T Consensus 113 ~~w~~~~~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l 169 (644)
T PRK11619 113 EDWRGLLAFS----------------------PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKL 169 (644)
T ss_pred cCHHHHHHhc----------------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHH
Confidence 6666544321 134667777788889999999999898888888877644 67888999
Q ss_pred HHHHHhcCCHh--HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChhh
Q 006154 188 LSHLVKLNEIG--RFWKLYKEMVSCGYVENVNTFNLVIYALCK------------ECKLEEALSLYYRMLKSGIWPNVVC 253 (658)
Q Consensus 188 l~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~ 253 (658)
+..+.+.|... ..++=++.+...| +...-..+...+.. ..+...+..++.. +.|+...
T Consensus 170 ~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~ 241 (644)
T PRK11619 170 FSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFT 241 (644)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhh
Confidence 99888777543 3334344444433 22222222221100 0111122111111 1123221
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 254 FNMIINEAC--QVGDLEFALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 254 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
-..++.++. ...+.+.|..++.... ...+..+. ...+..+.......+...+|...+...... ..+......
T Consensus 242 ~~~~~~~l~Rlar~d~~~A~~~~~~~~--~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~ 317 (644)
T PRK11619 242 RQMAAVAFASVARQDAENARLMIPSLV--RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLER 317 (644)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHH
Confidence 222222222 3456788888888731 22222222 223444444444443355666666655433 224444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGC 409 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (658)
-++.....++++.+...+..|....- -...-..-+..++...|+.++|...|..+... ..-|..+... +.|.
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~--~Lg~ 389 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ--RLGE 389 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--HcCC
Confidence 56666688899988888888755322 13333444666767789999999999887431 1123222211 1221
Q ss_pred hHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 410 VKQA-FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 410 ~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
.-.. ...... ....+. . ..-..-+..+...|....|...+..+... .+......+.....+.|.++.++....
T Consensus 390 ~~~~~~~~~~~-~~~~~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 390 EYPLKIDKAPK-PDSALT-Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCCCCCCc-hhhhhc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 1000 000000 000000 0 01122344556677777777777776664 234444455555556676666665554
Q ss_pred H
Q 006154 489 N 489 (658)
Q Consensus 489 ~ 489 (658)
.
T Consensus 464 ~ 464 (644)
T PRK11619 464 A 464 (644)
T ss_pred h
Confidence 3
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.39 E-value=4.8 Score=38.31 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIE---GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
++..++.+|...+..+ +|..+++.+... ..-.+.++..-+..+.+.++.+++.+.+.+|...-......+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555666776666544 344555555443 222344555556666667778888888888877655333444444443
Q ss_pred H---HHcCCHHHHHHHHHHHHHCCCCCChHHH--HHHHH---HHHhcCC------HHHHHHHHHHHHH-cCCCCCHHHHH
Q 006154 543 Y---FINGKIAEAFAMFSEMRNVGIAVNKVGY--NILIN---FLCKFGC------YQQARELMKVMIL-HGIIPDYVTYT 607 (658)
Q Consensus 543 ~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~---~~~~~g~------~~~A~~~~~~~~~-~g~~p~~~~~~ 607 (658)
+ ... ....|...++.+....+.|....+ ..++. .....++ ++...+++....+ .+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 332 334566666666544344444311 11111 1112111 4444444543322 12233333322
Q ss_pred ---HH----HHHHHhCCChHHHHHHHHHHH
Q 006154 608 ---TL----VTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 608 ---~l----~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++ +..+.+.+++++|.++|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 334677899999999998654
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.059 Score=31.85 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+++..+..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666667777777777777777776664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.2 Score=36.59 Aligned_cols=215 Identities=12% Similarity=0.063 Sum_probs=110.8
Q ss_pred CCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006154 90 FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVI 169 (658)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 169 (658)
+..-...|..-+..+..+++|+.|...+.+..+ +...+...| -...-++.|.-+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~------------------~yEnnrslf-------hAAKayEqaamLa 81 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK------------------GYENNRSLF-------HAAKAYEQAAMLA 81 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------------HHHhcccHH-------HHHHHHHHHHHHH
Confidence 344466788888889999999999888877764 111111111 1223344555555
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 170 QKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC--GYVEN--VNTFNLVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 170 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
+++.+. +--+..++.-...|..+|.++.|-..+++.-+. ++.|+ ...|..-+..+...++...|.++
T Consensus 82 ke~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------- 152 (308)
T KOG1585|consen 82 KELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------- 152 (308)
T ss_pred HHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-------
Confidence 555443 112334555666677777777666666554431 12222 11222222222222222233222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccc-cCCcCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---C
Q 006154 246 GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMS-GDSVLPN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAG---I 320 (658)
Q Consensus 246 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 320 (658)
+...-+.+.+...+++|-..+.+-.... ...--++ -..|...|-.+.-..++..|++.++.-.+.+ -
T Consensus 153 --------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 153 --------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred --------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 2333344555566666555554410000 0000011 1224455556666778888888888755432 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 321 DCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 321 ~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+.+..+...|+.+| ..|+.+++.+++
T Consensus 225 sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 225 SEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 34566777777776 566777665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.98 E-value=6 Score=37.84 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC---
Q 006154 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCK--G----GNIEGAVQVYENMKKVEK---KPNLVIYNSIINGLCKDAS--- 514 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 514 (658)
+...+++.|.+.|+.-+..+|-+....... . .....|..+|+.|++..+ .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445567777777777666665543322222 1 224567778888877643 2445555555544 2222
Q ss_pred -HHHHHHHHHHHHHcCCC--CH-hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 515 -LDAAKSLLQASQRIGLL--DA-ITYNTLINGYFINGK--IAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 515 -~~~a~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
.+.++.+++.+...|.. +. .....++........ ..++.++++.+.+.|+++....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35667777777776665 22 222222222221111 346788888888888888877776655433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.96 E-value=11 Score=40.83 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=118.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMVGDAY-------SYNILIN-YLCKSNNLAAAKQLLSSMIVR----GLIPDIITYGTLI 471 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~li 471 (658)
.....++++|..+..++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776543332221 2333322 334578888888888777654 1223455666677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCH--HHHHHHHHHHHHcCCC-------CHhhHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIY---NSII--NGLCKDASL--DAAKSLLQASQRIGLL-------DAITYN 537 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~g~~--~~a~~~~~~~~~~~~~-------~~~~~~ 537 (658)
.+..-.|++++|..+..+..+....-+...+ ..+. ..+..+|+. .+....+......... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777789999998888766654222333332 2222 224456633 3333333333322111 223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEM----RNVGIAVNKVGY--NILINFLCKFGCYQQARELMKVMILHGIIP----DYVTYT 607 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~ 607 (658)
.+..++.+ .+.+..-...- ......|-...+ ..|+......|+.++|...++++......+ +...-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 33333222222 222222222222 267778888999999999988887543222 322323
Q ss_pred HHHHH--HHhCCChHHHHHHHHH
Q 006154 608 TLVTR--FSKNCSPEEVIELHDD 628 (658)
Q Consensus 608 ~l~~~--~~~~g~~~~A~~~~~~ 628 (658)
..+.. ....|+..++.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33333 2347788777776665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.4 Score=34.41 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=17.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK 193 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 193 (658)
++..+.+.+....+...++.+...+. .++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444444444444444332 233344444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.58 E-value=4 Score=34.55 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=62.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH---HHHHhcCCH
Q 006154 157 TQIGATEGAYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI---YALCKECKL 232 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~g~~ 232 (658)
.+.+..++|+..|..+.+.|...-+. ..-.........|+...|...|+++-.....|-+.--..-+ -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777765542221 12223334556666667777776666543233222111111 123455666
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
++.....+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 66666665554443333333444555555566666666666666
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.5 Score=41.72 Aligned_cols=229 Identities=12% Similarity=0.046 Sum_probs=140.6
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHh
Q 006154 404 LCRNGCVKQAFKLHNQVLEEH--MVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR--GLIPDI---ITYGTLIDGYCK 476 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~---~~~~~li~~~~~ 476 (658)
+....+.++|+..+.+.+.+- ...--.++..+..+.++.|.+++++..--.-+.. ...... ..|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888776651 1123346777788888888888776543222111 011111 223333344444
Q ss_pred cCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHc
Q 006154 477 GGNIEGAVQVYENMKKV-EKKP---NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFIN 546 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 546 (658)
..++.+++.+-+.-... |..| --.....+..++...+.++.+++.|+.+.+.... ...++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333321 2222 1133445677777788899999999987764332 456789999999999
Q ss_pred CCHHHHHHHHHHHHH----CCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRN----VGIAVNKVGY-----NILINFLCKFGCYQQARELMKVMIL----HGIIPD-YVTYTTLVTR 612 (658)
Q Consensus 547 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~ 612 (658)
.|+++|.-+..+..+ .++..-..-| -.|.-++...|+...|.+.-++..+ .|-++- ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777644 2322112222 2455677888998888888877553 342221 2234566777
Q ss_pred HHhCCChHHHHHHHHHHHHC
Q 006154 613 FSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~ 632 (658)
|...|+.+.|..-|+.....
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 88999999999999988753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.1 Score=41.90 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-----VGIAVNKVGYNIL 574 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 574 (658)
.++..++..+...|+.+.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34556666777777777777777777777777777777888888888887777777777644 5666666655544
Q ss_pred HHH
Q 006154 575 INF 577 (658)
Q Consensus 575 ~~~ 577 (658)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.8 Score=34.41 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=80.3
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006154 167 DVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSG 246 (658)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 246 (658)
+.++.+.+.++.|+...+..++..+.+.|++.. +.++++.++-+|.......+-.+ .+....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 445556667788888888888888888887655 44455555555554444333222 23344555555555543
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 247 IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
=...+..++..+...|++-+|+++.+. ... .+......++.+..+.++...-..+++-..++
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~---~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQ---YHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHH---cCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112455677778888888888888876 211 12233445666666666665555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.11 E-value=8.5 Score=36.88 Aligned_cols=203 Identities=9% Similarity=-0.026 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH----HHHCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---Chh
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDE----MVKRG-LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK-HICP---DHF 395 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~ 395 (658)
.+|..+..+.+..|.+++++..--. ..+.. -..-...|..+..++-+..++.+++.+-+.-... |..| ...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455555666666666655432211 11110 0001223444555555555555555544443322 2222 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHM-----VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR----GLIPDIIT 466 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~ 466 (658)
...++..++...+.++++++.|+...+-.. .....++..|...|.+..|+++|.-+..+..+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334456666777778888888887765321 113356778888888888888877666554432 22211122
Q ss_pred HHH-----HHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 467 YGT-----LIDGYCKGGNIEGAVQVYENMKK----VEKKPN-LVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 467 ~~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|.. |.-++...|....|.+.-++..+ .|-.+- ......+.+.|...|+.+.|..-++.+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 222 33355667777777776665543 332221 22334566677788888888777776543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.7 Score=33.94 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 237 SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 316 (658)
++++.+.+.++.|+...+..++..+.+.|++.....++.- ++-+|.......+-.+ .+....+.++--+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-------~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-------HVIPDSKPLACQLLSL--GNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-------cccCCcHHHHHHHHHh--HccChHHHHHHHHHH
Confidence 3344444555666666666666666666665555544433 2333333332222111 112223333333333
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 317 KAGIDCNVRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 317 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
++ =...+..+++.+...|++-+|+++....
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 0012344555566666666666655543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.65 E-value=16 Score=38.85 Aligned_cols=178 Identities=14% Similarity=0.027 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHH----H-HHhcCChHHHHHHHHHHHH-------CCCCCcHhHHHHHHHHHHhc
Q 006154 305 VEFAEEIRYAMIKAGIDCNVRTYATLID----G-YARGGSSEEALRLCDEMVK-------RGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 305 ~~~A~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~ll~~~~~~ 372 (658)
...|.+.++...+.| +......+.. + +....+.+.|..++..+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 445666666666655 2222222222 2 3345667777777777655 33 222344444555443
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hc
Q 006154 373 G-----DVEGALFVLSDMIDKHICPDHFTYSILTKGLCR-NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC----KS 442 (658)
Q Consensus 373 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 442 (658)
. +.+.|..++.+..+.|.+ +....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 445566666666555433 22222111111111 13455666666666666532 22222222221 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006154 443 NNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE 494 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 494 (658)
.+.+.|..++.+..+.|....... ...+..+.. +.++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 355666666666666552111111 112222222 55555555555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.15 E-value=6.4 Score=33.17 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 498 NLVIYNSIINGL---CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 498 ~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+..+.+.|+... ...++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+++.+.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334444555443 34667777777777777776665555555555566777777777777776654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.11 E-value=36 Score=41.62 Aligned_cols=314 Identities=11% Similarity=-0.003 Sum_probs=164.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRM----LKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCII 296 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 296 (658)
.+..+-.+++.+.+|.-.+++- ++. .....-|..+...|+..+++|....+... ... .| ....-|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~---r~a---~~---sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSAR---RFA---DP---SLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHH---hhc---Cc---cHHHHH
Confidence 4555677888999999999883 222 11223444555589999999988877763 111 12 233445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHH-HHHHHhcCCH
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNST-IHWLFAEGDV 375 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~ 375 (658)
......|++..|...|+.+...+ ++...+++-++......|.++......+-.... ..+....++.+ +.+-.+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 56678899999999999999875 555778888888777888888877766555443 22233334332 3444667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHH--HHHHHHhcCChH--HHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhc
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSI--LTKGLCRNGCVK--QAFKLHNQVLEEHMVG---------DAYSYNILINYLCKS 442 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 442 (658)
+....... .. +..+|.. ++..+.+..+-+ .-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77666554 11 1112221 233333222211 1112232222221111 112333333322211
Q ss_pred CCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHH
Q 006154 443 NNLAAAKQLLSSMIVRGLIPD------IITYGTLIDGYCKGGNIEGAVQVYEN-MKKVEKKP-----NLVIYNSIINGLC 510 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~-----~~~~~~~l~~~~~ 510 (658)
.-- ....... +..++ ...|..-+..-....+..+-+-.+++ +......| -..+|....+...
T Consensus 1608 el~----~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1608 ELE----NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred HHH----HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 110 0111110 11111 11122122111011111111111111 11111111 2346777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+.|.++.|...+-.+.+.. -+.++--.+......|+...|+.++++..+.
T Consensus 1682 ~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7888888887776666665 4556666677788888888888888888754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.85 E-value=7 Score=32.96 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=10.0
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006154 510 CKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~ 529 (658)
...|++.+|..+|+.+....
T Consensus 55 i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHhCCHHHHHHHHHHHhccC
Confidence 34555555555555544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.9 Score=33.95 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIIN 507 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 507 (658)
+.+||.+.-.+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+-+...-+.... |-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 45677777777778888888888877777543322222332232 22457777777766666554322 11122222221
Q ss_pred HHHhcCCHHHHHHH-HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSL-LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-------KVGYNILINFLC 579 (658)
Q Consensus 508 ~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~ 579 (658)
..-++.+|..- .++.... +..-|...+-.|.- |+.. ...+++++... -..+ ..||-.|..-+.
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~---d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS---DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc---cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHh
Confidence 22344555433 3333333 33334333322221 2211 11223333321 1111 346778888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006154 580 KFGCYQQARELMKVMILH 597 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~ 597 (658)
..|+.++|..+|+-.+..
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999888865
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.45 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=17 Score=36.81 Aligned_cols=219 Identities=12% Similarity=0.050 Sum_probs=144.5
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHH
Q 006154 107 WRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNN 186 (658)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 186 (658)
.+-.+....++++.......+-...+-+-+-.+...+.+.....+++..+..+-...-...+..+|.+.| -+-..+..
T Consensus 27 ~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~e 104 (711)
T COG1747 27 QSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLE 104 (711)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3444444555555544433333333433333444566777888899999999999999999999999875 36788899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C---hhhHHHHHHHH
Q 006154 187 FLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP--N---VVCFNMIINEA 261 (658)
Q Consensus 187 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~ 261 (658)
++..|... ..+.-..+++++.+..+. |+..-..|...| ..++.+.+..+|.++...=++. + ...|.-++...
T Consensus 105 l~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i 181 (711)
T COG1747 105 LLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI 181 (711)
T ss_pred HHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc
Confidence 99999888 667888999999987542 444444455555 4488899999998877542210 1 11344333311
Q ss_pred HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 262 CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA 335 (658)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 335 (658)
-.+.+..+.+...+ -...|...-.+.+..+-.-|....++++|.+++..+.+.+ ..|+..-..++..+.
T Consensus 182 --~dD~D~fl~l~~ki--qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 182 --GDDKDFFLRLQKKI--QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred --cccHHHHHHHHHHH--HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 35677777777764 2223333345566666677888899999999999888876 556666666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.7 Score=36.02 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCccCHHhHHHHHHHHHhcCCHhHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK---GHSVSIHAWNNFLSHLVKLNEIGRFW 201 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~ 201 (658)
++.....|+..|. ..+.+++.+++....+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444443 56677777777666652 22456666666666666666666653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.44 E-value=4.6 Score=35.22 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH--
Q 006154 183 AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN--VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII-- 258 (658)
Q Consensus 183 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-- 258 (658)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+|+.....|++..+.....+....--.+.......-+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445555556666666666666666555433222 3344555555566666666666655544321111111111111
Q ss_pred -H--HHHhcCCHHHHHHHHHH
Q 006154 259 -N--EACQVGDLEFALKLFRK 276 (658)
Q Consensus 259 -~--~~~~~g~~~~A~~~~~~ 276 (658)
. .+...+++..|-+.|-+
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 1 12235677777777765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.56 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|..|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999999999999998543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.89 E-value=25 Score=37.44 Aligned_cols=274 Identities=16% Similarity=0.025 Sum_probs=166.0
Q ss_pred ChHHHHHHHHHHHHCCCCCcHhHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHh
Q 006154 339 SSEEALRLCDEMVKRGLMPNNVVYNSTI----HW-LFAEGDVEGALFVLSDMID-------KHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 406 (658)
....|.++++...+.|. ...-..+. .+ +....+.+.|+.+++.+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35677888888777763 22222222 22 4466789999999998877 44 34456667777776
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 006154 407 NG-----CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK-SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC----K 476 (658)
Q Consensus 407 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~ 476 (658)
.. +.+.|..++....+.|.+ +.......+..... ..+...|.++|......|..+ .+-.+...|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCc
Confidence 43 667799999999888744 44433333222222 246789999999999987532 2222222221 2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH----HHH----cCC
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING----YFI----NGK 548 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~g~ 548 (658)
..+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.+.....+-...+.. ... ..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 457889999999999987 3332333333344444 778888777777777766533222222211 111 225
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hCCChH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFS----KNCSPE 620 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~ 620 (658)
.+.+...+.+....| +......+.+.|... .+++.|...+......+ ....|+ +...+- -.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hH
Confidence 667777777777765 555556666665544 35888888888888765 233332 332222 123 67
Q ss_pred HHHHHHHHHHHC
Q 006154 621 EVIELHDDMVLS 632 (658)
Q Consensus 621 ~A~~~~~~m~~~ 632 (658)
.|.+++++..+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 888888888764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.44 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAY 166 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~ 166 (658)
..|.++.+|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56788899999999999999998886
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.89 E-value=31 Score=36.97 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=96.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSV---SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
-++.+.+.+.+++|+...+..... .+ -...+..++..+...|++++|-...-.|.. -+..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 466778888899998887766543 22 345677888888888899888888888875 355666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
.++......+ +.......+...|..++..+.. .+...-.++..+ .+++...-...+++
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~--------Wp~~Lys~l~iisa---------- 493 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE--------WPGHLYSVLTIISA---------- 493 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh--------CChhhhhhhHHHhh----------
Confidence 6665443332 2222222355577777777766 444444443333 22222211111111
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK 352 (658)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (658)
+-.+..+. ..+...-..|+..|...+++.+|++++-..+.
T Consensus 494 --~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 494 --TEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --cchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 01111111 11222233377778888888888887766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.98 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..++.++...|++++|+..++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.1 Score=26.25 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPD 637 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 637 (658)
.+|..+...|...|++++|+..+++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678889999999999999999999998 5564
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.92 E-value=5.4 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
|..-|+++....|....++..+..+|..
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3333444444444455555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.78 E-value=15 Score=32.00 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY-----NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
+...+...|++++|...++..... |....+ -.|.......|.+++|+.+++.....+.. ......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 345667778888888888777653 222222 23455667778888888887776654321 22233445567
Q ss_pred HhCCChHHHHHHHHHHHHCC
Q 006154 614 SKNCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~~g 633 (658)
...|+-++|+.-|++.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 78888888888888888764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.53 E-value=16 Score=31.90 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY--NSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLI 540 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 540 (658)
.|..++.... .+.+ +.....+++..........++ ..+...+...+++++|...++.......+ ...+-..|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444332 2333 444555555554222122222 23345567788888888888877654333 233444567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 541 NGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 541 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
......|.+++|+.+++...+.+.. ......-.+.+...|+-++|+.-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 7788889999999988877764322 2224455678889999999999999988864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.42 E-value=5.4 Score=40.88 Aligned_cols=148 Identities=16% Similarity=0.062 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEA 343 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 343 (658)
.|+++.|..++.. +. ....+.++..+.+.|..++|+++- +|... -.....+.|+++.|
T Consensus 599 rrd~~~a~~vLp~---I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 599 RRDLEVADGVLPT---IP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hcccccccccccc---Cc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence 4566666555444 11 223445566666666666665432 22211 12334566777777
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
.++..+.. +..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77665532 556677888888888888888887776654 344555566666666555555555555
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 424 HMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
|.. |....+|...|+++++.+++.+
T Consensus 722 g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 432 3334455667777777776654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.39 E-value=4.1 Score=30.68 Aligned_cols=61 Identities=5% Similarity=-0.049 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
.-+..+-++.+...++.|++....+.+++|.+.+++..|+++++..+.+ ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3355555566666667777777777777777777777777777766643 122334454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.35 E-value=24 Score=33.77 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCC--
Q 006154 481 EGAVQVYENMKKVEKKPNLVIYNSIINGLCK--D----ASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGK-- 548 (658)
Q Consensus 481 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~-- 548 (658)
++.+.+++.+.+.|+.-+..+|.+..-.... . .....|..+++.|++..+. +-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556788899999998777776554333332 2 2356899999999998875 23334444322 3333
Q ss_pred --HHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006154 549 --IAEAFAMFSEMRNVGIAVNKV-GYNILINFLCKFG---CYQQARELMKVMILHGIIPDYVTYTTLVTR 612 (658)
Q Consensus 549 --~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 612 (658)
.+.++.+|+.+.+.|+..+.. -+.+-+-++.... ....+.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356778888888877765533 2222222222211 155788999999999999888877765543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.31 E-value=40 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcC
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGIDC---NVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEG 373 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g 373 (658)
+-+.+.+.+++|.++.+..... .| -......+|..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4445555666665554443322 22 2334555566666666666666666555543 4444444444444443
Q ss_pred C
Q 006154 374 D 374 (658)
Q Consensus 374 ~ 374 (658)
+
T Consensus 438 ~ 438 (846)
T KOG2066|consen 438 Q 438 (846)
T ss_pred c
Confidence 3
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.28 E-value=18 Score=32.14 Aligned_cols=167 Identities=14% Similarity=0.000 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-cCHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV-ENVNTF 219 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~ 219 (658)
..|.-+.+|+-|.--+...|+++.|.+.|+...+.++.-+-...|.-|.. .-.|++.-|.+-+.+.-+.+.. |-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 45667889999999999999999999999999988665444444444433 3467888888777766655321 212223
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHhcccccCCc---CCChhhHHH
Q 006154 220 NLVIYALCKECKLEEALSLY-YRMLKSGIWPNVVCFNMIINEAC-QVGDLEFALKLFRKMGVMSGDSV---LPNSVTHNC 294 (658)
Q Consensus 220 ~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~ 294 (658)
--+. -+.-++.+|..-+ ++..+. |..-|...|..+. ..=..+.+.+-... ....+- ..-+.||--
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a---~a~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKA---DATDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHh---hccchHHHHHHHHHHHHH
Confidence 2222 2334566665443 333332 4444444443332 11122222222222 111000 001345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
+.+-+...|+.++|..+|+-....
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 666666677777777766666543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.20 E-value=14 Score=30.72 Aligned_cols=52 Identities=15% Similarity=-0.037 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++++++..++..+.-..|..+..-..-...+...|++++|..+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6677777777777777666654444444555667777777777777776643
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.13 E-value=43 Score=36.29 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc--CHHhHHHHHHHHH-hcCCHhHHHHHHHHHHhCCCCcCH----
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKV-KGHSV--SIHAWNNFLSHLV-KLNEIGRFWKLYKEMVSCGYVENV---- 216 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~g~~~~~---- 216 (658)
...-|..||.. |++.++.+.+ ..++| ...++..+...+. ...+++.|...+++....--.++.
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 33455555544 5666666663 22333 2345556666666 567889998888877643322221
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhcccccCCcCCChh
Q 006154 217 -NTFNLVIYALCKECKLEEALSLYYRMLKSG----IWPNVVCFNMI-INEACQVGDLEFALKLFRKMGVMSGDSVLPNSV 290 (658)
Q Consensus 217 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 290 (658)
.....++..+.+.+... |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+.........|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 12334556666665555 888887766531 11222233333 222333378888888888853333222333444
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHcC---------CCCChhhHHHHHHHHH--hcCChHHHHHHHHHHH
Q 006154 291 THNCIINGFC--KLGRVEFAEEIRYAMIKAG---------IDCNVRTYATLIDGYA--RGGSSEEALRLCDEMV 351 (658)
Q Consensus 291 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 351 (658)
.+..++.+.. +.+..+++.+.++++.... ..|...++..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445554443 4455666766666663321 1345566666666554 4677666666655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=88.00 E-value=37 Score=36.30 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
+..|. .+..+.-.|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55555 788888889999999888543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.98 E-value=6.7 Score=36.77 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 006154 495 KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY 571 (658)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 571 (658)
...+..+...++..-....+++.+...+-++...... ...+-...++.+ -.-++++++.++..-++.|+-||.+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3334444455555444556666666665555433211 111111122222 223667777777777788888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 572 NILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 572 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+++.+.+.+++.+|.++.-.|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888887777666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.4 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.74 E-value=7.7 Score=33.81 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|..-..+..+.++....+...-..+|-+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 34556666666666666665421111 12233333444555555566555555555555544444444555555555
Q ss_pred HHHHHHHHHHHHHC
Q 006154 549 IAEAFAMFSEMRNV 562 (658)
Q Consensus 549 ~~~A~~~~~~~~~~ 562 (658)
+++|+.-|+++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.4 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..|..+...+...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777888888888888887776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.51 E-value=8.4 Score=29.43 Aligned_cols=47 Identities=4% Similarity=-0.047 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+-++.+...++.|++....+.+++|.+.+++..|+++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444445555566666666666666666666666666655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.5 Score=38.95 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 489 (658)
|.++|.+++|+..|...+.. .| +.+++..-..+|.+...+..|..-...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 55555555555555544432 22 444444444455555555444443333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.2 Score=33.38 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=36.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC
Q 006154 510 CKDASLDAAKSLLQASQRIGLL-----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGC 583 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 583 (658)
.+.|++++|..-+..+....+. ....|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 3444455555444444444433 12233333444444455555544444444432 21 1112222334444444
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|++=++++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=50 Score=35.82 Aligned_cols=412 Identities=12% Similarity=0.054 Sum_probs=190.8
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 208 (658)
.+-+...+..+++.|.....-..-+..+.+.+++....+.+. . .+.+...-.....+....|+.++|....+.+=
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334445555555555555555555556666666665555221 1 23455555666777777888777777777666
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHH-HHHHHhcccc--c
Q 006154 209 SCGYVENVNTFNLVIYALCKECKLEEA--LSLYYRMLKSGIWPNVVCFNMIINEACQV-GDLEFAL-KLFRKMGVMS--G 282 (658)
Q Consensus 209 ~~g~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~-~~~~~~~~~~--~ 282 (658)
..|. .....++.++..+.+.|.+... .+-++.+...| +...-..+...+... ...-++. .+...-.... .
T Consensus 157 ~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 157 LTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA 232 (644)
T ss_pred ccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh
Confidence 5552 3455677777777766655432 22233333332 222222233222100 0000011 1111000000 0
Q ss_pred CCcCCChhhHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 283 DSVLPNSVTHNCIINGFC--KLGRVEFAEEIRYAMIKAG-IDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 283 ~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
..++|+...-..++.++. ...+.+.|..++....... +.+. ..+...+.......+...+|...++...... .
T Consensus 233 ~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~ 310 (644)
T PRK11619 233 RTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--Q 310 (644)
T ss_pred hccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--C
Confidence 001122211111111221 2344566777777654332 2111 1223333333333332555666665543332 2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
|.......+......++++.+...+..|-... .-...-.--+.+++...|+.++|...|+.+... ...|..|..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH
Confidence 33334444445557777777777777764422 223334445566666677777777777776431 112222221
Q ss_pred HHHhcCCH---HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 438 YLCKSNNL---AA--AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 438 ~~~~~~~~---~~--A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
.- .|.. .. ....-.. +..+. -..-+..+...|....|...+..+... .+......+...-.+.
T Consensus 385 ~~--Lg~~~~~~~~~~~~~~~~-----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~ 452 (644)
T PRK11619 385 QR--LGEEYPLKIDKAPKPDSA-----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQ 452 (644)
T ss_pred HH--cCCCCCCCCCCCCchhhh-----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Confidence 11 1111 00 0000000 00000 112234556778888888888887764 2444555555555677
Q ss_pred CCHHHHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 006154 513 ASLDAAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV 569 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 569 (658)
|.++.+............ .-+..|...+..+.+.-.++.++-.----.+.++.|+..
T Consensus 453 g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 453 QWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred CCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 777777665543222110 022345555555555555555443333334455555543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.84 E-value=27 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLM 121 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 121 (658)
.+|++.|-++..+.|-+. +-..++..+....+..+|...+...+
T Consensus 150 ~KA~ELFayLv~hkgk~v---~~~~~ie~lwpe~D~kka~s~lhTtv 193 (361)
T COG3947 150 RKALELFAYLVEHKGKEV---TSWEAIEALWPEKDEKKASSLLHTTV 193 (361)
T ss_pred hHHHHHHHHHHHhcCCcc---cHhHHHHHHccccchhhHHHHHHHHH
Confidence 678999998887665332 34566777777777777777666544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.21 E-value=13 Score=28.42 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+.......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455666666677778888888888888888888888888888777665443335555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=32 Score=32.78 Aligned_cols=137 Identities=13% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING-KIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
+..+-...+.++.+.++. ++...+-.+.... +..+-...+.++...+ +...+...+..+.. .++...-...+.
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKDP--NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 445555556666555553 3444444443321 3334344444444332 13355555555554 345555666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777776 35555555555432 2 234566677777774 577777777753 456666666666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=9.3 Score=35.88 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=49.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNS 504 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 504 (658)
+..+...++..-....+++.++..+-++.... ..|+... .+.+.. +-.-++++++.++..=++.|+-||..+.+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444444444444555555555555544331 0111111 111221 223455566666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 505 IINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
+++.+.+.+++.+|..+...+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666555554443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.97 E-value=5.3 Score=37.78 Aligned_cols=93 Identities=20% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
...|.+.|.+++|+..|...... .| +++++..-..+|.+..++..|+.-.+.+...+..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55677888888888888777664 33 7777777777888888888777776666665444455555555555566666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 006154 550 AEAFAMFSEMRNVGIAVN 567 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~ 567 (658)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 677666666666 3455
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.77 E-value=40 Score=33.56 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV 493 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 493 (658)
..|+.-|...|+..+|...++++--- +-.....+.+++.+.-+.|+-...+.+++..-..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34555566666666666666554321 1123455556666666666655555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=55 Score=35.06 Aligned_cols=101 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred hCCCCcCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHhcccc
Q 006154 209 SCGYVENVNTFNL-----VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD--LEFALKLFRKMGVMS 281 (658)
Q Consensus 209 ~~g~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~ 281 (658)
..|++.+..-|.. +++-+...+.+..|+++-.-+-..-.. +...|..+..-+.+..+ -+++++-+++ ..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~---kl 500 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE---KL 500 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHH---Hh
Confidence 4566666555544 456677778888888887766432111 14455555555555422 2233333333 22
Q ss_pred cCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 282 GDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 282 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
.... -...+|..+.......|+.+-|..+++.
T Consensus 501 s~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 501 SAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred cccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2222 3456788888888888999888887654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.38 E-value=46 Score=33.89 Aligned_cols=92 Identities=15% Similarity=0.064 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
....+++..+..+-...-...+..+|+.-|- +-..|..++.+|... ..+.-..+|+++.+..+. |.+.-..|...|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 3344444444444444444444444444431 334444555555444 334444455544443321 233333333333
Q ss_pred HhcCChHHHHHHHHHHH
Q 006154 475 CKGGNIEGAVQVYENMK 491 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~ 491 (658)
-+ ++.+.+..+|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 33 44445555554444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.11 E-value=2.8 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555566666655555544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.08 E-value=7.3 Score=34.50 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+..+.+.+.+.++....+.-.+..|.+...-..++..||-.|++++|..-++-.-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444555666667777776666666666666666677777777777777666665544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.55 E-value=3 Score=25.61 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888999999999999999888764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.46 E-value=13 Score=32.73 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
..+.+++..++.+...+...+-.+|+..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444433233333334444444444444444444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.31 E-value=8.4 Score=34.14 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 219 FNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 219 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
.+..++.+.+.+.+.+|+...++-++..+ -|..+-..++..+|-.|++++|..-++....+... ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~-~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ-DTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHH
Confidence 34455667777778888877777666532 25556667777788888888887777663222221 22334555555543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.08 E-value=83 Score=35.07 Aligned_cols=116 Identities=9% Similarity=0.136 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC---CccCHHhHHHHHHHHHhcCCH--hHHHHHHHHHHhCCCCcCHHHHHH-
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKG---HSVSIHAWNNFLSHLVKLNEI--GRFWKLYKEMVSCGYVENVNTFNL- 221 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~- 221 (658)
-|..|+..|...|+.++|++++.+..... -..-...+..++..+.+.+.. +-+++.-+.............+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788999999999999999999887732 111223444566666666655 666666666665431111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 222 -----------VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 222 -----------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
.+-.++.....+-++.+++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 223455666777888888888766555566777777777765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.18 E-value=22 Score=36.75 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
-+.+++.+.++|-.++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 445666666677666666543 222211 223345677777776665542 55667778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.+++..|.+.|.+... |..|+-.+...|+.+.-..+-....+.|. .|...-+|...|+++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 679 AGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred cccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 8888888877775443 45566666667776655555555555542 122334566778888777776
Q ss_pred HHH
Q 006154 592 KVM 594 (658)
Q Consensus 592 ~~~ 594 (658)
..-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.79 E-value=63 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=29.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVE 376 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 376 (658)
..+.++...+++..+...|.....+.+|.....|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 46677888888888877776666666777777777776543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.73 E-value=1.9 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456667777777777776664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.58 E-value=17 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
++|...|++..+ ..|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 444445555544 245555555444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.20 E-value=83 Score=33.76 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 283 DSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 283 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
....|| |..+.++|.-..+.+.+.++++++.+.
T Consensus 207 ~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 207 KLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred cCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 334455 455677888888999999999888874
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.87 E-value=61 Score=32.02 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
...+|..++..+.+.|.++.|...+..+...+... .+...-.-...+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777777788887777777776643111 222333334555667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.56 E-value=3.7 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 574 LINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666655555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.29 E-value=52 Score=30.87 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+.....|..+|.+.+|.++-+..+..+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455556666666666666665543 3445555566666666666555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.0 bits (216), Expect = 4e-18
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 1/196 (0%)
Query: 231 KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSV 290
L+ + + ++ + L A L L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEAL-RLCDE 349
+N ++ G+ + G + + + + AG+ ++ +YA + R + R ++
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 350 MVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGC 409
M + GL + + ++ V P S L + +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 410 VKQAFKLHNQVLEEHM 425
KLH +
Sbjct: 287 RVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 4e-13
Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 36/233 (15%)
Query: 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL---SSMIVRGLIPDIIT 466
+ Q + + G ++ L A LL + + +
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQ 526
Y ++ G+ + G + V V +K P+L+ Y + + + +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT-------- 219
Query: 527 RIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ 586
+M G+ + + +L++ + +
Sbjct: 220 -------------------------IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 587 ARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQ 639
++ L +P V + L+ +LH + + Q
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 4e-11
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 5/170 (2%)
Query: 483 AVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLIN 541
A + + ++ + P ++ SLD ++ + L
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 542 GYFINGKIAEAFAMFSEMRN---VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598
+ ++ A + + YN ++ + G +++ ++ ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 599 IIPDYVTYTTLVTRFSKNCSPEEVIE-LHDDMVLSGVSPDNQTYNAIISP 647
+ PD ++Y + + IE + M G+ ++S
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 8e-09
Identities = 18/226 (7%), Positives = 62/226 (27%), Gaps = 42/226 (18%)
Query: 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKL---YKEM 207
L++ + + + S F + +++ L +
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 208 VSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDL 267
+ ++ +N V+ ++ +E + + + + +G+ P++
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL---------------- 200
Query: 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGR-VEFAEEIRYAMIKAGIDCNVRT 326
+++ + + + E M + G+
Sbjct: 201 ----------------------LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372
A L+ R + ++ +P V + + ++A+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 101/688 (14%), Positives = 185/688 (26%), Gaps = 266/688 (38%)
Query: 1 MFSAFCNCLYKSNSPLSRAFHVGKQFANPSTEDI-VFRAICVNLRQRKWKILEQMAPSLT 59
M+ + LY N ++ ++V + R + LR K +++ + S
Sbjct: 111 MYIEQRDRLYNDNQVFAK-YNV------SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 60 NSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGN 119
+ V ++ K+ + + W+ + N
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF-WLN-------------------------------LKN 191
Query: 120 LMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAY-DVIQKLKVKGHS 178
S +V LE L+ L QI + D +K++
Sbjct: 192 CNSPETV--LEMLQKL--------------------LYQIDPNWTSRSDHSSNIKLR--- 226
Query: 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEM------VSCGYVENVNTFNLVIYALCKECK- 231
IH+ L L+K K Y+ V + N FNL CK
Sbjct: 227 --IHSIQAELRRLLK-------SKPYENCLLVLLNVQ--NAKAWNAFNL-------SCKI 268
Query: 232 --------LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK-MGVMSG 282
+ + LS ++ ++ + L K +
Sbjct: 269 LLTTRFKQVTDFLSAATT------------THISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 283 DSVLPNSVTHNCIINGF-CKLGRVEFAEEIR--------YAMIKAGIDCNVRTYATLIDG 333
D LP V N + AE IR + + N T+I+
Sbjct: 317 D--LPREV---LTTNPRRLSI----IAESIRDGLATWDNWKHV------NCDKLTTIIE- 360
Query: 334 YARGGSSEEALRLCDEMVKR----GLMPNNV-----VYNSTIHWL-FAEGDVEGAL--FV 381
SS L E K + P + + ++ W + DV +
Sbjct: 361 -----SSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVMVVVNKLH 412
Query: 382 LSDMIDKHICPDHFTYSI-----LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILI 436
+++K P T SI K N + LH +++ YNI
Sbjct: 413 KYSLVEKQ--PKESTISIPSIYLELKVKLEN-----EYALHRSIVD--------HYNIPK 457
Query: 437 NYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK 496
+ LIP + D Y
Sbjct: 458 TFDSD-----------------DLIPPYL------DQY---------------------- 472
Query: 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556
Y+ I + L ++ +R+ L + ++ F+ KI
Sbjct: 473 ----FYSHIGHHLKN----------IEHPERMTLFRMV----FLDFRFLEQKI------- 507
Query: 557 SEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT---RF 613
R+ A N G ++N L + Y+ + I + Y LV F
Sbjct: 508 ---RHDSTAWNASGS--ILNTLQQLKFYKP----------Y-ICDNDPKYERLVNAILDF 551
Query: 614 SKNCSPEEVIELHDDMVLSGVSPDNQTY 641
+ + D++ + +++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAI 579
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.77 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.55 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.45 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.21 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.65 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.26 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.9 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.19 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.65 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.53 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.42 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.87 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.75 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.32 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.1 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.89 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.5 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.63 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.18 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.34 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.36 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.64 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.21 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.14 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=350.45 Aligned_cols=489 Identities=12% Similarity=0.044 Sum_probs=405.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778888999999999999999999988854 567788888889999999999999999887653 57888889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 224 YALCKECKLEEALSLYYRMLKS---------------GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++ ...+ +.+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~-p~~ 233 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA---LMVD-AKC 233 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHHC-TTC
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhC-chh
Confidence 9999999999999988853322 12335778888888888888888888888884 3321 123
Q ss_pred hhhHHHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAE--EI-RYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNST 365 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 365 (658)
...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 445555554443332222211 11 444444443445566777788899999999999999999876 4789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (658)
+.+|.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+..+ .+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccH
Confidence 99999999999999999999986543 788999999999999999999999999997654 3788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998853 2468899999999999999999999999999874 347889999999999999999999999999
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
.+..+.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 9998889999999999999999999999999999875 56777 7899999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhh
Q 006154 600 IPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPD-NQTYNAIISPLL 649 (658)
Q Consensus 600 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 649 (658)
+.+..+|..++.+|.+.|++++|.+.++++.+. .|+ ...+..+...|.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 447899999999999999999999999999984 554 466666665553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=338.22 Aligned_cols=488 Identities=12% Similarity=0.007 Sum_probs=410.1
Q ss_pred CCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
++...+..++..+.+.|++++|..++++++.. .|+..++..++.+|.+.|++++|..+|++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------------------TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------------------CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 46778999999999999999999999998751 23668889999999999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC---------------CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC---------------GYVENVNTFNLVIYALCKECKLEEAL 236 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~ 236 (658)
+... .+++.+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8654 678999999999999999999999999964322 23446889999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH---HHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 237 SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKL---FRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
++|++|.+.+.. +...+..+...+...++.+.+... +.. +...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 221 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 221 ECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYST---YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHH---HHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcc---cccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999986432 445566665544433332222211 333 3333444556677888899999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD 393 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (658)
++.+. +++..+++.++..|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99866 689999999999999999999999999999987643 77889999999999999999999999998653 447
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
..++..++..|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 889999999999999999999999999887544 788999999999999999999999999998643 478899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-HhhHHHHHHHHHHc
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI------GLLD-AITYNTLINGYFIN 546 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~ 546 (658)
|.+.|++++|.++|+++.+... .+..+|..++..+.+.|++++|.++|+++.+. .+.+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999998643 47889999999999999999999999999876 2222 78999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999998864 4578999999999999999999999999999863 23456666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=241.14 Aligned_cols=380 Identities=16% Similarity=0.050 Sum_probs=221.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
+...+.+.|++++|.+.++.+.+..+ .+...+..+...+...|++++|...++..++.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34566777888888888877776532 245566666677777777777777777777653 4566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCC-ChhhHHHHHHHHHhcCChHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLP-NSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
+++|.+.|+++.+..+ .+..+|..+..++...|++++|.+.|+++ .. ..| +...+..+...+...|++++|.+
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSA---LQ--YNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHH---HH--HCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHH---HH--hCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 7777777777766421 13446777777777777777777777763 22 123 24455556666666677777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 390 (658)
.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...|..+...+...|++++|...+++......
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777766653 444566666666666666666666666666655321 344555555566666666666666655554322
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
.+..++..+...+.+.|++++|.+.++++.+.++. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus 235 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 13445555555555555555555555555554332 34445555555555555555555555555432 2344455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..|.+..+|..+...+..
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 555555555555555555554431 22344444455555555555555555555554444444444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=239.57 Aligned_cols=380 Identities=13% Similarity=0.055 Sum_probs=209.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
..+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++.. ... .+.+..+|..+...+.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a---~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLA---IKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH---Hhc-CCCchHHHHHHHHHHHHCC
Confidence 3344555555555555555544211 2334444444445555555555555442 111 1223444555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 383 (658)
++++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. |+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------------------------- 133 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PD------------------------- 133 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TT-------------------------
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------------------
Confidence 5555555555544432 2233344444444444555555554444444432 21
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006154 384 DMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD 463 (658)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 463 (658)
+...+..+...+...|++++|.+.++++.+..+. +..+|..+...+...|++++|...|+++.+.+. .+
T Consensus 134 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 202 (388)
T 1w3b_A 134 ---------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NF 202 (388)
T ss_dssp ---------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred ---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Confidence 2233344444445555555555555555554322 445555555555566666666666655555422 23
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|+..+++..+..+ .+..++..+...+...|++++|...++++.+..+.++.+|..++..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45555566666666666666666666665422 24556666666666666667776666666666666666677777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+.|++++|...++++.+.. +.+..++..++..+.+.|++++|++.++++.+. .+.+..++..+...+.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777766642 445666667777777777777777777776654 2334556666777777777777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 006154 624 ELHDDMVLSGVSP-DNQTYNAIISPLLGEK 652 (658)
Q Consensus 624 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 652 (658)
+.++++.+ ..| +...|..+...+...|
T Consensus 360 ~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 360 MHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 77777765 334 3355555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=260.69 Aligned_cols=204 Identities=16% Similarity=0.226 Sum_probs=135.9
Q ss_pred HHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HHH
Q 006154 165 AYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK---------LEE 234 (658)
Q Consensus 165 A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 234 (658)
+..+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 444555565555555443 4666777777777777777777777777777777777777777765543 466
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++ |...|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~---M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQ---MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777 56667777777777777777777777777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh
Q 006154 315 MIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA 371 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 371 (658)
|.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=258.96 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------H
Q 006154 198 GRFWKLYKEMVSCGYVENV-NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD---------L 267 (658)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~ 267 (658)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777766665443 45788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+.|.++|++ |...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|
T Consensus 87 ~~A~~lf~~---M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 87 SRGFDIFKQ---MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 788888888 77788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006154 348 DEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN 407 (658)
Q Consensus 348 ~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (658)
++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..++..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888888887753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-24 Score=225.19 Aligned_cols=439 Identities=8% Similarity=-0.050 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYA 225 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (658)
...+..+...+.+.|++++|...|+++.+.+ |++.+|..+..++.+.|++++|...++++++.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3567788899999999999999999999975 689999999999999999999999999999875 4567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCCh
Q 006154 226 LCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 305 (658)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+.. +...+..|+...+..-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGD---IDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999998753 3455555555555544434433333322 11111111111111111001111111
Q ss_pred HHHHHHHHHHHHcCC---------CCChhhHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------cHh
Q 006154 306 EFAEEIRYAMIKAGI---------DCNVRTYATLIDGYAR---GGSSEEALRLCDEMVK-----RGLMP--------NNV 360 (658)
Q Consensus 306 ~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~~p--------~~~ 360 (658)
.....+...+..... +.+...+......+.. .|++++|...++++.+ ....| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111110 1123344444444443 6777777777777766 31111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
.+..+...+...|++++|...++++.+.... ...+..+...+...|++++|.+.++++.+..+. +..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 5666667777777777777777777665433 666666777777777777777777777665433 5556666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKS 520 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 520 (658)
..|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777766532 245566666666777777777777777766642 2245566667777777777777777
Q ss_pred HHHHHHHcCCCC------HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 521 LLQASQRIGLLD------AITYNTLINGYFI---NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 521 ~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.++++....+.+ ...+..++..+.. .|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777766654443 2266777777777 777777777777776642 334566667777777777777777777
Q ss_pred HHHHHc
Q 006154 592 KVMILH 597 (658)
Q Consensus 592 ~~~~~~ 597 (658)
+++.+.
T Consensus 473 ~~a~~~ 478 (514)
T 2gw1_A 473 EESADL 478 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-24 Score=225.20 Aligned_cols=446 Identities=8% Similarity=-0.061 Sum_probs=333.2
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 181 IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINE 260 (658)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 260 (658)
...+......+.+.|++++|+..|+++++.+ |+..++..+..++.+.|++++|.+.++++.+.++ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567777888999999999999999999875 7899999999999999999999999999988743 256788999999
Q ss_pred HHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 261 ACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 261 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
+...|++++|...|+++ ...+ +++......++..+........+.+.+..+...+..|+......-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVL---SLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHH---HHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHH---HhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999994 3332 2344455555555555444444444443333322222222111111111111111
Q ss_pred HHHHHHHHHHHHCCC---------CCcHhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCChh
Q 006154 341 EEALRLCDEMVKRGL---------MPNNVVYNSTIHWLFA---EGDVEGALFVLSDMID-----KHI--------CPDHF 395 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~---------~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~ 395 (658)
.....+...+..... ..+...+......+.. .|++++|...++++.+ ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1124445555555554 8999999999999988 311 22356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
++..+...+...|++++|...++++.+..+. ...+..+...+...|++++|...++++..... .+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 7788889999999999999999999988655 88899999999999999999999999988643 36778888999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+..++..++..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999987443 6778889999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHCCCC-CC----hHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 556 FSEMRNVGIA-VN----KVGYNILINFLCK---FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 556 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++.+.... ++ ...+..++..+.. .|++++|.+.++++.... +.+..++..+...+.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999764211 11 3388999999999 999999999999999863 3467788899999999999999999999
Q ss_pred HHHHCCCCCCHHH
Q 006154 628 DMVLSGVSPDNQT 640 (658)
Q Consensus 628 ~m~~~g~~p~~~~ 640 (658)
++.+ ..|+...
T Consensus 474 ~a~~--~~~~~~~ 484 (514)
T 2gw1_A 474 ESAD--LARTMEE 484 (514)
T ss_dssp HHHH--HCSSHHH
T ss_pred HHHH--hccccHH
Confidence 9998 4666543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-22 Score=212.82 Aligned_cols=363 Identities=10% Similarity=0.004 Sum_probs=194.5
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
++.+...+..+.+.|++++|...++++++ ..|.++.++..++.+|.+.|++++|.+.|+++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 86 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 86 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888888888888888888876 456778888888888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGI--WPNV 251 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~ 251 (658)
+.++. ++.++..+...+...|++++|...|+ .... .|+. ....+..+...+....|...++++..... .+..
T Consensus 87 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 87 EIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred hcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 86533 67788888888888888888888886 3332 2221 22223344555566778888888765311 1111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChh-hHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCC
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSV-THNCIINGFCK--------LGRVEFAEEIRYAMIKAGIDC 322 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~ 322 (658)
......+..+....+.+.+...+.. ... ..+... ....+...+.. .|++++|..+++++.+.. +.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~ 234 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNT---SSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TV 234 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCC---CCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred cchHhHHHHHHHhcChHHHHHHHhh---ccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 2223444555566666666655544 111 112211 12222211111 135666666666666542 22
Q ss_pred Ch-------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 323 NV-------RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 323 ~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
+. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+... .+..
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 311 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPP 311 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHH
Confidence 21 13444444555555555555555555554 23344455555555555555555555555554322 1344
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
++..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4455555555555555555555555544322 33444444445555555555555555444432 112334444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMK 491 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~ 491 (658)
..|++++|...++++.
T Consensus 390 ~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 4445544444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=218.86 Aligned_cols=435 Identities=10% Similarity=0.023 Sum_probs=325.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (658)
....+..+...+.+.|++++|.+.|+++.+..+ .++.++..+..++.+.|++++|.+.++++++.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 346788899999999999999999999999754 378999999999999999999999999999875 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC--cCCChhhHHHHHHHHHhc
Q 006154 225 ALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS--VLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 302 (658)
.+...|++++|...|+. ... .|+.. ...+..+...+....|...++++ .... ..+........+..+...
T Consensus 102 ~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNEN---LSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHH---CC-------CCCCCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHH---HHhCccccccccchHhHHHHHHHh
Confidence 99999999999999974 332 23322 22344556667778899999984 3210 111112223344555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCc------HhHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNV-RTYATLIDGYAR--------GGSSEEALRLCDEMVKRGLMPN------NVVYNSTIH 367 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~ 367 (658)
.+.+.+...+...... .+.. .....+...+.. .|++++|..+++++.+...... ..++..+..
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 6666665544433322 1221 123333333222 2478999999999987643211 235667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.+..+. +..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 8889999999999999998853 45778888888999999999999999999887654 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999988643 256778888899999999999999999998864 33677888899999999999999999999877
Q ss_pred cCCCC------HhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 528 IGLLD------AITYNTLINGYFIN----------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 528 ~~~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
..+.+ ...+..+...+... |++++|...++++.+.. +.+...+..++.++.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65432 22345556777777 99999999999998853 446778889999999999999999999
Q ss_pred HHHHHc
Q 006154 592 KVMILH 597 (658)
Q Consensus 592 ~~~~~~ 597 (658)
+++.+.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999985
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-22 Score=206.37 Aligned_cols=316 Identities=13% Similarity=0.094 Sum_probs=174.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHH
Q 006154 214 ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHN 293 (658)
Q Consensus 214 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 293 (658)
.+...+..+...+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...|+++ ... .+.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~~-~p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV---IQL-KMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH---Hhc-CCCcHHHHH
Confidence 3455566666666666666666666666655422 24555666666666666666666666663 221 112345555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHH
Q 006154 294 CIINGFCKLGRVEFAEEIRYAMIKAGIDCNV---RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF 370 (658)
Q Consensus 294 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 370 (658)
.+..++.+.|++++|.+.|+++.+.. +.+. ..+..++..+.. ..+..+...+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~ 154 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 55666666666666666666655442 2222 344443332100 01112233355
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006154 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQ 450 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 450 (658)
..|++++|...++++.+... .+..++..++..+.+.|++++|.+.++++.+..+. +..++..+...+...|++++|..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666666555322 24555555666666666666666666666554322 45556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCC
Q 006154 451 LLSSMIVRGLIPDIITYGTL------------IDGYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDAS 514 (658)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 514 (658)
.++++..... .+...+..+ ...+.+.|++++|...|+++.+.... + ...+..+...+.+.|+
T Consensus 233 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 233 EVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCC
Confidence 6666654321 122223222 55566666666666666666653221 1 2355566666666666
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+++|...++++.+..+.+..+|..++.+|...|++++|...++++.+.
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666656666666666666666666666666666663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-22 Score=203.34 Aligned_cols=371 Identities=13% Similarity=0.032 Sum_probs=267.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
+...+..+...+.+.|++++|+.+|+++ ... .+.+..++..+..++...|++++|...++++.+.+ +.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~---l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAA---VDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4445666666666666666666666663 221 22345556666666666666666666666666554 444555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNN---VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
++..|...|++++|.+.|+++.+.... +. ..+..++..+... .+..+...+..
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~ 155 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 666666666666666666666554211 22 3333333322111 12233556788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|++++|.+.++++.+..+. +..++..+..+|.+.|++++|...++++.+.. +.+..++..+...|...|++++|+..
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987654 78889999999999999999999999998763 34788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCC----HhhHHHHHHHHHHcCCHH
Q 006154 487 YENMKKVEKKPNLVIYNSI------------INGLCKDASLDAAKSLLQASQRIGLLD----AITYNTLINGYFINGKIA 550 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 550 (658)
|+++.+... .+...+..+ ...+...|++++|...++++.+..+.+ ...|..++.++.+.|+++
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 999987533 244444444 788999999999999999999988775 347889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH------------HHHhCC
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVT------------RFSKNC 617 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~------------~~~~~g 617 (658)
+|+..++++.+.. +.+...|..++.+|...|++++|.+.++++.+. .|+ ...+..+.. .|...|
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 9999999998753 446889999999999999999999999999984 454 555555552 233344
Q ss_pred -----ChHHHHHHHHH-HHHCCCCCC-----------HHHHHHHHHHhhcCCCCCcC
Q 006154 618 -----SPEEVIELHDD-MVLSGVSPD-----------NQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 618 -----~~~~A~~~~~~-m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~a 657 (658)
+.+++.+.+++ ..+ ..|| ...+..+..+|-..|+.+++
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66778888887 443 2333 23788888888888876654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-18 Score=174.14 Aligned_cols=298 Identities=11% Similarity=0.027 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA 371 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 371 (658)
+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 3344444444444444444444444432 333444444444444444444444444444443211 33344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CChhhHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 372 EGDVEGALFVLSDMIDKHIC--PDHFTYSI------------LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
.|++++|...++++.+.... .+...+.. +...+...|++++|.+.++++.+..+. +...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44555554444444443110 01111111 233444444555555555444444322 3344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
.+...|++++|...++++.... +.+...+..+...+...|++++|...++++.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-------------------------- 215 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL-------------------------- 215 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 4444444444444444444432 1233444444444444444444444444444
Q ss_pred HHHHHHHHHHcCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHHh
Q 006154 518 AKSLLQASQRIGLLDAITYN------------TLINGYFINGKIAEAFAMFSEMRNVGIAVN-K----VGYNILINFLCK 580 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~ 580 (658)
+..+.+...+. .++..+...|++++|...++++.+.. |+ . ..+..+..++.+
T Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 216 ---------KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp ---------HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred ---------hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence 43333322222 22444555666666666666655532 22 1 123345555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|++++|++.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 285 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666665531 22455555556666666666666666666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-18 Score=173.18 Aligned_cols=305 Identities=14% Similarity=0.099 Sum_probs=214.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 324 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
+..+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 344555556666666666666666666554321 345555566666666666666666666555422 144555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMV--GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 481 (658)
+...|++++|.+.++++.+..+. .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55666666666666655554320 01112211111100 011223357788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..++..+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999988643 47788999999999999999999999999999888999999999999999999999999999988
Q ss_pred CCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChHHHHHH
Q 006154 562 VGIAVNKVGYN------------ILINFLCKFGCYQQARELMKVMILHGIIPDY----VTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 562 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
.. +.+...+. .++..+.+.|++++|.+.++++.+.... +. ..+..+...+.+.|++++|.+.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 53 23333333 3367799999999999999999986322 23 2355677889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 626 HDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 626 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
++++.+. .+.+..++..+...+...|++++|
T Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 295 CSEVLQM-EPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999985 234778999999999999998876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-16 Score=166.65 Aligned_cols=421 Identities=14% Similarity=0.124 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 143 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+|.-....+++|...|.+.+|++++++....+- .-+....+.++....+. +..+..+...+.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34566667788889999999999999999884321 13456667777766666 445555555555422 1 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.+...+...|.+++|..+|++... ...+.+.++. ..|++++|.++.++ . -+..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aer---v------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAER---C------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHh---c------CCHHHHHHHHHHHH
Confidence 366777888999999999988521 2223333332 67889999999887 2 14678889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALF 380 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 380 (658)
+.|++++|.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999998664 377788889999999999999999998877764 333334458888999988885443
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006154 381 VLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL 460 (658)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (658)
.. + .++...+..+...|...|++++|..+|..+ ..|..+...+++.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 32 2 345567777888999999999999999885 37888999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 461 IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 461 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
.+..+|...-.+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++......+.....|+-+.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 36688888888888899988888876643 336677778999999999999999999988887765778888887
Q ss_pred HHHHHc--CCHHHHHHHHHHHHHCCCCC------ChHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCC
Q 006154 541 NGYFIN--GKIAEAFAMFSEMRNVGIAV------NKVGYNILINFLCKFGCYQQARELM-------------KVMILHGI 599 (658)
Q Consensus 541 ~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~ 599 (658)
..|++- ++..++.++|..-.+ ++| +...|..++-.|.+.|+++.|.... +..+. -
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--k 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--K 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--c
Confidence 777764 345555555554333 222 4667888999999999999988322 22222 1
Q ss_pred CCCHHHHHHHHHHHHhCC---------------ChHHHHHHHH
Q 006154 600 IPDYVTYTTLVTRFSKNC---------------SPEEVIELHD 627 (658)
Q Consensus 600 ~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 627 (658)
..|...|...+..|...+ +++++.+++.
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 346667777777766555 6666666665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-16 Score=165.19 Aligned_cols=364 Identities=13% Similarity=0.018 Sum_probs=204.9
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHH
Q 006154 166 YDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK----ECKLEEALS 237 (658)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~ 237 (658)
.+.+....+.| ++.++..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45555556655655 566666666666666543 34455555555555 556666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 238 LYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
+|++..+.| +...+..|...|.. .+++++|...|++
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~------------------------------------- 140 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRL------------------------------------- 140 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-------------------------------------
Confidence 666655542 34444445555544 4455555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006154 314 AMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA----EGDVEGALFVLSDM 385 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 385 (658)
..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|..+|++.
T Consensus 141 -a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 141 -AAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp -HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 43332 23333344444433 444555555555444432 34444444444444 45555555555555
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006154 386 IDKHICPDHFTYSILTKGLCR----NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK----SNNLAAAKQLLSSMIV 457 (658)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 457 (658)
.+.| +...+..+...|.. .++.++|.+++++..+.+ +...+..+...|.. .++.++|...|++..+
T Consensus 214 ~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 214 ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 4432 33344444444443 455555555555555543 33444445555555 5666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006154 458 RGLIPDIITYGTLIDGYCKG-----GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIG 529 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 529 (658)
.| +...+..+...|... +++++|+..|++..+.+ +...+..+...+...| ++++|...+++..+.+
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 43 344445555555554 66777777777666643 3445555555555544 5677777777776653
Q ss_pred CCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 006154 530 LLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGI 599 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 599 (658)
++..+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.|.
T Consensus 362 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 362 --EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 56677777777777 677777777777777754 45666677777776 6777778777777777653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-16 Score=166.48 Aligned_cols=353 Identities=11% Similarity=-0.017 Sum_probs=238.6
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcC
Q 006154 144 ATPAVFDALVRACTQ----IGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVEN 215 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 215 (658)
.++.++..+...|.. .+++++|.+.|++..+.| ++.++..|...|.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467888888999988 899999999999999875 67788889999998 899999999999999875 6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCC
Q 006154 216 VNTFNLVIYALCK----ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLP 287 (658)
Q Consensus 216 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 287 (658)
...+..+...|.. .+++++|.++|++..+.| +..++..+...|.. .+++++|.+.|++. ... .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a---~~~---~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA---AEQ---G 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHT---T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHC---C
Confidence 6777788888888 789999999999998864 56677778887776 77888888888883 333 2
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcH
Q 006154 288 NSVTHNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNN 359 (658)
Q Consensus 288 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~ 359 (658)
+...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677777777777 778888888888877764 45566667777765 677777777777776653 44
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChh
Q 006154 360 VVYNSTIHWLFA----EGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN-----GCVKQAFKLHNQVLEEHMVGDAY 430 (658)
Q Consensus 360 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~ 430 (658)
..+..+...|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...+++..+.+ +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 455556666665 666777777777666543 334555555555554 56666666666665543 334
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006154 431 SYNILINYLCKSN---NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK----GGNIEGAVQVYENMKKVEKKPNLVIYN 503 (658)
Q Consensus 431 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (658)
.+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 4445555554434 4555555555555542 34444445555544 455555555555555432 234444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006154 504 SIINGLCK----DASLDAAKSLLQASQRIG 529 (658)
Q Consensus 504 ~l~~~~~~----~g~~~~a~~~~~~~~~~~ 529 (658)
.+...|.. .+++++|...|++..+.+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444444 445555555555554444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-17 Score=173.13 Aligned_cols=424 Identities=10% Similarity=0.067 Sum_probs=298.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.+..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |++..|.
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~ 83 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK 83 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence 46778899999998 478999999999999999874 4478899999999999999999999999999863 6887887
Q ss_pred HHHHHH-HhcCCHHHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHhcccccCC
Q 006154 221 LVIYAL-CKECKLEEALS----LYYRMLKS-GIWP-NVVCFNMIINEACQ---------VGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 221 ~l~~~~-~~~g~~~~A~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 284 (658)
..+... ...|+.++|.+ +|++.+.. |..| +...|...+..... .|+++.|..+|++. ....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a---l~~P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG---CVNP 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH---TTSC
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH---Hhch
Confidence 777533 34677777665 77776543 5444 34567777776554 68899999999994 4321
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH------HCC---C
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMV------KRG---L 355 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~g---~ 355 (658)
..+....|..........|. .+...++. ...++++.|..++.++. +.. +
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 11111223222211100110 01111110 12344555655555421 111 2
Q ss_pred CCc--------HhHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCChH-
Q 006154 356 MPN--------NVVYNSTIHWLFAE----GDV----EGALFVLSDMIDKHICPDHFTYSILTKGLCR-------NGCVK- 411 (658)
Q Consensus 356 ~p~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 411 (658)
.|+ ...|...+...... ++. ..+..+|++++... +-+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 332 23555554433322 222 46778888888753 3367777777777765 68876
Q ss_pred ------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHH
Q 006154 412 ------QAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--IITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 412 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A 483 (658)
+|.+++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999999987322336788999999999999999999999999985 343 35788888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 484 VQVYENMKKVEKKPNLVIYNSIING-LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+|++..+... .+...+...+.. +...|++++|..+|+...+..+.++..|..++..+.+.|+.++|..+|++....
T Consensus 376 ~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 376 RMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999988632 233344333222 336899999999999999988889999999999999999999999999999886
Q ss_pred CC-CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 563 GI-AVN--KVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 563 ~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+. .|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 232 447888888888999999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-18 Score=168.96 Aligned_cols=286 Identities=11% Similarity=-0.010 Sum_probs=159.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 006154 287 PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTI 366 (658)
Q Consensus 287 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 366 (658)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 345556666666666677777777666666554 445555555666666666777776666666654321 445566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006154 367 HWLFAEG-DVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 367 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (658)
..+...| ++++|...++++.+.... +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 666666666666654322 4455566666666666666666666666655433 334445555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHhcCCHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK--------KPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... +....++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 66666666665542 22445555555566666666666666655554210 2223445555555555555555
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
|...++++.+..+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555555544455555555555555555555555555554432 22334444444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-17 Score=172.53 Aligned_cols=429 Identities=12% Similarity=0.076 Sum_probs=303.0
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 169 IQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 169 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
|++.++.. +-+..+|..++. +.+.|++++|..+|+++++. .+.+...|...+..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444443 337888999888 47889999999999999986 3567888999999999999999999999999886 3
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHhcccccCCcCC-ChhhHHHHHHHHHh---------cCChHHHHHHHH
Q 006154 249 PNVVCFNMIINEA-CQVGDLEFALK----LFRKMGVMSGDSVLP-NSVTHNCIINGFCK---------LGRVEFAEEIRY 313 (658)
Q Consensus 249 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~ 313 (658)
|+...|...+... ...|+.++|.+ +|++. +...|..| +...|...+....+ .|+++.|..+|+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~a--l~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFA--LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH--HHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHH--HHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 6777777766533 35677776655 66663 22223333 45667776666554 677888888888
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH------
Q 006154 314 AMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDM------ 385 (658)
Q Consensus 314 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------ 385 (658)
+..+. +.+ ...|..........|. ..+.. ++. ...+++..|..++.++
T Consensus 155 ~al~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 155 RGCVN--PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHTTS--CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 88762 221 1222221111000110 01111 111 1234566666666552
Q ss_pred HhCC---CCCC--------hhhHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-----
Q 006154 386 IDKH---ICPD--------HFTYSILTKGLCRN----GCV----KQAFKLHNQVLEEHMVGDAYSYNILINYLCK----- 441 (658)
Q Consensus 386 ~~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 441 (658)
.+.. ++|+ ...|...+...... ++. +.+..+|++.+...+. +...|..++..+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhh
Confidence 2221 2333 23555555433222 232 4788899999887544 78888888888876
Q ss_pred --cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHH
Q 006154 442 --SNNLA-------AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-L-VIYNSIINGLC 510 (658)
Q Consensus 442 --~~~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 510 (658)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 79987 99999999987323346888999999999999999999999999985 443 3 58888999889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLING-YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
+.|++++|..+|+++.+..+.+...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..
T Consensus 368 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999998876655555444333 346899999999999998853 3467889999999999999999999
Q ss_pred HHHHHHHcCC-CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 590 LMKVMILHGI-IPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 590 ~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+|++++..+. .|+ ...|..++......|+.+.+..+.+++.+.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999998632 332 457888888888999999999999999874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-18 Score=169.36 Aligned_cols=289 Identities=12% Similarity=0.014 Sum_probs=167.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
+...+..+...+...|++++|..+++++.+... .+...+..++..+...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 334444455555555555555555555554322 23344444555555556666666666655554332 4455555556
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 438 YLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 438 ~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.+...| ++++|...++++..... .+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 56666666666555422 23445555666666666666666666666654222 3444555666666666666
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG--------IAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+|...++++.+..+.+..++..++..+...|++++|...++++.+.. .+.+..++..++.++...|++++|+
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66666666666666666666666666667777777776666665421 1223456666667777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh-hcCCC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP-DNQTYNAIISPL-LGEKS 653 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~ 653 (658)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+ +.| +...+..+..++ ...|+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 7777766542 22455666666667777777777777776665 333 445555565555 34443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-15 Score=165.50 Aligned_cols=352 Identities=14% Similarity=0.112 Sum_probs=234.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKEC 230 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 230 (658)
.+...+...|.+++|.++|++... ...+.+.++. ..+++++|.+++++. -+..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 356777788888888888887521 2223333332 667788888887755 23567778888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 231 KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 231 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
++++|++.|.+. -|...|..++.++.+.|++++|.+.|... ... .++....+.++.+|++.+++++...
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA---rk~--~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA---RKK--ARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH---Hhh--cccccccHHHHHHHHhhcCHHHHHH
Confidence 888888888553 26667778888888888888888888763 322 1333334457788888888775443
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 390 (658)
.. + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 1 445666777888888888888888888774 377888888888888888888887762
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-....|+-+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 5677777777888888888777655532 2255667778888888888888888887776543 2234456556
Q ss_pred HHHHHhc--CChHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CC
Q 006154 471 IDGYCKG--GNIEGAVQVYENMKKVEKK------PNLVIYNSIINGLCKDASLDAAKSLLQASQRI------------GL 530 (658)
Q Consensus 471 i~~~~~~--g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~ 530 (658)
...|++. ++..++.+.|..-.. ++ -+...|..++..|.+.|+++.|...+-+.... ..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv 1398 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 1398 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc
Confidence 6666553 334444444443222 11 14566778888888888888777332221111 22
Q ss_pred CCHhhHHHHHHHHHHcC---------------CHHHHHHHHH
Q 006154 531 LDAITYNTLINGYFING---------------KIAEAFAMFS 557 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 557 (658)
.++..|...+..|...+ +.+++.++|.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 36777777777776666 6666666655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=172.69 Aligned_cols=310 Identities=13% Similarity=-0.012 Sum_probs=210.9
Q ss_pred HhcCCHHHHHH-HHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 262 CQVGDLEFALK-LFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 262 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
...|++++|.. .+++...........+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 88764222222222245678888888899999999999999988875 56778888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|.+.++++.+... .+..++..+...+...|++++|...++++...... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 999999988887643 26677888888888888888888888888875432 22221111000 00 0
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 006154 421 LEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL 499 (658)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 499 (658)
.. ....+..+...+ ..|++++|...++++....... +..++..+...+.+.|++++|+..++++.+.. +.+.
T Consensus 179 ----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 001111222223 6777788888887777653221 46777778888888888888888888877753 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------ChH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV----------NKV 569 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~ 569 (658)
..+..+...+...|++++|...++++.+..+.+..++..++.+|.+.|++++|...|+++.+..... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 7788888888888888888888888888877788888888888888888888888888887632111 157
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+|..+..++...|++++|..++++..
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 78888888999999888888876544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-18 Score=170.80 Aligned_cols=264 Identities=11% Similarity=-0.014 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK 441 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (658)
+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++.+..+. +..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 44444444444444444444444444321 23344444444444555555555555544444322 34444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIIT----------------YGTLIDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIYNS 504 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 504 (658)
.|++++|...++++...... +... +..+. .+...|++++|...++++.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555554443211 1111 11223 3338899999999999998864332 5788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
+...+...|++++|...++++....+.+..+|..++..+...|++++|...++++.+.. +.+...+..++.+|.+.|++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999988899999999999999999999999999998853 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 585 QQARELMKVMILHGIIP----------DYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++|...++++.+..... ...+|..+..++...|++++|..++++.+
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999988642111 16789999999999999999998877543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=160.59 Aligned_cols=282 Identities=11% Similarity=0.081 Sum_probs=125.2
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALS 237 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 237 (658)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999999882 3458999999999999999999999652 577788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 238 LYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
+++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING----------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC----------C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77776664 44677788899999999999998877643 56679999999999999999999999876
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 006154 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTY 397 (658)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 397 (658)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47889999999999999999999887 278899999999999999999965554422 244445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS--NNLAAAKQLLSSMIVRGLIP------DIITYGT 469 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~~~~ 469 (658)
..++..|.+.|.+++|..+++..+... ......|+-+.-.|++- ++..+.++.|..- .+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568888999999999999999888765 33566777777777664 3344444444311 11222 3445677
Q ss_pred HHHHHHhcCChHHHHHH
Q 006154 470 LIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~ 486 (658)
+...|...++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 77777788888877763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=164.45 Aligned_cols=244 Identities=12% Similarity=-0.039 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4446666666666666666666666666553 44555566666666666666666666665555421 134445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAA 448 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 448 (658)
|...|++++|...++++.+.... +...+..+. .....+..+...+...|++++|
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555555442100 000000000 0112223334445555555555
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 449 KQLLSSMIVRGLI-PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 449 ~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
...++++...... ++...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544211 134445555555555555555555555555432 12344555555555555555555555555555
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+.+..++..++.+|...|++++|...|+++.+
T Consensus 276 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544555555555555555555555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=165.54 Aligned_cols=281 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+ . +|..+|..++.++...|++++|
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik---a------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK---A------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc---C------CCHHHHHHHHHHHHhCCCHHHH
Confidence 344555555555441 112444555555555555555555533 1 2344455555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK 388 (658)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 388 (658)
+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5544444332 2334445555555555555555544442 134445555555555555555555555544
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 389 HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG 468 (658)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (658)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 24555555555555555555555554 144555555555555555555533332211 1222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCC-----CCHhhHHHHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK--DASLDAAKSLLQASQRIGL-----LDAITYNTLIN 541 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~ 541 (658)
.++..|.+.|++++|+.+++...... +.....|+-+.-.|++ .++..+..+.|..-....+ .+...|..++.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555432 2233444444444433 2233333333332111111 14456666666
Q ss_pred HHHHcCCHHHHHH
Q 006154 542 GYFINGKIAEAFA 554 (658)
Q Consensus 542 ~~~~~g~~~~A~~ 554 (658)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=165.60 Aligned_cols=265 Identities=12% Similarity=0.006 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
.+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|.+.++++.+..+. +..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 344455555555555555555555554322 24445555555555555555555555555554332 4555555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLI---------PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIINGLC 510 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 510 (658)
..|++++|...++++.+.... .....+..+...+...|++++|+..++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666655543110 01233445677888999999999999999986433 26888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..|++++|...++++.+..+.+..+|..++.+|...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998899999999999999999999999999998863 34588899999999999999999999
Q ss_pred HHHHHHcCCC-----------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 006154 591 MKVMILHGII-----------PDYVTYTTLVTRFSKNCSPEEVIELHDD 628 (658)
Q Consensus 591 ~~~~~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 628 (658)
++++.+.... .+..+|..+..++...|+.+.+....++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999864211 0256788999999999999988877665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-15 Score=158.68 Aligned_cols=384 Identities=11% Similarity=-0.027 Sum_probs=211.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK--------GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-----G 211 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g 211 (658)
....|+.|..++...|++++|++.|++..+. .......+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456788888888888888888888776542 11223566777777888888888888887776642 0
Q ss_pred -C-CcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHhcccccCC
Q 006154 212 -Y-VENVNTFNLVIYALCKE--CKLEEALSLYYRMLKSGIWPNVVCFNMIINE---ACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 212 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
. .....++..+..++.+. +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++. ...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a---l~l- 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQA---IRL- 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH---HHH-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---hhc-
Confidence 0 11234555554444443 4577888888777765322 33344444333 33456667777777763 221
Q ss_pred cCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHh
Q 006154 285 VLPNSVTHNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNV 360 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 360 (658)
-+.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 11234445444444433 345667777777776654 556666777777777777777777777777665322 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
++..+..+|...+.... ... ...........+..++|...+++..+..+. +..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHH
Confidence 55555544432211100 000 000000011122356777777777776543 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDII--TYGTLID-GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
..|++++|...|++.......+... .+..+.. .....|++++|+..|++..+. .|+..... +....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHH
Confidence 8888888888888877754332221 1222222 234567788888888877764 33332211 12234
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
+.++++......|.++.+|..++.+|...|++++|++.|++.++.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4555566666666666777777777777777777777777776643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-17 Score=158.09 Aligned_cols=280 Identities=10% Similarity=-0.053 Sum_probs=188.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 324 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
...+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344555666666667777777777666655322 45556666666666666666666666666542 2245555566666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCChH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL-ID-GYCKGGNIE 481 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~-~~~~~g~~~ 481 (658)
+...|++++|.+.++++.+..+. +...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666666655332 22222211000 0111111112 11 256678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..++..+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888887643 36778888888888889999999999988888887888899999999999999999999998887
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP-----------DYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.. +.+..++..++.++...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++..
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 3457788888899999999999999999888653221 46788888888999999999988887544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=155.22 Aligned_cols=281 Identities=11% Similarity=-0.024 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 006154 288 NSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367 (658)
Q Consensus 288 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 367 (658)
+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44556677778888888888888888887764 55677778888888888888888888888877632 25667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCCH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN--YLCKSNNL 445 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 445 (658)
.+...|++++|...++++.+.... +...+..+.... |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888875332 222222221000 01111111211 24455566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655432 245566666666666777777777776666542 234566677777777777777777777777
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-----------NKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
.+..+.+..++..++..|...|++++|...++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77766677777777777778888888888877776642111 3566777778888888888887777654
Q ss_pred H
Q 006154 595 I 595 (658)
Q Consensus 595 ~ 595 (658)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-16 Score=150.10 Aligned_cols=249 Identities=9% Similarity=0.005 Sum_probs=138.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMPNN--VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVK 411 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (658)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34455666665555544332 2222 2334445556666666665554432 12344555555556666666666
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 412 QAFKLHNQVLEEHMVG-DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 412 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665554322 344445555666666666666666654 235556666666666666666666666666
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006154 491 KKVEKKPNLVIY---NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567 (658)
Q Consensus 491 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 567 (658)
.+.. |+.... ...+..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|...|+++.+.. +.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 6542 332211 1122333334666666666666666666666666666666666677777766666666542 334
Q ss_pred hHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 006154 568 KVGYNILINFLCKFGCYQQ-ARELMKVMILH 597 (658)
Q Consensus 568 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 597 (658)
..++..++..+...|+.++ +.++++++.+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5566666666666666654 45666666653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-15 Score=155.60 Aligned_cols=375 Identities=13% Similarity=0.006 Sum_probs=240.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhccccc----CCcCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGVMSG----DSVLP-NSVTHNCIINGFCKLGRVEFAEEIRYAMIKA----- 318 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 318 (658)
.....||.|...+...|++++|++.|++...+.. ....| ...+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999998533311 11122 3568899999999999999999999887653
Q ss_pred C--CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCC
Q 006154 319 G--IDCNVRTYATLIDGYAR--GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW---LFAEGDVEGALFVLSDMIDKHIC 391 (658)
Q Consensus 319 ~--~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 391 (658)
+ ......++..+..++.. .+++++|++.|++..+.... +...+..+..+ +...++.++|++.+++.++....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 01234566666655554 45789999999999886422 34445444444 44567888899999988875432
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006154 392 PDHFTYSILTKGLCR----NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY 467 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 467 (658)
+...+..+...+.. .|+.++|.+.+++..+..+. +..++..+...|...|++++|...+++..+... .+...+
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 55556555555544 46778999999998887654 677888899999999999999999999888643 356677
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 468 GTLIDGYCKG-------------------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 468 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
..+...|... +.++.|...+++..+... .+...+..+...+...|++++|...|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7776666432 234566667776666532 24556677777888888888888888888777
Q ss_pred CCCCH---hhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006154 529 GLLDA---ITYNTLIN-GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV 604 (658)
Q Consensus 529 ~~~~~---~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 604 (658)
.+.+. ..+..+.. .+...|++++|+..|++..+. .|+...... ....+.+++++.+... +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 65522 22333333 234667888888888888773 455432221 2234445555555542 44677
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHH
Q 006154 605 TYTTLVTRFSKNCSPEEVIELHDDMVLSG-VSPDNQT 640 (658)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 640 (658)
+|..+...|...|++++|++.|++.++.| ..|+..+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 89999999999999999999999998863 3344443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-16 Score=149.06 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=120.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP-DHFTYSILTKGLCRNG 408 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 408 (658)
+.++|...|++++|+..++. .-.|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444443322 112333444444444444455555555555544443222 2333333444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChHHHHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY---GTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~ 485 (658)
++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555544 2244455555555555555555555555555542 222111 112233334467777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE-AFAMFSEMRNV 562 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 562 (658)
+|+++.+. .+.+...++.+..++...|++++|...++++.+..|.++.++..++..+...|+.++ +.++++++.+.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777765 334666777777777777777777777777777777777777777777777777654 45677777663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=180.07 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLI 331 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 331 (658)
.|||++|++||+.|++++|.++|++|..+...|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||+.||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35555555555555555555555543333334455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 332 DGYARGGSS-EEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 332 ~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 555555542 4555555555555555555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=175.42 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRI---GLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNI 573 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 573 (658)
-..+|+++|++||+.|++++|.++|+.|.+. |.. |..+||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456777777777777777777777665432 333 677777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 574 LINFLCKFGC-YQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 574 l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
+|+++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777665 35666777777777777777777766655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=136.48 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH
Q 006154 397 YSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI--PD----IITYGTL 470 (658)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~----~~~~~~l 470 (658)
+..+...+...|++++|.+.++++.+.. .+...+..+...+...|++++|...+++..+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444555555555555444444 34444455555555555555555555544432110 11 3455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
...+...|++++|...++++.+.. |+. ..+...|++++|...++.+....+.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 556666666666666666665532 222 23444566666777777666665556666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+|...++++.+.. +.+..++..++.++...|++++|++.++++.+.. +.+...|..+...+.+.|++++|.+.+++..
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777776643 3346666677777777777777777777776642 2345666667777777777777777777766
Q ss_pred HC
Q 006154 631 LS 632 (658)
Q Consensus 631 ~~ 632 (658)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-15 Score=149.41 Aligned_cols=378 Identities=11% Similarity=0.015 Sum_probs=202.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDL---EFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+..|++ .... +...+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~---A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRA---AADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHH---HHhC----CHHHHHHHHHH
Confidence 3444555666666666666665543 333344444455555555 666666666 2221 33445555554
Q ss_pred HHhcC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCcHhHHHHHHHHHH
Q 006154 299 FCKLG-----RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSE---EALRLCDEMVKRGLMPNNVVYNSTIHWLF 370 (658)
Q Consensus 299 ~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 370 (658)
+...+ ++++|...|++..+.| . ...+..|...|...+..+ ++.+.+......| +...+..+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44443 5566777776666655 2 225555566655544332 3444444444433 3445555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----C
Q 006154 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG---CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS----N 443 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 443 (658)
..+.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.+.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 66644444333222222111223336666667777777 777777777777776643 444445556666544 5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDG-Y--CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-----SL 515 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 515 (658)
++++|...|++.. .| +...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 7777777777776 32 34444555554 3 34677788888887777654 5556666666665 44 77
Q ss_pred HHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHH
Q 006154 516 DAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQA 587 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 587 (658)
++|...|++.. +.++.++..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 88888887777 3377777777777765 347888888888887765 33445556666653 3478888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...++...+.|.. +.......+......++..+|..+.++..+
T Consensus 378 ~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888776632 222222222222233455566666665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-14 Score=134.64 Aligned_cols=225 Identities=13% Similarity=-0.011 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----hhhHH
Q 006154 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--D----AYSYN 433 (658)
Q Consensus 360 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 433 (658)
..+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.++++.+..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666655554 455556666666666666666666666655542211 1 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA 513 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 513 (658)
.+...+...|++++|...++++.... |+. ..+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777776642 332 33555677888888888877752 224567777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 593 (658)
++++|...++++.+..+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888888888788888888888888889999988888888753 34577788888888888999999888888
Q ss_pred HHHc
Q 006154 594 MILH 597 (658)
Q Consensus 594 ~~~~ 597 (658)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=146.76 Aligned_cols=379 Identities=13% Similarity=0.014 Sum_probs=167.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEI---GRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
+...+.+.|++++|.+.|++..+.| ++.++..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667777888888888888887765 344555566666667777 7888888877753 44455555554444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 229 EC-----KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF---ALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 229 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.| ++++|..+|++..+.|. ..++..|...|...+..+. +.+.+.. .... .+...+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~---a~~~---g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQ---WQAA---GYPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHH---HHHH---TCTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH---HHHC---CCHHHHHHHHHHHH
Confidence 44 66778888888777542 2355566666655443332 2222222 1111 12334444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc----C
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG---SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE----G 373 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~----g 373 (658)
..+.++++......+.+.-...+...+..|...|...| +.++|++.|++..+.|.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 55543333333222221111222234555555555555 555555555555554422 333333333333322 3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHH
Q 006154 374 DVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL--CKSNNLAAAKQL 451 (658)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~ 451 (658)
+.++|..+|++.. +-+...+..+...| + ...+++++|...
T Consensus 232 d~~~A~~~~~~aa----~g~~~a~~~Lg~~~----------------------------------~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 232 DEKTAQALLEKIA----PGYPASWVSLAQLL----------------------------------YDFPELGDVEQMMKY 273 (452)
T ss_dssp CHHHHHHHHHHHG----GGSTHHHHHHHHHH----------------------------------HHSGGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHc----CCCHHHHHHHHHHH----------------------------------HhCCCCCCHHHHHHH
Confidence 4455555554444 11233333333331 2 234455555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006154 452 LSSMIVRGLIPDIITYGTLIDGYCKGG-----NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLL 522 (658)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 522 (658)
|++..+.| +...+..+...|. .| ++++|+..|++.. .-+...+..+...|.. ..++++|...+
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 55544443 3333444444443 22 5555555555544 1233444444444433 22555566665
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 523 QASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++..+.+ ++.....|...|.. ..+.++|...|+...+.|. ++.......+......++..+|..+.++...
T Consensus 346 ~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 346 LTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555543 33444445554443 3456666666666666552 2222111122222223345556666655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-14 Score=130.90 Aligned_cols=198 Identities=14% Similarity=-0.019 Sum_probs=126.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...+..+...+.+.|++++|...|++.++... .+...+..+...+.+.|++++|+..+++..+..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 444555555555566666666666665555422 2455555555666666666666666666655422 24455555566
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 508 GLCKD-----------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 508 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
.+... |++++|...++++.+..|.+...+..+..++...|++++|+..|+++.+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 888888888888888888788888888888888888888888888887765 57777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++...|++++|+..++++.+.. +.+...+..+...+.+.|++++|.+.+++.-
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888752 3356677777788888888888888777653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-14 Score=129.01 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
|++++|+..+++..+..+. +...+..+...+...|++++|...++++.+.. .++..+..+..+|...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555443221 34444455555555555555555555555544 455555555555555555555555555
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
++.+.. +.+...+..+...+...|++++|+..+++.
T Consensus 176 ~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555432 223444555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=131.18 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP--DIITYGTLIDGYC 475 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~ 475 (658)
......+...|++++|.+.++++.+..+. +...+..+...+...|++++|...+++....+..| ....|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555554332 33455555555555555555555555555522111 1223555555566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
..|++++|+..+++..+... .+..++..+...+...|++++|...++++.+..+.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655422 24455666666666666666666666666666555666666666333334466666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhCCChHHHHHH
Q 006154 556 FSEMRNVGIAVNKVGYNILINFLCKFGC---YQQARELMKVMILHG-IIPD------YVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 556 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
++++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666542 2234555556666666665 566666666655431 1122 13555566666667777777777
Q ss_pred HHHHHH
Q 006154 626 HDDMVL 631 (658)
Q Consensus 626 ~~~m~~ 631 (658)
++++.+
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777666
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-11 Score=130.43 Aligned_cols=434 Identities=12% Similarity=0.082 Sum_probs=253.1
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC---HhHHHHHHHHH
Q 006154 131 FLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNE---IGRFWKLYKEM 207 (658)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~ 207 (658)
.++.-+. ..|.+...|..++..+.+.+.++.+..+|+++... ++.+...|...+..-.+.|+ ++.+..+|++.
T Consensus 54 ~lE~~l~---~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIE---EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHH---HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 3444444 45678888888888888888888888888888876 45567778888887777777 88888888888
Q ss_pred HhCC-CCcCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHh---------cCC
Q 006154 208 VSCG-YVENVNTFNLVIYALCKECKL--------EEALSLYYRMLK-SGI-WPN-VVCFNMIINEACQ---------VGD 266 (658)
Q Consensus 208 ~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~ 266 (658)
+... .+|++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8753 136777777777665555543 334466766554 355 444 3466666665542 234
Q ss_pred HHHHHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 267 LEFALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEAL 344 (658)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 344 (658)
++.+..+|++ ... ++.. ..+|......--..+. ..+.+++.+ ...+++.|.
T Consensus 210 ~~~~R~iy~r---aL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 210 VQYIRKLYKT---LLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHH---HTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHHHHHHHH---HHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence 5667777777 332 2111 1222211111000000 011111111 011233344
Q ss_pred HHHHHHHHC--CCC---------------C--c------HhHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCC
Q 006154 345 RLCDEMVKR--GLM---------------P--N------NVVYNSTIHWLFAEG-------DVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 345 ~~~~~~~~~--g~~---------------p--~------~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 392 (658)
..+.++... ++. | + ...|...+..--..+ ..+.+..+|++++.. .+-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 444333210 110 1 0 123444433222221 123345567766654 333
Q ss_pred ChhhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC
Q 006154 393 DHFTYSILTKGLCRNGCVKQAF-KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---------LIP 462 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~p 462 (658)
+...|...+..+...|+.++|. +++++.....+ .+...|...+....+.|++++|.++|+++.... -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6666666677677777777775 88887776432 355566667777777888888888887776531 012
Q ss_pred C------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 006154 463 D------------IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD-ASLDAAKSLLQASQRIG 529 (658)
Q Consensus 463 ~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 529 (658)
+ ...|...+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++.+.|.++|+...+..
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1 2346666666666777888888888777651112233333333222233 44788888888877776
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.++..|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6677777777777777788888888888877753211 2456677777777778888888888887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-11 Score=128.31 Aligned_cols=457 Identities=12% Similarity=0.084 Sum_probs=304.6
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---HHHHH
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK---LEEAL 236 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~ 236 (658)
....+.+..|++.+..++ -|..+|..++..+.+.+.++.+..+|+.++.. ++.....|...+..-.+.|+ ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 345566666777766654 48999999999999999999999999999976 56677888888888888888 99999
Q ss_pred HHHHHHHhCCC-CCChhhHHHHHHHHHhcCCH----H----HHHHHHHHhcccccCCc-CCC-hhhHHHHHHHHHh----
Q 006154 237 SLYYRMLKSGI-WPNVVCFNMIINEACQVGDL----E----FALKLFRKMGVMSGDSV-LPN-SVTHNCIINGFCK---- 301 (658)
Q Consensus 237 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~----~----~A~~~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~---- 301 (658)
.+|++.+.... .|++..|...+....+.++. + ...++|+.. +..-|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA--l~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV--VDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH--HHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH--HHHhCcccccchHHHHHHHHHHHhcccc
Confidence 99999887631 37888888888777666664 2 344677774 333444 443 4567666655432
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 302 -----LGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 302 -----~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
.++++.+..+|+++... |.. ..+|......-... +...+.+++.+. ..+
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~ 257 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQ 257 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHH
Confidence 33466677777777742 221 12222111110000 011122222111 112
Q ss_pred HHHHHHHHHHHHh--CCC----C-----------C--C------hhhHHHHHHHHHhcC-------ChHHHHHHHHHHHH
Q 006154 375 VEGALFVLSDMID--KHI----C-----------P--D------HFTYSILTKGLCRNG-------CVKQAFKLHNQVLE 422 (658)
Q Consensus 375 ~~~a~~~~~~~~~--~~~----~-----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~ 422 (658)
++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.+.
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 3333333333221 011 1 1 0 123333443222222 12345677888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------
Q 006154 423 EHMVGDAYSYNILINYLCKSNNLAAAK-QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK------ 495 (658)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 495 (658)
..+. +...|...+..+...|+.++|. ++|++.... ++.+...|...+....+.|+++.|..+|+.+.+...
T Consensus 338 ~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 HVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 7544 7888988999899999999997 999999874 445666777788888899999999999999886410
Q ss_pred ---CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHhhHHHHHHHHHHc-CCHHHHHHHHHH
Q 006154 496 ---KPN------------LVIYNSIINGLCKDASLDAAKSLLQASQRI-GLLDAITYNTLINGYFIN-GKIAEAFAMFSE 558 (658)
Q Consensus 496 ---~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 558 (658)
.|+ ..+|...+....+.|+.+.|..+|..+.+. .......|...+..-.+. ++.+.|..+|+.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 132 346777788888889999999999999887 333555565544444454 458999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 559 MRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 559 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
.++. ++.+...+...++.....|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+..+.++|.+. .|
T Consensus 496 ~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P 572 (679)
T 4e6h_A 496 GLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FP 572 (679)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--ST
T ss_pred HHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9886 44566667788888889999999999999999763322 3467888888888999999999999999985 55
Q ss_pred CHHHHHHHHHHhh
Q 006154 637 DNQTYNAIISPLL 649 (658)
Q Consensus 637 ~~~~~~~l~~~~~ 649 (658)
+......+++-|.
T Consensus 573 ~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 573 EVNKLEEFTNKYK 585 (679)
T ss_dssp TCCHHHHHHHHTC
T ss_pred CCcHHHHHHHHhc
Confidence 5555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=128.83 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc--HhHHHHHHHHH
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN--NVVYNSTIHWL 369 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ll~~~ 369 (658)
+......+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+.+..|+ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555555555555555543 33344555555555555555555555555554321111 11244555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
...|++++|+..+++..+.... +..++..+...+...|++++|.+.+++..+..+. +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543222 3344555555555555555555555555444222 3334444441222233555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGN---IEGAVQVYENMKKVE-KKPN------LVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 519 (658)
+.++++.+... .+...+..+...+...|+ +++|...++++.+.. ..|+ ...+..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555544321 123444444444444444 444555554444321 0111 123334444444444444444
Q ss_pred HHHHHHHHcCCCCHhhHHHH
Q 006154 520 SLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l 539 (658)
..++++.+..|.+..++..+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHh
Confidence 44444444444444444333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-13 Score=135.34 Aligned_cols=228 Identities=13% Similarity=0.054 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN-LAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
.|..+...+.+.|++++|++.++++++..+. +..+|+.+...+...|+ +++|+..+++++..... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444444455555555555555555555433 44555555555555554 55555555555554322 445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH-cCCHHHH-
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI-NGKIAEA- 552 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 552 (658)
...|++++|+..|+++++.... +...|..+..++...|++++|...++++.+..+.+..+|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5556666666666655554322 455555555555556666666666666666655555666666665555 3333444
Q ss_pred ----HHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---------
Q 006154 553 ----FAMFSEMRNVGIAVNKVGYNILINFLCKFG--CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC--------- 617 (658)
Q Consensus 553 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--------- 617 (658)
+..+++.++.. +-+...|+.+..++.+.| ++++|++.++++ +. -+.+...+..++..|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 35555555532 223445555555555555 455566655555 21 2223445555555555542
Q ss_pred ChHHHHHHHHHH
Q 006154 618 SPEEVIELHDDM 629 (658)
Q Consensus 618 ~~~~A~~~~~~m 629 (658)
..++|+++++++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 135566666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-12 Score=121.18 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK----SNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 344444455555555555555555555521 33445555555555 555555655555555543 44555555
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 471 IDGYCK----GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 471 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 555555 666666666666665542 45555556666665 666666666666666554 45556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 543 YFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 543 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 666 667777777777666643 34556666666666 677777777777766653 2455556666666
Q ss_pred h----CCChHHHHHHHHHHHHCC
Q 006154 615 K----NCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 615 ~----~g~~~~A~~~~~~m~~~g 633 (658)
+ .+++++|.+++++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 6 677777777777776643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-12 Score=122.42 Aligned_cols=224 Identities=10% Similarity=-0.049 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcCHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVENVNTF 219 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~ 219 (658)
.++.++..+...|...|++++|.+.|++..+.+ ++.++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456777778888888888888888888887733 55677777777777 788888888888887764 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCCChhh
Q 006154 220 NLVIYALCK----ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLPNSVT 291 (658)
Q Consensus 220 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 291 (658)
..+...+.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++. ...+ +...
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~---~~~a 148 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA---CDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH---HHTT---CHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH---HhcC---cHHH
Confidence 777777777 777888888887777653 55666677777776 77777777777763 3322 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 292 HNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 292 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 5556666665 666666666666666543 34555555666666 666666666666665553 244445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhC
Q 006154 364 STIHWLFA----EGDVEGALFVLSDMIDK 388 (658)
Q Consensus 364 ~ll~~~~~----~g~~~~a~~~~~~~~~~ 388 (658)
.+...|.+ .+++++|...+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555555 55555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-13 Score=123.43 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
.+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 3444444455555555555555555444322 344445555555555555555555555544321 23444445555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA 554 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 554 (658)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++|..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554421122 233444444555555555555555555555444445555555555555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555554432 23344444455555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=125.38 Aligned_cols=211 Identities=13% Similarity=-0.008 Sum_probs=182.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5667888899999999999999999998864 34678888999999999999999999999988643 367888999999
Q ss_pred HHhcCCHHHHHHHHHHHHH--cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 006154 509 LCKDASLDAAKSLLQASQR--IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 586 (658)
+...|++++|...++++.. ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998 555578899999999999999999999999998864 3457888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 587 ARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645 (658)
Q Consensus 587 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 645 (658)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .|+...+..++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 999999998753 456778888889999999999999999999984 56655544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-13 Score=132.28 Aligned_cols=248 Identities=10% Similarity=0.006 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGS-SEEALRLCDEMVKRGLMPNNVVYNSTIH 367 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 367 (658)
...|..+...+.+.|++++|++.++++.+.. +.+...|+.+...+...|+ +++|+..|+++.+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3445566666666677777777777766654 4456666666666666665 77777777766665332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK-SNNLA 446 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 446 (658)
++...|++++|+..|+++++.... +...|..+..++...|++++|++.++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 666666666666666666665333 5556666666666666666666666666666544 55566666666666 44434
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------
Q 006154 447 AA-----KQLLSSMIVRGLIPDIITYGTLIDGYCKGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA------ 513 (658)
Q Consensus 447 ~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 513 (658)
+| +..+++.+.... -+...|..+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 44 355555554322 13445555555555555 455566555555 22 2224445555555555542
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCHhhHHHHHHHH
Q 006154 514 ---SLDAAKSLLQAS-QRIGLLDAITYNTLINGY 543 (658)
Q Consensus 514 ---~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 543 (658)
.+++|.++++++ .+..+.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 135555566555 455444555555544433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-13 Score=121.39 Aligned_cols=198 Identities=9% Similarity=-0.077 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC 510 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (658)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444432 1234444444445555555555555555544432 123444455555555
Q ss_pred hc-CCHHHHHHHHHHHHH--cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 511 KD-ASLDAAKSLLQASQR--IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 511 ~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.. |++++|...++++.+ ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555554 222234555555555556666666666665555532 22345555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.+.++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666655532113444455555555556666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-14 Score=132.54 Aligned_cols=221 Identities=13% Similarity=0.002 Sum_probs=99.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMP---NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ 412 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (658)
..|++++|+..++++.+..... +...+..+...+...|++++|...++++.+.... +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 3455555555555555542111 2334444555555555555555555555543221 34444445555555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
|.+.++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------------------- 141 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------------------------------- 141 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------------------
Confidence 55555555444322 33444444444444444444444444444421
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CChH
Q 006154 493 VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA---VNKV 569 (658)
Q Consensus 493 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~ 569 (658)
|+.......+..+...|++++|...++......+.+...+. ++..+...++.++|...++++.+.... .+..
T Consensus 142 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 142 ----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp ----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 22222222222233344455555555444444333322222 333444444455555555544432100 0134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+..++..+.+.|++++|...++++.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-12 Score=118.85 Aligned_cols=202 Identities=10% Similarity=-0.000 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 444555556666666666666666666655432 45566666666667777777777776666543 2255666667777
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 474 YCKG-GNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 474 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7777 77777777777777622222 245666777777777888888888887777777777778888888888888888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|...++++.+.....+...+..+...+...|+.++|..+++.+...
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888776532145666777777777888888888888877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-13 Score=125.98 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 33445555566666666666666666666542 22455666666666667777777777766665432 25566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.+...|++++|...++++.+..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777666666777777777777777777777777776642 33566667777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
++.++++.... +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 77777776652 33466677777777777777777777777776
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=131.03 Aligned_cols=247 Identities=9% Similarity=-0.055 Sum_probs=159.9
Q ss_pred hcCChhHHHHHHHHHHhCCC---ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006154 158 QIGATEGAYDVIQKLKVKGH---SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 234 (658)
..|++++|.+.|+++.+... +.+..++..+...+...|++++|...|+++++.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778888888888887632 2246677788888888888888888888888764 3457778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.+.|+++.+.... +..++..+...+...|++++|...++++ .. ..|+.......+..+...|++++|...+.+
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a---~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAF---YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH---HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHH---HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888775322 5667778888888888888888888874 32 234443444444555666788888888877
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 315 MIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP---NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC 391 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (658)
..... +++...+ .++..+...++.++|.+.+.+........ +...+..+...+.+.|++++|...++++.+..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 66653 3343333 35666667777777777777765542110 13456666666666777777777776666542
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLH 417 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (658)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 122233444555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-13 Score=124.69 Aligned_cols=200 Identities=16% Similarity=0.056 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 334445555555666666666666666654332 455566666666666666666666666665422 245666666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777666532 355666677777777777777777777777776667777777777777778888888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
..++++.+.. +.+..++..++.++...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777776643 345667777777777888888888888877764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-13 Score=136.99 Aligned_cols=273 Identities=16% Similarity=0.082 Sum_probs=139.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 006154 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN----NVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HICP- 392 (658)
Q Consensus 322 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~- 392 (658)
.....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666677777788888888888777765322 2 245666777777777777777777766532 1111
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------HHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-GD----AYSYNILINYLCKSNN--------------------LAA 447 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 447 (658)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1334555666666677777777777766665321 11 2245555555555666 555
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 006154 448 AKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 448 A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 517 (658)
|...+.+.... +..| ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 55555544331 1000 1223444445555555555555555554432100 11 1134444445555555555
Q ss_pred HHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHH
Q 006154 518 AKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVN----KVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 518 a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~ 586 (658)
|...+++.....+. ...++..++..|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555544432211 133444455555555555555555554433100 001 2234444455555555555
Q ss_pred HHHHHHHHH
Q 006154 587 ARELMKVMI 595 (658)
Q Consensus 587 A~~~~~~~~ 595 (658)
|.+.+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=137.30 Aligned_cols=275 Identities=13% Similarity=0.056 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChh
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHWLFAEGDVEGALFVLSDMIDK----H-ICPDHF 395 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 395 (658)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445566677777777777777777765322 22 35666667777777777777777766542 1 111234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEH-----MVGDAYSYNILINYLCKSNN-----------------LAAAKQLLS 453 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~ 453 (658)
++..+...+...|++++|.+.+++..+.. ......++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555666666666666666666654431 01112244444455555555 444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL- 531 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 531 (658)
+..+.. .+.+. .....++..+...+...|++++|...+++..+..+.
T Consensus 208 ~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 432210 00000 001224444555555555555555555554443221
Q ss_pred -----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006154 532 -----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI--A---VNKVGYNILINFLCKFGCYQQARELMKVMILH---- 597 (658)
Q Consensus 532 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 597 (658)
...++..++..|...|++++|...+++..+... . ....++..+...+...|++++|.+.+++....
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 122555566666666666666666665543210 0 01344555666666666666666666665532
Q ss_pred CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 598 GII-PDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 598 g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+.. ....++..+...|.+.|++++|.+.+++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 100 0123455556666666666666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-13 Score=133.69 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=144.0
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCH----HHHHHHHHHHHhcCChhHHHHHHH
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATP----AVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
..+..++..+...|++++|...++++++. .+.++ .++..+..+|...|++++|.+.++
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh------------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34556778888889999999998888762 23333 467788888888999999999888
Q ss_pred HHHhC----C-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCC---------
Q 006154 171 KLKVK----G-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG-----YVENVNTFNLVIYALCKECK--------- 231 (658)
Q Consensus 171 ~~~~~----g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~g~--------- 231 (658)
+..+. + ......++..+...|...|++++|...+++..+.. .+....++..+...+...|+
T Consensus 111 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 111 HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 87653 1 12245667778888888888888888888876531 11224467777777778888
Q ss_pred --------HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC--CChhhHHHHH
Q 006154 232 --------LEEALSLYYRMLKS----GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL--PNSVTHNCII 296 (658)
Q Consensus 232 --------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~li 296 (658)
+++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++...+...... ....++..+.
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777777665432 1111 1235566666666777777777776663211110000 0012455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGI---D--CNVRTYATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
..+...|++++|...+++..+... . ....++..+...|...|++++|...+++..
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555566666666665555543210 0 012344444555555555555555555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-13 Score=133.23 Aligned_cols=300 Identities=15% Similarity=0.072 Sum_probs=219.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 006154 286 LPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN----VRTYATLIDGYARGGSSEEALRLCDEMVKR----GLMP 357 (658)
Q Consensus 286 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p 357 (658)
......+......+...|++++|...++++.+.+ +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667778888999999999999999998874 333 356788889999999999999999987543 2122
Q ss_pred -cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 006154 358 -NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC-PD----HFTYSILTKGLCRNGC--------------------VK 411 (658)
Q Consensus 358 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~ 411 (658)
...++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2446778888899999999999999999875322 12 3367778888888999 99
Q ss_pred HHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChH
Q 006154 412 QAFKLHNQVLEE----HM-VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPD----IITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 412 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~ 481 (658)
+|.+.+++..+. +. .....++..+...+...|++++|...+++..+... .++ ...+..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877653 11 11234678888899999999999999988775411 122 236777888899999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHH
Q 006154 482 GAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIA 550 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~ 550 (658)
+|...+++..+.... ++ ..++..+...+...|++++|...++++...... ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999888753111 11 456778888899999999999999988765332 2668888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHH
Q 006154 551 EAFAMFSEMRNV----GIAV-NKVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 551 ~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 586 (658)
+|...+++..+. +..+ ...++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987652 1111 13344555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.3e-13 Score=129.76 Aligned_cols=274 Identities=13% Similarity=0.073 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPN----NVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HIC-PDHFTY 397 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 397 (658)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455556666666666666666554221 1 234555555666666666666666554432 101 112234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
..+...+...|++++|.+.+++..+.... ++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 44444444555555555544444332100 0000 002234444455555
Q ss_pred cCC--------------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 477 GGN--------------------IEGAVQVYENMKKV----EK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 477 ~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
.|+ +++|...+++..+. +. ......+..+...+...|++++|...++++.+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555544321 11 111235666667777778888887777776544222
Q ss_pred ------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006154 532 ------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVN----KVGYNILINFLCKFGCYQQARELMKVMILH--- 597 (658)
Q Consensus 532 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 597 (658)
...++..++..+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 234778888888888999999888888764210 011 456778888899999999999999887753
Q ss_pred -CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 598 -GII-PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 598 -g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+-. ....++..+...+.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346777888889999999999999998874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-12 Score=110.61 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
+...|..+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|...++.+....+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3444555555555555555555555555554322 444555555555555556666555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
+...++++.|...+.+..... +.+...+..+..++.+.|++++|++.+++.++.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 556666666666655555532 2334455555556666666666666666655542 22344555555566666666666
Q ss_pred HHHHHHHHH
Q 006154 623 IELHDDMVL 631 (658)
Q Consensus 623 ~~~~~~m~~ 631 (658)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666555
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-11 Score=116.61 Aligned_cols=218 Identities=8% Similarity=0.031 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCR-------NGCV-------KQAFKLHNQVLEE-HMVGDAYSYNILINYLC 440 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 440 (658)
++|...|++++... +.+...|..++..+.. .|++ ++|...|++.++. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45555666665532 2244455555544432 3553 5566666655552 221 4445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDII-TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC-KDASLDAA 518 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 518 (658)
+.|++++|..+|+++++.... +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666655553211 122 455555555555566666666655555422 22333332222211 24555555
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG-IAV--NKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
..+|+.+.+..+.++..|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555531 233 23445555555555555555555555555
Q ss_pred Hc
Q 006154 596 LH 597 (658)
Q Consensus 596 ~~ 597 (658)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=109.78 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=113.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...|..+...+.+.|++++|++.|++.++... -+...+..+...+.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 445566666666666666666666666665532 24566666666677777777777777766654322 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.+...++++.|...+.++....+.+..++..++..|...|++++|++.|++..+.. +.+..+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 66777777777777777777777677777777777777777777777777777643 33566677777777777777777
Q ss_pred HHHHHHHHHc
Q 006154 588 RELMKVMILH 597 (658)
Q Consensus 588 ~~~~~~~~~~ 597 (658)
++.|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777777763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=124.44 Aligned_cols=233 Identities=7% Similarity=-0.077 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------ChhhHH
Q 006154 365 TIHWLFAEGDVEGALFVLSDMIDK----HICP-DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG------DAYSYN 433 (658)
Q Consensus 365 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 433 (658)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666666543 1111 12345555555666666666666655554421100 112334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIINGLCKD 512 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 512 (658)
.+...|...|++++|...+++..+... +.+.. ....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAE-------------------------------AEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH-------------------------------HcCChHHHHHHHHHHHHHHHHC
Confidence 444444444444444444444332100 00000 0012444455555555
Q ss_pred CCHHHHHHHHHHHHH-----cC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHHHHHhcC
Q 006154 513 ASLDAAKSLLQASQR-----IG-LLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 513 g~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g 582 (658)
|++++|...+++..+ .. +....++..++..|...|++++|...+++..+. +-+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 555555555555554 22 224555666666666666666666666655431 11111222455566666666
Q ss_pred C---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 583 C---YQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 583 ~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+ +++|+.++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555544 22222 33455566666677777777777766654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-12 Score=125.24 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=130.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKAT----PAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
.+...+..+...|++++|...++++++. .|.+ ..++..+...|...|++++|.+.+++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV------------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh------------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455667777788888888888877762 2223 35667777788888888888888877
Q ss_pred HHhC----CCc-cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCC----------
Q 006154 172 LKVK----GHS-VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY-VEN----VNTFNLVIYALCKECK---------- 231 (658)
Q Consensus 172 ~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~l~~~~~~~g~---------- 231 (658)
..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 69 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 6542 111 1245666777777778888888877777664210 011 3356666677777777
Q ss_pred ----------HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC--cCCChhhHHH
Q 006154 232 ----------LEEALSLYYRMLKS----GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS--VLPNSVTHNC 294 (658)
Q Consensus 232 ----------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 294 (658)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++........ ......++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 67777666665431 1111 12345555566666666666666666531111100 0001224445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGI-DCN----VRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555555443210 000 233444444444555555555444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-11 Score=113.43 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLC-------KSNNL-------AAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
++|...|+++++..+. +...|..++..+. +.|++ ++|..+|++.+..-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666777777665433 5666666666654 24664 7777777777763122245567777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH-HcCCHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF-INGKIAEAFA 554 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 554 (658)
.|++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|+++.+..+.+...|...+.... ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777764221 233 67777777777777777777777777766665555554443322 2577777777
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG-IIP--DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+|++..+.. +.+...|..++..+.+.|++++|..+|++++... +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776642 3356667777777777777777777777777652 344 355667777777777777777777777776
Q ss_pred C
Q 006154 632 S 632 (658)
Q Consensus 632 ~ 632 (658)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-12 Score=129.67 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL-AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
++++.+.++....... .+...+..+...+...|++ ++|++.|++..+... .+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445554443322 2455566666666666666 666666666655422 245566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc--------CCHHH
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCKD---------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN--------GKIAE 551 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 551 (658)
+..+. .|+...+..+...+... |++++|...++++.+..+.+...|..+..+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 66654 34456666666666666 7777777777777777666777777777777766 77777
Q ss_pred HHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 552 AFAMFSEMRNVGIA---VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 552 A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
|+..|++..+.. + .+...|..+..+|...|++++|++.|+++.+.. +.+...+..+...+...|++++|++.+.
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777776642 1 256667777777777777777777777776642 2244556666666666677776665443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=124.50 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=149.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CHHHHHH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-P-----NLVIYNS 504 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~~ 504 (658)
...+...|++++|...+++.... +-.+ ....+..+...|...|++++|+..+.+..+.... + ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1011 1234555666666667777776666665542111 1 1346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GI-AVNKVGYNI 573 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ 573 (658)
+...|...|++++|...++++.+..+. ...++..++..|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777888888888888888877654322 3458889999999999999999999999762 22 334677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMILH----GIIPDYVTYTTLVTRFSKNCS---PEEVIELHDDMVLSGVSPDN-QTYNAII 645 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 645 (658)
++..+.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+. ..+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 999999999999999999998753 112223345667778888999 77788777766 334433 6788899
Q ss_pred HHhhcCCCCCcC
Q 006154 646 SPLLGEKSAEDQ 657 (658)
Q Consensus 646 ~~~~~~g~~~~a 657 (658)
..+...|+.++|
T Consensus 347 ~~y~~~g~~~~A 358 (383)
T 3ulq_A 347 KYYHERKNFQKA 358 (383)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHCCCHHHH
Confidence 999999998876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-12 Score=128.37 Aligned_cols=213 Identities=10% Similarity=-0.022 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV-KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
+++++..+++.... .+.+...+..+...+...|++ ++|.+.+++.++..+. +...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666665543 234667777788888888888 8888888888877644 67788888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKG---------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD--------ASLD 516 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 516 (658)
+..+.. |+...+..+...+... |++++|+..+++..+... .+...+..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888753 5667778888888888 889999999998888643 3677888888888888 8899
Q ss_pred HHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 517 ~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 593 (658)
+|...++++.+..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999888 788999999999999999999999999998853 33566788888889999988888876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=123.88 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK-------GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC--- 210 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 210 (658)
..|....++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...+++.+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999873 33445677888999999999999999999998864
Q ss_pred ---CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 006154 211 ---GY-VENVNTFNLVIYALCKECKLEEALSLYYRMLKS------GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGV 279 (658)
Q Consensus 211 ---g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 279 (658)
+- +....++..+...+...|++++|.+.++++.+. +-.| ...++..+...+...|++++|...++++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 234567888888999999999999999988764 1122 344677788888888999999888888532
Q ss_pred cccC---C-cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 280 MSGD---S-VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 280 ~~~~---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
.... + .+....++..+...+...|++++|.+.++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 1 112245677777888888888888888887775
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=124.08 Aligned_cols=200 Identities=15% Similarity=0.068 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-C
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVR------GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV------EK-K 496 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~ 496 (658)
++..+...+...|++++|...+++.... +. +.....+..+...+...|++++|...++++.+. +. .
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444332 11 112334444555555555555555555555432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRI--------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV------ 562 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 562 (658)
.....+..+...+...|++++|...++++... .+....++..++..|...|++++|...++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12334555666666666666666666666554 1224556677777777777777777777777642
Q ss_pred -CCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 563 -GIAVNK-------VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 563 -~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...+.. ..+..+...+...+.+.+|...++..... .+.+..++..+...|.+.|++++|.+.+++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 11222233334445555566666666543 123455677788888888888888888888775
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-10 Score=115.79 Aligned_cols=228 Identities=10% Similarity=-0.038 Sum_probs=152.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHH
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEEHM-VG----DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG--L---IP-DIITYGT 469 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~p-~~~~~~~ 469 (658)
...+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344566777777777766654311 01 23456666777777777777777776665421 0 11 1345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCHhhHHHH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKV----EKK-PNLVIYNSIINGLCKDASLDAAKSLLQASQR-----IGLLDAITYNTL 539 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l 539 (658)
+...|...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++... ..+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 777788888888888888776642 111 1134667778888888888888888888877 544467788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC----CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVG----IAVNKVGYNILINFLCKFGC---YQQARELMKVMILHGIIPD-YVTYTTLVT 611 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 611 (658)
+..|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 899999999999999998887631 11123345666667777788 77777777652 22222 345667788
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 006154 612 RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999988875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-10 Score=110.35 Aligned_cols=298 Identities=12% Similarity=0.091 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----hhH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNV----VYNSTIHWLFAEGDVEGALFVLSDMIDKHIC-PDH----FTY 397 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~ 397 (658)
.......+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999999887764322222 4566677788889999999988887653111 121 235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEH----MV--G-DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI--P--DIIT 466 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p--~~~~ 466 (658)
..+...+...|++++|.+.+++..+.. .. | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888899999999888876532 11 2 2345566777888889999999988887764221 1 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC----HhhH
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYN-----SIINGLCKDASLDAAKSLLQASQRIGLLD----AITY 536 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 536 (658)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++......+.+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888999999988888765322211 11111 23344668888888888888876654431 2346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRN----VGIAVNK-VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
..+...+...|++++|...+++... .|..++. ..+..+..++...|+.++|...+++..... +. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 6777888888898888888887754 2222222 255667778888888888888888887531 11 11233
Q ss_pred HHHhCCChHHHHHHHHHHHHC
Q 006154 612 RFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 444455 6677777877764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-10 Score=113.41 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=151.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CChhhHH
Q 006154 365 TIHWLFAEGDVEGALFVLSDMIDKHI-CP----DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV------GDAYSYN 433 (658)
Q Consensus 365 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 433 (658)
....+...|++++|+..+++..+... .+ ...++..+...+...|++++|...+++..+.... ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777665311 11 2345666677777777777777777766543111 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKK-----VEKKPNLVIYN 503 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 503 (658)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|+..+++..+ ... ....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHH
Confidence 7777788888888888877776652 1111 124566677788888888888888888776 322 2366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLL-----DAITYNTLINGYFINGK---IAEAFAMFSEMRNVGIAVN-KVGYNIL 574 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 574 (658)
.+...+.+.|++++|...+++..+.... ....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888888888888888888888775432 23345666666777777 77777777652 22222 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...|...|++++|.+.++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-10 Score=110.52 Aligned_cols=299 Identities=13% Similarity=0.023 Sum_probs=207.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCcH----hH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNV----RTYATLIDGYARGGSSEEALRLCDEMVKRGL-MPNN----VV 361 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~ 361 (658)
........+...|++++|...+++.....-..+. .++..+...+...|++++|.+.+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556677899999999999998876422222 2456677888889999999999998765311 1122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----Chh
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDK----HIC--P-DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG----DAY 430 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~ 430 (658)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778888999999999999988753 221 2 23456667888899999999999999988754321 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--IITYG----TLIDGYCKGGNIEGAVQVYENMKKVEKKPN---LVI 501 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 501 (658)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998875421111 22111 233447789999999999998876433221 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGL----L--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
+..+...+...|++++|...++....... . ....+..+..++...|+.++|...+++..... +. ...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHH
Confidence 56777888899999999999988765422 1 22367777888999999999999999988742 11 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 006154 576 NFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3334444 5566666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-10 Score=105.00 Aligned_cols=207 Identities=12% Similarity=0.021 Sum_probs=159.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006154 427 GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 506 (658)
.++..+......+...|++++|...|++..+....++...+..+...+...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999998765467777777888999999999999999999986433 667888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDA-------ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN---KVGYNILIN 576 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 576 (658)
..+...|++++|...++++.+..+.+. ..|..+...+...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999999988877 56888888999999999999999999885 454 566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
+|...|+ ..++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++.
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 7765543 3445555442 23344444433 3345678999999999998 5666544444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-10 Score=100.81 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445555666666666666666665542 22455666666666677777777777777666666666677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776642 3455666667777777777777777777776652 33456666677777777777777777
Q ss_pred HHHHHH
Q 006154 626 HDDMVL 631 (658)
Q Consensus 626 ~~~m~~ 631 (658)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-10 Score=122.85 Aligned_cols=165 Identities=18% Similarity=0.094 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
..+++.+...+.+.|++++|++.|++.++... -+...+..+..+|.+.|++++|+..|++..+.... +...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34455555555555555555555555544321 13444444555555555555555555555443221 34444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|.+.++++.+..+.+..+|+.++.+|...|++++|++.|++.++.. +-+...+..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555555544455555555555555555555555555554431 112344444555555555555555
Q ss_pred HHHHHHHH
Q 006154 589 ELMKVMIL 596 (658)
Q Consensus 589 ~~~~~~~~ 596 (658)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-10 Score=98.64 Aligned_cols=164 Identities=15% Similarity=0.002 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC 510 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (658)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44555566666667777776666665542 2345666666667777777777777777766652 235566667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..|++++|...++++....+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777766677777777777777888888888887777653 34566777777778888888888888
Q ss_pred HHHHHHc
Q 006154 591 MKVMILH 597 (658)
Q Consensus 591 ~~~~~~~ 597 (658)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=121.94 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
+...++.+...+.+.|++++|++.|++.++..+. +..++..+...|.+.|++++|++.|++.++... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4567888888888888888888888888887654 677888888888888888888888888887632 25777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+.+.|++++|++.|++..+.... +...+..+...+...|++++|...++++.+..+.+..+|..++.+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888888876433 5678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 006154 553 FAMFSEMRN 561 (658)
Q Consensus 553 ~~~~~~~~~ 561 (658)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887766
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-10 Score=101.27 Aligned_cols=200 Identities=11% Similarity=0.019 Sum_probs=162.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
.|+..+......+...|++++|.+.|++..+..+.++...+..+..++...|++++|...+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 466788888999999999999999999999987656778888899999999999999999999998643 2567888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNL-------VIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLING 542 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 542 (658)
..+...|++++|+..+++..+..+. +. ..|..+...+...|++++|...++++.+..+. +..+|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999986432 44 45778888889999999999999999999988 88999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+. .|+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 87654 34556666543 23444444333 34556789999999999985 4543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-10 Score=106.49 Aligned_cols=129 Identities=10% Similarity=-0.012 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-----
Q 006154 501 IYNSIINGLCKD-ASLDAAKSLLQASQRIGLLD------AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK----- 568 (658)
Q Consensus 501 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 568 (658)
++..+...|... |++++|...+++..+..+.+ ..++..++..+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455556666664 77777776666665543321 345667777777777777777777777764322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hCCChHHHHHHHHHHHH
Q 006154 569 -VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV------TYTTLVTRFS--KNCSPEEVIELHDDMVL 631 (658)
Q Consensus 569 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 631 (658)
..|..++.++...|++++|+..+++..+. .|+.. .+..++.++. ..+++++|+..|+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 14556666777777777777777776642 33311 2333444443 34567777777766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=108.46 Aligned_cols=226 Identities=17% Similarity=0.066 Sum_probs=158.9
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 006154 405 CRNGCVKQAFKLHNQVLEE-------HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR------GLIP-DIITYGTL 470 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l 470 (658)
...|++++|..++++..+. ..+....++..+...+...|++++|...++++... +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766652 22234667888999999999999999999998864 2222 35677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHhh
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKV------E-KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI--------GLLDAIT 535 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 535 (658)
...+...|++++|...++++.+. . .+....++..+...+...|++++|...++++.+. .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1 1223567888889999999999999999998876 2336778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-hHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV-------GIAVN-KVGYNILINFLCKFGCYQ------QARELMKVMILHGIIP 601 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~g~~p 601 (658)
+..++..|...|++++|...++++.+. ...+. ...+..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 899999999999999999999998753 11222 333444444444333322 22222222111 1122
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...++..+...|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=108.98 Aligned_cols=226 Identities=13% Similarity=-0.007 Sum_probs=161.3
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDK-------HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE------HM-VGDAYSYNIL 435 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 435 (658)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766542 22334667888999999999999999999998865 21 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVR------GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV------EKKP-NLVI 501 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 501 (658)
...+...|++++|...+.+.... .. +.....+..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 11 223567788889999999999999999998864 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCHhhHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCC
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRI---------GLLDAITYNTLINGYFINGKIA------EAFAMFSEMRNVGIAV 566 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p 566 (658)
+..+...+...|++++|...++++.+. .+.....|..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998764 1224445555555544433322 22222222211 1122
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...++..++..|...|++++|.+.+++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355788899999999999999999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-09 Score=95.71 Aligned_cols=137 Identities=10% Similarity=-0.016 Sum_probs=88.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC- 583 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 583 (658)
+...+...|++++|...++++.+..|.+..++..++.++...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 66777777888888888887777777777777777888888888888888887777753 3346667777777655543
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 584 -YQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 584 -~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3344555554432 222233334445556667778888888887776 5677655554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-08 Score=91.65 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=113.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM-VGDAYSYNILINYLCKSNNLAAAKQLLSSMI 456 (658)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (658)
|+..++++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34455555667777777888888877777766554 2255666677777777888888888887776
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 457 VRGLIP-----DIITYGTLIDGYC--KGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 457 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
+. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2444445554422 223 777888888887654 34433333444467777888888877776554
Q ss_pred c----------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 528 I----------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 528 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
. .+.++.++..++......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 24467777555555555666 677777777774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-09 Score=101.45 Aligned_cols=170 Identities=9% Similarity=-0.060 Sum_probs=111.1
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICK-ATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
..|...+.++...|++++|...+++.++. ... . +.+ ....+|..+..+|.+.|++++|+..|++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~--------~~~----~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADY--------QKK----A-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHH--------HHH----T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHH----h-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555667778888999998888877651 110 0 111 124677888888888888888888888876
Q ss_pred hCCCcc-----CHHhHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 174 VKGHSV-----SIHAWNNFLSHLVKL-NEIGRFWKLYKEMVSCGYVE-N----VNTFNLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 174 ~~g~~~-----~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
+..... ...+++.+...|... |++++|+..|++.++..... + ..+++.+...+.+.|++++|+..|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 632110 134677777777775 88888888887777531100 1 345667777777778888888888777
Q ss_pred HhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 243 LKSGIWPNVV------CFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 243 ~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
.+........ .|..+..++...|++++|...|++.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7654332211 4556666777777777777777773
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-08 Score=90.93 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=124.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 006154 332 DGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVK 411 (658)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (658)
+-..-.|.+..++.- ..+.....+...-..+.++|...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344456777777662 22221111222333344666666665431 112222223333332 22222
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 412 QAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665544 23444445666667777777777777776655443 124455556666677777777777777777
Q ss_pred HhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 491 KKVEKKP-----NLVIYNSIINGLC--KDA--SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 491 ~~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+. .| +..+...+..++. ..| ++.+|..+|+++....+. ......+..++.+.|++++|.+.++.+.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 33 2444444444422 223 666777777776555442 11122222256666777777776665543
Q ss_pred CC---------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 562 VG---------IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 562 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.. -+.|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02244555455555555565 666666666663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-09 Score=85.41 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|..+++++.+..+.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555666666666666666666666655566666666667777777777777777766543 33455666666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777766642 23455666666777777777777777777665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-07 Score=97.40 Aligned_cols=376 Identities=10% Similarity=-0.000 Sum_probs=201.2
Q ss_pred hcC-ChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHH
Q 006154 158 QIG-ATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK-LEEA 235 (658)
Q Consensus 158 ~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A 235 (658)
+.| +++.|..+|+.+.+. -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 457 488899999888774 222 8999999999999985 4799999988887777663 4567
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH---hcCChH
Q 006154 236 LSLYYRMLKS-GIWP-NVVCFNMIINEAC----QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC---KLGRVE 306 (658)
Q Consensus 236 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~ 306 (658)
..+|+..+.. |..| +...|...+..+. ..|+.+.+.++|++. .. +++. .+..+-..|. +.....
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA---L~--~P~~--~~~~lw~~Y~~fE~~~~~~ 140 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA---LQ--TPMG--SLSELWKDFENFELELNKI 140 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH---HT--SCCT--THHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH---Hh--Chhh--hHHHHHHHHHHHHHHhccc
Confidence 7788887653 4333 4456666666543 245678888999884 33 2211 1122222221 111122
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcC--C-----HHHHH
Q 006154 307 FAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEG--D-----VEGAL 379 (658)
Q Consensus 307 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g--~-----~~~a~ 379 (658)
.+.++..+.. +.+..|..+++++...-...+...|...+..-...+ - .+.+.
T Consensus 141 ~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 141 TGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred cHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 2222222211 123334444433332100012334444444322211 0 23455
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006154 380 FVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG 459 (658)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (658)
.+|++++... +.+...|...+..+.+.|+.++|.+++++.... + .+...+.. |....+.++. ++.+.+.-
T Consensus 200 ~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~---~~~l~~~~ 269 (493)
T 2uy1_A 200 FIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAV---YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHH---HHHHHHHT
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHH---HHHHHHHH
Confidence 6777776642 334666666666677777888888888877776 2 23222221 2211111111 22221110
Q ss_pred ---------CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006154 460 ---------LIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK-DASLDAAKSLLQASQ 526 (658)
Q Consensus 460 ---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 526 (658)
..+ ....|...+....+.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 000 1233445555555566777777777777 32 12233344322222222 235777777777777
Q ss_pred HcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 527 RIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 527 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+.++..+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7665566666666776677777777777777762 1355566666666667777777777776663
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-09 Score=98.09 Aligned_cols=133 Identities=10% Similarity=-0.057 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD---IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-P-NLVIY 502 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~ 502 (658)
+...+..+...+.+.|++++|...|++++..... + ...+..+..++.+.|++++|+..|+++.+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666667777777777777777777765321 2 455666677777777777777777777765321 1 23455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCHhhH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 006154 503 NSIINGLCK--------DASLDAAKSLLQASQRIGLLDAITY-----------------NTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 503 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 557 (658)
..+..++.. .|++++|...|+++.+..|.+.... ..++..|...|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 566666666 7777777777777777766644444 233444445555555555555
Q ss_pred HHHH
Q 006154 558 EMRN 561 (658)
Q Consensus 558 ~~~~ 561 (658)
++.+
T Consensus 173 ~~l~ 176 (261)
T 3qky_A 173 AVFD 176 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=92.47 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
.+...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|...++++.+..|.+..+|..++..|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 4778889999999999999999987433 778899999999999999999999999999999999999999999877664
Q ss_pred --HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 549 --IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 549 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
.+.+...++.... ..|....+..+..++...|++++|+..|+++++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3445566665543 233333445566777888999999999999997 467765544433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-07 Score=93.49 Aligned_cols=377 Identities=14% Similarity=0.039 Sum_probs=225.0
Q ss_pred hcC-CHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 006154 193 KLN-EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD-LEFA 270 (658)
Q Consensus 193 ~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A 270 (658)
+.| +++.|+.+|+.++.. -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887764 233 8899999999998875 4788888888887776663 3456
Q ss_pred HHHHHHhcccccCCcC-CChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChHH
Q 006154 271 LKLFRKMGVMSGDSVL-PNSVTHNCIINGFC----KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA---RGGSSEE 342 (658)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~ 342 (658)
..+|+.. +..-|.. .+...|...+..+. ..|+.+.+.++|++.... ++. .+..+-..|. +......
T Consensus 68 ~~~fe~a--l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 68 YEVYEFT--LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKIT 141 (493)
T ss_dssp HHHHHHH--HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHH--HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhcccc
Confidence 6677764 2222322 24566666666543 235677888888888863 221 1122222221 1111222
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--C-----hHHHHH
Q 006154 343 ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG--C-----VKQAFK 415 (658)
Q Consensus 343 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~ 415 (658)
+.+++.+.. +.+..|...++++...-...+...|...+..-...+ - .+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222222211 123333433433332100012334444444322211 1 345677
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE- 494 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 494 (658)
+|++++...+. +...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 201 IHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHH
Confidence 89988886544 6788888899999999999999999999987 33332222 22222222222 22222210
Q ss_pred --------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHC
Q 006154 495 --------K---KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING-KIAEAFAMFSEMRNV 562 (658)
Q Consensus 495 --------~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 562 (658)
. .....+|...+....+.++.+.|..+|+.+ .....+...|...+..-...+ +.+.|..+|+...+.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 111245666677666788899999999999 322224455544333333333 699999999999875
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 563 GIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 563 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
. +.+...+...++...+.|+.+.|..+|+++. .....|..++..-...|+.+.+..+++++.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 3335556667888889999999999999972 2577888888877788999999999988875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=83.15 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++....+.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 44555566666777777777766665432 24556666666667777777777777777766666666777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777776643 334566677777777777777777777777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=95.03 Aligned_cols=185 Identities=8% Similarity=-0.051 Sum_probs=114.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-ChhhH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-G-DAYSY 432 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~ 432 (658)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+++++..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666777777777777777777765322 2 455666666777777777777777777765432 1 13345
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 006154 433 NILINYLCK--------SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNS 504 (658)
Q Consensus 433 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 504 (658)
..+..++.. .|++++|...|++++..... +......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 555666666 66777777777666654221 1111111100 0000000 0111356
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFIN----------GKIAEAFAMFSEMRNV 562 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 562 (658)
+...+...|++++|...++.+.+..|. ....+..++.+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 677788889999999999998887776 455777888888766 8888888888888874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-07 Score=87.57 Aligned_cols=231 Identities=12% Similarity=0.030 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN--NLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKG---GNIE 481 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g~~~ 481 (658)
++|+++.+.++..++. +..+|+.--..+...+ +++++++.++.++..... +...|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666655443 4445555555555555 666666666666654332 333333322222 233 5666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC------HHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD--AAKSLLQASQRIGLLDAITYNTLINGYFINGK------IAEAF 553 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~ 553 (658)
+++.+++++.+...+ +..+|..-...+...|.++ ++.+.++++.+..+.+..+|+.....+...|+ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665333 5555555555555566655 66666677766666666666666666655555 66677
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ-ARELMKVMILHG--IIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..+...+.+.|+.++|.+.++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7776666653 3456666666666666665333 344555444322 12355666666667777777777777777766
Q ss_pred HCCCCCC-HHHHHHHHH
Q 006154 631 LSGVSPD-NQTYNAIIS 646 (658)
Q Consensus 631 ~~g~~p~-~~~~~~l~~ 646 (658)
++ +.|- ...|+...+
T Consensus 286 ~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 286 SK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HT-TCGGGHHHHHHHHH
T ss_pred hc-cChHHHHHHHHHHh
Confidence 53 3333 344444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-07 Score=87.80 Aligned_cols=224 Identities=8% Similarity=-0.026 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNG--CVKQAFKLHNQVLEEHMVGDAYSYNILINYL----CKS---NNLA 446 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 446 (658)
++|+.+++.++..++. +...++.-...+...| +++++++.++.++..+++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3455555554443222 2233343334444444 555566666555555443 344444333333 333 5666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 006154 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE--GAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS------LDAA 518 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a 518 (658)
+++.+++.+.+... -+...|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 66677766666533 25566665555556666666 777777777765443 55566555555555555 7888
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAE-AFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+.++.+....+.|..+|+.+...+.+.|+..+ +..+..++.+.+ -+.+...+..++..|.+.|+.++|+++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888888888888888888888888887444 444555554432 13466778888888888899999999999887
Q ss_pred HcCCCCCHH
Q 006154 596 LHGIIPDYV 604 (658)
Q Consensus 596 ~~g~~p~~~ 604 (658)
+. +.|-..
T Consensus 286 ~~-~Dpir~ 293 (306)
T 3dra_A 286 SK-YNPIRS 293 (306)
T ss_dssp HT-TCGGGH
T ss_pred hc-cChHHH
Confidence 63 344433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=9e-08 Score=86.45 Aligned_cols=174 Identities=16% Similarity=-0.003 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG----NIEGAVQVYE 488 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 488 (658)
|.+.|++..+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444455555555555555555555555442 33344444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFI----NGKIAEAFAMFSE 558 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 558 (658)
+..+.+ +...+..+...|.. .+++++|...+++..+.++. .+.++..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33444444444443 44555555555555554432 24555555555555 4555555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 006154 559 MRNVGIAVNKVGYNILINFLCKF-G-----CYQQARELMKVMILHG 598 (658)
Q Consensus 559 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 598 (658)
..+. +.+...+..|...|... | ++++|+..+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5553 12333444444444432 2 5555555555555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=110.05 Aligned_cols=173 Identities=9% Similarity=-0.102 Sum_probs=130.0
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 405 CRNGCVKQAFKLHNQVL--------EEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
...|++++|++.+++.. +..+. +...+..+...+...|++++|...++++.+... .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56778888888888877 43322 566777778888888888888888888877532 356777778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.|++++|+..|++..+.... +...+..+..++...|++++ ...++++.+..+.+..+|..+..++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888876433 56777788888888888888 88888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHHhcCC
Q 006154 557 SEMRNVGIAVN-KVGYNILINFLCKFGC 583 (658)
Q Consensus 557 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 583 (658)
+++.+. .|+ ...+..+..++...|+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888774 344 5566667777665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.4e-09 Score=90.24 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=101.2
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
+.+...+..+.+.|++++|...++++++ ..|.++.++..+..++.+.|++++|...+++..+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3556667777777888888777777665 3556677777777788888888888888777766
Q ss_pred CCCccCHHhHHHHHHH-HHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-Chh
Q 006154 175 KGHSVSIHAWNNFLSH-LVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP-NVV 252 (658)
Q Consensus 175 ~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 252 (658)
..+ ++..+..+... +...+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+..+.+ +..
T Consensus 69 ~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 69 EYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred ccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 533 44333222211 112223334566666666543 2346666667777777777777777777776654322 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 253 CFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.+..+...+...|+.++|...|++
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666666677777777777766665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=85.79 Aligned_cols=185 Identities=11% Similarity=-0.009 Sum_probs=115.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI-PD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL--VIYN 503 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 503 (658)
+...+..+...+.+.|++++|...|+++...... |. ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667778888888888888888775322 11 345666777888888888888888888775333111 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 504 SIINGLCK------------------DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 504 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
.+..++.. .|++++|...|+++.+..|.+..++......... ...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----------~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----------KDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHHH-----
Confidence 44444433 3455556666665555555443333221110000 00000
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD----YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134567788999999999999999875 333 246777888899999999999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=85.43 Aligned_cols=178 Identities=11% Similarity=-0.015 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA----SLDAAKSL 521 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 521 (658)
.+|.+.|++..+.| +...+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888888764 77888888899999999999999999999864 66777788888877 6 89999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIA-VNKVGYNILINFLCK----FGCYQQARELMK 592 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 592 (658)
|++..+.+ ++.++..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|++.|+
T Consensus 76 ~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 76 AEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99997765 78889999999987 88999999999999987521 126788899999998 889999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHCCC
Q 006154 593 VMILHGIIPDYVTYTTLVTRFSKN-C-----SPEEVIELHDDMVLSGV 634 (658)
Q Consensus 593 ~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 634 (658)
+..+. .++...+..+...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99986 23455677777777653 3 89999999999998874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-09 Score=88.97 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.|++++|+..+........ -+...+..+...|.+.|++++|.+.++++.+..|.++.+|..++.+|...|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3444444444444433211 112233334444444444444444444444444444444444444444444555554444
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 557 SEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 557 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
++..+.. +-+...+..+...|.+.|++++|
T Consensus 89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Confidence 4444421 11234444444444444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=109.31 Aligned_cols=176 Identities=9% Similarity=-0.080 Sum_probs=138.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 440 CKSNNLAAAKQLLSSMI--------VRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|++++|++.+++.. +. .+.+...+..+...+.+.|++++|+..|+++.+.... +...+..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67889999999999887 33 2335667778888888999999999999998876433 67788888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.|++++|...|+++.+..+.+...|..+..+|.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999988888899999999999999999 99999988853 345678888999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCChHH
Q 006154 592 KVMILHGIIPD-YVTYTTLVTRFSKNCSPEE 621 (658)
Q Consensus 592 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 621 (658)
+++.+. .|+ ...+..+..++...|+.++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCC
Confidence 988764 455 4566667777766666333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=88.24 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LC 510 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 510 (658)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..++++.+... +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 44455556666777777776666554321 2455666666667777777777777766655422 33322221111 11
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
..+....|...+++..+..|.+...+..+...+...|++++|...|+++.+....+ +...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22223346777777777777777777788888888888888888888777754222 24567777777777788777777
Q ss_pred HHHHHHH
Q 006154 590 LMKVMIL 596 (658)
Q Consensus 590 ~~~~~~~ 596 (658)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-07 Score=85.95 Aligned_cols=186 Identities=11% Similarity=-0.024 Sum_probs=130.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGD--AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI--ITYG 468 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~ 468 (658)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566677888999999999999999998754322 357788899999999999999999999986433211 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 469 TLIDGYCK------------------GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL 530 (658)
Q Consensus 469 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 530 (658)
.+..++.. .|++++|+..|+++.+..+. +..........- .+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~------ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDR------ 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHH------
Confidence 44555543 57899999999999986332 232222211110 00000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 531 LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK----VGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
.......++..|.+.|++++|+..|+++.+. .|+. ..+..++.++.+.|+.++|++.++.+...+
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1112235677888899999999999999874 2432 457788899999999999999999888753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.2e-09 Score=87.77 Aligned_cols=145 Identities=12% Similarity=-0.040 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
|...+...|++++|...++......+.++..+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 34455677899999999999888777788888899999999999999999999999864 44688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHhhcCCC
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL-HDDMVLSGVSPD-NQTYNAIISPLLGEKS 653 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 653 (658)
++|+..|++.++.. +-+...|..+...|.+.|++++|.+. +++..+ +.|+ ..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999863 23577899999999999999876665 688887 4564 4667766666666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-08 Score=92.93 Aligned_cols=165 Identities=13% Similarity=-0.000 Sum_probs=108.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYN-SII 506 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 506 (658)
+...+..+...+...|++++|...+++...... .+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 444555666667777777777777777766532 255666667777777777777777777766542 3333222 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 585 (658)
..+...++.++|...+++.....|.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 234556666777777777777777777777777777777777777777777777643111 1456677777777777777
Q ss_pred HHHHHHHHHH
Q 006154 586 QARELMKVMI 595 (658)
Q Consensus 586 ~A~~~~~~~~ 595 (658)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-08 Score=92.83 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=122.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGT-LI 471 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-li 471 (658)
+...+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4455666667777788888888888888777654 66777778888888888888888888776643 34332222 22
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HhhHHHHHHHHHHcCCH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD--AITYNTLINGYFINGKI 549 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 549 (658)
..+.+.++.++|+..+++..+..+ .+...+..+...+...|++++|...+.++.+..+.+ ...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 335566777888888888877643 367788888888888888888888888888887774 77888888888888888
Q ss_pred HHHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRN 561 (658)
Q Consensus 550 ~~A~~~~~~~~~ 561 (658)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-08 Score=102.33 Aligned_cols=154 Identities=10% Similarity=0.012 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 521 (658)
.|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788889999988877532 3577888888888899999999999999888643 3677888888889999999999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF---GCYQQARELMKVMILHG 598 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g 598 (658)
++++.+..+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999998888888899999999999999999999999988753 34567788888888888 99999999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.6e-08 Score=92.73 Aligned_cols=128 Identities=13% Similarity=-0.046 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEK---KP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
|..+...|.+.|++++|+..|++..+... .+ ...++..+...|.. |++++|...+++.....+. ...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 34444455555555555555554433200 01 12344555555555 6666666666665543221 1345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+..+...|...|++++|+..|++..+. +..+. ...+..++.++...|++++|+..+++..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666777777777777777666542 11111 1244555556666677777777777766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=100.00 Aligned_cols=165 Identities=8% Similarity=-0.063 Sum_probs=127.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999887544 678899999999999999999999999998643 3678889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---GKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 563 (658)
+++..+... .+...+..+...+...|++++|.+.++++.+..+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999998643 36788999999999999999999999999999998999999999999999 99999999999998864
Q ss_pred CCCChHHHHHHH
Q 006154 564 IAVNKVGYNILI 575 (658)
Q Consensus 564 ~~p~~~~~~~l~ 575 (658)
+.+...|..+.
T Consensus 159 -p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 -VGAVEPFAFLS 169 (568)
T ss_dssp -CCCSCHHHHTT
T ss_pred -CcccChHHHhC
Confidence 22344444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-07 Score=80.56 Aligned_cols=124 Identities=14% Similarity=-0.003 Sum_probs=72.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++++....+.+..+|..++.+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 33444555566666666655542 33555566666666666666666666666666555566666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 549 IAEAFAMFSEMRNVGIAVNK----------------VGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+++|...|+++.+.. +.+. ..+..+..++.+.|++++|.+.++++.+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666665532 1111 45556666666666666666666666653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-06 Score=79.50 Aligned_cols=218 Identities=10% Similarity=0.063 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKG-G-NIEGAVQVY 487 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~ 487 (658)
++|+++++.++..++. +..+|+.--..+...| .+++++..++.+.....+ +...|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4555555555555433 4444544444444445 355555555555554322 444444444444433 4 555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC-------HHHH
Q 006154 488 ENMKKVEKKPNLVIYNSIINGLCKDASLD--------AAKSLLQASQRIGLLDAITYNTLINGYFINGK-------IAEA 552 (658)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A 552 (658)
+++.+...+ +...|+.-...+...|.++ ++.+.++++.+..+.|..+|+.....+.+.++ ++++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 555554322 4444444333333333333 56666666666666666666666666555554 4566
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHHHH
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLCKFGCY--------------------QQARELMKVMILHG-----IIPDYVTYT 607 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~~~~~~ 607 (658)
++.+++++... +-|...|+.+-..+.+.|+. ....++...+...+ -.++...+.
T Consensus 228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 66666665542 33455555555555554432 22222222222211 124566677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 608 TLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++..|...|+.++|.++++.+.++
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7777777777777788877777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-06 Score=81.39 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL-----VIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++++...... ...+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455666777777777777776664322111 12333455566777888888888877754332 1457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV-GIAVN-----KVGYNILINFLCKFGCYQQARELMKVMILHG----IIP-DYV 604 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~ 604 (658)
|+.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|++.+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888888888888887621 01122 2577888888889999999999888877531 111 156
Q ss_pred HHHHHHHHHHhCCChHHH-HHHHHHHHH
Q 006154 605 TYTTLVTRFSKNCSPEEV-IELHDDMVL 631 (658)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 631 (658)
+|..+...|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 777888888889999888 776777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.7e-06 Score=77.75 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH------
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS-N-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE------ 481 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------ 481 (658)
+++++++++.++..+++ +..+|+.-...+.+. + ++++++++++++.+... -+...|+.-.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhh
Confidence 45555555555544433 444444444444433 3 45555555555554422 24444444333333333333
Q ss_pred --HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH---
Q 006154 482 --GAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS-------LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI--- 549 (658)
Q Consensus 482 --~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 549 (658)
++++.++++.+..+. |...|+.....+.+.++ ++++.+.++++....+.|..+|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 666777777665433 56666666666655554 67788888888888888888888877777766653
Q ss_pred -----------------HHHHHHHHHHHHCC-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006154 550 -----------------AEAFAMFSEMRNVG-----IAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 550 -----------------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
.+......++...+ -.++...+..+++.|...|+.++|.++++.+.+. ..|-..-|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~y 339 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGY 339 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHH
Confidence 22222222222221 1356777888899999999999999999998754 44544433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-06 Score=80.24 Aligned_cols=162 Identities=14% Similarity=0.015 Sum_probs=116.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C----HhhHHH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEK-KPNL----VIYNSIINGLCKDASLDAAKSLLQASQRIGLL--D----AITYNT 538 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~~~~~ 538 (658)
.+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++...... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776422 1221 12334566666777888888888888875433 2 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRN----V-GIAVN-KVGYNILINFLCKFGCYQQARELMKVMILH----GIIPD-YVTYT 607 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 607 (658)
++..|...|++++|...++++.+ . +..+. ..++..++..|.+.|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999988874 1 11222 336788889999999999999999887743 22222 56788
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHH
Q 006154 608 TLVTRFSKNCS-PEEVIELHDDMVL 631 (658)
Q Consensus 608 ~l~~~~~~~g~-~~~A~~~~~~m~~ 631 (658)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999994 6999998888765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-06 Score=80.40 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGL-IPDI----ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNS 504 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 504 (658)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776422 1221 12334556666778899999999988874322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----c--CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-hHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQR----I--GLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN----VGIAVN-KVGYN 572 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~ 572 (658)
+...|...|++++|...++++.+ . ... ...++..++..|.+.|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999988874 1 111 455888999999999999999999998865 222222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 006154 573 ILINFLCKFG-CYQQARELMKVMIL 596 (658)
Q Consensus 573 ~l~~~~~~~g-~~~~A~~~~~~~~~ 596 (658)
.+..++.+.| ++++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999988774
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-07 Score=75.31 Aligned_cols=96 Identities=16% Similarity=0.073 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
..+...+..|.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344444455555555555555555554432 2234444555555555555555555555555431 12344445555555
Q ss_pred HhCCChHHHHHHHHHHHH
Q 006154 614 SKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~ 631 (658)
...|++++|.+.|++.++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-06 Score=80.56 Aligned_cols=166 Identities=11% Similarity=0.022 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--HH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-----ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK---PN--LV 500 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~ 500 (658)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677788888888888777665322111 12334555667788999999999888754221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-Ch
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQ---RIGLL----DAITYNTLINGYFINGKIAEAFAMFSEMRNVG----IAV-NK 568 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 568 (658)
+++.+...|...|++++|...++++. +..+. ...++..++..|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888889999999999999999887 33332 22688899999999999999999999886521 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQA-RELMKVMIL 596 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 596 (658)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777877663
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-07 Score=73.77 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+......+.+.|++++|...|+++.+..|.+..+|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 455566667777777777777777777777777777777777777777777777777776643 3345667777777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|++++|++.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777777777777764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-07 Score=76.32 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+..+...+...|++++|...++++....+.+..++..++..+...|++++|...+++..+.. +.+...+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666777777777777777777666642 3345566666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCChHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTT--LVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.|++++|.+.++++.+.. +.+...+.. .+..+.+.|++++|.+.+++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777766542 123333322 2233556677777777666554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.8e-07 Score=76.05 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
..+..+...+...|++++|...|+++....|.++..|..+..+|...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3555566666677777777777777777777677777777777777777777777777776643 334566667777777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006154 580 KFGCYQQARELMKVMILH 597 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~ 597 (658)
+.|++++|+..|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-06 Score=78.15 Aligned_cols=127 Identities=11% Similarity=-0.086 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|+..+++..+.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556666777777777776553 3466667777777777777777777777776653 2355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 512 DASLDAAKSLLQASQRIGLLDA----------------ITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.|++++|...++++.+..+.+. .++..++.+|...|++++|...|+++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777777655433 778888888888899999988888888753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-06 Score=75.13 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+..+.+...+..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455666677778888888888888777532 356777788888888888888888888888887778888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNI--LINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
..|++++|...++++.+.. +.+...+.. ++..+...|++++|++.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887753 234444433 33446777888888888876653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=77.50 Aligned_cols=103 Identities=9% Similarity=-0.049 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.++.++..+...+.+.|++++|.+.|++..+..+. ++..|..+..+|.+.|++++|+..|++.++.. +.+...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 34556678888888999999999999999998887543 78888888889999999999999999988764 34567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
.+..++.+.|++++|...|++.++.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999888876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=89.13 Aligned_cols=100 Identities=7% Similarity=-0.062 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
.+...+..+...+.+.|++++|...|++..+..+. +...|..+...|.+.|++++|...+++.++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566777788888888888888888888776432 67777778888888888888888888877753 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006154 224 YALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888888888777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=80.34 Aligned_cols=139 Identities=7% Similarity=-0.089 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLC 579 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 579 (658)
...+...+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34456667777888888888877776665555 66666677888888888888887555421 111 235667777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 580 KFGCYQQARELMKVMILHGIIPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
..|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 88888888888888775332243 33555666677788888888888888887 45664444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-07 Score=81.11 Aligned_cols=133 Identities=12% Similarity=-0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRI------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-- 566 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-- 566 (658)
...+..+...+...|++++|...+++.... .+....++..+...+...|++++|...+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444555555555555555544431 1113445555666666666666666666555431 1011
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMILHG---IIPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
....+..+...+...|++++|...+++..... -.+. ..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12335555666666666666666666655320 0111 12344555566666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-07 Score=80.13 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=68.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH-HHHcCCH--HHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING-YFINGKI--AEA 552 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 552 (658)
..|++++|+..+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44566666666666555422 2455566666666666666666666666666655566666666666 5566665 666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...++++.+.. +.+...+..+...+...|++++|+..++++.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665542 223455555666666666666666666666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=84.23 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=110.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
.|...+.++...|++++|...+.+.++. ...+ ........+|..+..+|.+.|++++|...|++..+.
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~--------~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 105 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEA--------HANN----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHT----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHc----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4555567778888999998888877652 1100 001112356777888888889999999888887653
Q ss_pred ----CCcc-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 176 ----GHSV-SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV----E-NVNTFNLVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 176 ----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
|-.. ...+++.+...|.. |++++|+..|++.+..... . ...+++.+...+.+.|++++|+..|++..+.
T Consensus 106 ~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 106 YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2111 23567777777777 8888888888887753110 0 1456777777888888888888888877653
Q ss_pred ----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 246 ----GIWPN-VVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 246 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
+..+. ..++..+..++...|++++|...|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 125555666666778888888888774
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-05 Score=74.74 Aligned_cols=185 Identities=9% Similarity=-0.018 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS-LDAAKSLL 522 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 522 (658)
++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++++.+.... |...|+.-...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4445555555443222 4444444444444444 245555555555554332 44444444444444454 35555555
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-------
Q 006154 523 QASQRIGLLDAITYNTLINGYFIN--------------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF------- 581 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 581 (658)
+.+.+..+.|..+|+.....+... +.++++++.+++..... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence 555555555555555555444443 33555666666655532 33444554444444333
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 582 ----GCYQQARELMKVMILHGIIPDYVTYTTLVT-----RFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 582 ----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++.+ +.|..
T Consensus 248 ~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred hHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 3467777777777764 4443 2322111 12235667777778888776 45544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=69.57 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|...++++....+.+..++..++..+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444444444433344444444444444444444444444444321 22333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=76.58 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=76.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
.++++.+.. +.+...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|+..|+++.... +
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444431 11344556666777777777777777777777777777777777777777777777777777777643 3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+...+..+..++...|++++|++.|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=70.28 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+...|++++|...++++....+.+...+..++..+...|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 333333444444444444444444333344444444444444444444444444443321 1223333444444444444
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|.+.+++..+
T Consensus 96 ~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 96 HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-06 Score=70.59 Aligned_cols=122 Identities=12% Similarity=0.006 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+.++..+..+...+.+.|++++|.+.|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 4566778888999999999999999999999988643 367888888888999999999999999988764 34677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 265 (658)
.+...+.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 8888888999999999999988775322 3445556666555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-06 Score=70.31 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+...|++++|+..+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444455555555555555444321 134444444444445555555555555554444444444555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRN 561 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~ 561 (658)
..|++++|...+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=78.66 Aligned_cols=187 Identities=9% Similarity=-0.078 Sum_probs=129.0
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCCcC---------------
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNF-------LSHLVKLNEIGRFWKLYKEMVSCGYVEN--------------- 215 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------- 215 (658)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..++...++.-+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987544 67788877 5666666666666666665554 1121
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 216 -------VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 216 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+. ..... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~---a~~~~-d~~ 168 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKS---AGKWP-DKF 168 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTT---GGGCS-CHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHH---hhccC-Ccc
Confidence 2234445667778889999999888877653 4433555666678888888888888876 33221 111
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006154 289 --SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKR 353 (658)
Q Consensus 289 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (658)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23567777888888888888888888874332143 335556667777888888888888888776
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-06 Score=67.88 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3445555566666666666666666666542 224556666666666677777777777776666666666667777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
...|++++|...++++.+.. +.+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77777777777777766642 223444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-07 Score=76.26 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+...|++++|+..|++..+..+ .+...+..+..++...|++++|...++++....+.++..+..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33344445555555555555555544322 24444445555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRN 561 (658)
Q Consensus 547 g~~~~A~~~~~~~~~ 561 (658)
|++++|...|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=6e-07 Score=78.38 Aligned_cols=119 Identities=12% Similarity=0.188 Sum_probs=59.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LCKDASL--DA 517 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 517 (658)
..|++++|...+++...... .+...+..+...|...|++++|+..|+++.+... .+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 34455555555555544321 2444555555555555555555555555554322 134444444444 4455555 55
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
|...++++.+..+.+...+..++..|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=6.1e-07 Score=84.93 Aligned_cols=193 Identities=13% Similarity=-0.028 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+.+.|++++|...|++.+.... .+...+..+...+.+.|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34455555566666666666666666655422 2455566666666666666666666666665422 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|...++++.+..+.+...+...+....+. .++.. +........+++......+... ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 66666777776666666655443222222122111111 11111 1122222234444443333322 256777777
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHhC-CChHHHHHHHHHHHH
Q 006154 589 ELMKVMILHGIIPDYVTY-TTLVTRFSKN-CSPEEVIELHDDMVL 631 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~m~~ 631 (658)
+.++++.+. .|+.... ..+...+.+. +.+++|.++|.++.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766653 4443332 3333333333 556777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=70.68 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+...+.+.|++++|...|+++.+..|.+..+|..+..+|...|++++|+..+++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555555555555555544444455555555555555555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-05 Score=72.66 Aligned_cols=193 Identities=9% Similarity=-0.042 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN--NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN-IEGAVQV 486 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 486 (658)
+++++.+++.++..+++ +..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555566666555444 5555555555555555 356666666666665332 55555555555555555 4666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc------
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKD--------------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN------ 546 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 546 (658)
++++++..+. |...|+.....+... +.++++.+.+..+....|.|..+|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 6666665433 455554444444333 4577888888888888888888888666655555
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 006154 547 -----GKIAEAFAMFSEMRNVGIAVNKVGYNILIN-----FLCKFGCYQQARELMKVMILHGIIPDYV-TYTTLV 610 (658)
Q Consensus 547 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 610 (658)
+.++++++.++++.+. .|+. .|..+.- +....|..+++...+.++++. .|-.. -|.-+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~ 316 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR 316 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHH
Confidence 4578999999999884 4554 3432222 222457788899999999874 45433 344433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=71.18 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=90.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG--IIPD----YVT 605 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~ 605 (658)
...++..++..+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34577889999999999999999999999864 4457889999999999999999999999998642 1111 246
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 606 YTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
|..+..++...|++++|++.|++.++ ..||..+...|
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77788889999999999999999987 46777665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-06 Score=69.43 Aligned_cols=118 Identities=17% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++......+.+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445556666667777777777777766642 225566667777777777777777777777777666777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777776643 2345566666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-06 Score=82.73 Aligned_cols=129 Identities=13% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--------------LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
.+..+...+.+.|++++|+..|++..+...... ...+..+..++.+.|++++|...++++.+..+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444555555555555555555554322211 356677777777777777777777777777777
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA-RELMKVMI 595 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 595 (658)
+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888888887777743 33456677777777777777777 44555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-06 Score=74.06 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCc-
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK----GH-SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC----GYVE- 214 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~- 214 (658)
...++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|...+++..+. +-.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4455666666666666666666666665541 11 112344555555555666666666555555432 1011
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 215 -NVNTFNLVIYALCKECKLEEALSLYYRML 243 (658)
Q Consensus 215 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 243 (658)
....+..+...+...|++++|...+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12334445555555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-06 Score=82.80 Aligned_cols=151 Identities=11% Similarity=-0.045 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HhhHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD---------------AITYNTLING 542 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~ 542 (658)
+++++|+..++...+.. +-+...+..+...+.+.|++++|...|+++....+.+ ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444333211 1145677888899999999999999999999998876 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+...+.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 4468889999999999999999999999999863 33577888888899999999988
Q ss_pred -HHHHHHHHH
Q 006154 623 -IELHDDMVL 631 (658)
Q Consensus 623 -~~~~~~m~~ 631 (658)
...+++|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 556777754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-06 Score=68.18 Aligned_cols=94 Identities=12% Similarity=-0.079 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|...+++..+..+.+...|..++.+|...|++++|+..+++..+.. +.+...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|++.+++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.9e-07 Score=74.66 Aligned_cols=98 Identities=13% Similarity=-0.062 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
...+..+...+...|++++|...|+.+....|.+...|..+..+|...|++++|+..|++..... +.+...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34555666777788888888888888888888788888888888888888888888888887753 34566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006154 579 CKFGCYQQARELMKVMILH 597 (658)
Q Consensus 579 ~~~g~~~~A~~~~~~~~~~ 597 (658)
...|++++|++.+++.++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888887764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-05 Score=63.82 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+...|++++|...++.+....+.+...+..++..+...|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444443344444444444444444444444444444321 1123333444444444444
Q ss_pred HHHHHHHHHHHH
Q 006154 584 YQQARELMKVMI 595 (658)
Q Consensus 584 ~~~A~~~~~~~~ 595 (658)
+++|.+.+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.5e-06 Score=66.19 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++++.+..+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556667777888888888888888887633 367788888888888888888988888888888888888888888999
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 006154 545 INGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~ 562 (658)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999988888773
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.1e-06 Score=68.77 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+.+.|++++|+..|++..+..+ .+...|..+..++...|++++|...++++....+.++..+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455566677777777777777766532 256666667777777777777777777777777667777777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRN 561 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~ 561 (658)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=63.20 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566667777788888888887777653 235667777777788888888888888888887777778888888888
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 006154 544 FINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (658)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8888888888888888775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=7.4e-06 Score=72.85 Aligned_cols=95 Identities=14% Similarity=-0.021 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
.+|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455556666666666666666666665542 2345555566666666666666666666665542 22344455555555
Q ss_pred HhCCChHHHH-HHHHHHH
Q 006154 614 SKNCSPEEVI-ELHDDMV 630 (658)
Q Consensus 614 ~~~g~~~~A~-~~~~~m~ 630 (658)
...++.+++. ..+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555544444 3344443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=71.84 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN---------------LVIYNSIINGLCKDASLDAAKSLLQASQRIGL 530 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 530 (658)
.+..+...+...|++++|+..|++..+...... ...+..+..++...|++++|...++.+.+..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344455556666666666666666665322111 26677778888888888888888888888887
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 006154 531 LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR-ELMKVMIL 596 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 596 (658)
.+..++..++.+|...|++++|...|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888899999988888887753 335666777777777777666665 44444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=66.11 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF 577 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 577 (658)
+...+..+...+...|++++|...++.+....+.+...|..++.++...|++++|...+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 445555556666666666666666666666655566666666666666666666666666665542 2245555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006154 578 LCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~ 596 (658)
+...|++++|+..++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.4e-06 Score=67.19 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----hHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI--AVN----KVGYNILI 575 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l~ 575 (658)
+..+...+...|++++|...++++....+.+...+..++..+...|++++|...++++.+... .++ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344444444555555555555555554444455555555555555555555555555544210 111 33444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006154 576 NFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.6e-06 Score=64.93 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=50.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP--DYVTYTTL 609 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 609 (658)
+...+..++..+...|++++|...++++.+.. +.+...+..+..++...|++++|++.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34444455555555555555555555554432 2234445555555555555555555555555431 11 34455555
Q ss_pred HHHHHhC-CChHHHHHHHHHHHH
Q 006154 610 VTRFSKN-CSPEEVIELHDDMVL 631 (658)
Q Consensus 610 ~~~~~~~-g~~~~A~~~~~~m~~ 631 (658)
...+.+. |++++|.+.+++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 5555555 555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=68.52 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
...+..+...+...|++++|...|+++.+..+.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33445555555566666666666666666655566666666666666666666666666665542 22355555666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006154 579 CKFGCYQQARELMKVMILH 597 (658)
Q Consensus 579 ~~~g~~~~A~~~~~~~~~~ 597 (658)
...|++++|++.|++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-06 Score=66.86 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=94.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI--IPD----YVTY 606 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 606 (658)
...+..++..+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4577888999999999999999999998864 45678889999999999999999999999987521 122 6778
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 607 TTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
..+...+...|++++|.+.++++.+. .|+......+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 88899999999999999999999984 567766666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-06 Score=64.64 Aligned_cols=100 Identities=15% Similarity=0.001 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCc--CHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVE--NVNTFNL 221 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ 221 (658)
.+..++..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 3455667777778888888888888888777643 256677777777777788888888887777653 23 4666777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhC
Q 006154 222 VIYALCKE-CKLEEALSLYYRMLKS 245 (658)
Q Consensus 222 l~~~~~~~-g~~~~A~~~~~~m~~~ 245 (658)
+...+.+. |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77777777 7777777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-06 Score=66.06 Aligned_cols=92 Identities=14% Similarity=-0.057 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+.+.|++++|...++++.+..|.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444555555555555555555555555555555555555555555555555555532 2234445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|+..++++++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-05 Score=62.69 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
.+...+..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+..+.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3566777778888888888888888888877643 357778888888888889999999998888888888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 006154 542 GYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998888763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-05 Score=63.63 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+++..+..+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444445555555555555555555543 222 33444444444455555555555555544444444444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.3e-05 Score=63.82 Aligned_cols=96 Identities=13% Similarity=-0.069 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
..+..+...+...|++++|...+++..+..+.+ ...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 344444444444555555555555544444432 4444444444444444444444444444421 122334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~ 596 (658)
++...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=64.54 Aligned_cols=95 Identities=13% Similarity=-0.052 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+.+.|++++|+..+++..+..+ .+...+..+..++...|++++|...++++.+..|.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455667788888888888888887633 36777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 006154 547 GKIAEAFAMFSEMRNV 562 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~ 562 (658)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-05 Score=66.40 Aligned_cols=98 Identities=7% Similarity=-0.008 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++++.+..+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566667777778888888888887777533 26677777888888888888888888888888777888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 006154 544 FINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (658)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00014 Score=73.63 Aligned_cols=196 Identities=8% Similarity=-0.078 Sum_probs=102.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEEHMVGDA----------------YSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPD 463 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~ 463 (658)
...+.+.|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888776443211 124556666777777777776666654421 1111
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---
Q 006154 464 II----TYGTLIDGYCKGGNIEGAVQVYENMKK----VEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--- 531 (658)
Q Consensus 464 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 531 (658)
.. ..+.+...+...|+++.|..++..... .+..+ -..++..+...+...|++++|..+++.+......
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111222222334666666666655542 11111 1334555666666666666666666655432111
Q ss_pred ---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 ---DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN--KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2345555666666666666666666555431 11111 12344445555556666666666555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=74.29 Aligned_cols=196 Identities=13% Similarity=-0.035 Sum_probs=145.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDH----------------FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-GD 428 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 428 (658)
...+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999986433221 23678899999999999999999988764211 12
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C--
Q 006154 429 A----YSYNILINYLCKSNNLAAAKQLLSSMIVR----GLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVE--K-- 495 (658)
Q Consensus 429 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-- 495 (658)
. .+.+.+...+...|+.+.|..++...... +..+. ..++..+...+...|++++|..+++++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333444455678999999999887642 22223 4567788999999999999999999876531 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 496 KP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGL----L---DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+ ...++..++..|...|++++|..++++...... + -...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 245788889999999999999999998765422 1 235667777888889999999999988876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=67.75 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-NKVG 570 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 570 (658)
+..+...+...|++++|...+++..+.... ...++..+...+...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444432211 1235666666677777777777777666441 1001 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILH----GIIP-DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677777777777777777776642 1111 133456666677778888888888777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=59.62 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=39.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDA---ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN---KVGYNILINFLCKF 581 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 581 (658)
.+...|++++|...++.+.+..+.+. ..+..++.++...|++++|...++++.+.. +.+ ...+..+..++...
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHc
Confidence 34444444444444444444444332 344444444445555555555554444421 111 23344444444455
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|+..++++..
T Consensus 90 g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 90 GKNTEAQQTLQQVAT 104 (129)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=66.77 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++....... ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555544432100 01 124555555666666666666666665443211 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-NKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777788888888888888777542 1111 134567778888888888888888888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-05 Score=65.38 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=43.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|++.+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45566666777777777777777777776643 334566666777777777777777777776664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.9e-05 Score=60.50 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006154 97 SCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKG 176 (658)
Q Consensus 97 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 176 (658)
+..++..+...|++++|...++.+++. .+..+..+.++..+..++.+.|++++|...|+++.+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344455555555555555555555441 01111111445555555555555555555555555543
Q ss_pred CccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 177 HSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 177 ~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
+... +.++..+..++.+.|++++|...|+++++.
T Consensus 70 p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 70 PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2210 344445555555555555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=82.11 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+.+.|++++|++.|++..+... .+...+..+..++.+.|++++|...++++.+..+.+..+|..+..+|...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3344555555555555544321 134444455555555555555555555555554444555555555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINF--LCKFGCYQQARELMK 592 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 592 (658)
+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554421 1122233333333 444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=77.94 Aligned_cols=132 Identities=13% Similarity=0.023 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--------------LVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
....+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777888888899999988888887432211 456666777777777777777777777777
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE-LMKVMI 595 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 595 (658)
.+.+..+|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++|.+ .++.|.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76677777777777777777777777777777642 2234556666666666666665543 334443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6e-05 Score=76.71 Aligned_cols=133 Identities=10% Similarity=-0.041 Sum_probs=101.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--------------IITYGTLIDGYCKGGNIEGAVQVYENMKKV 493 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 493 (658)
....+..+...+.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455777888888899999999999988887532211 577788888888999999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 006154 494 EKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA-MFSEMRN 561 (658)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 561 (658)
.. .+...+..+..+|...|++++|...|+++.+..+.+..++..+..++.+.++.+++.+ .+..|..
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 3677888888899999999999999999998888888888888888888888877753 4444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00029 Score=73.41 Aligned_cols=173 Identities=9% Similarity=0.032 Sum_probs=129.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS----------LDAAKSLLQASQRIGLLDAITYNTLINGYFING- 547 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 547 (658)
..++|++.++++.+..+. +..+|+.-...+...|+ ++++.+.++.+.+..+.+..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345678888888775433 45556555555555555 888888888888888888888888888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---------
Q 006154 548 -KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG-CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN--------- 616 (658)
Q Consensus 548 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------- 616 (658)
+++++++.++++.+.+ +-|...|+....++.+.| .++++++.++++++... -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 6788999999888865 447788888888888888 88888888888887643 3666777666665542
Q ss_pred -----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCCCc
Q 006154 617 -----CSPEEVIELHDDMVLSGVSP-DNQTYNAIISPLLGEKSAED 656 (658)
Q Consensus 617 -----g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 656 (658)
+.++++++.++++... .| |...|..+-..+...++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5578899999888874 44 55788888888888777554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=81.69 Aligned_cols=126 Identities=14% Similarity=0.024 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|++.+++..+... .+...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3344567788999999999999988632 3688899999999999999999999999998743 3678889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLING--YFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 560 (658)
|++++|.+.++++.+..+.+...+..+..+ +.+.|++++|++.+++..
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999988877777777777 888899999999887643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=8e-05 Score=63.51 Aligned_cols=100 Identities=9% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKV--------E---------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
+......+.+.|++++|+..|.+..+. . .+.+...|..+..++.+.|++++|...++.+.+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334444555555555555555555442 0 01134577888888999999999999999999998
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 568 (658)
+.+..+|..++.+|...|++++|...|++..+. .|+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 889999999999999999999999999999885 4553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=64.53 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVE--KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
|++++|+..|++..+.+ .+.+...+..+...+...|++++|...++++.+..|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444555555444432 0112233444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHH
Q 006154 556 FSEMRN 561 (658)
Q Consensus 556 ~~~~~~ 561 (658)
+++...
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-05 Score=74.08 Aligned_cols=140 Identities=11% Similarity=-0.032 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+.+.|++++|+..|++..+.- +.. ..... .+......+.+..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777766520 000 00000 0111112222566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+.|++++|+..++++++.. +.+...+..+..+|...|++++|++.++++.+.. +.+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777753 3346667777777777777777777777777642 224555555655666556555554
Q ss_pred H
Q 006154 624 E 624 (658)
Q Consensus 624 ~ 624 (658)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.5e-05 Score=73.84 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+.+.|++++|...|++.++.- +.. ......+ ...+. .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHH-HHHHHHHHHHHHHH
Confidence 5568888999999999999999999887630 000 0001111 11111 01134566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+.+.|++++|...++++.+..+.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887777777788888888888888888888888877743 234556666666666666666554
Q ss_pred H
Q 006154 589 E 589 (658)
Q Consensus 589 ~ 589 (658)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=63.16 Aligned_cols=85 Identities=18% Similarity=0.059 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHcC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 512 DASLDAAKSLLQASQRIG---LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.|++++|...++++.+.+ +.+..++..++.+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777764 3366677777777777777777777777777653 334666677777777777777777
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=60.63 Aligned_cols=62 Identities=11% Similarity=-0.069 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-hHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNV-----GIAVN-KVGY----NILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555555555555555555555442 01233 3344 5555555555555555555555553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00012 Score=60.76 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILH-----GIIPD-YVTY----TTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667777777777777777777777663 11444 3355 6666677777777777777777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00061 Score=70.95 Aligned_cols=172 Identities=8% Similarity=-0.037 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN----------LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG- 478 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 478 (658)
.++|++.++++++.++. +..+|+.--..+...|+ ++++++.++.+.+...+ +...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35677888888777655 55666666666666555 78888888888876443 6667777777777777
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc----------
Q 006154 479 -NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-SLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---------- 546 (658)
Q Consensus 479 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 546 (658)
+++++++.++++.+.... +...|+.-...+.+.| .++++.+.++++.+..+.+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888886544 6777777777777777 788888888888888888888888877777663
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 547 ----GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 547 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+.++++++.++++.... +-|...|..+...+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45688888888887753 446777877777777766633
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00046 Score=56.74 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFA 554 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 554 (658)
++++|++.|++..+.+. |+.. +...|...+.+++|.+.|++..+.+ ++.++..|...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34455555555554431 1111 3333444444444555555444442 44444444444444 444444444
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILH 597 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 597 (658)
.|++..+.| +...+..|...|.. .+++++|.+.+++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 444444432 33334444444444 44444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00065 Score=55.84 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQAR 588 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 588 (658)
+++++|...|++..+.+..... |...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777777777643333 6666666677777888787777754 56666777777776 67778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSK----NCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 633 (658)
+.|++..+.| +...+..+...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888777764 45666667777776 677788888887777765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.7e-05 Score=74.02 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTR- 612 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~- 612 (658)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 44555555555555555555555555532 223445555555555555555555555555432 222 2223333222
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 006154 613 FSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~ 631 (658)
....+..+++...|++|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 2223445555555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=5e-05 Score=73.83 Aligned_cols=132 Identities=15% Similarity=-0.015 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV------------------IYNSIINGLCKDASLDAAKSLLQA 524 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~ 524 (658)
....+..+...+.+.|++++|+..|++..+. .|+.. .|..+..++.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456677778888999999999999998875 34433 788888999999999999999999
Q ss_pred HHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006154 525 SQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF-LCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+..+.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+++...|++|...
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999988899999999999999999999999999998753 2234555555555 33456778888888888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.4e-05 Score=60.69 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|+..+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=8.7e-05 Score=61.40 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI----------AEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
.+.+++|.+.++...+..|.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666665555443 46666666666632 22345566666666654
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006154 582 -----------GCYQQARELMKVMILHGIIPDYVTYTTL 609 (658)
Q Consensus 582 -----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l 609 (658)
|++++|++.|+++++. .|+...|...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3677777777777763 5655444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00026 Score=71.83 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=44.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC---CHhhH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKV---EKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQR-----IGLL---DAITY 536 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~~~~ 536 (658)
..+...|++++|+.++++..+. -..|+ ..+++.|...|...|++++|..+++++.. .|+. ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455667777777776665532 11111 23455555555566666666655555432 1222 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
+.|+..|...|++++|+.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00026 Score=55.42 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=40.7
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...+..++..+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666666666677777777776666642 234556666666666667777777766666653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=57.50 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+|...++++.+..+.+...+..++..|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666542 23455566666666666666666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=60.55 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=72.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS----------LDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
+.+.+++|++.++...+..+. +...|..+..++...++ +++|...|+++.+..|.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445566677777666665332 55666666666665554 5699999999999999999999999999988
Q ss_pred cC-----------CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 546 NG-----------KIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 546 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
.| ++++|++.|++.++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 74 89999999999998 467766554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00042 Score=70.33 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=85.2
Q ss_pred HHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC
Q 006154 102 HLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV-----KG 176 (658)
Q Consensus 102 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g 176 (658)
..+...|++++|+.++++.++. .+..+. +..|....+++.|+.+|...|++++|..++++.++ .|
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~--------~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEK--------QEPVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--------HTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHH--------HHHhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3456789999999999887752 111111 12333456788889999999999999998888765 22
Q ss_pred C--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 177 H--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-----CGY-VEN-VNTFNLVIYALCKECKLEEALSLYYRMLK 244 (658)
Q Consensus 177 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 244 (658)
. +....+++.|...|...|++++|..++++.++ .|. .|+ ..+.+.+-.++...+.+++|..+|.++.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22345677777777777887777777777663 221 122 23344455555566667777777766653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00033 Score=55.46 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|+..|++..+... .+...+..+...+...|++++|...++++....+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677777776533 36777888888888888888888888888888888888888888888889999999988888876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00062 Score=50.88 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+...+...|++++|...+++..+..+.+...+..+..++...|++++|...+++..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444444444444433333333444444444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=48.94 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|+..+++..+... .+...+..+...+...|++++|...+++..+..+.+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555566666777777777777777766532 25566667777777777777777777777777766777777666666
Q ss_pred HHc
Q 006154 544 FIN 546 (658)
Q Consensus 544 ~~~ 546 (658)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0034 Score=59.89 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 565 AVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
+.+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3445556655555555666666666666666653 5655555556666666666666666666665 455555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=50.57 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++..+..++..|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666666666665542 22344555666666666666666666665553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=49.54 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+...+..+...+...|++++|...|+++.+..+.+..+|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667778888888888888888888888888888888888888888888998888888888765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.007 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYT 607 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 607 (658)
++.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 34488889888888888899999999999999864 78888888899999999999999999999885 67776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.89 E-value=7e-07 Score=86.08 Aligned_cols=205 Identities=15% Similarity=0.105 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
..+.+|..|..++.+.|++.+|++.|-+. -|+..|..++.+..+.|.+++-+..+...++.. .+...=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 45678999999999999998887766432 267788899999999999999999888877653 3445567888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC-------------------
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS------------------- 284 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------------- 284 (658)
-+|++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+ ....
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i---sN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---CCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876644332 2 367777788888888889888888887763 1110
Q ss_pred -cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 285 -VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 285 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
-.-++.||..+-.+|...+.+.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-.... ......|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 0124556666666666666666554443333321 1112234445666666666666666654321 22445566
Q ss_pred HHHHHHHhc
Q 006154 364 STIHWLFAE 372 (658)
Q Consensus 364 ~ll~~~~~~ 372 (658)
-|.-.|++-
T Consensus 268 ELaILYsKY 276 (624)
T 3lvg_A 268 ELAILYSKF 276 (624)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHhc
Confidence 665555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0038 Score=47.40 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAI-TYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+...|++++|...++++.+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555555555555544444444 455555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0063 Score=60.61 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRN-----VGI-AVN-KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+++.|+.+|...|++++|+.++++.++ .|. .|+ ..+++.|...|...|++++|+.+++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4555666666666666666666665543 120 111 34566677777777777777777766553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.76 E-value=0.85 Score=49.32 Aligned_cols=350 Identities=11% Similarity=-0.017 Sum_probs=187.0
Q ss_pred HHHHHHHHhcCChHHH-HHH-HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH--hHHHHHHHH
Q 006154 293 NCIINGFCKLGRVEFA-EEI-RYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN--VVYNSTIHW 368 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A-~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~ 368 (658)
.++.+++...|--... ... ...+-+. .+....-.+..-+....|+.++++.+++.....+-..+. ..-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3556777777643222 111 1222222 222222233344567788989998888776542211122 222333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHH--HHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDKHI-------CPDHFTYSILTKGLCRNGC-VKQAFKLHNQVLEEHMVGDAYSYN--ILINY 438 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~ 438 (658)
....|..+++..++...+...- .+....-..+.-++...|. -+++.+.+..++..... ...... ++...
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli 499 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLC 499 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhh
Confidence 5556665677877777664321 0111222333333443443 24666666666654211 111122 33344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID--GYCKGGNIEGAVQVYENMKKVEKKPNLVIY--NSIINGLCKDAS 514 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 514 (658)
++-.|+.+....++..+.+. .+......+.. ++...|+.+.+..+.+.+... ..|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 55678888888888877664 23333333443 344678988888888888763 22222221 234456778899
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY-QQARELMKV 593 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 593 (658)
.....++++.+......+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+.++..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 8888889998887644344444444445555677766777776666543 44444334444455555553 678888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHH--hCC-------ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFS--KNC-------SPEEVIELHDDMVLS-GVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~--~~g-------~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 653 (658)
+.. .+|..+-...+.++. -.| +.....+.+...... .-.++...-..+..++...|.
T Consensus 655 L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 655 LTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred Hcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 874 345554433333333 333 334444444444432 224556666677777776664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.027 Score=42.02 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 497 PNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++..+..+..++...++ .++|..++++..+..+.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355566666666654333 5777777777777777777777777777777777777777777777653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0078 Score=59.93 Aligned_cols=61 Identities=10% Similarity=-0.089 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKA-----G-IDC-NVRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
.+++.+..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555544431 1 011 1233444444455555555555444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.017 Score=43.21 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCHHhHHHHHHHHHcCCC---chHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRR---FDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDV 168 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 168 (658)
.+++.+...+.++...++ .++|..++++.++ ..|.++.+...+...+.+.|++++|+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345555555555543332 4556666665555 3555556666666666666666666666
Q ss_pred HHHHHhCC
Q 006154 169 IQKLKVKG 176 (658)
Q Consensus 169 ~~~~~~~g 176 (658)
|+++.+..
T Consensus 66 w~~~l~~~ 73 (93)
T 3bee_A 66 WVLLLDSN 73 (93)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhhC
Confidence 66665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=57.22 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----CCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----hHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRI-----GLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV---GIAVN----KVGYNI 573 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ 573 (658)
+...|++++|..++++..+. ++. ...+++.++.+|...|++++|+.++++++.. -..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666655543 111 2345666777777777777777777766431 11122 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|...|...|++++|+.+++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888887777777663
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0074 Score=45.74 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY 536 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 536 (658)
...+.+.|++++|+..++++.+... .+.. .+..+..++...|++++|...++++.+..+.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455566777777777777766532 2445 666777777777777777777777777766655544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.023 Score=46.34 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVIELH 626 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 626 (658)
+.+.|.+....+. ++..+...+..++++.+ ++++++.+++...+.. .| +...+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444555555544 3345555555554432 12 1223333444445555555555555
Q ss_pred HHHHH
Q 006154 627 DDMVL 631 (658)
Q Consensus 627 ~~m~~ 631 (658)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.13 Score=56.59 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=81.9
Q ss_pred HhcCCHHHHHH-HHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 262 CQVGDLEFALK-LFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 262 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
...+++++|.+ ++.. +. +......++..+.+.|..++|.++.+... .-.......|++
T Consensus 610 ~~~~~~~~a~~~~l~~---i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN---VE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHTTCHHHHHHHTGGG---CC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHHHhc---CC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34677777766 4432 11 01122566666777777777766542111 112334566777
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7777765432 3567777788888888888888877776643 334444455566655554444444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 421 LEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
...| -++....+|.+.|++++|.+++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333444455555554444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=57.69 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-Chhh
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPN----SVTHNCIINGFCKLGRVEFAEEIRYAMIKA-----G-IDC-NVRT 326 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~ 326 (658)
+..+...|++++|+.++++.......-+.|+ ..+++.+..+|...|++++|+.+++++.+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344556677777777666422222222222 345666666666666666666666655432 1 011 2344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666666655543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.32 Score=38.14 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
++.+...|+.+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444443221 23444444444444444444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.17 E-value=3.5e-06 Score=81.36 Aligned_cols=119 Identities=10% Similarity=0.050 Sum_probs=87.2
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIIN 259 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 259 (658)
.+..|..|..+..+.++..+|++-|-+ ..|+..|..++.+..+.|++++-++++....+..-+| ..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH
Confidence 456788899999888888887765522 2355678888999999999999999887766553333 44458999
Q ss_pred HHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 260 EACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 316 (658)
+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~rL~elEefl~----------~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp HHHTSCSSSTTTSTTS----------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred HHHhhCcHHHHHHHHc----------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 9999998766554432 2566677778888888888888877765543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.037 Score=50.51 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CCHHH
Q 006154 515 LDAAKSLLQASQRIGLL--DAITYNTLINGYFIN-----GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF-GCYQQ 586 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 586 (658)
...|...++++.+..+. +...|..++..|.+. |+.++|.+.|++.++....-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56778888888888887 777888888888884 88888888888888843212367777778877774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHH
Q 006154 587 ARELMKVMILHGII--PDYVTYT 607 (658)
Q Consensus 587 A~~~~~~~~~~g~~--p~~~~~~ 607 (658)
|.+.+++.+..... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888876554 5544433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.074 Score=42.71 Aligned_cols=107 Identities=7% Similarity=-0.052 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCccCH-HhHHHHHHHH------HhcCCHhHHHHHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGAT------EGAYDVIQKLKVKGHSVSI-HAWNNFLSHL------VKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~------~~~g~~~~a~~~~~~~~ 208 (658)
.|.++.+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+..+ ...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 567888888888888888998 8888999988875 34432 2222322222 23478888899998887
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 209 SCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250 (658)
Q Consensus 209 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 250 (658)
+.+-.- ...|......-.++|++..|.+++...+..+.+|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653233 66777777777788999999999988888776644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.48 Score=51.95 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554321 24455666666666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.07 Score=43.53 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CC-CHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIG-LL-DAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.+.+.|.+..+.+. ++..+...+..++++.+ +++++..+++...+.. +. +...+..+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 33444444444333 45555555555555555 4445666666655554 31 3445555555566666666666666
Q ss_pred HHHHH
Q 006154 557 SEMRN 561 (658)
Q Consensus 557 ~~~~~ 561 (658)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.29 Score=38.38 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
......++.+..+|+-+.-.++...+....+.++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555554444444555555555555555555555555555555553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.71 E-value=3 Score=45.21 Aligned_cols=272 Identities=11% Similarity=0.036 Sum_probs=155.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCChhhHHHHHH
Q 006154 367 HWLFAEGDVEGALFVLSDMIDKHICPDHF--TYSILTKGLCRNGCVKQAFKLHNQVLEEHM-------VGDAYSYNILIN 437 (658)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 437 (658)
-+....|+.++++..+......+...+.. .=..+.-+....|..+++.+++...+...- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888877665422112222 223334455566766678887777665421 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 006154 438 YLCKSNN-LAAAKQLLSSMIVRGLIPDIIT--YG--TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING--LC 510 (658)
Q Consensus 438 ~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 510 (658)
++...|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. +..+...+..+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3433332 245666666666531 2221 12 22333456678777777777776532 33344444444 44
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
..|+.+.+..+.+.+.....+ ....-.++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 678999999998888875332 22233455667888899877777998888742 223333333444555677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSP-EEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+-+++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 7777666543 45555444555555556654 578889999874 556655544444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.069 Score=40.83 Aligned_cols=66 Identities=11% Similarity=-0.078 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVG------IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
++.-+..++..+.+.|+++.|...|+++.+.- -.+....+..+..++.+.|++++|+..++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888887776521 1234556777778888888888888888887764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.12 Score=39.47 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVE------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
+..+...+.+.|+++.|...|+...+.. -.+...++..+..++.+.|+++.|...++++.+..|.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3344444555555555555555444320 0112333444444444444444444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=47.08 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCh
Q 006154 549 IAEAFAMFSEMRNVGIAVN---KVGYNILINFLCKF-----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN-CSP 619 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~ 619 (658)
...|...+++.++. .|+ ...|..++..|.+. |+.++|.++|++.++.+..-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888884 566 55788999999984 99999999999999853222477888888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006154 620 EEVIELHDDMVLSGVS--PDNQTYNAII 645 (658)
Q Consensus 620 ~~A~~~~~~m~~~g~~--p~~~~~~~l~ 645 (658)
++|.+.+++.++.... |+....+.+-
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999999997655 6666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.1 Score=37.46 Aligned_cols=102 Identities=11% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888888887765 2677888888888888888888888877653 344444555667776
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
...++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665555444332 244455556667888888888876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.1 Score=37.46 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
..|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444333 13444444444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.3 Score=39.26 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
+++++|.++|+.+.+.+-.- ...|....+--.++|+++.|.+++......++.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 56666666666665442222 445555555555566666666666666666555554444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.25 Score=38.68 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ---ARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
...+.+.|.+....| .|+..+-..+..++.+..+... ++.+++.....+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444433 2455555555666666655444 666666655432 12 2223333444566666666666
Q ss_pred HHHHHHHHCCCCCCH
Q 006154 624 ELHDDMVLSGVSPDN 638 (658)
Q Consensus 624 ~~~~~m~~~g~~p~~ 638 (658)
+.++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 66666666 45543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.22 Score=38.93 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE---AFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.+..+.+-+......+..+..+-..+..++.+...... ++.++++..+.+ .| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444455555545455555566666666666655444 666666666543 12 2223334555666777777777
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.27 E-value=9.8 Score=37.80 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=142.3
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc
Q 006154 407 NGCVKQAFKLHNQVLEE-----HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKG 477 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~ 477 (658)
.|+++.|++.+..+.+. +..........++..+...++++...+.+..+....-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877666543 233345667788889999999998888776665542222 22223333322 223
Q ss_pred CChHHHH--HHHHHHHh---CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHhhHHHHHHHH
Q 006154 478 GNIEGAV--QVYENMKK---VEKKP---NLVIYNSIINGLCKDASLDAAKSLLQASQRIGL--L----DAITYNTLINGY 543 (658)
Q Consensus 478 g~~~~A~--~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~ 543 (658)
...+... .+.+.... ..+-. .......|...+...|++.+|.+++..+...-. . -...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111111 11111 122345677888889999999999988764322 1 245677778888
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHH
Q 006154 544 FINGKIAEAFAMFSEMRN----VGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH-GIIPDYVTYT----TLVTR 612 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~----~l~~~ 612 (658)
...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....|...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 899999999988888742 222222 234567777888889999988888877642 1111332222 22333
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 006154 613 FSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGE 651 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 651 (658)
..-.+...+--.++........-++...+..+++++...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 333444444455555555444445667777787777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.65 E-value=2.6 Score=44.70 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 578 LCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
|...|+++.|+++.++.+.. .+.+..+|..|..+|...|+++.|+-.++.|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455555555555555543 1223445555555555555555555555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.28 E-value=1 Score=47.79 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 006154 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 652 (658)
+..-|..|.....+.+++++|.+.|+..+. ..-+...+..|++.|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 444578888888899999999999999997 4689999999999998866
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.83 E-value=11 Score=35.41 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDV----IQK 171 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~ 171 (658)
.|.++..-+.+.+++++|..++-.-.. .+.+.|+...|-++ ++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~--------------------------------~ll~~~Q~~sg~DL~~llvev 84 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ--------------------------------TLLRSGQGGSGGDLAVLLVDT 84 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH--------------------------------HHHHCCCcchHHHHHHHHHHH
Confidence 455666777778888888776654332 23334444333333 344
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHh-HHHHHHHHHH----hCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIG-RFWKLYKEMV----SCG--YVENVNTFNLVIYALCKECKLEEALSLY 239 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 239 (658)
+.+.+.++|......++..+.....-+ .=..+.++++ +.| ..-|......+...|.+.+++.+|...|
T Consensus 85 y~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 85 FRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455566666666666666655544211 1112222222 111 2234555566666666777766666655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.64 E-value=9.3 Score=43.45 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSIL 400 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 400 (658)
.-|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++|...+-.+-....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777777888888887777666543221111 24677788888888888888877776654332 4456666
Q ss_pred HHHHHhcCChHH
Q 006154 401 TKGLCRNGCVKQ 412 (658)
Q Consensus 401 ~~~~~~~g~~~~ 412 (658)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 666776665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.53 E-value=4.7 Score=31.67 Aligned_cols=72 Identities=8% Similarity=-0.156 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 565 AVNKVGYNILINFLCKFGCY---QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.|+..|--.+..++.+..+. .+++.+++.....+..-....+--+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45555555556666665543 35666666666543111233444455566677777777777776665 45554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=2.1 Score=41.82 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL-----HGIIPDYVTY 606 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 606 (658)
..+...++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4455566677777788888877777776643 44666777778888888888888877777653 3777766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.42 E-value=7.6 Score=44.17 Aligned_cols=152 Identities=8% Similarity=0.010 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcC---C--CChHHHHHHHHhhccCCCCCH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSAN---S--VSPLEFLEGLLDSYEICKATP 146 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~~~~~ 146 (658)
+..+.|.++..|+.. ++.....++.++...|++++|...|.+....- . .....-+..+.........-+
T Consensus 826 ~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 345678888888653 44455778999999999999999998764320 0 111222333333333333344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSI----HAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLV 222 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (658)
..|.-++..+-+.|.++.+.+.-....+...+.+. ..|..+...+...|++++|...+-.+.... .-......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 55666666777777777776666655543211111 135555555555566665555555544332 223344445
Q ss_pred HHHHHhcCC
Q 006154 223 IYALCKECK 231 (658)
Q Consensus 223 ~~~~~~~g~ 231 (658)
+..+|..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 554554444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=1.3 Score=43.26 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-----VGIAVNKVGYN 572 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 572 (658)
...++..+...|+++++...+..+....|.+...|..++.++...|+..+|++.|++..+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667778899999999999999998888999999999999999999999999988743 58888877543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=21 Score=37.08 Aligned_cols=394 Identities=12% Similarity=0.046 Sum_probs=198.0
Q ss_pred HHHHHhccCCchhhhhhhCCC-----CCHHHHHHHHH-hcC-CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCC
Q 006154 37 RAICVNLRQRKWKILEQMAPS-----LTNSLVNRVVS-EFR-KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRR 109 (658)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~vl~-~~~-~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (658)
......+++.+|.....+... |.|-.--..|. .+. .++.....| +.+.++.+.....-..-+..+.+.++
T Consensus 11 ~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~F---l~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 11 AQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 344455677777665544333 32222112222 121 134433333 33333333333333445566666666
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006154 110 FDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLS 189 (658)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 189 (658)
+.....++ +..|.+...-.....+....|+..+|......+...|.. .+..|..++.
T Consensus 88 w~~~l~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~ 144 (618)
T 1qsa_A 88 WRGLLAFS----------------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFS 144 (618)
T ss_dssp HHHHHHHC----------------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHH
T ss_pred HHHHHHhc----------------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHH
Confidence 66543322 234667777777888888999988888888888877643 6777888888
Q ss_pred HHHhcCCH--hHHHHHHHHHHhCCCCcCHHHHHHHHHHH-----------Hh-cCCHHHHHHHHHHHHhCCCCCChhh--
Q 006154 190 HLVKLNEI--GRFWKLYKEMVSCGYVENVNTFNLVIYAL-----------CK-ECKLEEALSLYYRMLKSGIWPNVVC-- 253 (658)
Q Consensus 190 ~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~m~~~~~~p~~~~-- 253 (658)
.+.+.|.. +..+.=++.+...| +...-..++..+ .. ..+...+...... ..++...
T Consensus 145 ~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~ 216 (618)
T 1qsa_A 145 VWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQ 216 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHH
Confidence 88877644 33444444444443 111111111111 00 0111111111111 1122221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 006154 254 -FNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT----HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYA 328 (658)
Q Consensus 254 -~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 328 (658)
+...+.-+. ..+.+.|...+... .... ..+... +..+...+...+...++...+...... ..+.....
T Consensus 217 ~~~~~~~rla-r~d~~~A~~~~~~~---~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e 289 (618)
T 1qsa_A 217 MAAVAFASVA-RQDAENARLMIPSL---AQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHH---HHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhh---hhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHH
Confidence 111222222 34778898888873 2211 112222 222233333344355666666665543 33444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 329 TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG 408 (658)
Q Consensus 329 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (658)
-.+....+.|+++.|...|..|..... .......-+..++...|+.++|..+|..+... . .-|..+.. .+.|
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lAa--~~Lg 361 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVAA--QRIG 361 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHHH--HHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHHH--HHcC
Confidence 555556677999999999988865321 12333444566777889999999999888752 1 12332221 2222
Q ss_pred ChHHHHHHHHHHHHcCCCCC-h-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGD-A-----YSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEG 482 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 482 (658)
..-.. ....+.+. . ..-..-+..+...|....|...+..+... .+......+.......|.++.
T Consensus 362 ~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 362 EEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp CCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHH
Confidence 21000 00000000 0 01112345567788888888888777654 233333344444556677776
Q ss_pred HHHHHHH
Q 006154 483 AVQVYEN 489 (658)
Q Consensus 483 A~~~~~~ 489 (658)
++.....
T Consensus 432 ~v~~~~~ 438 (618)
T 1qsa_A 432 SVQATIA 438 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.56 E-value=14 Score=34.69 Aligned_cols=81 Identities=9% Similarity=-0.082 Sum_probs=47.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
++.....+...|.+.+++.+|...|- . |-.+....|..++.-+...+...++ +...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-
Confidence 88889999999999999999988872 2 3233345665554444433322211 222222222
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 006154 612 RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~ 631 (658)
-|.-.++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34556777777776665553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.32 E-value=7.1 Score=31.12 Aligned_cols=72 Identities=8% Similarity=-0.164 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 565 AVNKVGYNILINFLCKFGC---YQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.|+..+--.+.+++.++.+ ..+++.+++.....+..-.....--+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555556666666654 345666666666543221233333445567777777777777777776 45544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.10 E-value=1.6 Score=32.10 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
+.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++-.+.+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455555566666666677777777777777777777777777666654 222333455444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.89 E-value=4 Score=32.07 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 495 KKPNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..|+..+--.+..++.+..+ ..++..+++.+.+.++. ....+-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555455555555443 33456666666555543 445555555666666666666666666666
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.70 E-value=7.7 Score=30.92 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|+..+--.+..++.+..+ ..++..+++.+....+. .....-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555555555443 33556666666655554 444455555666666666666666666666
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.50 E-value=21 Score=35.43 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCcH--hH
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCN-----VRTYATLIDGYARGGSSEEALRLCDEMVK----RGLMPNN--VV 361 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~~--~~ 361 (658)
..|...+...|++.+|.+++..+...-...+ +..+...++.|...+++.+|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4456666677777777777777653211111 23445556667777777777776666532 2122221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMI 386 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~ 386 (658)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555556666666666655554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.63 E-value=21 Score=34.50 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH--
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNV--GIAVN---KVGYNILINFLCKFGCYQQARELMKVMILH--GIIPDYVTYTT-- 608 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~-- 608 (658)
.++..|...|++.+|.+++.++.+. ..... ...+..-++.|...|++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4566666666666666666666441 11101 122334455566666666666666655422 12233322211
Q ss_pred --HHHHHH-hCCChHHHHHHHHHH
Q 006154 609 --LVTRFS-KNCSPEEVIELHDDM 629 (658)
Q Consensus 609 --l~~~~~-~~g~~~~A~~~~~~m 629 (658)
-+..+. ..+++++|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112244 566666666655544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.18 E-value=21 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=21.4
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
++..+..+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 78888888888888888888877664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.14 E-value=21 Score=33.09 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCChhhHHHHHHH
Q 006154 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFV----LSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 328 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
.++..-|.+.+++++|++++..--. .+.+.|+...|.++ ++-..+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444446666666666666544321 23334444433332 3333344555555555555554
Q ss_pred HHhcCChH-HHHHHHHHHHHc----C--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 404 LCRNGCVK-QAFKLHNQVLEE----H--MVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 404 ~~~~g~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
+......+ .=.++++.+++. | ...++.....+...|.+.+++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 44322111 112233333321 1 2236666777777777777777776655
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.11 E-value=8.5 Score=28.43 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
+.=+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566667777777777888888888888888888888888888777665444445655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.34 E-value=6.9 Score=32.16 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~ 593 (658)
+..+|.+.|++++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44455555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.36 E-value=5.2 Score=31.32 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
|.-+..+-++.+...++.|++......+++|.+.+++..|+++++-.+.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555556666667777777777777777777777777777776654 233344555544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.64 E-value=25 Score=34.61 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
...+...|.+.|+++.|.+.+.++...... -...+-..+..+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555555555555555555555443221 3334444455555555555555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.21 E-value=9.3 Score=31.41 Aligned_cols=124 Identities=6% Similarity=-0.092 Sum_probs=68.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEIC-KA--TPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
++..-+..+...+.++.|+.+.+.++.. ....+.. ++ -..++..+..++...|++.+|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl------------~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTL------------SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh------------hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4566677888899999998887776541 1110000 00 1235667888999999999999999997
Q ss_pred HhCC--CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 173 KVKG--HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLK 244 (658)
Q Consensus 173 ~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 244 (658)
++.. ..-+..+...+ .. ...... ......+...--.+...+.+.|++++|+.+++.+..
T Consensus 90 Lq~~k~l~k~~s~~~~~-~~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPST-GN---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCccccc-cc---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5521 11111111011 00 000000 001123344444467778889999999998887644
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.14 E-value=19 Score=28.28 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+......+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34556666777777778888888888888888888888888888877765444555665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 658 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 47/335 (14%), Positives = 101/335 (30%), Gaps = 13/335 (3%)
Query: 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318
+ Q GD E A + ++ D N+ + + + R++ + IK
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPD----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 319 GIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGA 378
Y+ L + Y G +EA+ ++ + N + A
Sbjct: 63 NPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINY 438
+S + + + + K E A +++ L
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNL---LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 439 LCKSNNLAAAKQLLSSMIVRGLIPDII-TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKP 497
+ A + L P+ + Y L + + + AV Y +
Sbjct: 179 FNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPN 235
Query: 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557
+ V++ ++ + +D A + + + Y L N G +AEA ++
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMK 592
+ + N L N + G ++A L +
Sbjct: 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYR 329
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.5 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.46 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.92 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.46 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.15 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.5e-22 Score=196.75 Aligned_cols=383 Identities=15% Similarity=0.033 Sum_probs=212.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
+...+.+.|++++|.+.++++.+..+ -++.++..+...+.+.|++++|...|++.++.. +.+..++..+...+.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 45667788888888888888887643 267778888888888888888888888887754 3456777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEI 311 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 311 (658)
+++|++.+....+.... +..............+....+....... ... ..................+....+...
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSA---LQY-NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHH---HHH-CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccc---ccc-ccccccccccccccccccchhhhhHHH
Confidence 88888888887765332 3333344444444444444444444431 111 122334444455555566666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 312 RYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC 391 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (658)
+....... +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+.+....+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 66665543 344555666666666666666666666666554211 3445555555566666666666665555543222
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
+...+..+...+.+.|++++|.+.++++.+..+. +..++..+...+...|++++|.+.++...... +.+...+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence 3444444555555555555555555555554332 34444445555555555555555554444431 22334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
..+...|++++|+..|++..+..+ -+..++..+...+...|++++|...++++.+..|.++.+|..++.+|.+.|
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 444444444444444444444311 123334444444444444444444444444444444444444444444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.2e-21 Score=192.14 Aligned_cols=380 Identities=16% Similarity=0.093 Sum_probs=214.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 190 HLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF 269 (658)
Q Consensus 190 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 269 (658)
.+.+.|++++|.+.++++++.. +-+...+..+...+.+.|++++|...|+++++..+. +..++..+..++...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccc
Confidence 3444555555555555555432 223445555555555555555555555555443211 23344455555555555555
Q ss_pred HHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 270 ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDE 349 (658)
Q Consensus 270 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 349 (658)
|+..+.. ..+.. +.+..............+....+......
T Consensus 86 A~~~~~~--------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (388)
T d1w3ba_ 86 AIEHYRH--------------------------------------ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHH--------------------------------------HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred ccccccc--------------------------------------ccccc-ccccccccccccccccccccccccccccc
Confidence 5555544 44332 22222333333333333333333333333
Q ss_pred HHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 006154 350 MVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA 429 (658)
Q Consensus 350 ~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (658)
...... ................+....+...+....... +.+...+..+...+...|++++|...+++..+..+. +.
T Consensus 127 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 203 (388)
T d1w3ba_ 127 ALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FL 203 (388)
T ss_dssp HHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred cccccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cH
Confidence 322221 122233333334444455555555554444432 123444555555556666666666666666555433 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006154 430 YSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGL 509 (658)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 509 (658)
..+..+...+...|++++|...+.+...... .+...+..+...+.+.|++++|+..|+++.+..+ -+..++..+...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 5566666666666666666666666665432 3455566666667777777777777777766532 2456666777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 510 CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
...|++++|...++......+.+...+..+...+...|++++|+..|++..+.. +.+..++..++.++.+.|++++|++
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777777777777777777777777777777777777777642 2345567777777777777777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhCCC
Q 006154 590 LMKVMILHGIIP-DYVTYTTLVTRFSKNCS 618 (658)
Q Consensus 590 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 618 (658)
.|+++++. .| +...|..+...|.+.||
T Consensus 361 ~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 77777763 44 35567777777776664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.3e-13 Score=129.71 Aligned_cols=270 Identities=10% Similarity=-0.046 Sum_probs=175.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 329 TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG 408 (658)
Q Consensus 329 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (658)
.....+.+.|++++|...|+++.+.... +..+|..+..++...|++++|...+.+..+..+. +...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 3455666777777777777777766322 4556777777777777777777777777665332 4556666667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
++++|.+.++.+....+.. ...+....... . ..+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 7777777777766653221 11000000000 0 0000011111223344566777888887
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006154 489 NMKKVEK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567 (658)
Q Consensus 489 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 567 (658)
+..+... .++..++..+...+...|++++|...+++.....+.+..+|..++..|...|++++|.+.|+++.+.. +-+
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 7766433 23566777888888889999999999999988888888899999999999999999999999988753 334
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhCCChHHH
Q 006154 568 KVGYNILINFLCKFGCYQQARELMKVMILHG----------IIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 568 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----------~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
..++..++.+|.+.|++++|++.|++.++.. .......|..+-.++...|+.+.+
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6778889999999999999999999887630 111123455555555555655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.7e-13 Score=130.25 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=161.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (658)
...+.+.|++++|+..|+++++..+. +..+|..+..++...|++++|...+++..+..+. +...+..+...+...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 33444555555555555555543222 3444445555555555555555555555444332 344444444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++|.+.+++..... |+............ ...+.......+..+...+.+.+|...+.++
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 55555554444321 11100000000000 0000011111222334556778899999988
Q ss_pred HHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 526 QRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 526 ~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
.+..+. ++.++..++..+...|++++|+..+++..... +-+...|..++.++...|++++|++.++++++.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 887765 77889999999999999999999999998853 3457789999999999999999999999999853 2357
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHhhcCCCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLS----------GVSPDNQTYNAIISPLLGEKSAE 655 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~l~~~~~~~g~~~ 655 (658)
..|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d 302 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 302 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence 78889999999999999999999998872 11122235566666666555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.1e-09 Score=103.33 Aligned_cols=245 Identities=11% Similarity=0.039 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 397 YSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
++.+...+.+.+..++|++.++++++.++. +...|+.....+...| ++++|+..++..++... -+..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHH
Confidence 344444455556666666666666665444 5555555555555544 35666666666655432 24556666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC------H
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK------I 549 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 549 (658)
+.|++++|+..++++.+..+. +...|..+...+...|++++|...++.+.+..+.+..+|+.+...+.+.+. +
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence 666666666666666664332 555666666666666666666666666666666666666666655555443 4
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhC--C-------Ch
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP-DYVTYTTLVTRFSKN--C-------SP 619 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~--g-------~~ 619 (658)
++|+..+.++++.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+..++..|... + .+
T Consensus 203 ~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 203 EREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 56666666666542 2345555555444433 33455666666555432221 233444444444321 1 24
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 006154 620 EEVIELHDDMVLSGVSPDN-QTYNAIISP 647 (658)
Q Consensus 620 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 647 (658)
++|.++++.+... +.|-. .-|+.+.+.
T Consensus 281 ~ka~~l~~~l~~~-~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 281 NKALELCEILAKE-KDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHT-TCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 4555555554433 33322 335554444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.3e-09 Score=101.12 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHH
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG-SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF 370 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 370 (658)
|+.+...+.+.+.+++|+++++++.+.+ |-+...|+....++...| ++++|+..+++..+.... +..+|+.+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 3344444444455555555555555443 334444444444444433 245555555544443222 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006154 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEH 424 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (658)
+.|++++|+..+.++++.... +...|..+...+...|++++|++.++++++.+
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 444444444444444443222 34444444444444444444444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.4e-08 Score=97.88 Aligned_cols=268 Identities=13% Similarity=0.090 Sum_probs=135.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHH
Q 006154 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPN----NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC-PD----HFTYS 398 (658)
Q Consensus 328 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 398 (658)
......+...|++++|++++++..+.....+ ...+..+...+...|++++|...+++..+.... ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3344556677777777777777766522111 224555666677777777777777766542110 11 22334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHH
Q 006154 399 ILTKGLCRNGCVKQAFKLHNQVLEE----HMVG---DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL----IPDIITY 467 (658)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~p~~~~~ 467 (658)
.+...+...|++..+...+...... .... ....+..+...+...|+++.+...+........ ......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4455566666777666666655432 1111 112334445556666666666666655554311 1122333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHhhHH
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVE--KKPN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL----DAITYN 537 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 537 (658)
......+...++...+...+.+..... .... ...+......+...|++++|...++......+. ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 444445555566666666555443310 1101 112333444455556666666665555443332 223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRN----VGIAVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+...+...|++++|...++++.. .+..|+ ..++..+..+|.+.|++++|.+.+++.+
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555666666666666555532 122222 2344555555666666666666665554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1e-08 Score=99.03 Aligned_cols=275 Identities=14% Similarity=0.067 Sum_probs=169.1
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCC-----HHHHHHHHHHHHhcCChhHHHHHH
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKAT-----PAVFDALVRACTQIGATEGAYDVI 169 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 169 (658)
+.....+.++...|++++|..++++.++. .|.+ ..++..+..+|...|++++|...|
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~------------------~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEE------------------LPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 74 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455677778888888888888887763 1211 245667778888888888888888
Q ss_pred HHHHhCCCc-----cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCC--c-CHHHHHHHHHHHHhcCCHHHHHH
Q 006154 170 QKLKVKGHS-----VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC----GYV--E-NVNTFNLVIYALCKECKLEEALS 237 (658)
Q Consensus 170 ~~~~~~g~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~g~~~~A~~ 237 (658)
++..+.... ....++..+...+...|++..+...+.+.... +.. + ....+..+...+...|+++.+..
T Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~ 154 (366)
T d1hz4a_ 75 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 154 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH
Confidence 877653211 12344556667777888888888887776531 111 1 12345556667778888888888
Q ss_pred HHHHHHhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC-C--ChhhHHHHHHHHHhcCChHHHHH
Q 006154 238 LYYRMLKSGI----WPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL-P--NSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 238 ~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
.++....... .....++......+...++...+...+.+.......... + ....+..+...+...|++++|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (366)
T d1hz4a_ 155 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234 (366)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHH
Confidence 8877765321 122334555556666777777777776654222221111 1 12334555666777778888877
Q ss_pred HHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCc-HhHHHHHHHHHHhcCCHHHHHHHH
Q 006154 311 IRYAMIKAGIDC---NVRTYATLIDGYARGGSSEEALRLCDEMVK----RGLMPN-NVVYNSTIHWLFAEGDVEGALFVL 382 (658)
Q Consensus 311 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 382 (658)
.+....+..... ....+..+...+...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 314 (366)
T d1hz4a_ 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314 (366)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777665442111 223445566777777788877777776643 233333 235566667777777777777777
Q ss_pred HHHHh
Q 006154 383 SDMID 387 (658)
Q Consensus 383 ~~~~~ 387 (658)
++..+
T Consensus 315 ~~Al~ 319 (366)
T d1hz4a_ 315 LDALK 319 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=5.3e-09 Score=98.57 Aligned_cols=188 Identities=11% Similarity=0.104 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQ 523 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 523 (658)
..++|..++++.++...+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777776544445566666677777778888888888877765443334567777777777788888888888
Q ss_pred HHHHcCCCCHhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 006154 524 ASQRIGLLDAITYNTLINGY-FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG-IIP 601 (658)
Q Consensus 524 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p 601 (658)
++.+..+.+...|...+... ...|+.+.|..+|+.+.+. .+.+...|...++.+...|+++.|..+|++.+... ..|
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 87777776666555555433 3357778888888887765 24456677777777788888888888888877653 233
Q ss_pred C--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 602 D--YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 602 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+ ...|..++..-...|+.+.+.++++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 346777777666778888888888877663
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=7.2e-09 Score=97.65 Aligned_cols=188 Identities=7% Similarity=0.039 Sum_probs=150.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
..++|..++++.++...+.+...|...+..+.+.|+++.|..++++++..........|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788888888887655556677888888888999999999999998876444445678888888889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 006154 489 NMKKVEKKPNLVIYNSIING-LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG-IAV 566 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p 566 (658)
++.+.... +...|...... +...|+.+.|..+|+.+....+.++..|...+..+...|+.+.|..+|++..+.. ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 99886443 44444444433 3446889999999999999888899999999999999999999999999988753 233
Q ss_pred C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 567 N--KVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 567 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+ ...|...+..-...|+.+.+.++.+++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 356888888888899999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=3.4e-10 Score=108.59 Aligned_cols=228 Identities=10% Similarity=-0.058 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG--CVKQAFKLHNQVLEEHMVGDAYSY-NILINYLCKSNNLAAAKQL 451 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~ 451 (658)
+++|+..++...+..+. +...+..+..++...+ +.++|...++++.+..+. +...+ ......+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHH
Confidence 44444444444443221 3333333333333332 244555555555444332 22222 2223344445555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 452 LSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
++.++.... -+...|..+...+.+.|++++|...+....+. .|+ .......+...+..+++...+.......+.
T Consensus 167 ~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~ 240 (334)
T d1dcea1 167 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (334)
T ss_dssp HHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc
Confidence 555544432 24444555555555555555444333322221 000 111222233445555555666666655555
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLV 610 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 610 (658)
+...+..++..+...|+.++|...+.+..... +.+..++..++.++...|++++|++.++++++. .|+ ...|..+.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~ 317 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR 317 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHH
Confidence 55555555666666666666666666665532 223445556666666666666666666666653 443 33344443
Q ss_pred HHH
Q 006154 611 TRF 613 (658)
Q Consensus 611 ~~~ 613 (658)
..+
T Consensus 318 ~~~ 320 (334)
T d1dcea1 318 SKF 320 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=7.2e-10 Score=106.27 Aligned_cols=214 Identities=7% Similarity=-0.028 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN--NLAAAKQLLSSMIVRGLIPDIITYG-TLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~ 485 (658)
++++|+.+++.+.+.++. +...|..+..++...+ ++++|...+.++.+... ++...+. .....+...+.+++|+.
T Consensus 88 ~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHH
Confidence 344455555555544333 3444444444444333 24455555555544322 1222222 22233444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
.++.+.+..+. +...|..+...+...|++++|...++......+.. ......+...+..+++...+....... +
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE----LELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH----HHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH----HHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 55555444322 44444445555555555444433333222221111 111122233344444444444444432 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
++...+..++..+...|+.++|...+.+..... +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233334444444444555555555555444321 11233444444445555555555555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=6.6e-09 Score=95.26 Aligned_cols=129 Identities=14% Similarity=-0.069 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
+|..+..+|.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|++.|+++++..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 4555556666666666666666666654322 4556666666666666666666666666665443 4455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
..|++++|...++...+... .+......+...+.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 66666666666666665432 2333333333333444444444444444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.3e-08 Score=91.48 Aligned_cols=150 Identities=13% Similarity=-0.079 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcccCCCCC--CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSH--SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDAL 152 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 152 (658)
+.|+.-+.-+.......+ .+.+|..++.++.+.|++++|...+++.++ ..|.++.+|..+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~------------------l~p~~~~a~~~l 77 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYL 77 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc------------------cCCCCHHHHhhh
Confidence 344444444443322221 244667777888888888888888887776 456677888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
..+|.+.|++++|++.|+++.+..+. +..++..+..++...|++++|...|++.++.. +.+......+.....+.+..
T Consensus 78 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1xnfa_ 78 GIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEK 155 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhH
Confidence 88888888888888888888776433 55677777777888888888888888877653 23344433344444455554
Q ss_pred HHHHHHHHHHHh
Q 006154 233 EEALSLYYRMLK 244 (658)
Q Consensus 233 ~~A~~~~~~m~~ 244 (658)
+.+..+......
T Consensus 156 ~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 156 QAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 444444444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.3e-07 Score=76.50 Aligned_cols=124 Identities=14% Similarity=-0.012 Sum_probs=98.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
..+...|+++.|++.|.++ .+|+..++..+...+...|++++|.+.|++..+..+.++.+|..++.+|.+.|++++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3456789999999888764 346778888899999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 552 AFAMFSEMRNVGIAVN----------------KVGYNILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
|+..|++..... +++ ..++..+..++.+.|++++|.+.++.+......
T Consensus 89 A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999887531 111 234556677788888888888888887765333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=3.1e-06 Score=78.22 Aligned_cols=172 Identities=10% Similarity=-0.041 Sum_probs=112.4
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.+.|...+.++...|++++|...+.++.+- ... ....+....+|..+..+|.+.|++++|.+.+++..
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~--------~~~----~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADY--------QKK----AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHH--------HHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--------HHH----cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 445777788899999999999999887751 111 01111123578888899999999999999988776
Q ss_pred hCCC-----ccCHHhHHHHHHHHHh-cCCHhHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 174 VKGH-----SVSIHAWNNFLSHLVK-LNEIGRFWKLYKEMVSC----GYVE-NVNTFNLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 174 ~~g~-----~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
+... .....++..+...|.. .|++++|.+.|++..+. +.++ -..++..+...+.+.|++++|.+.|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 5211 1123455566666644 58888888888877632 2111 1345677778888888888888888887
Q ss_pred HhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 243 LKSGIWPNV------VCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 243 ~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
......... ..+...+..+...|+++.|...+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 765322111 12234444556678888888888873
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.7e-06 Score=67.28 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=49.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
...+.+.|++++|...|+++.+..|.++..|..+..+|...|++++|+..+++..+.+ +.+...|..++.++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 3344555555555555555555555555555555555555555555555555555542 334455555555555555555
Q ss_pred HHHHHHHHHHH
Q 006154 586 QARELMKVMIL 596 (658)
Q Consensus 586 ~A~~~~~~~~~ 596 (658)
+|+..+++.++
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.2e-06 Score=73.47 Aligned_cols=142 Identities=11% Similarity=-0.052 Sum_probs=112.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
...+...|+++.|.+.|.++ .++++.+|..++.+|...|++++|++.|++.++.+ +.+...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 44567899999999999864 33478899999999999999999999999999964 445788999999999999999
Q ss_pred HHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 586 QARELMKVMILHGI--------------IPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 586 ~A~~~~~~~~~~g~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
+|++.|++.+.... .++ ..++..+..++.+.|++++|.+.+++..+....|+.......+..+.+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence 99999999886310 111 345667788899999999999999999886555555555555555544
Q ss_pred C
Q 006154 651 E 651 (658)
Q Consensus 651 ~ 651 (658)
.
T Consensus 168 ~ 168 (192)
T d1hh8a_ 168 Q 168 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.6e-06 Score=66.16 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
-...+.+.|++++|+..|++.++..+ .+...|..+..++...|++++|...++.+.+..+.++..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 35567788999999999998888643 37778888888999999999999999999998888888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCh
Q 006154 550 AEAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~ 568 (658)
++|+..|++..+. .|+.
T Consensus 88 ~~A~~~~~~a~~~--~p~~ 104 (117)
T d1elwa_ 88 EEAKRTYEEGLKH--EANN 104 (117)
T ss_dssp HHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHHHHh--CCCC
Confidence 9999999999885 3443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=6.9e-05 Score=67.80 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQ 586 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 586 (658)
...+...+......+ +...+..|...|.. ..+...+...++...+.| +......+...|.. ..++++
T Consensus 126 ~~~a~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hHHHHHHhhhhhccc--ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 344444444433322 44444555555543 334555556666555543 44444445444443 346666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCC
Q 006154 587 ARELMKVMILHGIIPDYVTYTTLVTRFSK----NCSPEEVIELHDDMVLSGV 634 (658)
Q Consensus 587 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 634 (658)
|+..|++..+.| ++..+..|...|.+ ..+.++|.++|++..+.|.
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 777776666654 34444455555543 3356667777776666553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.47 E-value=0.00025 Score=63.96 Aligned_cols=222 Identities=16% Similarity=0.005 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR----NGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
+..|...+...+++++|+++|++..+.| +...+..|...|.. ..+...|...+....+.+ +......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3333344444444444444444444433 22333333333332 334444555555444433 2222222322
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006154 438 YLCK----SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC----KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGL 509 (658)
Q Consensus 438 ~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 509 (658)
.+.. ..+.+.|...++.....|.. .....+...+. .......+...+...... .+...+..+...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 2222 33455555555555554321 11122222222 123445555555554442 2445555555555
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-
Q 006154 510 CK----DASLDAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK- 580 (658)
Q Consensus 510 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 580 (658)
.. ..+...+...++...+.+ +..+...+...|.. ..++++|...|++..+.| ++..+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g--~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G 227 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 227 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred ccCCCcccccccchhhhhcccccc--ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence 53 345666666666666554 56666666666665 567888888888888876 45566677777765
Q ss_pred ---cCCHHHHHHHHHHHHHcCCC
Q 006154 581 ---FGCYQQARELMKVMILHGII 600 (658)
Q Consensus 581 ---~g~~~~A~~~~~~~~~~g~~ 600 (658)
..+.++|.+.|++..+.|..
T Consensus 228 ~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 228 EGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCccCHHHHHHHHHHHHHCcCH
Confidence 34788888888888877643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.2e-06 Score=69.99 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
....+.+.|++++|...|+++.+..|.+...|..++.+|...|++++|...|+++++.. +.+...|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34556677777777777777777777777777777777777788888888777777743 33456777777777778888
Q ss_pred HHHHHHHHHHHHc
Q 006154 585 QQARELMKVMILH 597 (658)
Q Consensus 585 ~~A~~~~~~~~~~ 597 (658)
++|++.+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888777777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4.3e-06 Score=69.17 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
....|.+.|++++|+..|+++.+..+ .+...|..+...+...|++++|...|+++.+..+.+..+|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 45567789999999999999988754 37788888999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVN-KVGYNIL 574 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~-~~~~~~l 574 (658)
++|...+++..... |+ ...+..+
T Consensus 95 ~eA~~~~~~a~~~~--p~~~~~~~~l 118 (159)
T d1a17a_ 95 RAALRDYETVVKVK--PHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999998853 44 4444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=4.9e-06 Score=76.83 Aligned_cols=136 Identities=11% Similarity=-0.030 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHh-cCCHHHHHHHHHHhccccc-CCcCC-Ch
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKS----GI-WPNVVCFNMIINEACQ-VGDLEFALKLFRKMGVMSG-DSVLP-NS 289 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~-~~~~~-~~ 289 (658)
+|..+...|.+.|++++|.+.+++.... |. .....++..+...|.. .|++++|+..+++...+.. .+.++ -.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 4555555555666666666665554331 00 0012233344444432 4666666666655321111 00011 12
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNV------RTYATLIDGYARGGSSEEALRLCDEMVKR 353 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (658)
.++..+...+...|++++|.+.++++......... ..+...+..+...|+++.|...+++..+.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33555566666666666666666665554211110 11223333444556666666666655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1.8e-06 Score=74.97 Aligned_cols=99 Identities=12% Similarity=-0.036 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
|+...+......+.+.|++++|+..|+++++..+ .+...|..+..+|.+.|++++|...++++.+..|.+..+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 6677777778888888888888888888887643 367778888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 006154 542 GYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|...|++++|+..|+++.+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=3e-06 Score=73.46 Aligned_cols=115 Identities=15% Similarity=0.023 Sum_probs=86.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006154 427 GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 506 (658)
|+...+......+.+.|++++|+..|.+.+.... .+...|..+..+|.+.|++++|+..|+++++..+. +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 5666677778888889999999999988887643 36778888888888899999999999888875332 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
.++...|++++|...|+++.+..+.+...+...+..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 8888899999999888888776544333333333333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=2.7e-06 Score=65.39 Aligned_cols=88 Identities=14% Similarity=-0.076 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
...+.+.|++++|...++++....|.++.+|..++.++.+.|++++|+..|++..+.. +.+...+..++.+|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence 3344455555555555555555555555555555555555555555555555555532 223445555555555555555
Q ss_pred HHHHHHHHH
Q 006154 586 QARELMKVM 594 (658)
Q Consensus 586 ~A~~~~~~~ 594 (658)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.3e-06 Score=66.61 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK---IAEAFAMFSEMRNVGIAVN-KVGYNILINFLC 579 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 579 (658)
.+++.+...+++++|.+.|++....+|.++.++..++.++.+.++ +++|+.+++++...+..|+ ..++..++.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666666666655433 3346666666665432222 224555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006154 580 KFGCYQQARELMKVMIL 596 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~ 596 (658)
+.|++++|++.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 66666666666666665
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2e-06 Score=66.98 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC---YQQARELMKVMILHGIIPD-YVTYTTLVTR 612 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 612 (658)
..++..+...+++++|.+.|++.+..+ +.+..++..++.++.+.++ +++|+++++++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457788889999999999999999965 5577888899999987654 5579999999987543333 2367788999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 613 FSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
|.+.|++++|++.|+++++ +.|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 9999999999999999998 6787655544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=4.6e-06 Score=64.06 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=73.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|...++++.+..|.+..+|..++..|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 445667788888888888888876433 6778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 006154 550 AEAFAMFSEMR 560 (658)
Q Consensus 550 ~~A~~~~~~~~ 560 (658)
++|++.+++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=0.0017 Score=59.59 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006154 98 CAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH 177 (658)
Q Consensus 98 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 177 (658)
..++..+.+.|.++.|..++..+.. |..++..+.+.++++.|.+++.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d--------------------------~~rl~~~~v~l~~~~~avd~~~k~----- 66 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN--------------------------FGRLASTLVHLGEYQAAVDGARKA----- 66 (336)
T ss_dssp -----------CTTTHHHHHHHTTC--------------------------HHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC--------------------------HHHHHHHHHhhccHHHHHHHHHHc-----
Confidence 4566667777888888777765432 566777888888888887777644
Q ss_pred ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 006154 178 SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMI 257 (658)
Q Consensus 178 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 257 (658)
-+..+|..+...+.+..+...+ ++.......+......++..|-..|.+++...+++..... -.++...++.+
T Consensus 67 -~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L 139 (336)
T d1b89a_ 67 -NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 139 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHH
Confidence 2567888888888777666443 2222333345555667788888888888888888876543 23455667778
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006154 258 INEACQVGDLEFALKLFRK 276 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~ 276 (658)
+..|++.+ .++-.+.+..
T Consensus 140 ~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 140 AILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHhC-hHHHHHHHHh
Confidence 88777754 4444444544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.8e-05 Score=62.26 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-----hHHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA-VN-----KVGYNILIN 576 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~~ 576 (658)
..+...+...|++++|...|+++.+..|.+..++..+..+|.+.|++++|+..++++++.... +. ..+|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666666666666666666666542100 00 124455555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+...+++++|++.|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.8e-05 Score=62.74 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
|..+..+|.+.|++++|...++.+....|.++.+|..++.+|...|++++|+..|+++.+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555555555
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.5e-05 Score=61.49 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-----HHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII-PD-----YVTYT 607 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~-----~~~~~ 607 (658)
..+..++..+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|++.++++++.... +. ..+|.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677889999999999999999999964 456888999999999999999999999998863110 11 24677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 608 TLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
.+...+...+++++|++.+++.+.. .|+......+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 118 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 7888899999999999999998873 5565444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.3e-06 Score=85.72 Aligned_cols=226 Identities=12% Similarity=-0.068 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 377 GALFVLSDMIDKHICPD-HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSM 455 (658)
Q Consensus 377 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (658)
+|.+.|++..+. .|+ ...+..+...+...|++++| +++++..++. ....++... ..-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~--~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQ--DLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHH--HHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHH--HHHHHHHHHHHHHHHHh
Confidence 566777776653 232 23444455556666666554 5555443211 001111110 00011133445555555
Q ss_pred HHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 006154 456 IVRGLIPDIITYGTLIDG--YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533 (658)
Q Consensus 456 ~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 533 (658)
.+....++.......... ....+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+....... ..
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~ 152 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQ 152 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--HH
Confidence 543322332222111111 122334444444443333321 2234455556666666666666666665554332 23
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
.++..++..+...|++++|...|++..+.. +.+...|+.|+..+...|+..+|+..|.+.+... +|-..++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 455566666777777777777777776642 2335667777777777777777777777766542 44555666665555
Q ss_pred Hh
Q 006154 614 SK 615 (658)
Q Consensus 614 ~~ 615 (658)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.00013 Score=60.60 Aligned_cols=133 Identities=10% Similarity=-0.037 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
.+......+.+.|++++|+..|.+.++......... +.-......+ ...+|..+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence 344455566777777777777777665422111000 0000000000 1234666778888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
+.|++++|+..++..++..+. +...+..+..++...|++++|...|+.+.+..|.+..+...+.....+.+...
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886433 77888889999999999999999999999998888887777766655444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0068 Score=55.45 Aligned_cols=134 Identities=15% Similarity=0.094 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (658)
+..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 334444556666677777777777764432 456666667777777766665433 24456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhc
Q 006154 225 ALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 302 (658)
.+.+.....-| .+...+...+......++..|-..|.+++...+++. .... -..+...++.++..|++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~---~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEA---ALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---HTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHH---HHcC-CccchHHHHHHHHHHHHh
Confidence 66655444332 111222223444445566666666666666666665 2211 123444555566655554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=0.0002 Score=58.17 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+|+.++.+|.+.|++++|+..++++++.+ +.+..+|..++.++...|++++|+..|++.++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555432 22445555555555555555555555555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=3.7e-06 Score=84.25 Aligned_cols=116 Identities=11% Similarity=-0.104 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
+...+..+...+.+.|+.+.|...+....... ....+..+...+...|++++|...++++.+..|.+...|+.|+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 34445555666667777777776665554321 124556677777778888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 582 (658)
+...|+..+|...|.+.+... +|-..++..|...+.+..
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 888888888888888887754 456667777776665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=0.00015 Score=58.89 Aligned_cols=74 Identities=14% Similarity=-0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 645 (658)
.+|..++.+|.+.|++++|++.++++++.. +.+..+|..+..++...|++++|+..|++.++ +.|+.......+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 357778999999999999999999999863 44788999999999999999999999999998 567654443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=0.00034 Score=57.83 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|+.+..+|.+.|++++|+..+++.++.. +.+..+|..++.++...|++++|+..|++++.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555544432 23344444445555555555555555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0001 Score=61.16 Aligned_cols=65 Identities=11% Similarity=-0.132 Sum_probs=36.1
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
....|..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|++.|+++++.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445555555555666666666666555542 234455555555666666666666666655553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.82 E-value=5.3e-05 Score=60.93 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN----------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
.+.+++|...++.+.+..|.++.++..+..++... +.+++|+..|+++++.. +.+..+|..++.+|...
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 34455566666666555555555555555555432 33455666666666532 23455566666665544
Q ss_pred C-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006154 582 G-----------CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 582 g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 633 (658)
| .+++|.+.|++.++. .|+...|..-+..+ .+|.+++.+..+.|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 3 357777777777763 56655554443332 34556666665554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.00053 Score=57.02 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL-----SGVSPDNQTYN 642 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 642 (658)
..+..++..+...|++++|+..+++++... +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+-.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 345667778888888888888888888753 34677788888888888888888888888744 38888775533
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.00029 Score=58.31 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
...+..+..++.+.|++++|...++.+.+..|.++.+|..++.+|...|++++|+..|+++.+.. +.+......+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666777777888888888887777777777778788888888888888888888777743 23445555555554
Q ss_pred HhcCCH
Q 006154 579 CKFGCY 584 (658)
Q Consensus 579 ~~~g~~ 584 (658)
.+....
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=0.00011 Score=58.97 Aligned_cols=115 Identities=14% Similarity=0.008 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK----------DASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
+.+.+++|+..|+...+..+ .+...+..+..++.. .+.+++|...++++.+..|.+..+|..++.+|..
T Consensus 9 r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 44456666666666665432 244555555555542 2445788888888888888888888888888876
Q ss_pred cCC-----------HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 546 NGK-----------IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 546 ~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
.|+ +++|.+.|++..+ +.|+...|..-+..+ .+|.+++.+..+.|+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 653 6889999999988 457766555443333 456677777666653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.70 E-value=0.00048 Score=56.84 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKV---EKKPN-----------LVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
...+......+.+.|++++|+..|.+.... ....+ ..+|..+..+|.+.|++++|...++.+....
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 455666778889999999999999887642 11111 1345567778899999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 582 (658)
|.+..+|..++.++...|++++|...|+++.... +.+......+..+..+.+
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999854 334555555544444444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=3.7e-05 Score=68.83 Aligned_cols=121 Identities=14% Similarity=0.030 Sum_probs=69.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHH
Q 006154 510 CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.+.|++++|...+++..+..|.+...+..++..|+..|++++|...++...+. .|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence 35677777777777777777777777777777777777777777777777764 343 333444444443333333322
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111111111122233333444566677777777777777663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00044 Score=57.52 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCcHh
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK-----RGLMPNNV 360 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~ 360 (658)
..+..+...+.+.|++++|...++++.+.. +-+...|..++.+|...|+.++|++.|+++.. .|+.|...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 456667777777778888877777777765 56777777777777777777777777777633 46666644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=5e-05 Score=67.91 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=84.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA 554 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 554 (658)
.+.|++++|+..+++.++..+. +...+..+...++..|++++|...++...+..|.+...+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 4568888888888888886443 778888888888888888888888888888887777777777666655444444332
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2221111222233444455566778889999999999888764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.0016 Score=52.71 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=62.7
Q ss_pred hHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006154 535 TYNTL--INGYFINGKIAEAFAMFSEMRNVGI-AVN----------KVGYNILINFLCKFGCYQQARELMKVMILH---- 597 (658)
Q Consensus 535 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 597 (658)
+|..+ +..+...|++++|+..|++.++... .|+ ...|+.+..+|.+.|++++|++.+++.+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455566777777777777765210 111 345777788888888888888888777642
Q ss_pred -CCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 598 -GIIPD-----YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 598 -g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...++ ...+..+..+|...|++++|++.|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22456677788888888888888888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.0042 Score=50.12 Aligned_cols=89 Identities=13% Similarity=-0.017 Sum_probs=60.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLL------------DAITYNTLINGYFINGKIAEAFAMFSEMRNV-----GIAVN--- 567 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~--- 567 (658)
.+...|++++|...|++..+..+. ...+|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 334455666666666555543222 1356778888888888888888888887641 11222
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 568 --KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 568 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...++.+..+|...|++++|+..|+++++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22467788999999999999999998775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0033 Score=45.61 Aligned_cols=84 Identities=19% Similarity=0.091 Sum_probs=61.9
Q ss_pred CCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
-+++.+..++.++.+.|++++|...+++.++. ........+....++..|..+|.+.|++++|++.+++
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~-----------~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQ-----------LDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------HhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 36778889999999999999999999988763 0000011223356788899999999999999999999
Q ss_pred HHhCCCccCHHhHHHH
Q 006154 172 LKVKGHSVSIHAWNNF 187 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~l 187 (658)
+++..+. ++.+++.+
T Consensus 72 aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 72 LLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHCTT-CHHHHHHH
T ss_pred HHHhCcC-CHHHHHHH
Confidence 9887543 45555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.013 Score=42.23 Aligned_cols=72 Identities=10% Similarity=-0.024 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVE-----KKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
-.+...+.+.|++++|+..|++..+.. ..+ ...++..+..++.+.|++++|...++++.+..|.+..+++.+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 344555566666666666666554321 011 133455566666666666666666666666655555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.045 Score=42.24 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCC
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK----NCS 618 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~ 618 (658)
.+.++|...+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555543 33333344444432 234556666666665544 23333334444433 345
Q ss_pred hHHHHHHHHHHHHCC
Q 006154 619 PEEVIELHDDMVLSG 633 (658)
Q Consensus 619 ~~~A~~~~~~m~~~g 633 (658)
.++|.+++++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.049 Score=42.02 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCC
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGC 583 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 583 (658)
..+.++|.+.+++..+.+ ++.+...|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 36 ~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred ccCHHHHHHHHhhhhccc--chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 345666666666666554 45555555555554 346777777777777765 34445555555554 346
Q ss_pred HHHHHHHHHHHHHcC
Q 006154 584 YQQARELMKVMILHG 598 (658)
Q Consensus 584 ~~~A~~~~~~~~~~g 598 (658)
.++|.+++++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 777777777777765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.98 E-value=0.18 Score=37.00 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
+..++.+.++|+-+.-.++++.+.+.+ .|++.....+..+|.+.|...++-+++.++-+.|+
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 333444555555555555555544432 44555555555555555555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.72 Score=43.88 Aligned_cols=415 Identities=10% Similarity=-0.025 Sum_probs=201.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh--cCCHhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHH
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK--LNEIGRFWKLYKEMVSCGYVE-NVNTFNLVIYALC 227 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 227 (658)
..+....+.|+...+.++...+... | ...|-..-..-.. .....++.. -+.+..-.| ....-...+..+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~---Fl~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTN---FVRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHH---HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHH---HHHHCCCChhHHHHHHHHHHHHH
Confidence 4555666777777777777666321 1 2233322222222 223333222 222321111 1112233344556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
+.++++.....+. . .+++...-.....+....|+.++|...+..+ -......|+ .
T Consensus 84 ~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l--W~~~~~~p~------------------~ 138 (450)
T d1qsaa1 84 RREDWRGLLAFSP----E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL--WLTGKSQPN------------------A 138 (450)
T ss_dssp HTTCHHHHHHHCC----S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH--HSCSSCCCT------------------H
T ss_pred hccCHHHHHHhcc----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--HhcCCCCch------------------H
Confidence 6666655443321 1 1223333345555666667777776666652 111112221 2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 308 AEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
...++..+.+.| ..+...+-.-+......|+...|..+...+... ........+....... .+.... ..
T Consensus 139 c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~---~~~~~~---~~ 207 (450)
T d1qsaa1 139 CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPN---TVLTFA---RT 207 (450)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGG---GHHHHH---HH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChH---hHHHHH---hc
Confidence 223333334333 233333333444455566776666665433211 2222333333332222 221111 11
Q ss_pred CCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCC
Q 006154 388 KHICPDHFTYSILTKGLCR--NGCVKQAFKLHNQVLEEHMVGDAYSYNILI----NYLCKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
...+......+..++.+ ..+.+.+..++......... +...+..+- ..+...+..+.+...+......+.
T Consensus 208 --~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~- 283 (450)
T d1qsaa1 208 --TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ- 283 (450)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-
T ss_pred --CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc-
Confidence 11233333333333332 34677777777777665433 222222222 222334566777777776665543
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
+.....-.+......+++..+...+..|... ......-.--+..++...|+.+.|...|..+... . ..|.-|..
T Consensus 284 -~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~-~fYG~LAa 357 (450)
T d1qsaa1 284 -STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R-GFYPMVAA 357 (450)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C-SHHHHHHH
T ss_pred -chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C-ChHHHHHH
Confidence 3333334444455677888888888776532 2223333445667777888888888888877643 1 23333322
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-hHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVN-KVG-----YNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
. +.|..-. +....++++ ... -...+..+...|....|...|..+... .+......+.....+
T Consensus 358 ~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~ 425 (450)
T d1qsaa1 358 Q--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFN 425 (450)
T ss_dssp H--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred H--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 1 1221000 000000000 001 113456677899999999999988754 245566677778889
Q ss_pred CCChHHHHHHHHHHH
Q 006154 616 NCSPEEVIELHDDMV 630 (658)
Q Consensus 616 ~g~~~~A~~~~~~m~ 630 (658)
.|.++.|+....+..
T Consensus 426 ~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 426 NQWWDLSVQATIAGK 440 (450)
T ss_dssp TTCHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHH
Confidence 999999997776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.96 E-value=0.44 Score=34.92 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL 530 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 530 (658)
.+...++.+.+.|+-++-.++++.+.+. -+|++.....+..+|.+.|...++.+++.++.+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344455555566666666666555442 345555555666666666666666666666555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=2 Score=40.61 Aligned_cols=409 Identities=14% Similarity=0.081 Sum_probs=211.9
Q ss_pred HHHHHhccCCchhhhhhhCCC-----CCHHHHHHHHHh-c-CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCC
Q 006154 37 RAICVNLRQRKWKILEQMAPS-----LTNSLVNRVVSE-F-RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRR 109 (658)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~vl~~-~-~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (658)
......+++.++.....+... |.|-+-...|.. + ..++.....|. .+.++.+........-+..|.+.++
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFV---RANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHHhccC
Confidence 345566777777654443322 444443333432 2 22344444443 3333333333334445667777777
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006154 110 FDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLS 189 (658)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 189 (658)
++..... ++..|.+...-.....+....|+.+.|.+.+..+...|.. .+..+..+
T Consensus 88 w~~~~~~----------------------~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l-- 142 (450)
T d1qsaa1 88 WRGLLAF----------------------SPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKL-- 142 (450)
T ss_dssp HHHHHHH----------------------CCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHH--
T ss_pred HHHHHHh----------------------ccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHH--
Confidence 6543221 2355677777788889999999999999988888776543 33334444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 190 HLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF 269 (658)
Q Consensus 190 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 269 (658)
+..+.+.|. .+...+-.-+......|+...|..+...+.. .........+.... +...
T Consensus 143 --------------~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~---~p~~ 200 (450)
T d1qsaa1 143 --------------FSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLAN---NPNT 200 (450)
T ss_dssp --------------HHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHH---CGGG
T ss_pred --------------HHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHh---ChHh
Confidence 444444332 3344444445555566777777776554321 12223333333332 2223
Q ss_pred HHHHHHHhcccccCCcCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHH----HHHHHHhcCChHHH
Q 006154 270 ALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK--LGRVEFAEEIRYAMIKAGIDCNVRTYAT----LIDGYARGGSSEEA 343 (658)
Q Consensus 270 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A 343 (658)
+...... ..++......+..++.+ ..+.+.|..++....... ..+...... +...+...+..+.+
T Consensus 201 ~~~~~~~--------~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a 271 (450)
T d1qsaa1 201 VLTFART--------TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQ 271 (450)
T ss_dssp HHHHHHH--------SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHH
T ss_pred HHHHHhc--------CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHH
Confidence 3332222 11122222222233222 246677777777766543 222222222 22223345666777
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
...++.....+. +.......+......+++..+...+..|... ........--+.+++...|+.++|...|..+...
T Consensus 272 ~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 272 AKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 777777666543 3333333444556667888888887776432 2223334445667777888888888888877642
Q ss_pred CCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCC--CC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006154 424 HMVGDAYSYNILINYLCKSNN-LAAAKQLLSSMIVRGLI--PD-IIT---YGTLIDGYCKGGNIEGAVQVYENMKKVEKK 496 (658)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~--p~-~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (658)
++ -|..|... +.|. +.- ....++ +. ... -...+..+...|+...|...+..+...
T Consensus 349 ---~~--fYG~LAa~--~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--- 410 (450)
T d1qsaa1 349 ---RG--FYPMVAAQ--RIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--- 410 (450)
T ss_dssp ---CS--HHHHHHHH--HTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred ---CC--hHHHHHHH--HcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---
Confidence 22 23222211 1111 000 000000 00 000 012244566778888888888777653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
.+......+.....+.|.++.|.......
T Consensus 411 ~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 411 KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 24555566677777888888887665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.54 Score=34.77 Aligned_cols=71 Identities=8% Similarity=-0.147 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006154 566 VNKVGYNILINFLCKFG---CYQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQ 639 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 639 (658)
|+..|--..+.++.++. +.++++.++++....+ +.+ ...+..+.-+|.+.|++++|.+.++.+++ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 33444444555555443 3446666666665432 112 23444455556666666666666666665 455543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=1.1 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 497 PNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIGLLD-AITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
++..+--....++.+.. +.+++..+++.+.+.++.+ ...+..|.-+|.+.|++++|...++.+++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444444444454433 3456666666666655543 35556666666677777777777776666
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.46 E-value=0.94 Score=31.36 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
+.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++..+.+ ..++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 34455555666666666777777777777777777777777777766654 223344554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.15 E-value=3.8 Score=28.25 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
+.=++.+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+.-.+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34456666677777777788888888888888888888888888877766443444555544
|