Citrus Sinensis ID: 006364
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | 2.2.26 [Sep-21-2011] | |||||||
| Q84MA3 | 763 | Pentatricopeptide repeat- | yes | no | 0.979 | 0.832 | 0.594 | 0.0 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.972 | 0.725 | 0.347 | 1e-117 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.973 | 0.779 | 0.334 | 1e-109 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.962 | 0.758 | 0.354 | 1e-108 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.972 | 0.612 | 0.350 | 1e-103 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.890 | 0.827 | 0.321 | 1e-103 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.964 | 0.789 | 0.336 | 1e-103 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.972 | 0.755 | 0.325 | 1e-102 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.966 | 0.730 | 0.342 | 1e-102 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.952 | 0.708 | 0.321 | 1e-102 |
| >sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/638 (59%), Positives = 495/638 (77%), Gaps = 3/638 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MY K+G+FD ALCIF NL +PD+VSWNT+LSGF+ + AL+F +RM GVVFDA TY
Sbjct: 118 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTY 177
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
STALSFC+ EGFL GLQL S +VK GL+S++ VGN+ ITMYSR G ARRVFDEM
Sbjct: 178 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSF 237
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD +SWN++LSG +Q+G +G EA++ +MMR+G+ LDHVSFTS + C HE +L+L +Q
Sbjct: 238 KDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQ 297
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IHG+ IK GY + + VGN+LMS YSKC V VF +M +RNV+SWTTMIS N++DAV
Sbjct: 298 IHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 357
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
S+F MR DGV PN+VTF+GLI+A+ +KEG IHGLCIKT F+SEPSV N IT+Y
Sbjct: 358 SIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLY 417
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE+++D++K F++++ REIISWNA+ISG+AQNG S A++ F E+ PN YTFGS
Sbjct: 418 AKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGS 477
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ AEDIS+K GQRCH+H++K+GL+S P+V SALLDMY KRG+I ES++VFNE +
Sbjct: 478 VLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQ 537
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K++F WT+IISA + HGD+E+VMN F +M + V PD +TFLSVLT C R GM+ KG +
Sbjct: 538 KNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEI 597
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+ M++ Y++EPS +HYSCMVDMLGR GRL+EAEEL+ ++PGGPG S+LQS+LG+CR+HG
Sbjct: 598 FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 657
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+MG ++A+ M+M+P SGSYV M N+YAEK +W+ A +RK M+ K V KE GFSW
Sbjct: 658 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWI 717
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEM 635
DVGD +G + GFSSGD +HP+S+EIYRM E +G EM
Sbjct: 718 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEM 755
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/648 (34%), Positives = 376/648 (58%), Gaps = 18/648 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALSFALRMNLIGVVFDA 57
++ Y K F +F+ + ++V+W T++SG+ ++ D+ L+ +RM G ++
Sbjct: 135 VDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNS 194
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
T++ AL + GLQ+H+++VK GLD + V N+LI +Y + G + +AR +FD+
Sbjct: 195 FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDK 254
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
K V+WN+++SGY +G +EA+ M +RL SF S C + K L
Sbjct: 255 TEVKSVVTWNSMISGYAANG-LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRF 313
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDR-NVISWTTMISM-- 234
+Q+H +K G+ ++ LM YSKC DA ++F+ + NV+SWT MIS
Sbjct: 314 TEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFL 373
Query: 235 ---NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPS 291
+E+AV LF EM+ GV PN+ T+ ++ A+ + + + +H +KTN+ +
Sbjct: 374 QNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSST 429
Query: 292 VCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKES 351
V L+ Y + ++++ KVF + ++I++W+A+++GYAQ G + AA++ F + K
Sbjct: 430 VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG 489
Query: 352 -KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410
KPN +TF S+LN V AA + S+ G++ H IK LDS V SALL MY K+G+I
Sbjct: 490 IKPNEFTFSSILN-VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIES 548
Query: 411 SQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470
++ VF +EK +W ++IS A+HG ++ FKEM+ + V+ D +TF+ V C
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH 608
Query: 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQ 530
G++ +G FD M++D I P+ +H SCMVD+ R G+LE+A +++ +P G ++ +
Sbjct: 609 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWR 668
Query: 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590
++L ACR+H E+G A+ ++ M+P S +YVL+SN+YAE GDW+ A +RK M +
Sbjct: 669 TILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERN 728
Query: 591 VRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYL 638
V+KE G+SW +V + + F +GD +HP ++IY E L + +K L
Sbjct: 729 VKKEPGYSWIEVK--NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/645 (33%), Positives = 364/645 (56%), Gaps = 14/645 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDD---ALSFALRMNLIGVVFDA 57
++++C+ G D+A +F +++ V ++T+L GF K D AL F +RM V
Sbjct: 76 VSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVV 135
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
++ L C D G ++H L+VK G +++ L MY++ ++ EAR+VFD
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR 195
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
MP +D VSWN I++GY+Q+G A+ + M + L+ ++ S A + + +
Sbjct: 196 MPERDLVSWNTIVAGYSQNG-MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISM--- 234
GK+IHG +++ G+ + V++ L+ Y+KC A ++F M +RNV+SW +MI
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 235 --NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSV 292
N ++A+ +F++M +GV P DV+ +G +HA + ++ GR IH L ++ SV
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374
Query: 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKES- 351
N LI+MY + + + + +F +L R ++SWNA+I G+AQNG + A+ F + +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434
Query: 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES 411
KP+ +T+ SV+ A+ AE H + H +++ LD + V +AL+DMY K G+I +
Sbjct: 435 KPDTFTYVSVITAI--AELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 412 QRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471
+ +F+ E+ W A+I HG ++ + F+EM+ ++P+ +TFLSV++ C +
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 472 GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531
G++ G F M ++Y IE S DHY MVD+LGR GRL EA + + Q+P P ++V +
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591
+LGAC+IH NV E+ A+ L ++ P G +VL++N+Y WE V +R M +G+
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 592 RKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
RK G S ++ + +H F SG HP S++IY E L +K
Sbjct: 673 RKTPGCSMVEIK--NEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/652 (35%), Positives = 370/652 (56%), Gaps = 28/652 (4%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDA----LSFALRMNLIGVVFD 56
+N+YC G A F+++ N D+ +WN ++SG+ ++ ++ F+L M G+ D
Sbjct: 93 VNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPD 152
Query: 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFD 116
T+ + L C + G ++H L +KFG +VYV +LI +YSR+ + AR +FD
Sbjct: 153 YRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFD 209
Query: 117 EMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLR-LDHVSFTSAASACGHEKNL 175
EMP +D SWNA++SGY Q G+ EA+ + GLR +D V+ S SAC +
Sbjct: 210 EMPVRDMGSWNAMISGYCQSGN-AKEAL-----TLSNGLRAMDSVTVVSLLSACTEAGDF 263
Query: 176 ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-- 233
G IH SIK G + + V N L+ Y++ D KVF RM+ R++ISW ++I
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAY 323
Query: 234 -MNRED--AVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTN-FLSE 289
+N + A+SLF+EMRL + P+ +T I L +S ++ R + G ++ FL +
Sbjct: 324 ELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLED 383
Query: 290 PSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK 349
++ N ++ MYA+ + + VF+ L ++ISWN +ISGYAQNG + A++ + +++
Sbjct: 384 ITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIE-MYNIME 442
Query: 350 ES---KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406
E N T+ SVL A A +L+ G + H ++K GL D V ++L DMYGK G
Sbjct: 443 EEGEIAANQGTWVSVLPACSQAG--ALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCG 500
Query: 407 SIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466
+ ++ +F + + W +I+ HG E + FKEM ++GV+PD ITF+++L+
Sbjct: 501 RLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560
Query: 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGL 526
C +G++ +G+ F+ M DY I PS HY CMVDM GR G+LE A + + + P
Sbjct: 561 ACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDA 620
Query: 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586
S+ +LL ACR+HGNV++G+ ++ L ++EP G +VL+SN+YA G WE V +R
Sbjct: 621 SIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIA 680
Query: 587 KSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYL 638
KG+RK G+S +V + + F +G+ THP EE+YR L +++K +
Sbjct: 681 HGKGLRKTPGWSSMEVD--NKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 227/648 (35%), Positives = 345/648 (53%), Gaps = 18/648 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFE---KSDDALSFALRMNLIGVVFDA 57
++MY K + + A +F L + V WN ++ G+ +S + + M G D
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDD 428
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
T+++ LS C G Q HS+I+K L ++VGNAL+ MY++ G L +AR++F+
Sbjct: 429 FTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFER 488
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
M ++D+V+WN I+ Y QD + EA M G+ D S AC H L
Sbjct: 489 MCDRDNVTWNTIIGSYVQDENES-EAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQ 547
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---- 233
GKQ+H +S+K G + G+ L+ YSKC + DA KVF + + +V+S +I+
Sbjct: 548 GKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ 607
Query: 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVC 293
N E+AV LF+EM GV P+++TF ++ A + G HG K F SE
Sbjct: 608 NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYL 667
Query: 294 N-CLITMYARFESMQDSEKVFDELSC-REIISWNALISGYAQNGLSLAAVQAFFGVIKES 351
L+ MY M ++ +F ELS + I+ W ++SG++QNG A++ F+ ++
Sbjct: 668 GISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALK-FYKEMRHD 726
Query: 352 K--PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409
P+ TF +VL SL+ G+ HS I + D D + + L+DMY K G +
Sbjct: 727 GVLPDQATFVTVLRVCSVLS--SLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784
Query: 410 ESQRVFNETQEKSEF-AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468
S +VF+E + +S +W ++I+ A++G E + F M + PD ITFL VLT C
Sbjct: 785 GSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTAC 844
Query: 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSV 528
G + GR +F+ M+ Y IE DH +CMVD+LGR G L+EA++ + P +
Sbjct: 845 SHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARL 904
Query: 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588
SLLGACRIHG+ GE A+ L+++EP S +YVL+SN+YA +G WE LRK M+
Sbjct: 905 WSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRD 964
Query: 589 KGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+GV+K G+SW DV H F++GD +H +I E L MK
Sbjct: 965 RGVKKVPGYSWIDVE--QRTHIFAAGDKSHSEIGKIEMFLEDLYDLMK 1010
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/656 (32%), Positives = 351/656 (53%), Gaps = 79/656 (12%)
Query: 56 DAVTYSTALSFCLDHE-GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRV 114
D+ ++ L C+ + ++ +H+ ++K G +E+++ N LI YS+ G L + R+V
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 115 FDEMPNKDSVSWNAILSGYTQDG------------------------------DYGVEAI 144
FD+MP ++ +WN++++G T+ G D EA+
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137
Query: 145 LALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTY 204
M ++G L+ SF S SAC ++ G Q+H + K + + V +G+ L+ Y
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197
Query: 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNRE-----DAVSLFKEMRLDGVCPNDVTFI 259
SKC DA +VF M DRNV+SW ++I+ + +A+ +F+ M V P++VT
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257
Query: 260 GLIHAISIGNLVKEGRMIHGLCIKTNFL-SEPSVCNCLITMYARFESMQDSEKVFDELSC 318
+I A + + +K G+ +HG +K + L ++ + N + MYA+ ++++ +FD +
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Query: 319 REII-------------------------------SWNALISGYAQNGLSLAAVQAFFGV 347
R +I SWNALI+GY QNG + A+ F +
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377
Query: 348 IKESK-PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGL------DSDPIVGSALLD 400
+ES P Y+F ++L A ++ L G + H H++K G + D VG++L+D
Sbjct: 378 KRESVCPTHYSFANILKACADLAELHL--GMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Query: 401 MYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460
MY K G + E VF + E+ +W A+I A++G + F+EM G +PD IT
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495
Query: 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520
+ VL+ CG G + +GRH F SM +D+ + P DHY+CMVD+LGR G LEEA+ ++ ++
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
Query: 521 PGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580
P P + SLL AC++H N+ +G+ +A+ L+++EP+ SG YVL+SN+YAE G WE V
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 581 ILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+RK M+ +GV K+ G SW + D H F D +HPR ++I+ + + L +EM+
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHD--HVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/644 (33%), Positives = 351/644 (54%), Gaps = 19/644 (2%)
Query: 16 IFNNLNNPDIVSWNTVLSGF---EKSDDALS-FALRMNLIGVVFDAVTYSTALSFCLDHE 71
IF ++ PD+ +N ++ GF E +LS FA + ++ TY+ A+S
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFR 133
Query: 72 GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131
G +H V G DSE+ +G+ ++ MY ++ R+ +AR+VFD MP KD++ WN ++S
Sbjct: 134 DDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193
Query: 132 GYTQDGDYGVEAILALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGY 190
GY ++ Y VE+I +++ + RLD + A + L LG QIH ++ K G
Sbjct: 194 GYRKNEMY-VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC 252
Query: 191 GTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMI-----SMNREDAVSLFKE 245
+H V +S YSKC + +FR +++++ MI + E ++SLFKE
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312
Query: 246 MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFES 305
+ L G T + L+ L+ IHG C+K+NFLS SV L T+Y++
Sbjct: 313 LMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNE 369
Query: 306 MQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNA 364
++ + K+FDE + + SWNA+ISGY QNGL+ A+ F + K E PN T +L+A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEF 424
+SL G+ H + +S V +AL+ MY K GSI E++R+F+ +K+E
Sbjct: 430 CAQLGALSL--GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV 487
Query: 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484
W +IS HG + +N F EM N G+ P +TFL VL C G++ +G +F+SM
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547
Query: 485 LKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEM 544
+ Y EPS HY+CMVD+LGR G L+ A + + + PG SV ++LLGACRIH + +
Sbjct: 548 IHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNL 607
Query: 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGD 604
+++ L +++P G +VL+SN+++ ++ A +R+ K + + K G++ ++G+
Sbjct: 608 ARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGE 667
Query: 605 IDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRERAIAL 648
H F+SGD +HP+ +EIY E L +M+ + E +AL
Sbjct: 668 TP--HVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/648 (32%), Positives = 353/648 (54%), Gaps = 18/648 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDA-LSFALRMNLI--GVVFDA 57
++ Y K G D A +F+ L V+W T++SG K + +S L L+ VV D
Sbjct: 190 IDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDG 249
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
ST LS C G Q+H+ I+++GL+ + + N LI Y + GR++ A ++F+
Sbjct: 250 YILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNG 309
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
MPNK+ +SW +LSGY Q+ + EA+ M + GL+ D + +S ++C L
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHK-EAMELFTSMSKFGLKPDMYACSSILTSCASLHALGF 368
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMI----- 232
G Q+H +IK G V N L+ Y+KC+ DA KVF +V+ + MI
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428
Query: 233 ---SMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE 289
+A+++F++MR + P+ +TF+ L+ A + + + IHGL K +
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488
Query: 290 PSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGV-I 348
+ LI +Y+ ++DS VFDE+ ++++ WN++ +GY Q + A+ F + +
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL 548
Query: 349 KESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI 408
+P+ +TF +++ A G + L GQ H ++K GL+ +P + +ALLDMY K GS
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQL--GQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 409 FESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468
++ + F+ + W ++IS+ A HG+ + + ++M ++G+ P+ ITF+ VL+ C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSV 528
G++ G F+ ML+ + IEP +HY CMV +LGR GRL +A EL+ ++P P V
Sbjct: 667 SHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725
Query: 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588
+SLL C GNVE+ E A+ + +P SGS+ ++SN+YA KG W +R+ MK
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785
Query: 589 KGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+GV KE G SW +G +H F S D +H ++ +IY + + L +++
Sbjct: 786 EGVVKEPGRSW--IGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 221/645 (34%), Positives = 348/645 (53%), Gaps = 19/645 (2%)
Query: 4 YCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALSFALRMNLIGVVFDAVTY 60
Y + G+ D +F+ + D V WN +L+G+ K D + M + + +AVT+
Sbjct: 183 YLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTF 242
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
LS C G+QLH L+V G+D E + N+L++MYS+ GR +A ++F M
Sbjct: 243 DCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
D+V+WN ++SGY Q G E++ EM+ G+ D ++F+S + +NLE KQ
Sbjct: 303 ADTVTWNCMISGYVQSG-LMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQ 361
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNRE--- 237
IH ++ + + + L+ Y KC A +F + + +V+ +T MIS
Sbjct: 362 IHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGL 421
Query: 238 --DAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNC 295
D++ +F+ + + PN++T + ++ I I +K GR +HG IK F + ++
Sbjct: 422 YIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCA 481
Query: 296 LITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAF--FGVIKESKP 353
+I MYA+ M + ++F+ LS R+I+SWN++I+ AQ+ AA+ F GV
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGV----SG 537
Query: 354 NAYTFGSVLNAVGAAEDI-SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412
Y S+ A+ A ++ S G+ H +IK L SD S L+DMY K G++ +
Sbjct: 538 ICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAM 597
Query: 413 RVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEM-ENKGVRPDSITFLSVLTVCGRN 471
VF +EK+ +W +II+A HG + + F EM E G+RPD ITFL +++ C
Sbjct: 598 NVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHV 657
Query: 472 GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531
G + +G F SM +DY I+P +HY+C+VD+ GR GRL EA E V +P P V +
Sbjct: 658 GDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGT 717
Query: 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591
LLGACR+H NVE+ E + LM ++P+ SG YVL+SN +A +WE V +R MK + V
Sbjct: 718 LLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREV 777
Query: 592 RKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+K G+SW ++ H F SGD HP S IY + L E++
Sbjct: 778 QKIPGYSWIEIN--KRTHLFVSGDVNHPESSHIYSLLNSLLGELR 820
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/632 (32%), Positives = 347/632 (54%), Gaps = 15/632 (2%)
Query: 3 MYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDD---ALSFALRMNLIGVVFDAVT 59
MY G +A +F+ + + WN +++ KS D ++ +M GV D+ T
Sbjct: 138 MYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYT 197
Query: 60 YSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119
+S G QLH I+K G VGN+L+ Y + R+ AR+VFDEM
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257
Query: 120 NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGK 179
+D +SWN+I++GY +G + + ++M+ G+ +D + S + C + + LG+
Sbjct: 258 ERDVISWNSIINGYVSNG-LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGR 316
Query: 180 QIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNRE- 237
+H + +K + N L+ YSKC A VFR M DR+V+S+T+MI+ RE
Sbjct: 317 AVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREG 376
Query: 238 ---DAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCN 294
+AV LF+EM +G+ P+ T +++ + L+ EG+ +H + + + V N
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN 436
Query: 295 CLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESK-- 352
L+ MYA+ SMQ++E VF E+ ++IISWN +I GY++N + A+ F +++E +
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS 496
Query: 353 PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412
P+ T VL A + + G+ H +I++ G SD V ++L+DMY K G++ +
Sbjct: 497 PDERTVACVLPACASLS--AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAH 554
Query: 413 RVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472
+F++ K +WT +I+ HG + + F +M G+ D I+F+S+L C +G
Sbjct: 555 MLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSG 614
Query: 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSL 532
++ +G F+ M + IEP+ +HY+C+VDML R G L +A + +P P ++ +L
Sbjct: 615 LVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGAL 674
Query: 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592
L CRIH +V++ E++A+ + ++EP +G YVLM+N+YAE WE V LRK + +G+R
Sbjct: 675 LCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLR 734
Query: 593 KEVGFSWADVGDIDGLHGFSSGDNTHPRSEEI 624
K G SW ++ ++ F +GD+++P +E I
Sbjct: 735 KNPGCSWIEIK--GRVNIFVAGDSSNPETENI 764
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | ||||||
| 225445472 | 773 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.833 | 0.709 | 0.0 | |
| 224141133 | 770 | predicted protein [Populus trichocarpa] | 0.992 | 0.835 | 0.698 | 0.0 | |
| 449519412 | 781 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.823 | 0.669 | 0.0 | |
| 297738941 | 760 | unnamed protein product [Vitis vinifera] | 0.961 | 0.819 | 0.681 | 0.0 | |
| 356506341 | 895 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.719 | 0.667 | 0.0 | |
| 357514793 | 791 | Pentatricopeptide repeat-containing prot | 0.983 | 0.805 | 0.668 | 0.0 | |
| 297802780 | 686 | hypothetical protein ARALYDRAFT_491483 [ | 0.979 | 0.925 | 0.600 | 0.0 | |
| 4049345 | 688 | putative protein [Arabidopsis thaliana] | 0.979 | 0.922 | 0.594 | 0.0 | |
| 30689384 | 763 | pentatricopeptide repeat-containing prot | 0.979 | 0.832 | 0.594 | 0.0 | |
| 115473985 | 726 | Os07g0670000 [Oryza sativa Japonica Grou | 0.981 | 0.876 | 0.5 | 1e-179 |
| >gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/647 (70%), Positives = 546/647 (84%), Gaps = 3/647 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
MNMYCK+G FD+AL +F NLNNPDIVSWNTVLSGF++SDDAL+FALRMN GV FDAVT
Sbjct: 120 MNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTC 179
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
+T L+FC DHEGF+FG QLHS I+K GLD EV+VGNALITMYSR RLVEARRVFDEM N
Sbjct: 180 TTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRN 239
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD VSWNA+LSGY Q+G+ G+EAIL +EM+++G++LDHVSFT A SACGH K ELG+Q
Sbjct: 240 KDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQ 299
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IH +++K+GY THV V NVL+STYSKCE DA VF + DRNV+SWTTMIS++ EDA
Sbjct: 300 IHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDAT 359
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
SLF EMR DGV PNDVTF+GLIHAI++ NLV+EG+MIHG+C+KT+FLSE +V N LITMY
Sbjct: 360 SLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMY 419
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FESM DS KVF+EL+ REIISWN+LISGYAQNGL A+Q F + ES+PN +TFGS
Sbjct: 420 AKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGS 479
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VL+++ +AE IS++HGQRCHSHI+K+GL+++PIV SALLDMY KRGSI ES VF+ET
Sbjct: 480 VLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPL 539
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K+E AWTAIISA ARHGDYE+VMN FK+ME +GV+PDSITFL+V+T CGR GM+ G L
Sbjct: 540 KNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQL 599
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+SM+KD+ IEPSP+HYS MVDMLGR GRL+EAEE VGQIPGG GLSVLQSLLGACRIHG
Sbjct: 600 FNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHG 659
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+M +R+AD L++MEP GSGSYVLMSNLYAEKG+WE VA +RKGM+ +GVRKE+GFSW
Sbjct: 660 NVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWV 719
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRER 644
DVGD DG LHGFSS D HP+SEEIYRMAE LG EMK+L +R+R
Sbjct: 720 DVGDADGSLYLHGFSSDDKFHPQSEEIYRMAETLGLEMKFLEKERKR 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa] gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/651 (69%), Positives = 533/651 (81%), Gaps = 8/651 (1%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
MNMYCKSGQF KALCIF NL +PDIVSWNTVLSG + S+DA SFA +MN GVVFDAVTY
Sbjct: 106 MNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGCQTSEDAFSFACKMNSSGVVFDAVTY 165
Query: 61 STALSFCLDH--EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118
+T LSFC H FL GLQLHS IVKFG D EV+VGNALI+MYSRWG LVEARRVF+EM
Sbjct: 166 TTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEM 225
Query: 119 PNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178
+D VSWNA++SGY+Q+G YG+EAI ++M R G+ LD +SFTSA SACG+EKNLEL
Sbjct: 226 KTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELA 285
Query: 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNRED 238
+QIHG+SIK + HV+V NVL+STY KC+V DA VF+ M++RNV+SWTTMIS++ +
Sbjct: 286 RQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDEAE 345
Query: 239 AVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298
AVS F EMRLDGV PNDVTF+GLIHAI+IG LV +G+M+HG C KT F S+ +VCN +IT
Sbjct: 346 AVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCNSIIT 405
Query: 299 MYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF 358
MYA+F+SMQDS KVF EL ++II+WNALISG+ NGL A++AFF + ESKPN Y+F
Sbjct: 406 MYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIESKPNQYSF 465
Query: 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418
GS+LNA+GAAED+SLK+GQRCHS IIK+GL++DPIV SALLDMY KRGSI ESQ+VF ET
Sbjct: 466 GSILNAIGAAEDVSLKYGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSICESQKVFVET 525
Query: 419 QEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478
++S+FAWT IISA ARHGDYESVMN F+EM VRPDSITFLS+LT CGR GM+ G
Sbjct: 526 PQQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRRGMVDMGC 585
Query: 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538
HLF SM+KDY IEPS +HYSC+VDMLGR GRLEEAE L+ IPGGPGLSVLQSLLGACR+
Sbjct: 586 HLFGSMVKDYQIEPSAEHYSCLVDMLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRV 645
Query: 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598
HGNV+MGER+ADALM+MEP SGSYVLMSNLYAE G WEMVA +RK M+ KGV+KEVGFS
Sbjct: 646 HGNVDMGERVADALMEMEPTESGSYVLMSNLYAEIGKWEMVAKVRKRMRVKGVKKEVGFS 705
Query: 599 WADVGDID---GLHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRERAI 646
W DVG ID LHGFSSGD +HP+SE I RMAECLG EMK+L RE I
Sbjct: 706 WVDVGGIDSSLSLHGFSSGDTSHPQSEAICRMAECLGFEMKFL---REEEI 753
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/648 (66%), Positives = 531/648 (81%), Gaps = 5/648 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
MNMYCKSGQ ++A +F NL++PDIVSWNT+LSGFEKS++ALSFALRMNL GV FD+VTY
Sbjct: 115 MNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEKSENALSFALRMNLNGVKFDSVTY 174
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
+TALSFCLD E FLFG QLH+L +K G +V+VGNAL+TMYSRW LV+AR+VFDEMP+
Sbjct: 175 TTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPS 234
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
+D VSW+A+++GY Q+GD G++AIL ++M+R+G++ D+V T A S CGHE+NLELGKQ
Sbjct: 235 RDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQ 294
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IH +++K G+ TH SVGNVL+STYSKCE+ DA VF ++DRNVISWTTMIS+ E AV
Sbjct: 295 IHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYEEGAV 354
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
SLF +MRLDGV PNDVTFIGL+HAI+I N+V++G M+HGLCIK +F+SE +V N LITMY
Sbjct: 355 SLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMY 414
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE MQD+ +VF EL REIISWNALISGYAQN L A++AF I E KPN YTFGS
Sbjct: 415 AKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIMEYKPNEYTFGS 474
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ A EDISLKHGQRCHSH+IKVGL+ DPI+ ALLDMY KRGSI ESQRVFNET +
Sbjct: 475 VLNAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSK 534
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
+S+FAWTA+IS A+HGDYESV+ F+EME + ++PD++ FLSVLT C RN M+ GR
Sbjct: 535 QSQFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQF 594
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+ M+KD+ IEP +HYSCMVDMLGR GRLEEAEE++ +IPGGPG+S LQSLLGACR HG
Sbjct: 595 FNMMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHG 654
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NVEM ERIA+ LMK EP SG YVLMSNLYA+KGDWE VA +RK M+ +GV KE+GFSW
Sbjct: 655 NVEMAERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWV 714
Query: 601 DVGDIDG----LHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRER 644
DVG+ LHGFSSGD +HP+SEEI+RMA+ +G+EMK+L RER
Sbjct: 715 DVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYMGAEMKFLKD-RER 761
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/649 (68%), Positives = 527/649 (81%), Gaps = 26/649 (4%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
MNMYCK+G FD+AL +F NLNNPDIVSWNTVLSGF++SDDAL+FALRMN GV FDAVT
Sbjct: 120 MNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTC 179
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
+T L+FC DHEGF+FG QLHS I+K GLD EV+VGNALITMYSR RLVEARR
Sbjct: 180 TTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARR------- 232
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
G+ G+EAIL +EM+++G++LDHVSFT A SACGH K ELG+Q
Sbjct: 233 ----------------GNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQ 276
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IH +++K+GY THV V NVL+STYSKCE DA VF + DRNV+SWTTMIS++ EDA
Sbjct: 277 IHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDAT 336
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
SLF EMR DGV PNDVTF+GLIHAI++ NLV+EG+MIHG+C+KT+FLSE +V N LITMY
Sbjct: 337 SLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMY 396
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FESM DS KVF+EL+ REIISWN+LISGYAQNGL A+Q F + ES+PN +TFGS
Sbjct: 397 AKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGS 456
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VL+++ +AE IS++HGQRCHSHI+K+GL+++PIV SALLDMY KRGSI ES VF+ET
Sbjct: 457 VLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPL 516
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K+E AWTAIISA ARHGDYE+VMN FK+ME +GV+PDSITFL+V+T CGR GM+ G L
Sbjct: 517 KNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQL 576
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+SM+KD+ IEPSP+HYS MVDMLGR GRL+EAEE VGQIPGG GLSVLQSLLGACRIHG
Sbjct: 577 FNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHG 636
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+M +R+AD L++MEP GSGSYVLMSNLYAEKG+WE VA +RKGM+ +GVRKE+GFSW
Sbjct: 637 NVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWV 696
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRERAI 646
DVGD DG LHGFSS D HP+SEEIYRMAE LG EMK+L +R+R I
Sbjct: 697 DVGDADGSLYLHGFSSDDKFHPQSEEIYRMAETLGLEMKFLEKERKRKI 745
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/647 (66%), Positives = 523/647 (80%), Gaps = 3/647 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MYCKSG F KAL +F NL++PDIVSWNTVLSGFE+S DAL+FA M+ G+ FD VTY
Sbjct: 119 MKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFEESVDALNFARSMHYCGIAFDPVTY 178
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
++AL+FC GFLFG QLHSL+VK GL EV++GNAL+TMYSRWG L EARRVFDEMP
Sbjct: 179 TSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPE 238
Query: 121 KDSVSWNAILSGYTQDGD-YGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGK 179
+D VSWNA++SGY Q+G YG+EA+L + M+R G+ +DHVS T A SACGH KNLELG+
Sbjct: 239 RDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGR 298
Query: 180 QIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDA 239
QIHG++ K+GYGTHVSV NVLMSTYSKCEV DA VF + +RNV+SWTTMIS++ EDA
Sbjct: 299 QIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISIDEEDA 358
Query: 240 VSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITM 299
VSLF MR++GV PNDVTFIGLIHA++I NLV EG IHGLCIK+ FLSE +V N ITM
Sbjct: 359 VSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITM 418
Query: 300 YARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFG 359
YA+FE +Q+S K+F+EL+CRE +SWNALISGYAQNG A+ + +KE KPN YTFG
Sbjct: 419 YAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVKEIKPNQYTFG 478
Query: 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ 419
SVLNA+ AAEDISL HG+ CHSH++K+GL +DPIV ALLDMYGKRG I ESQRVFNET
Sbjct: 479 SVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETL 538
Query: 420 EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRH 479
E+++FAWTAIISA ARHGD+ESVM+ + EME +G+ PDSITFLSVL C R GM+ G
Sbjct: 539 ERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHR 598
Query: 480 LFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIH 539
+FDSM+K + IEP+ +HYS MVDMLGRVGRL+EAEEL+ QIPGGPGLSVLQSLLG+CR+H
Sbjct: 599 VFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLH 658
Query: 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSW 599
GN+EM E++ L++M+PA SG YVLM+NLYAEKG WE VA +R+GM+ +GV+KEVGFSW
Sbjct: 659 GNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSW 718
Query: 600 ADVGDIDG--LHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRER 644
DV ++D LHGFSSGD +HP SE I ++AE LG +MK L RER
Sbjct: 719 VDVSNVDSLYLHGFSSGDKSHPESENICKIAEFLGLQMKILKENRER 765
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/645 (66%), Positives = 525/645 (81%), Gaps = 8/645 (1%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MYCK+G+F+ ALC+F L+ PDIVSWNT+LSGFEKS DAL+FA M+L GVVFD VTY
Sbjct: 126 MKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFEKSVDALNFACFMHLNGVVFDPVTY 185
Query: 61 STALSFCLDHE-----GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVF 115
+TALSFC D + GFLFGLQLHSL+VK G EV++GNAL+TMYSRWG L EA RVF
Sbjct: 186 TTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVF 245
Query: 116 DEMPNKDSVSWNAILSGYTQDGD-YGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKN 174
+EM +D VSWNA+LSGY Q+G+ YG+EA+L M+R+G+ LDHVS T A SACG+ KN
Sbjct: 246 NEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKN 305
Query: 175 LELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISM 234
LE GKQIHG++ K+GYGTHV+V NVL+STYSKC+V DA VF+ M RNV+SWTT+IS+
Sbjct: 306 LEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLISI 365
Query: 235 NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCN 294
+ E+ VSLF MR+DGV PNDVTFIGL+HAI+I N+VKEG M+HGLC+K+ SE +V N
Sbjct: 366 DEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSN 425
Query: 295 CLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPN 354
LITMYA+FES+Q+S+K+F+EL+ + ISWNALISGYAQNGL A F IKE KPN
Sbjct: 426 SLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKPN 485
Query: 355 AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV 414
YTFGSVLNA+ AAEDISLKHGQRCHSH+IK+GL++DP V ALLDMYGKRG+I ESQRV
Sbjct: 486 QYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRV 545
Query: 415 FNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMI 474
FNET EK++F+WT +ISA ARHGDYESVM+ +KE+E +G DSITFLSVL C R GM+
Sbjct: 546 FNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMV 605
Query: 475 HKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLG 534
G +FDSM+K + IEP+P+HYS MVDMLGRVGRL+EAEEL+ QIPGGPGLSVLQSLLG
Sbjct: 606 DVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLG 665
Query: 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKE 594
+C++HGNVEM ER+ D+L++M+P SG YVLM+NLYAEKG+WE VA +RKGM+ +GV+KE
Sbjct: 666 SCKLHGNVEMAERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKE 725
Query: 595 VGFSWADVGDIDG--LHGFSSGDNTHPRSEEIYRMAECLGSEMKY 637
VGFSW DV ++D LHGFSSGD +HP SE I RMAE LG +M +
Sbjct: 726 VGFSWVDVANVDSLHLHGFSSGDKSHPESETIDRMAEFLGLQMIF 770
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp. lyrata] gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/638 (60%), Positives = 494/638 (77%), Gaps = 3/638 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MY K+G+FD AL IF NL +PD+VSWNT+LSGF+ + AL+F +RM GVVFDA TY
Sbjct: 43 MGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTY 102
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
STALSFC+ EGF GLQL S +VK GL+S++ VGN+ ITMYSR G ARRVFDEMP
Sbjct: 103 STALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPF 162
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD +SWN++LSG +Q+G +G EA+L +MMR+G+ LDHVSFTS + C HE +L+L +Q
Sbjct: 163 KDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQ 222
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IHG+ IK GY + + VGN+LMS YSKC V VF +M +RNV+SWTTMIS NR+DAV
Sbjct: 223 IHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISSNRDDAV 282
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
S+F MRLDGV PN+VTF+GL++A+ +KEG IHGLCIKT F+SEPSV N ITMY
Sbjct: 283 SIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMY 342
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE+++D++K FD+++ REIISWNA+ISG+AQNG S A++ F E+ PN YTFGS
Sbjct: 343 AKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETMPNEYTFGS 402
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ AEDIS+KHGQRCH+H++K+GL+S P+V SALLDMY KRG+I ES++VFNE +
Sbjct: 403 VLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQ 462
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
+++F WT+IISA + HGD+ SVMN F EM + V PD +TFLSVLT C R GM+ KG +
Sbjct: 463 RNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEI 522
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
+ M++DY++EPS +HYSCMVDMLGR GRL+EAEEL+ ++PGGPG S+LQS+LG+CR+HG
Sbjct: 523 LNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 582
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+MG ++A+ M+M+P SGSYV M N+YAEK W+ A +RK M+ K V KE GFSW
Sbjct: 583 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWI 642
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEM 635
DVGD +G + GFSSGD +HP+S+EIYRM E +G EM
Sbjct: 643 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIVGLEM 680
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana] gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/638 (59%), Positives = 495/638 (77%), Gaps = 3/638 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MY K+G+FD ALCIF NL +PD+VSWNT+LSGF+ + AL+F +RM GVVFDA TY
Sbjct: 43 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTY 102
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
STALSFC+ EGFL GLQL S +VK GL+S++ VGN+ ITMYSR G ARRVFDEM
Sbjct: 103 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSF 162
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD +SWN++LSG +Q+G +G EA++ +MMR+G+ LDHVSFTS + C HE +L+L +Q
Sbjct: 163 KDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQ 222
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IHG+ IK GY + + VGN+LMS YSKC V VF +M +RNV+SWTTMIS N++DAV
Sbjct: 223 IHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 282
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
S+F MR DGV PN+VTF+GLI+A+ +KEG IHGLCIKT F+SEPSV N IT+Y
Sbjct: 283 SIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLY 342
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE+++D++K F++++ REIISWNA+ISG+AQNG S A++ F E+ PN YTFGS
Sbjct: 343 AKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGS 402
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ AEDIS+K GQRCH+H++K+GL+S P+V SALLDMY KRG+I ES++VFNE +
Sbjct: 403 VLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQ 462
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K++F WT+IISA + HGD+E+VMN F +M + V PD +TFLSVLT C R GM+ KG +
Sbjct: 463 KNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEI 522
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+ M++ Y++EPS +HYSCMVDMLGR GRL+EAEEL+ ++PGGPG S+LQS+LG+CR+HG
Sbjct: 523 FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 582
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+MG ++A+ M+M+P SGSYV M N+YAEK +W+ A +RK M+ K V KE GFSW
Sbjct: 583 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWI 642
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEM 635
DVGD +G + GFSSGD +HP+S+EIYRM E +G EM
Sbjct: 643 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEM 680
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g32430, mitochondrial; Flags: Precursor gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana] gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana] gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/638 (59%), Positives = 495/638 (77%), Gaps = 3/638 (0%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MY K+G+FD ALCIF NL +PD+VSWNT+LSGF+ + AL+F +RM GVVFDA TY
Sbjct: 118 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTY 177
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
STALSFC+ EGFL GLQL S +VK GL+S++ VGN+ ITMYSR G ARRVFDEM
Sbjct: 178 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSF 237
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD +SWN++LSG +Q+G +G EA++ +MMR+G+ LDHVSFTS + C HE +L+L +Q
Sbjct: 238 KDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQ 297
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IHG+ IK GY + + VGN+LMS YSKC V VF +M +RNV+SWTTMIS N++DAV
Sbjct: 298 IHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 357
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
S+F MR DGV PN+VTF+GLI+A+ +KEG IHGLCIKT F+SEPSV N IT+Y
Sbjct: 358 SIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLY 417
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE+++D++K F++++ REIISWNA+ISG+AQNG S A++ F E+ PN YTFGS
Sbjct: 418 AKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGS 477
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ AEDIS+K GQRCH+H++K+GL+S P+V SALLDMY KRG+I ES++VFNE +
Sbjct: 478 VLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQ 537
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K++F WT+IISA + HGD+E+VMN F +M + V PD +TFLSVLT C R GM+ KG +
Sbjct: 538 KNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEI 597
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+ M++ Y++EPS +HYSCMVDMLGR GRL+EAEEL+ ++PGGPG S+LQS+LG+CR+HG
Sbjct: 598 FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 657
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+MG ++A+ M+M+P SGSYV M N+YAEK +W+ A +RK M+ K V KE GFSW
Sbjct: 658 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWI 717
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEM 635
DVGD +G + GFSSGD +HP+S+EIYRM E +G EM
Sbjct: 718 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEM 755
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group] gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group] gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group] gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group] gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 321/642 (50%), Positives = 428/642 (66%), Gaps = 6/642 (0%)
Query: 4 YCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVF-DAVTYST 62
Y K+G F A+ +F D+ S+NT+LS F +AL FA M G V DAVT +
Sbjct: 77 YAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDPAEALDFASWMLRSGAVRPDAVTCTV 136
Query: 63 ALSFCLDH-EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK 121
ALS EGFL QLH+L + GL ++V+VGNAL+T YSR G L EAR VFD+MP +
Sbjct: 137 ALSLAAGRGEGFLV-RQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPAR 195
Query: 122 DSVSWNAILSGYTQDGDYGVEAILALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQ 180
D VSWNA++ G QDGD E I + M+R G ++ D +S S ACG E LELG+Q
Sbjct: 196 DLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQ 255
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
+HG ++K+G +VS+GNVL++ Y KC G A ++F M +R+V+SWTT ISM+ EDA+
Sbjct: 256 VHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMDGEDAL 315
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
+LF MR DGV PN+VTF+ L+ A+ + +M+H C+K E + N LITMY
Sbjct: 316 TLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMY 375
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+ M D+ VFD + REII+WNA+ISGYAQNG A++ F + + PN TF S
Sbjct: 376 AKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARCLTPNETTFAS 435
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VL+AV A E +S+ +GQ HS + +G V AL+DMY KRG++ ES++ F+ET++
Sbjct: 436 VLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQ 495
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
+S AWTAIISA ARHG Y +VM+ F +M GV PD + L+VLT C GM+ GR +
Sbjct: 496 RSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDI 555
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
FDSM D +E P+HYSC+VDMLGR GRL EAEEL+ ++P GP +S LQSLLGACRIHG
Sbjct: 556 FDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRIHG 615
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
+ E+GERIA L + EP SG+YVL+SN+YA+ GDW+ VA +R+ M+ +GV+KE+GFSW
Sbjct: 616 DAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVAKVRRKMRDRGVKKEIGFSWV 675
Query: 601 DVGDIDG--LHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNS 640
D G + LH FSS D THPR+EEIY +A+ LG EMK+L +
Sbjct: 676 DAGAGEALHLHKFSSDDTTHPRTEEIYAVADVLGWEMKFLKN 717
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | ||||||
| TAIR|locus:2127801 | 763 | AT4G32430 "AT4G32430" [Arabido | 0.979 | 0.832 | 0.594 | 8.7e-214 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.986 | 0.736 | 0.349 | 4.8e-110 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.972 | 0.612 | 0.350 | 4e-104 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.970 | 0.777 | 0.335 | 9.8e-103 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.952 | 0.658 | 0.351 | 3.3e-102 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.959 | 0.755 | 0.354 | 6.9e-102 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.973 | 0.634 | 0.328 | 9.4e-98 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.964 | 0.789 | 0.341 | 6.6e-97 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.962 | 0.728 | 0.346 | 1.4e-96 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.964 | 0.749 | 0.329 | 1.4e-96 |
| TAIR|locus:2127801 AT4G32430 "AT4G32430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2066 (732.3 bits), Expect = 8.7e-214, P = 8.7e-214
Identities = 379/638 (59%), Positives = 495/638 (77%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAVTY 60
M MY K+G+FD ALCIF NL +PD+VSWNT+LSGF+ + AL+F +RM GVVFDA TY
Sbjct: 118 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVRMKSAGVVFDAFTY 177
Query: 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN 120
STALSFC+ EGFL GLQL S +VK GL+S++ VGN+ ITMYSR G ARRVFDEM
Sbjct: 178 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSF 237
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180
KD +SWN++LSG +Q+G +G EA++ +MMR+G+ LDHVSFTS + C HE +L+L +Q
Sbjct: 238 KDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQ 297
Query: 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAV 240
IHG+ IK GY + + VGN+LMS YSKC V VF +M +RNV+SWTTMIS N++DAV
Sbjct: 298 IHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAV 357
Query: 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMY 300
S+F MR DGV PN+VTF+GLI+A+ +KEG IHGLCIKT F+SEPSV N IT+Y
Sbjct: 358 SIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLY 417
Query: 301 ARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360
A+FE+++D++K F++++ REIISWNA+ISG+AQNG S A++ F E+ PN YTFGS
Sbjct: 418 AKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGS 477
Query: 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE 420
VLNA+ AEDIS+K GQRCH+H++K+GL+S P+V SALLDMY KRG+I ES++VFNE +
Sbjct: 478 VLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQ 537
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480
K++F WT+IISA + HGD+E+VMN F +M + V PD +TFLSVLT C R GM+ KG +
Sbjct: 538 KNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEI 597
Query: 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540
F+ M++ Y++EPS +HYSCMVDMLGR GRL+EAEEL+ ++PGGPG S+LQS+LG+CR+HG
Sbjct: 598 FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHG 657
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600
NV+MG ++A+ M+M+P SGSYV M N+YAEK +W+ A +RK M+ K V KE GFSW
Sbjct: 658 NVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWI 717
Query: 601 DVGDIDG---LHGFSSGDNTHPRSEEIYRMAECLGSEM 635
DVGD +G + GFSSGD +HP+S+EIYRM E +G EM
Sbjct: 718 DVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEM 755
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 230/659 (34%), Positives = 382/659 (57%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALSFALRMNLIGVVFDA 57
++ Y K F +F+ + ++V+W T++SG+ ++ D+ L+ +RM G ++
Sbjct: 135 VDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNS 194
Query: 58 VTYSTALSFCLDHEGFLF-GLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFD 116
T++ AL L EG GLQ+H+++VK GLD + V N+LI +Y + G + +AR +FD
Sbjct: 195 FTFAAALGV-LAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFD 253
Query: 117 EMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLE 176
+ K V+WN+++SGY +G +EA+ M +RL SF S C + K L
Sbjct: 254 KTEVKSVVTWNSMISGYAANG-LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELR 312
Query: 177 LGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD-RNVISWTTMIS-- 233
+Q+H +K G+ ++ LM YSKC DA ++F+ + NV+SWT MIS
Sbjct: 313 FTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372
Query: 234 -MN--REDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP 290
N +E+AV LF EM+ GV PN+ T+ ++ A+ + + +H +KTN+
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV---ISPSE-VHAQVVKTNYERSS 428
Query: 291 SVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKE 350
+V L+ Y + ++++ KVF + ++I++W+A+++GYAQ G + AA++ F + K
Sbjct: 429 TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG 488
Query: 351 S-KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409
KPN +TF S+LN V AA + S+ G++ H IK LDS V SALL MY K+G+I
Sbjct: 489 GIKPNEFTFSSILN-VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIE 547
Query: 410 ESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG 469
++ VF +EK +W ++IS A+HG ++ FKEM+ + V+ D +TF+ V C
Sbjct: 548 SAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACT 607
Query: 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVL 529
G++ +G FD M++D I P+ +H SCMVD+ R G+LE+A +++ +P G ++
Sbjct: 608 HAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIW 667
Query: 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589
+++L ACR+H E+G A+ ++ M+P S +YVL+SN+YAE GDW+ A +RK M +
Sbjct: 668 RTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNER 727
Query: 590 GVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRERAIAL 648
V+KE G+SW +V + + F +GD +HP ++IY E L + +K L + + + L
Sbjct: 728 NVKKEPGYSWIEVKN--KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVL 784
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 227/648 (35%), Positives = 345/648 (53%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFE---KSDDALSFALRMNLIGVVFDA 57
++MY K + + A +F L + V WN ++ G+ +S + + M G D
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDD 428
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
T+++ LS C G Q HS+I+K L ++VGNAL+ MY++ G L +AR++F+
Sbjct: 429 FTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFER 488
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
M ++D+V+WN I+ Y QD + EA M G+ D S AC H L
Sbjct: 489 MCDRDNVTWNTIIGSYVQDENES-EAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQ 547
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---- 233
GKQ+H +S+K G + G+ L+ YSKC + DA KVF + + +V+S +I+
Sbjct: 548 GKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ 607
Query: 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVC 293
N E+AV LF+EM GV P+++TF ++ A + G HG K F SE
Sbjct: 608 NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYL 667
Query: 294 NC-LITMYARFESMQDSEKVFDELSC-REIISWNALISGYAQNGLSLAAVQAFFGVIKES 351
L+ MY M ++ +F ELS + I+ W ++SG++QNG A++ F+ ++
Sbjct: 668 GISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALK-FYKEMRHD 726
Query: 352 K--PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409
P+ TF +VL SL+ G+ HS I + D D + + L+DMY K G +
Sbjct: 727 GVLPDQATFVTVLRVCSVLS--SLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784
Query: 410 ESQRVFNETQEKSEF-AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468
S +VF+E + +S +W ++I+ A++G E + F M + PD ITFL VLT C
Sbjct: 785 GSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTAC 844
Query: 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSV 528
G + GR +F+ M+ Y IE DH +CMVD+LGR G L+EA++ + P +
Sbjct: 845 SHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARL 904
Query: 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588
SLLGACRIHG+ GE A+ L+++EP S +YVL+SN+YA +G WE LRK M+
Sbjct: 905 WSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRD 964
Query: 589 KGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+GV+K G+SW DV H F++GD +H +I E L MK
Sbjct: 965 RGVKKVPGYSWIDVEQ--RTHIFAAGDKSHSEIGKIEMFLEDLYDLMK 1010
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 217/647 (33%), Positives = 370/647 (57%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDD---ALSFALRMNLIGVVFDA 57
++++C+ G D+A +F +++ V ++T+L GF K D AL F +RM V
Sbjct: 76 VSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVV 135
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
++ L C D G ++H L+VK G +++ L MY++ ++ EAR+VFD
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR 195
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
MP +D VSWN I++GY+Q+G + A+ + M + L+ ++ S A + + +
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARM-ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISM--- 234
GK+IHG +++ G+ + V++ L+ Y+KC A ++F M +RNV+SW +MI
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 235 --NREDAVSLFKEMRLDGVCPNDVTFIGLIHAIS-IGNLVKEGRMIHGLCIKTNFLSEPS 291
N ++A+ +F++M +GV P DV+ +G +HA + +G+L + GR IH L ++ S
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL-ERGRFIHKLSVELGLDRNVS 373
Query: 292 VCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKES 351
V N LI+MY + + + + +F +L R ++SWNA+I G+AQNG + A+ F + +
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 352 -KPNAYTFGSVLNAVGAAEDISLKHGQR-CHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409
KP+ +T+ SV+ A+ ++S+ H + H +++ LD + V +AL+DMY K G+I
Sbjct: 434 VKPDTFTYVSVITAIA---ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIM 490
Query: 410 ESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG 469
++ +F+ E+ W A+I HG ++ + F+EM+ ++P+ +TFLSV++ C
Sbjct: 491 IARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Query: 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVL 529
+G++ G F M ++Y IE S DHY MVD+LGR GRL EA + + Q+P P ++V
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589
++LGAC+IH NV E+ A+ L ++ P G +VL++N+Y WE V +R M +
Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670
Query: 590 GVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
G+RK G S ++ + +H F SG HP S++IY E L +K
Sbjct: 671 GLRKTPGCSMVEIKN--EVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 227/646 (35%), Positives = 365/646 (56%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDAL-SFALRMNLIGVVFDAV- 58
++M G D A IF+ ++ D +SWN++ + + ++ SF + +L+ D V
Sbjct: 202 ISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRI-FSLMRRFHDEVN 260
Query: 59 --TYSTALSFC--LDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRV 114
T ST LS +DH+ + G +H L+VK G DS V V N L+ MY+ GR VEA V
Sbjct: 261 STTVSTLLSVLGHVDHQKW--GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLV 318
Query: 115 FDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKN 174
F +MP KD +SWN++++ + DG ++A+ L M+ G +++V+FTSA +AC
Sbjct: 319 FKQMPTKDLISWNSLMASFVNDGR-SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377
Query: 175 LELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISM 234
E G+ +HG+ + G + +GN L+S Y K ++ +V +M R+V++W +I
Sbjct: 378 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 437
Query: 235 NRED-----AVSLFKEMRLDGVCPNDVTFIGLIHAISI-GNLVKEGRMIHGLCIKTNFLS 288
ED A++ F+ MR++GV N +T + ++ A + G+L++ G+ +H + F S
Sbjct: 438 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 497
Query: 289 EPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNG-----LSLAAVQA 343
+ V N LITMYA+ + S+ +F+ L R II+WNA+++ A +G L L +
Sbjct: 498 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 557
Query: 344 FFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG 403
FGV + ++F L+A AA+ L+ GQ+ H +K+G + D + +A DMY
Sbjct: 558 SFGVSLDQ----FSFSEGLSA--AAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYS 611
Query: 404 KRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLS 463
K G I E ++ + +S +W +ISAL RHG +E V F EM G++P +TF+S
Sbjct: 612 KCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVS 671
Query: 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG 523
+LT C G++ KG +D + +D+ +EP+ +H C++D+LGR GRL EAE + ++P
Sbjct: 672 LLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMK 731
Query: 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583
P V +SLL +C+IHGN++ G + A+ L K+EP YVL SN++A G WE V +R
Sbjct: 732 PNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVR 791
Query: 584 KGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAE 629
K M K ++K+ SW + D + F GD THP++ EIY E
Sbjct: 792 KQMGFKNIKKKQACSWVKLKD--KVSSFGIGDRTHPQTMEIYAKLE 835
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 232/654 (35%), Positives = 374/654 (57%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALS----FALRMNLIGVVFD 56
+N+YC G A F+++ N D+ +WN ++SG+ ++ ++ F+L M G+ D
Sbjct: 93 VNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPD 152
Query: 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFD 116
T+ + L C + G ++H L +KFG +VYV +LI +YSR+ + AR +FD
Sbjct: 153 YRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFD 209
Query: 117 EMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLR-LDHVSFTSAASACGHEKNL 175
EMP +D SWNA++SGY Q G+ EA+ + GLR +D V+ S SAC +
Sbjct: 210 EMPVRDMGSWNAMISGYCQSGN-AKEALT-----LSNGLRAMDSVTVVSLLSACTEAGDF 263
Query: 176 ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-- 233
G IH SIK G + + V N L+ Y++ D KVF RM+ R++ISW ++I
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAY 323
Query: 234 -MNRED--AVSLFKEMRLDGVCPNDVTFIGLIHAIS-IGNLVKEGRMIHGLCIKTN-FLS 288
+N + A+SLF+EMRL + P+ +T I L +S +G+ ++ R + G ++ FL
Sbjct: 324 ELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD-IRACRSVQGFTLRKGWFLE 382
Query: 289 EPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVI 348
+ ++ N ++ MYA+ + + VF+ L ++ISWN +ISGYAQNG + A++ + ++
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIE-MYNIM 441
Query: 349 KES---KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405
+E N T+ SVL A A +L+ G + H ++K GL D V ++L DMYGK
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAG--ALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 406 GSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVL 465
G + ++ +F + + W +I+ HG E + FKEM ++GV+PD ITF+++L
Sbjct: 500 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 559
Query: 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPG 525
+ C +G++ +G+ F+ M DY I PS HY CMVDM GR G+LE A + + + P
Sbjct: 560 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 619
Query: 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585
S+ +LL ACR+HGNV++G+ ++ L ++EP G +VL+SN+YA G WE V +R
Sbjct: 620 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 679
Query: 586 MKSKGVRKEVGFSWADVGDIDG-LHGFSSGDNTHPRSEEIYRMAECLGSEMKYL 638
KG+RK G W+ + ++D + F +G+ THP EE+YR L +++K +
Sbjct: 680 AHGKGLRKTPG--WSSM-EVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 215/655 (32%), Positives = 372/655 (56%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALSFALRMN-LIGVVFD 56
++ + KSG A +FN + + V+ N ++ G + ++A + MN +I V +
Sbjct: 250 VSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE 309
Query: 57 A--VTYSTALSFCLDHE-GFLFGLQLHSLIVKFGL-DSEVYVGNALITMYSRWGRLVEAR 112
+ + S+ + L E G G ++H ++ GL D V +GN L+ MY++ G + +AR
Sbjct: 310 SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADAR 369
Query: 113 RVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHE 172
RVF M +KDSVSWN++++G Q+G + +EA+ M R + + S+ S+C
Sbjct: 370 RVFYFMTDKDSVSWNSMITGLDQNGCF-IEAVERYKSMRRHDILPGSFTLISSLSSCASL 428
Query: 173 KNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMI 232
K +LG+QIHG S+K+G +VSV N LM+ Y++ + K+F M + + +SW ++I
Sbjct: 429 KWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII 488
Query: 233 -SMNRED-----AVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNF 286
++ R + AV F + G N +TF ++ A+S + + G+ IHGL +K N
Sbjct: 489 GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNI 548
Query: 287 LSEPSVCNCLITMYARFESMQDSEKVFDELS-CREIISWNALISGYAQNGLSLAAVQAFF 345
E + N LI Y + M EK+F ++ R+ ++WN++ISGY N L A+ +
Sbjct: 549 ADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVW 608
Query: 346 GVIKESKP-NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404
+++ + +++ + +VL+A + +L+ G H+ ++ L+SD +VGSAL+DMY K
Sbjct: 609 FMLQTGQRLDSFMYATVLSAFASVA--TLERGMEVHACSVRACLESDVVVGSALVDMYSK 666
Query: 405 RGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKG-VRPDSITFLS 463
G + + R FN ++ ++W ++IS ARHG E + F+ M+ G PD +TF+
Sbjct: 667 CGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVG 726
Query: 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG 523
VL+ C G++ +G F+SM Y + P +H+SCM D+LGR G L++ E+ + ++P
Sbjct: 727 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMK 786
Query: 524 PGLSVLQSLLGAC-RIHGN-VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581
P + + +++LGAC R +G E+G++ A+ L ++EP + +YVL+ N+YA G WE +
Sbjct: 787 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVK 846
Query: 582 LRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
RK MK V+KE G+SW + D G+H F +GD +HP ++ IY+ + L +M+
Sbjct: 847 ARKKMKDADVKKEAGYSWVTMKD--GVHMFVAGDKSHPDADVIYKKLKELNRKMR 899
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 220/644 (34%), Positives = 356/644 (55%)
Query: 16 IFNNLNNPDIVSWNTVLSGF---EKSDDALS-FALRMNLIGVVFDAVTYSTALSFCLDHE 71
IF ++ PD+ +N ++ GF E +LS FA + ++ TY+ A+S
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFR 133
Query: 72 GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131
G +H V G DSE+ +G+ ++ MY ++ R+ +AR+VFD MP KD++ WN ++S
Sbjct: 134 DDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193
Query: 132 GYTQDGDYGVEAILALIEMMRKGL-RLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGY 190
GY ++ Y VE+I +++ + RLD + A + L LG QIH ++ K G
Sbjct: 194 GYRKNEMY-VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC 252
Query: 191 GTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMI---SMNRED--AVSLFKE 245
+H V +S YSKC + +FR +++++ MI + N E ++SLFKE
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312
Query: 246 MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFES 305
+ L G T + L+ +S G+L+ IHG C+K+NFLS SV L T+Y++
Sbjct: 313 LMLSGARLRSSTLVSLV-PVS-GHLMLI-YAIHGYCLKSNFLSHASVSTALTTVYSKLNE 369
Query: 306 MQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNA 364
++ + K+FDE + + SWNA+ISGY QNGL+ A+ F + K E PN T +L+A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEF 424
+SL G+ H + +S V +AL+ MY K GSI E++R+F+ +K+E
Sbjct: 430 CAQLGALSL--GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV 487
Query: 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484
W +IS HG + +N F EM N G+ P +TFL VL C G++ +G +F+SM
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547
Query: 485 LKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEM 544
+ Y EPS HY+CMVD+LGR G L+ A + + + PG SV ++LLGACRIH + +
Sbjct: 548 IHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNL 607
Query: 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGD 604
+++ L +++P G +VL+SN+++ ++ A +R+ K + + K G++ ++G+
Sbjct: 608 ARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGE 667
Query: 605 IDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYLNSKRERAIAL 648
H F+SGD +HP+ +EIY E L +M+ + E +AL
Sbjct: 668 TP--HVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL 709
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 224/647 (34%), Positives = 354/647 (54%)
Query: 4 YCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALS-FA-LRMNLIGVVFDAV 58
Y + G+ D +F+ + D V WN +L+G+ K D + F+ +RM+ I +AV
Sbjct: 183 YLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISP--NAV 240
Query: 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118
T+ LS C G+QLH L+V G+D E + N+L++MYS+ GR +A ++F M
Sbjct: 241 TFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMM 300
Query: 119 PNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178
D+V+WN ++SGY Q G E++ EM+ G+ D ++F+S + +NLE
Sbjct: 301 SRADTVTWNCMISGYVQSG-LMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS--MNR 236
KQIH ++ + + + L+ Y KC A +F + + +V+ +T MIS ++
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419
Query: 237 E---DAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVC 293
D++ +F+ + + PN++T + ++ I I +K GR +HG IK F + ++
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIG 479
Query: 294 NCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAF--FGVIKES 351
+I MYA+ M + ++F+ LS R+I+SWN++I+ AQ+ AA+ F GV
Sbjct: 480 CAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGV---- 535
Query: 352 KPNAYTFGSVLNAVGAAEDI-SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410
Y S+ A+ A ++ S G+ H +IK L SD S L+DMY K G++
Sbjct: 536 SGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKA 595
Query: 411 SQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEM-ENKGVRPDSITFLSVLTVCG 469
+ VF +EK+ +W +II+A HG + + F EM E G+RPD ITFL +++ C
Sbjct: 596 AMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCC 655
Query: 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVL 529
G + +G F SM +DY I+P +HY+C+VD+ GR GRL EA E V +P P V
Sbjct: 656 HVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVW 715
Query: 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589
+LLGACR+H NVE+ E + LM ++P+ SG YVL+SN +A +WE V +R MK +
Sbjct: 716 GTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKER 775
Query: 590 GVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
V+K G+SW ++ H F SGD HP S IY + L E++
Sbjct: 776 EVQKIPGYSWIEINK--RTHLFVSGDVNHPESSHIYSLLNSLLGELR 820
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 212/643 (32%), Positives = 352/643 (54%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDA-LSFALRMNLI--GVVFDA 57
++ Y K G D A +F+ L V+W T++SG K + +S L L+ VV D
Sbjct: 190 IDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDG 249
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
ST LS C G Q+H+ I+++GL+ + + N LI Y + GR++ A ++F+
Sbjct: 250 YILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNG 309
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
MPNK+ +SW +LSGY Q+ + EA+ M + GL+ D + +S ++C L
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHK-EAMELFTSMSKFGLKPDMYACSSILTSCASLHALGF 368
Query: 178 GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNR 236
G Q+H +IK G V N L+ Y+KC+ DA KVF +V+ + MI +R
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428
Query: 237 -------EDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE 289
+A+++F++MR + P+ +TF+ L+ A + + + IHGL K +
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488
Query: 290 PSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGV-I 348
+ LI +Y+ ++DS VFDE+ ++++ WN++ +GY Q + A+ F + +
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL 548
Query: 349 KESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI 408
+P+ +TF +++ A G + L GQ H ++K GL+ +P + +ALLDMY K GS
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQL--GQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 409 FESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468
++ + F+ + W ++IS+ A HG+ + + ++M ++G+ P+ ITF+ VL+ C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSV 528
G++ G F+ ML+ + IEP +HY CMV +LGR GRL +A EL+ ++P P V
Sbjct: 667 SHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725
Query: 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588
+SLL C GNVE+ E A+ + +P SGS+ ++SN+YA KG W +R+ MK
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785
Query: 589 KGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECL 631
+GV KE G SW +G +H F S D +H ++ +IY + + L
Sbjct: 786 EGVVKEPGRSW--IGINKEVHIFLSKDKSHCKANQIYEVLDDL 826
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84MA3 | PP345_ARATH | No assigned EC number | 0.5940 | 0.9799 | 0.8322 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00016878001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (773 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 648 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-144 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-80 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-69 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-42 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 439 bits (1130), Expect = e-144
Identities = 218/645 (33%), Positives = 353/645 (54%), Gaps = 16/645 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKS---DDALSFALRMNLIGVVFDA 57
++M+ + G+ A +F + D+ SWN ++ G+ K+ D+AL RM GV D
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
T+ L C G ++H+ +V+FG + +V V NALITMY + G +V AR VFD
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRK-GLRLDHVSFTSAASACGHEKNLE 176
MP +D +SWNA++SGY ++G+ L L MR+ + D ++ TS SAC +
Sbjct: 248 MPRRDCISWNAMISGYFENGE--CLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 177 LGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNR 236
LG+++HG +K G+ VSV N L+ Y G+A KVF RM ++ +SWT MIS
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 237 -----EDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPS 291
+ A+ + M D V P+++T ++ A + + G +H L + +S
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 292 VCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKES 351
V N LI MY++ + + + +VF + +++ISW ++I+G N A+ F ++
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485
Query: 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES 411
KPN+ T + L+A +L G+ H+H+++ G+ D + +ALLD+Y + G + +
Sbjct: 486 KPNSVTLIAALSACARIG--ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 412 QRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471
FN + EK +W +++ HG + F M GV PD +TF+S+L C R+
Sbjct: 544 WNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 472 GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531
GM+ +G F SM + Y I P+ HY+C+VD+LGR G+L EA + ++P P +V +
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662
Query: 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591
LL ACRIH +VE+GE A + +++P G Y+L+ NLYA+ G W+ VA +RK M+ G+
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
Query: 592 RKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636
+ G SW +V +H F + D +HP+ +EI + E +MK
Sbjct: 723 TVDPGCSWVEVKGK--VHAFLTDDESHPQIKEINTVLEGFYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 4e-80
Identities = 149/501 (29%), Positives = 269/501 (53%), Gaps = 14/501 (2%)
Query: 145 LALIEMMRKG--LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMS 202
L L E++ G L ++ + AC K++ K ++ G+ + N ++
Sbjct: 107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166
Query: 203 TYSKCEVTGDANKVFRRMHDRNVISWTTMISM-----NREDAVSLFKEMRLDGVCPNDVT 257
+ KC + DA ++F M +RN+ SW T+I N +A +LF+EM DG T
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 258 FIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELS 317
F+ ++ A + + G+ +H +KT + + V LI MY++ ++D+ VFD +
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 318 CREIISWNALISGYAQNGLSLAAVQAFFGVIKES--KPNAYTFGSVLNAVGAAEDISLKH 375
+ ++WN++++GYA +G S A+ ++ +++S + +TF ++ + L+H
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYE-MRDSGVSIDQFTFSIMIRI--FSRLALLEH 343
Query: 376 GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALAR 435
++ H+ +I+ G D + +AL+D+Y K G + +++ VF+ K+ +W A+I+
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD 495
HG + F+ M +GV P+ +TFL+VL+ C +G+ +G +F SM +++ I+P
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 496 HYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555
HY+CM+++LGR G L+EA ++ + P P +++ +LL ACRIH N+E+G A+ L M
Sbjct: 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523
Query: 556 EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGD 615
P +YV++ NLY G A + + +K KG+ +W +V D H F SGD
Sbjct: 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD--HSFFSGD 581
Query: 616 NTHPRSEEIYRMAECLGSEMK 636
HP+S EIY+ + L E+
Sbjct: 582 RLHPQSREIYQKLDELMKEIS 602
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 9e-69
Identities = 151/486 (31%), Positives = 246/486 (50%), Gaps = 17/486 (3%)
Query: 37 KSDDALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGN 96
+ + AL M + V D Y C G ++ S + V +GN
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 97 ALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLR 156
A+++M+ R+G LV A VF +MP +D SWN ++ GY + G Y EA+ M+ G+R
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVR 184
Query: 157 LDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKV 216
D +F CG +L G+++H ++ G+ V V N L++ Y KC A V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 217 FRRMHDRNVISWTTMISMNRED-----AVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLV 271
F RM R+ ISW MIS E+ + LF MR V P+ +T +I A +
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 272 KEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGY 331
+ GR +HG +KT F + SVCN LI MY S ++EKVF + ++ +SW A+ISGY
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 332 AQNGLSLAAVQAFFGVIKES-KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390
+NGL A++ + + +++ P+ T SVL+A D L G + H + GL S
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD--LDVGVKLHELAERKGLIS 422
Query: 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALA-RHGDYESVMNQFKEM 449
+V +AL++MY K I ++ VF+ EK +WT+II+ L + +E+++ F++M
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI-FFRQM 481
Query: 450 ENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHY--SCMVDMLGRV 507
++P+S+T ++ L+ C R G + G+ + +L+ D + + ++D+ R
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLR---TGIGFDGFLPNALLDLYVRC 537
Query: 508 GRLEEA 513
GR+ A
Sbjct: 538 GRMNYA 543
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 4e-43
Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 7/315 (2%)
Query: 56 DAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVF 115
A TY + C+ + ++ + G + + Y+ N ++ M+ + G L++ARR+F
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 116 DEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNL 175
DEMP ++ SW I+ G G+Y EA EM G + +F A +
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 176 ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISM- 234
G+Q+H +K G V L+ YSKC DA VF M ++ ++W +M++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 235 ----NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP 290
E+A+ L+ EMR GV + TF +I S L++ + H I+T F +
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 291 SVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKE 350
L+ +Y+++ M+D+ VFD + + +ISWNALI+GY +G AV+ F +I E
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 351 S-KPNAYTFGSVLNA 364
PN TF +VL+A
Sbjct: 421 GVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 8e-42
Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 9/283 (3%)
Query: 3 MYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGF-EKSDDALSFALRMNLIGVVFDAVTYS 61
M+ K G A +F+ + ++ SW T++ G + + +FAL + DA +
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 62 --TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119
L G QLH ++K G+ + +V ALI MYS+ G + +AR VFD MP
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 120 NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGK 179
K +V+WN++L+GY G Y EA+ EM G+ +D +F+ LE K
Sbjct: 287 EKTTVAWNSMLAGYALHG-YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 180 QIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----M 234
Q H I+ G+ + L+ YSK DA VF RM +N+ISW +I+
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 235 NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMI 277
AV +F+ M +GV PN VTF+ ++ A L ++G I
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 4/184 (2%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFE---KSDDALSFALRMNLIGVVFDA 57
++MY K G + A C+F+ + V+WN++L+G+ S++AL M GV D
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117
T+S + Q H+ +++ G ++ AL+ +YS+WGR+ +AR VFD
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 118 MPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLEL 177
MP K+ +SWNA+++GY G G +A+ M+ +G+ +HV+F + SAC + E
Sbjct: 386 MPRKNLISWNALIAGYGNHG-RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 178 GKQI 181
G +I
Sbjct: 445 GWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-09
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 376 GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALAR 435
G R S + +G+A+L M+ + G + + VF + E+ F+W ++ A+
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD 495
G ++ + + M GVRPD TF VL CG + +GR + +++ + E D
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVD 223
Query: 496 HYSCMVDMLGRVGRLEEAEELVGQIP 521
+ ++ M + G + A + ++P
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMP 249
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470
+ +I + G E + F EM+ +G++P+ T+ ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 33/264 (12%)
Query: 327 LISGYAQNGLSLAAVQAFFGVIKES-----KPNAYTFGSVLNAVGAAEDISLKHGQRCHS 381
LIS A++G V A F V E + N +TFG++++ A ++ G +
Sbjct: 478 LISTCAKSG----KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG--AYG 531
Query: 382 HIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-KSE--------FAWTAIISA 432
+ + D +V +AL+ G+ G++ R F+ E K+E A++ A
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAV---DRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492
A G + ++ + ++ + + C + G ++D M K ++P
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKP 647
Query: 493 SPDHYSCMVDMLGRVGRLEEAEELV--GQIPG-GPGLSVLQSLLGACRIHGN----VEMG 545
+S +VD+ G G L++A E++ + G G SL+GAC N +E+
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 546 ERIADALMKMEPAGSGSYVLMSNL 569
E I +K+ P S L++ L
Sbjct: 708 EDI--KSIKLRPTVSTMNALITAL 729
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML 485
+T +IS A+ G +++ F EM N GV + TF +++ C R G + K + ++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-GIM 533
Query: 486 KDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI-----PGGPGLSVLQSLLGACRIHG 540
+ +++P ++ ++ G+ G ++ A +++ ++ P P + +L+ AC G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 541 NVEMGERIADALMKMEPAGSGS-YVLMSNLYAEKGDWEMVAILRKGMKSKGVR-KEVGFS 598
V+ + + + + G+ Y + N ++KGDW+ + MK KGV+ EV FS
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 20/63 (31%)
Query: 224 NVISWTTMISM-----NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIH 278
+V+++ T+I E+A+ LF EM+ G+ PN T+ SI +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY-------SI--------LID 46
Query: 279 GLC 281
GLC
Sbjct: 47 GLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 46/262 (17%)
Query: 56 DAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVF 115
D +T + C + +++ +I ++ + V + S+ G A ++
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 116 DEMPNK----DSVSWNAIL--SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASAC 169
D+M K D V ++A++ +G+ D D +A L + ++G++L VS++S AC
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLD---KAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 170 GHEKNLELGKQIHGVSIK-MGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISW 228
+ KN + +++ IK + VS N L++ CE N++ +
Sbjct: 695 SNAKNWKKALELY-EDIKSIKLRPTVSTMNALITAL--CE----GNQLPK---------- 737
Query: 229 TTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIH----GLCIKT 284
A+ + EM+ G+CPN +T+ L+ A + G + IK
Sbjct: 738 ----------ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 285 NFLSEPSVCNCLITM-YARFES 305
N + +C C+ + RFE
Sbjct: 788 NLV----MCRCITGLCLRRFEK 805
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 96 NALITMYSRWGRLVEARRVFDEMPNK----DSVSWNAILSGY 133
N LI Y + G++ EA ++F+EM + + +++ ++ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRP 456
+ A++ ALA+ GD + + +EM+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 321 IISWNALISGYAQNGLSLAAVQAFFGVIKES--KPNAYTFGSVLNA 364
++++N LI GY + G A++ F +K+ KPN YT+ +++
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALK-LFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 1 MNMYCKSGQFDKALCIFNNLNN----PDIVSWNTVLSGF 35
++ YCK G+ ++AL +FN + P++ +++ ++ G
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 9e-04
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS 164
D V++N ++ GY + G EA+ EM ++G++ + +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVE-EALKLFNEMKKRGIKPNVYTYSI 43
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 424 FAWTAIISALARHGDYESVMNQFKEMENKGV 454
+ ++IS + G E + FKEM+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 23 PDIVSWNTVLSGFEKS---DDALSFALRMNLIGVVFDAVTYSTALS-FC 67
PD+V++NT++ G+ K ++AL M G+ + TYS + C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS 458
+ +I L + G E + FKEM+ +G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.36 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.19 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.29 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.12 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.08 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.69 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.5 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.43 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.43 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.03 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.91 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.83 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.3 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.85 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.35 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.99 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.35 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.15 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.42 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 89.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 89.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.2 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.21 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.68 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.91 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.71 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.67 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.3 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.67 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.46 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.86 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.4 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.0 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.41 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.12 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.07 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.07 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.89 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.73 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.98 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.45 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.39 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 81.15 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 80.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.15 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-109 Score=915.81 Aligned_cols=640 Identities=34% Similarity=0.625 Sum_probs=628.9
Q ss_pred CcccccCCChhHHHHHhhcCCCCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHh
Q 006364 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGL 77 (648)
Q Consensus 1 i~~~~~~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 77 (648)
|++|+++|++++|+++|++|++||+++||+||.+|++.+ +|+++|++|...|+.||.+||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 357899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC
Q 006364 78 QLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRL 157 (648)
Q Consensus 78 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p 157 (648)
++|..+.+.|+.||+.++|+||++|+++|+++.|.++|++|++||.++||++|.+|++.| .+++|+++|.+|.+.|+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc----
Q 006364 158 DHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---- 233 (648)
Q Consensus 158 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---- 233 (648)
|..||+.+|.+|++.|+++.|.+++..+.+.|+.||..+||+||.+|+++|++++|.++|+.|..||+++||++|.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 234 -MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 234 -g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
|++++|+++|++|...|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..++++||++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCch
Q 006364 313 FDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDP 392 (648)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 392 (648)
|++|.++|+++||++|.+|+++|+.++|+.+|++|..+++||..||++++.+|++.| .++.+.++|..+.+.|+.++.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g--~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG--ALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc--hHHHhHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999998899999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
.++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADAL 552 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 552 (648)
++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999997889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHH
Q 006364 553 MKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLG 632 (648)
Q Consensus 553 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 632 (648)
.+++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||+++ +++|.|++||.+||+.++||..|+.|.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~--~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK--GKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC--CEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhc-------------cchhhhhhhc
Q 006364 633 SEMK-------------YLNSKRERAI 646 (648)
Q Consensus 633 ~~~~-------------~~~~~~~~~~ 646 (648)
.+|+ .++|+||+.+
T Consensus 762 ~~~~~~g~~~~~~~~~~~~~~~k~~~~ 788 (857)
T PLN03077 762 EKMKASGLAGSESSSMDEIEVSKDDIF 788 (857)
T ss_pred HHHHhCCcCCCcchhccccHHHHHHHH
Confidence 9987 2467777664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-86 Score=715.29 Aligned_cols=522 Identities=29% Similarity=0.501 Sum_probs=510.3
Q ss_pred CCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 120 NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
.++..+|+.+|.++++.| .+++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 357789999999999999 9999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHH
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKE 273 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 273 (648)
.|+++|+++|++++|.++|++|++||+++||+++. |++++|+++|++|...|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCC
Q 006364 274 GRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESK 352 (648)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 352 (648)
+.+++..+.+.|+.||..++++||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+ ++.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 006364 353 PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISA 432 (648)
Q Consensus 353 p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 432 (648)
||..||++++.+|++.+ .++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g--~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLA--LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhcc--chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++.+++|++..+|..|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc--------------cchhhhhhhc
Q 006364 593 KEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK--------------YLNSKRERAI 646 (648)
Q Consensus 593 ~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~--------------~~~~~~~~~~ 646 (648)
|.||+|||+++ +++|.|++||.+||+.++||+.|++|..+|+ +++++|++.+
T Consensus 561 k~~g~s~i~~~--~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 561 MHPACTWIEVK--KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSG 626 (697)
T ss_pred cCCCeeEEEEC--CeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHH
Confidence 99999999999 9999999999999999999999999999987 4567777654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=710.78 Aligned_cols=567 Identities=28% Similarity=0.439 Sum_probs=546.6
Q ss_pred CCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH
Q 006364 22 NPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL 98 (648)
Q Consensus 22 ~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (648)
.|+..++|.+|.+|++.+ +|+.+|+.|.+.|+.|+..+|..++.+|...+.++.+.+++..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 467788999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHH
Q 006364 99 ITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (648)
+++|+++|+++.|.++|++|++||+++||++|.+|++.| .+++|+++|++|...|+.||..||+++|++|+..++++.+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCC
Q 006364 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCP 253 (648)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p 253 (648)
.+++..+.+.|+.||..++|+||.+|+++|++++|.++|++|+.+|+++||++|. |++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQ 333 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 333 (648)
|..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++||.+|+++|++++|.++|++|..+|+++||++|.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 334 NGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.|++++|+++|++|.+ ++.||..||++++.+|++.| +++.+.+++..+.+.|+.|+..++++|+++|+++|++++|.
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 99999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 413 RVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.|
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999986 59999999999999999999999999999999877 9999
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKME-PAGSGSYVLMSNLYA 571 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~ 571 (648)
+..++++|+++|+++|++++|.++|+.+ +||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 9999999999999999999999999988 7889999999999999999999999999988765 456788888888999
Q ss_pred hcCCcHHHHHHHHHHh-hCCCccCC
Q 006364 572 EKGDWEMVAILRKGMK-SKGVRKEV 595 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~-~~~~~~~~ 595 (648)
+.|++++|.++++.|+ +.|+.|+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999998 56877764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=585.46 Aligned_cols=464 Identities=23% Similarity=0.390 Sum_probs=449.2
Q ss_pred CCcchHHHHHHhhccCC---hHHHHHHHHHhCC-CCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH
Q 006364 23 PDIVSWNTVLSGFEKSD---DALSFALRMNLIG-VVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL 98 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (648)
++..+|+++|.+|.+.+ +|+++|..|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 56679999999999988 9999999999764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHH
Q 006364 99 ITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (648)
+++|+++|+++.|.++|++|++||.++||++|.+|++.| ++++|+++|++|.+.|+.||..||+.++++|++.|+.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCC
Q 006364 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCP 253 (648)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p 253 (648)
.+++..+.+.|+.+|..+||+||++|+++|++++|.++|+.|+++|+++||++|. |+.++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQ 333 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 333 (648)
|..||++++.+|++.|+++.|.+++..|.+.|++||..++++||++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHhhcCCHHHH
Q 006364 334 NGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK-VGLDSDPIVGSALLDMYGKRGSIFES 411 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 411 (648)
.|+.++|+++|++|.. |+.||..||++++.+|++.| ..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g--~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG--LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999 99999999999999999999 99999999999986 69999999999999999999999999
Q ss_pred HHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 412 QRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
.+++++|. .|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999986 57999999999999999999999999999975 5665 679999999999999999999999999877 7
Q ss_pred CCC
Q 006364 490 IEP 492 (648)
Q Consensus 490 ~~p 492 (648)
+.+
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-70 Score=587.33 Aligned_cols=496 Identities=16% Similarity=0.236 Sum_probs=453.7
Q ss_pred cccccCCChhHHHHHhhcCCCCCcc-----hHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccCh
Q 006364 2 NMYCKSGQFDKALCIFNNLNNPDIV-----SWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGF 73 (648)
Q Consensus 2 ~~~~~~g~~~~A~~~f~~~~~p~~~-----~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 73 (648)
+.|++.|++++|+++|+.|++++.. .++.++.+|.+.+ +|+.+|+.|.. ||..+|+.+|.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 3567889999999999999876554 4556777788887 89999998875 9999999999999999999
Q ss_pred hhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC----CCCcchHHHHHHHHHcCCCChHHHHHHHHH
Q 006364 74 LFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP----NKDSVSWNAILSGYTQDGDYGVEAILALIE 149 (648)
Q Consensus 74 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~~a~~~~~~ 149 (648)
+.|.++|+.|.+.|+.||..+|+.||++|+++|+++.|.++|++|. .||.++||+||.+|++.| ++++|+++|.+
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~ 532 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 489999999999999999 99999999999
Q ss_pred HHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHH--hcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC----C
Q 006364 150 MMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIK--MGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD----R 223 (648)
Q Consensus 150 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~ 223 (648)
|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|+.|.+ |
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 67999999999999999999999999999999986 5
Q ss_pred CchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 224 NVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 224 ~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
+..+||++|. |++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6799999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhH
Q 006364 299 MYARFESMQDSEKVFDELS----CREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISL 373 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~ 373 (648)
+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.. ++.||..||++++.+|++.| ++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G--~l 770 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD--DA 770 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC--CH
Confidence 9999999999999999995 68999999999999999999999999999999 99999999999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHH------HhhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 374 KHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV------FNETQEKSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
+.|.++|..|.+.|+.||..+|++++.+|.+ ++++|.++ |+.+...+...| .+.|+.+|+
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~ 836 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW------------TSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch------------HHHHHHHHH
Confidence 9999999999999999999999999977542 34444444 333222233333 456999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+|.+.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999998888888999888888888554 6777899999999998543 478999999986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=576.77 Aligned_cols=512 Identities=17% Similarity=0.183 Sum_probs=473.9
Q ss_pred CCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCC-CCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHH
Q 006364 53 VVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGL-DSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131 (648)
Q Consensus 53 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 131 (648)
..++...|..++..|++.|+++.|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788899999999999999999999999999995 5778888899999999999999999999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 006364 132 GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 132 ~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (648)
+|++.| +.+.|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++
T Consensus 446 a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHH--hcCCCC
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIK--TNFLSE 289 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 289 (648)
+|.+ +|++|...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||
T Consensus 525 eAl~--------------------------lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 525 KAFG--------------------------AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHHH--------------------------HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 6555 456777889999999999999999999999999999999987 689999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHH
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSCR----EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNA 364 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a 364 (648)
..+|++||.+|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|+++|++|.. |+.||..||+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999754 568999999999999999999999999999 999999999999999
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ----EKSEFAWTAIISALARHGDYE 440 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~ 440 (648)
|++.| +.++|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+++
T Consensus 659 ~~k~G--~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 659 AGHAG--DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999 999999999999999999999999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----hcC--------
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLG----RVG-------- 508 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----~~g-------- 508 (648)
+|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..+. +++
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999877 99999999999987643 222
Q ss_pred -----------CHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHhc
Q 006364 509 -----------RLEEAEELVGQIP---GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM-EPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 509 -----------~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~ 573 (648)
..++|..+|++|. ..||..+|+.++.++...+..+.+..+++.+... .+++..+|..|++.+.+.
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 2467999999987 5699999999998777888888888888876543 467788999999987332
Q ss_pred CCcHHHHHHHHHHhhCCCccCCc
Q 006364 574 GDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 574 g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
.++|..++++|...|+.|+..
T Consensus 896 --~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 --DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred --hHHHHHHHHHHHHcCCCCCcc
Confidence 358999999999999998864
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.25 Aligned_cols=533 Identities=11% Similarity=0.018 Sum_probs=282.9
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|...+..+.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+.+.
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4444444444332 1233444444444445555555555555444432 1223334444444445555555555544433
Q ss_pred CC---CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcch
Q 006364 120 NK---DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSV 196 (648)
Q Consensus 120 ~~---~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (648)
+. +...+..++..+.+.| ++++|..++..+... ..++..++..+...+...|+++.|.+.+..+.+.. +.+...
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 501 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSG-QFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA 501 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence 21 1223334444555555 555555555555442 12334455555555555555555555555555432 223334
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCC---CchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 006364 197 GNVLMSTYSKCEVTGDANKVFRRMHDR---NVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIG 268 (648)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (648)
+..+...+...|++++|.+.|+.+... +...+..+.. |+.++|...|+++...+ +.+...+..+...+...
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 445555555555555555555554331 2222222222 55555666555554432 12334444555555566
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 269 NLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+.+.+ .+...|..+...+...|++++|...|+
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665555432 34445555666666666666666666655432 233455555556666666666666666
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CCh
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSE 423 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 423 (648)
++....+.+..++..+...+...| +.+++..++..+.+.+ +.+...+..+...|.+.|++++|.+.|..+.. |+.
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAK--RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 655544444555555666666666 6666666666655543 33444555556666666666666666665442 333
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
.++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|.++|+.+.+. .|+ ...+..+..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~ 812 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAW 812 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 45555566666666666666666666553 2334455555556666666666666666666533 333 555666666
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
.+...|+ .+|+..++++. .+.++.++..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 55666665543 22334455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 006364 581 ILRKGMK 587 (648)
Q Consensus 581 ~~~~~m~ 587 (648)
+++++|.
T Consensus 892 ~~~~~~~ 898 (899)
T TIGR02917 892 KELDKLL 898 (899)
T ss_pred HHHHHHh
Confidence 6666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=302.47 Aligned_cols=517 Identities=12% Similarity=0.061 Sum_probs=345.7
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHc
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQ 135 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 135 (648)
.+..+...+...|+++.|...+..+.... +.+...+..+...+.+.|++++|.++|+++.+ .+...|..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 33444444445555555555555544432 22344455555555555555555555554432 133344444455555
Q ss_pred CCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 006364 136 DGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANK 215 (648)
Q Consensus 136 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (648)
.| ++++|...|..+...... +......++..+.+.|+++.|..++..+.+. .+.+..++..+...|...|++++|..
T Consensus 410 ~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 410 QG-DPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred CC-ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 55 555555555555443321 1223334445556666666666666666543 24455667777777777777777777
Q ss_pred HHhcCCCCC---chhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 006364 216 VFRRMHDRN---VISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 216 ~~~~~~~~~---~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (648)
.|+.+.+.+ ...+..+.. |++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 777664421 222222211 77777777777776643 2345566667777777777777777777776654 3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 006364 288 SEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNA 364 (648)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a 364 (648)
.+...+..++..|.+.|++++|..+++.+.. .+...|..+..++...|++++|+..|+++....+.+...+..+...
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4555666777777778888888777777653 3456777777788888888888888887776445566667777777
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYES 441 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 441 (648)
+...+ +.+.|..++..+.+.. +.+...+..+...+...|++++|.++++.+.+ .+...|..+...+...|++++
T Consensus 645 ~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 645 YAVMK--NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHcC--CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 77777 7788888877777643 33566777777888888888888888877754 255667777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 442 VMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
|+..|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .|+ ...+..+...|.+.|++++|...++++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 88888888774 455566777777888888888888888887654 444 777888888888888888888888876
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 521 P--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 521 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
. .++++.++..+...+...|+ .+|...++++.+..|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 44567778888888888888 778888888888888888888888888888888888888888877644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-23 Score=235.63 Aligned_cols=565 Identities=12% Similarity=0.063 Sum_probs=417.6
Q ss_pred cccCCChhHHHHHhhcCCC--CCcchHH-----------------HHHHhhccCC---hHHHHHHHHHhCCCCCChh-hH
Q 006364 4 YCKSGQFDKALCIFNNLNN--PDIVSWN-----------------TVLSGFEKSD---DALSFALRMNLIGVVFDAV-TY 60 (648)
Q Consensus 4 ~~~~g~~~~A~~~f~~~~~--p~~~~~~-----------------~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~-~~ 60 (648)
+.+.|+.++|.+.+++..+ |+...+- .....+.+.+ +|...|+.+..... |+.. ..
T Consensus 72 ~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~ 150 (1157)
T PRK11447 72 LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAV 150 (1157)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHH
Confidence 4678999999999999864 5443321 1112344445 89999999886543 3322 22
Q ss_pred HHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCc------chH--------
Q 006364 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDS------VSW-------- 126 (648)
Q Consensus 61 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~-------- 126 (648)
..........|+.++|...++.+.+.. +.++..+..+...+...|+.++|...|+++..... ..|
T Consensus 151 ~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 151 EYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP 229 (1157)
T ss_pred HHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC
Confidence 122222335689999999999999875 44567788888999999999999999998754211 111
Q ss_pred ---------HHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchH
Q 006364 127 ---------NAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVG 197 (648)
Q Consensus 127 ---------~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 197 (648)
...+..+-... ....|...+..+......|+... ...-..+...|++++|...++..++.. +.+...+
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred CChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 11111112222 33455555555544333333222 122345667899999999999999864 3467888
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCC--CCc---hhhHHH----------------h-cCChhhHHHHHHHHHHCCCCCCh
Q 006364 198 NVLMSTYSKCEVTGDANKVFRRMHD--RNV---ISWTTM----------------I-SMNREDAVSLFKEMRLDGVCPND 255 (648)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----------------i-~g~~~~a~~~~~~m~~~g~~p~~ 255 (648)
..|...|.+.|++++|+..|++..+ |+. ..|..+ + .|++++|...|++..... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 8999999999999999999988765 321 112111 1 189999999999998863 2245
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC------------ccc
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE------------IIS 323 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------~~~ 323 (648)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.++|..+++.+.... ...
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 566778888999999999999999999864 344556667777774 467899999998875321 123
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 006364 324 WNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG 403 (648)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (648)
+..+...+...|++++|++.|++..+..+-+...+..+...+.+.| +.++|...++.+.+... .++..+..+...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G--~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG--QRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 5556778889999999999999998855556777888889999999 99999999999887543 34555555666778
Q ss_pred hcCCHHHHHHHHhhcCCCC----h---------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 404 KRGSIFESQRVFNETQEKS----E---------FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
+.|+.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 8999999999999876421 1 1123456778899999999999872 34455677788888999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-G-PGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|+...+. .|+ ...+..++..|...|++++|++.++.... . .+...+..+..++...|+.++|.+
T Consensus 616 ~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999754 676 88999999999999999999999998762 2 456677888889999999999999
Q ss_pred HHHHHHhcCCCCch------hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 548 IADALMKMEPAGSG------SYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 548 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+++++++..|+++. .+..++.++...|++++|...+++..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988766543 66778999999999999999988774
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-22 Score=223.59 Aligned_cols=570 Identities=9% Similarity=0.002 Sum_probs=392.2
Q ss_pred ccCCChhHHHHHhhcCC--CC-CcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhH-----------------H
Q 006364 5 CKSGQFDKALCIFNNLN--NP-DIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTY-----------------S 61 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~--~p-~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~-----------------~ 61 (648)
...++.+.|.+.++++. .| |...+..+...+.+.+ +|...++++.+.. |+...+ .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHH
Confidence 34677888888888765 34 4455666666666666 7888888887754 322222 2
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH-HHHHHhCCChhHHHHHhccCCC--C-CcchHHHHHHHHHcCC
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL-ITMYSRWGRLVEARRVFDEMPN--K-DSVSWNAILSGYTQDG 137 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 137 (648)
.+.+.+...|++++|.+.++.+.+.+ +|+....... .......|+.++|++.|+++.+ | +...+..+-..+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 23345678889999999999888654 3332211111 1222345888999999988875 3 4456777778888888
Q ss_pred CChHHHHHHHHHHHHCCCC----------------CCh---hhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 138 DYGVEAILALIEMMRKGLR----------------LDH---VSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~----------------p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
+.++|+..++++...... ++. ..+...+..+-.....+.+...+....+....|+.. ..
T Consensus 196 -~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~ 273 (1157)
T PRK11447 196 -RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-AR 273 (1157)
T ss_pred -CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HH
Confidence 888999999888653210 000 012222222233333444555555444333233321 12
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCC--C-CchhhHHHhc-----CChhhHHHHHHHHHHCCCCC-ChhhHH----------
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHD--R-NVISWTTMIS-----MNREDAVSLFKEMRLDGVCP-NDVTFI---------- 259 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p-~~~~~~---------- 259 (648)
.+-..+...|++++|...|+.... | +...+..+-. |++++|...|++........ ....+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 334567788999999999988765 3 3333332222 89999999999887653221 111111
Q ss_pred --HHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhc
Q 006364 260 --GLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQN 334 (648)
Q Consensus 260 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 334 (648)
..-..+...|++++|...++.+.+.. +.+...+..+..+|...|++++|++.|++..+. +...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12335678899999999999988864 445666777888999999999999999887643 3445666666664 4
Q ss_pred CCcHHHHHHHHHhHhCCC---------CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 006364 335 GLSLAAVQAFFGVIKESK---------PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405 (648)
Q Consensus 335 g~~~~A~~~~~~m~~~~~---------p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (648)
++.++|+..++.+....+ .....+..+...+...+ +.++|...++...+... .++..+..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 578889888876543110 01123344556667778 99999999999887653 3566777889999999
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHhcccCc
Q 006364 406 GSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI---------TFLSVLTVCGRNGM 473 (648)
Q Consensus 406 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~ 473 (648)
|++++|...|+.+.+ | +...+..+...+...++.++|+..++++......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998743 3 45556666666778899999999988765432222221 12345567888999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 474 IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.++|..+++. ..++...+..+...+.+.|++++|++.+++.. .+.+...+..++..+...|+.++|++.+++
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 12346677889999999999999999999876 345678899999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 552 LMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+.+..|+++..+..++.++...|++++|.++++++....
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-19 Score=197.49 Aligned_cols=547 Identities=10% Similarity=0.014 Sum_probs=292.6
Q ss_pred cCCChhHHHHHhhcCCC--CC-cchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHH
Q 006364 6 KSGQFDKALCIFNNLNN--PD-IVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQL 79 (648)
Q Consensus 6 ~~g~~~~A~~~f~~~~~--p~-~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 79 (648)
..|++++|...|++..+ |+ ...+..+...|.+.+ +|...+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 35999999999998763 54 556788888888888 899998888875 34555554544333 888899999
Q ss_pred HHHHHHhCCCCCcchHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cchHHHH-HHHHHcCCCChHHHHHHHH
Q 006364 80 HSLIVKFGLDSEVYVGNALITM--------YSRWGRLVEARRVFDEMPNKD--SVSWNAI-LSGYTQDGDYGVEAILALI 148 (648)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~~a~~~~~ 148 (648)
++.+.+.. +.+..++..+... |.+.+....+++ .....|+ ....... ...|.+.+ ++++|+.++.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTLYN 206 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 99999875 3445555555555 777766666666 3333343 3334444 78999999 9999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhcC-CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC-----
Q 006364 149 EMMRKGLRLDHVSFTSAASACGH-EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD----- 222 (648)
Q Consensus 149 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 222 (648)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..|+.+...+...|.+.|+.++|.+++++++.
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999976433 3334455556666 355 666666442 3446888899999999999999999999999875
Q ss_pred CCchhhHHHhc-----------------------------------CChhhHHHHHHHHHHCCCCCChhhHHH-------
Q 006364 223 RNVISWTTMIS-----------------------------------MNREDAVSLFKEMRLDGVCPNDVTFIG------- 260 (648)
Q Consensus 223 ~~~~~~~~li~-----------------------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~------- 260 (648)
|+..+|--.+. +.++-+.++ ..+.|.....-.
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHHHHHHhhccc
Confidence 33333332222 111111111 113332222100
Q ss_pred ---------------------------HHHHHhcCCchHHHHHHHHHHHHh-c-CCCCchhHHHHHHHHHhcCCh---HH
Q 006364 261 ---------------------------LIHAISIGNLVKEGRMIHGLCIKT-N-FLSEPSVCNCLITMYARFESM---QD 308 (648)
Q Consensus 261 ---------------------------ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~---~~ 308 (648)
+---....|+.++|.+++...... + -..+....+-|+..|.+.+.+ .+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 111112334444444444444331 0 111222333445555554441 11
Q ss_pred HHHHHh-------------------------hcCC---C--CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH
Q 006364 309 SEKVFD-------------------------ELSC---R--EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF 358 (648)
Q Consensus 309 a~~~~~-------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 358 (648)
+..+-. .... . +...|..+..++.. ++.++|+..|.+..... |+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~ 512 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQH 512 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHH
Confidence 211100 0000 1 22334444444443 45555555554444311 232222
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHH---HHHHHHh
Q 006364 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTA---IISALAR 435 (648)
Q Consensus 359 ~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~ 435 (648)
..+..++...| +.++|...++.+... +|+...+..+...+.+.|++++|...|+...+.++..++. +...+..
T Consensus 513 L~lA~al~~~G--r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 513 RAVAYQAYQVE--DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 22223333444 555555555554332 2222233344445555555555555555444322221221 1222223
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
.|++++|+..|++..+ ..|+...+..+..++.+.|++++|+..++.... ..|+ ...+..+...+...|++++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3555555555555554 234444555555555555555555555555542 2444 445555555555555555555
Q ss_pred HHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 515 ELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 515 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
..+++.. .+.++..+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.+.+-++
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555433 222344555555555555555555555555555555555555555555555555555555444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-18 Score=187.88 Aligned_cols=526 Identities=7% Similarity=-0.083 Sum_probs=366.9
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|+..|++..+.... +...+..|.+.+...|+.++|....+..++.. |+...+..++..+ ++.++|..+++++.
T Consensus 62 ~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 62 TAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 899999998876544 47788889999999999999999999998874 4444444434333 89999999999987
Q ss_pred C--CC-cchHHHHHHH--------HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHhcCCCChhHHHHHHHHHHH
Q 006364 120 N--KD-SVSWNAILSG--------YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSA-ASACGHEKNLELGKQIHGVSIK 187 (648)
Q Consensus 120 ~--~~-~~~~~~li~~--------~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~ 187 (648)
. |+ ...+..+... |.+.+ +|.+.++ .......|+..+.... .+.|...++++.+..++..+.+
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~e----qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQLP----VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhHH----HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 5 43 2333333333 55544 5555555 4443445556655555 8899999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHh-CCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCC-CChhhHHH
Q 006364 188 MGYGTHVSVGNVLMSTYSK-CEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVC-PNDVTFIG 260 (648)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~-p~~~~~~~ 260 (648)
.+. .+..-...|-.+|.. .++ +++..+++...+.++..+..+.. |+.++|..+++++...-.. |+..++..
T Consensus 211 ~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 211 QNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred cCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 873 345556667778887 477 88888877655556666666555 9999999999997654322 43333333
Q ss_pred H------------------------------HHHHhcCCchHHHHHHHHH--------HHHhcC----------------
Q 006364 261 L------------------------------IHAISIGNLVKEGRMIHGL--------CIKTNF---------------- 286 (648)
Q Consensus 261 l------------------------------l~~~~~~~~~~~a~~~~~~--------~~~~~~---------------- 286 (648)
+ +..+.+.+.++.++++... +.-.+.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 2 2333444444444433210 000000
Q ss_pred ----CCCchhHHHHHHHHHhcCChHHHHHHHhhcCC-C-Cc----ccHHHHHHHHHhcCC---cHHHHHH----------
Q 006364 287 ----LSEPSVCNCLITMYARFESMQDSEKVFDELSC-R-EI----ISWNALISGYAQNGL---SLAAVQA---------- 343 (648)
Q Consensus 287 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-~~----~~~~~li~~~~~~g~---~~~A~~~---------- 343 (648)
+-+....--+.....+.|+.++|..+|...-. + +. ..-+-++..|.+.+. ..+++.+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 11222222233334567888888888877654 1 11 233356666666654 3333222
Q ss_pred ------------HHHhHh--CC-CC--CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 344 ------------FFGVIK--ES-KP--NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 344 ------------~~~m~~--~~-~p--~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
+..... +. ++ +...+..+..++.. + ..++|...+....... |+......+...+...|
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~--~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T--LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE 523 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C--CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC
Confidence 222222 22 33 55666666666655 5 7777888777776554 44444444555557899
Q ss_pred CHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
++++|...|+.+.. ++...+..+...+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999997654 445567778888999999999999999998853 443 3333444455667999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 484 MLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 484 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
..+ +.|+...|..+..++.+.|++++|...+++.. .+.+...+..+..++...|+.++|...++++++..|+++.
T Consensus 602 AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 602 SLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 974 47888899999999999999999999999876 3456778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+..++.+|...|++++|...+++..+
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999987764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-20 Score=176.12 Aligned_cols=448 Identities=13% Similarity=0.097 Sum_probs=319.9
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcc-h-HHHHH-HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcC
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPNKDSV-S-WNAIL-SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGH 171 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~li-~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (648)
...|..-..+.|++.+|++.-...-+.|.. + -..++ ..+.+.. ..+....--....+. ..--..+|..+-+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS-RLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc-chhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 334555555667777777765555442221 1 11222 2333333 443333222222221 12234567667777777
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCC
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGV 251 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~ 251 (648)
.|+++.|..++..+++.. +..+..|..+..++...|+.+.|...|....+ +
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq----------------------------l 179 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ----------------------------L 179 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----------------------------c
Confidence 777777777777776653 22455666666666777766666666544433 2
Q ss_pred CCChhhHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHH
Q 006364 252 CPNDVTFIGLIHA-ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI---ISWNAL 327 (648)
Q Consensus 252 ~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l 327 (648)
.|+.....+-+.- ....|.+++|..-+-+.++.. +-=...|+.|...+...|++..|+..|++..+-|+ ..|-.|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL 258 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL 258 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence 3443333322222 233566666666665555432 11234567777777778888888888877765443 567777
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS 407 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (648)
...|...+.+++|+..|.+...-.+-....+..+...|...| .++.|...+++.+... +.-+..|+.|..++...|+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG--~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQG--LLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccc--cHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 888888888888888888777644556677777777788888 8889988888887654 2346778899999999999
Q ss_pred HHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 408 IFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 408 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+.+|.+.+.+... | ..-+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-..|++++|+..|++
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999987764 3 456888999999999999999999999887 6676 46788999999999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.. .|.|+ ...|+.|...|-..|+.+.|.+.+.+.. ..| -....+.|...+...|++.+|...|+.++++.|+.+
T Consensus 414 al---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 414 AL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 86 67999 9999999999999999999999998865 444 466889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+|..++.++---.+|.+-.+.
T Consensus 491 dA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred hhhhHHHHHHHHHhcccchHHH
Confidence 9999999998888888774333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=164.48 Aligned_cols=422 Identities=11% Similarity=0.104 Sum_probs=317.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006364 126 WNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYS 205 (648)
Q Consensus 126 ~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (648)
...+.....+.| ++.+|.+.-...-..+. .+..+...+-..+.+..+++...+--....+.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~g-d~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGG-DYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhcc-CHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 455556666777 78777766554433321 112222222223444444444333222222211 223345555666666
Q ss_pred hCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 206 KCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
..|++++|+.++ +.+.+ ++| ....|..+..++...|+.+.|.+.+...++.
T Consensus 128 erg~~~~al~~y--------------------------~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 128 ERGQLQDALALY--------------------------RAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HhchHHHHHHHH--------------------------HHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 666555555554 44444 244 4567888888999999999999999888775
Q ss_pred cCCCCch-hHHHHHHHHHhcCChHHHHHHHhhcCC--CC-cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 285 NFLSEPS-VCNCLITMYARFESMQDSEKVFDELSC--RE-IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 285 ~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
+ |+.. ..+.+.......|++.+|...+.+..+ |. .+.|+.|...+-..|+...|+..|++..+-.+--...|..
T Consensus 180 n--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 180 N--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred C--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 3 4433 334455566678999999888877653 33 3789999999999999999999999988733334556777
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHG 437 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 437 (648)
+-+.+...+ .++.|...+....... +.....+..+...|..+|.++-|+..+++..+ | -...|+.|..++-..|
T Consensus 258 LGnV~ke~~--~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 258 LGNVYKEAR--IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 777777777 7888888777766543 23456777888889999999999999998765 3 4678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
++.+|.+.|.+... +.|+ ....+.|...+...|.+++|..+|.... .+.|. ...++.|...|..+|++++|..
T Consensus 335 ~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 335 SVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred chHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 99999999999987 5566 4678899999999999999999999886 66898 8889999999999999999999
Q ss_pred HHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 516 LVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 516 ~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+++.. .+|+ ...++.+...+...|++..|.+.+.+++..+|.-+.++..|+.+|...|+..+|+.-+++..+
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 998865 5665 568999999999999999999999999999999999999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=174.56 Aligned_cols=290 Identities=11% Similarity=0.161 Sum_probs=192.2
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC-------cccHHHHHHHHHhcCCcH
Q 006364 266 SIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE-------IISWNALISGYAQNGLSL 338 (648)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 338 (648)
...|+++.|...+..+.+.+ +.+..++..+...|...|++++|..+++.+.... ...+..+...|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44455555555555555542 2233345555555555555555555555443211 123444444555555555
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
+|+..|+++.+..++ +..+++.++..|.+.|++++|.+.++.+
T Consensus 125 ~A~~~~~~~l~~~~~-------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 125 RAEELFLQLVDEGDF-------------------------------------AEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHcCCcc-------------------------------------hHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 555555544432222 3444555555666666666666666555
Q ss_pred CCCC--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC
Q 006364 419 QEKS--------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI 490 (648)
Q Consensus 419 ~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 490 (648)
.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 4311 1134566777788888899998888888742 223556777778888899999999999988754
Q ss_pred CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 491 EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 491 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
.|+ ..++..++.+|.+.|++++|...++++. ..|+...+..++..+...|+++.|..+++++.+..|++.. +..+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHH
Confidence 444 4667888899999999999999988865 4577677788888999999999999999999999888764 44444
Q ss_pred HHHHh---cCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 568 NLYAE---KGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 568 ~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
..+.. .|+.+++..++++|.+++++++|...
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 44442 56999999999999999999999744
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-16 Score=170.31 Aligned_cols=419 Identities=11% Similarity=0.022 Sum_probs=277.3
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTY 204 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (648)
.+...-..+.+.| ++++|+..|.+... +.|+...|..+-.++.+.|+++.|...+...++.. +.+...+..+-.+|
T Consensus 129 ~~k~~G~~~~~~~-~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNK-DFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3445666778888 99999999998876 46787888888888999999999999999888764 33456778888889
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
...|++++|...|......+.. +......++..+.. ..+........+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~l~----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGF---------------------------RNEQSAQAVERLLK----KFAESKAKEILET 253 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---------------------------ccHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 9999999888776543211100 00000000000000 0011111111111
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHHHHHH---HhcCCcHHHHHHHHHhHh-C-CCC-CH
Q 006364 285 NFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI---ISWNALISGY---AQNGLSLAAVQAFFGVIK-E-SKP-NA 355 (648)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~-~~p-~~ 355 (648)
. +++...+..+.. |...........-++...+.+. ..+..+...+ ...+++++|++.|++... + ..| +.
T Consensus 254 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 254 K-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred C-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 1 111111111111 2111111111111111111111 1111111111 234677888888888776 3 233 34
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 006364 356 YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISA 432 (648)
Q Consensus 356 ~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 432 (648)
..+..+...+...| +++.|...+....+.. +.....+..+...+...|++++|...|+...+ .+...|..+...
T Consensus 332 ~a~~~lg~~~~~~g--~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKG--KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666666666777 8888888888877653 22355677788888889999999999987653 357788899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..|+...+. .|+ ...|..+..++...|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999874 454 566777888889999999999999998754 565 78889999999999999
Q ss_pred HHHHHHHhhCC-CCCC-HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 511 EEAEELVGQIP-GGPG-LS-------VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 511 ~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
++|.+.+++.. ..|+ .. .++..+..+...|++++|...++++++++|++...+..++.+|...|++++|.+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 99999998754 2222 11 122222233446999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 006364 582 LRKGMKS 588 (648)
Q Consensus 582 ~~~~m~~ 588 (648)
.+++..+
T Consensus 564 ~~e~A~~ 570 (615)
T TIGR00990 564 LFERAAE 570 (615)
T ss_pred HHHHHHH
Confidence 9988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=169.88 Aligned_cols=283 Identities=16% Similarity=0.111 Sum_probs=223.4
Q ss_pred CChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE---PSVCNCLITMYARFESMQDS 309 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 309 (648)
|++++|+..|.++... .| +..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999986 34 445788888899999999999999999887542222 24678889999999999999
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Q 006364 310 EKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK 385 (648)
Q Consensus 310 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~ 385 (648)
..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+ +..+....
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------------- 178 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------------- 178 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------------
Confidence 999999975 3557899999999999999999999998876 22111100
Q ss_pred hCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006364 386 VGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL 462 (648)
Q Consensus 386 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 462 (648)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|+++|+++.+.+..+...++.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 011234466667778888888888887653 2 45577888899999999999999999998753222246678
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRI--- 538 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~--- 538 (648)
.+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++. ..|+...++.++..+..
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 8889999999999999999998754 6776667889999999999999999998765 55888888888877664
Q ss_pred cCCHHHHHHHHHHHHh
Q 006364 539 HGNVEMGERIADALMK 554 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~ 554 (648)
.|+...+...++++.+
T Consensus 331 ~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 331 EGRAKESLLLLRDLVG 346 (389)
T ss_pred CccchhHHHHHHHHHH
Confidence 5588888888888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-15 Score=139.61 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=241.9
Q ss_pred cchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHh---HHHHHHHHhCCCCCcchHHHHH
Q 006364 25 IVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGL---QLHSLIVKFGLDSEVYVGNALI 99 (648)
Q Consensus 25 ~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~g~~~~~~~~~~li 99 (648)
+++=|.|+.-.++.. ++--+|+.|++.|+..+...-..|++.-+-.++-+-.. +-|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 456777777766666 88889999999998888777767766544332222222 2233333333 2223333
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHH
Q 006364 100 TMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGK 179 (648)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 179 (648)
+.|++.+ -+|+..+ +...+|..||.|+|+.. ..+.|.+++++-.....+.+..+||.+|.+-+-. ..+
T Consensus 191 ----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred ----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 3454444 3444444 56689999999999999 9999999999999988999999999999875433 348
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHH
Q 006364 180 QIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFI 259 (648)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~ 259 (648)
++..+|....+.||..|+|+++.+..+.|+++.|.+. |++++.+|++-|+.|...+|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a----------------------alqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA----------------------ALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH----------------------HHHHHHHHHHhCCCcchhhHH
Confidence 8999999999999999999999999999999988765 678899999999999999999
Q ss_pred HHHHHHhcCCchHH-HHHHHHHHHH----hcCCC----CchhHHHHHHHHHhcCChHHHHHHHhhcCCC-----------
Q 006364 260 GLIHAISIGNLVKE-GRMIHGLCIK----TNFLS----EPSVCNCLITMYARFESMQDSEKVFDELSCR----------- 319 (648)
Q Consensus 260 ~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------- 319 (648)
.+|.-+++.++..+ +..++.++.. ..++| |...+..-+..|.+..+.+-|.++-.-....
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 99999999888754 3334444332 23333 3445667788888888888888776555422
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
...-|..+....++....+.-+.+|+.|.. -.-|+..+...+++|....+ .++-..+++..++..|..
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~--~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN--RLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC--cchhHHHHHHHHHHhhhh
Confidence 113456677777888888888889998888 67888888888999888888 888888888888877644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-16 Score=166.23 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=237.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++++|..+++........+.. .+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999999888876433333 33444456667899999999999888764 445667788888888999999999988
Q ss_pred hhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 314 DELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 314 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
++... .+...|..+...+...|++++|...++.+....+.+...+..+ ..+...| ++++|...+..+.+....+
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g--~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKS--RLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcC--CHHHHHHHHHHHHhcCCCc
Confidence 88753 2456788888889999999999998887766333333333333 3366677 8888888888877765444
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCC-HHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYES----VMNQFKEMENKGVRPD-SITFL 462 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~ 462 (648)
+......+...+.+.|++++|...|+...+ .+...+..+...+...|++++ |+..|++..+. .|+ ...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 445555667778888999999988887654 256678888888888888885 78888888874 444 56777
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHHc
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSV-LQSLLGACRIH 539 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~ 539 (648)
.+...+...|++++|+..++...+. .|+ ...+..+..+|.+.|++++|...++++. ..|+... +..+..++...
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 8888888889999999998888744 666 6677778888888999999988888765 3455433 33456678888
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 006364 540 GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~ 560 (648)
|+.++|...++++++..|++.
T Consensus 366 G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc
Confidence 999999999999988888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=165.29 Aligned_cols=403 Identities=9% Similarity=0.002 Sum_probs=229.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 006364 128 AILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 128 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (648)
-.+......| +.++|++++.+..... ..+...+..+..++...|++++|..++...++.. +.+...+..+..++...
T Consensus 20 d~~~ia~~~g-~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 20 DWLQIALWAG-QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3344445555 5666666666555411 1223335555555555566666666655555442 22233344444445555
Q ss_pred CChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 006364 208 EVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 208 g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (648)
|++++|...++ +.... .|+...+..+..++...|+.+.|...++.+.+.. +
T Consensus 97 g~~~eA~~~l~--------------------------~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P 147 (765)
T PRK10049 97 GQYDEALVKAK--------------------------QLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-P 147 (765)
T ss_pred CCHHHHHHHHH--------------------------HHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 54444444433 22222 2322224455555566666666666666666543 2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh--
Q 006364 288 SEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV-- 365 (648)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~-- 365 (648)
.+...+..+..++...|..+.|.+.++.... ++..... +. . .....++...
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~-l~-------~------------------~~~~~~~r~~~~ 200 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD-LE-------A------------------DAAAELVRLSFM 200 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH-HH-------H------------------HHHHHHHHhhcc
Confidence 2333444455555555666666666555443 1110000 00 0 0000011111
Q ss_pred ---ccCch-hhHHHHHHHHHHHHHh-CCCCchh-HH-HH---HHHHHhhcCCHHHHHHHHhhcCCCC--hh--HHHHHHH
Q 006364 366 ---GAAED-ISLKHGQRCHSHIIKV-GLDSDPI-VG-SA---LLDMYGKRGSIFESQRVFNETQEKS--EF--AWTAIIS 431 (648)
Q Consensus 366 ---~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~ 431 (648)
...+. ...+.|...++.+.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ .. .--.+..
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 01110 0124455555555543 1122211 11 11 1223446688888888888877532 11 1122466
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC----------CCCC---hH
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRP---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH----------IEPS---PD 495 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~ 495 (648)
.|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7888888888888888877632111 123455566677888888998888888865411 1122 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
.+..+...+...|++++|+++++++. .+.+...+..+...+...|+.+.|++.+++++++.|+++..+..++.++...
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 45667788888899999999988865 3455678888888888999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhC
Q 006364 574 GDWEMVAILRKGMKSK 589 (648)
Q Consensus 574 g~~~~a~~~~~~m~~~ 589 (648)
|+|++|..+++++.+.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988877653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-15 Score=160.63 Aligned_cols=325 Identities=10% Similarity=-0.047 Sum_probs=242.1
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHH
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYA 332 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 332 (648)
.....++..+.+.|+++.|..++.........+ ......++.+....|+++.|...|+++... +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344556777788888888888888887765333 444455556667788888888888887532 4467777788888
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
..|++++|+..|++...-.+.+...+..+..++...| +.++|...+..+......+.. .+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 8888889988888888755556677777888888888 888888888877765543333 23223 3467788888888
Q ss_pred HHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH----HHHHHHHh
Q 006364 413 RVFNETQEK----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK----GRHLFDSM 484 (648)
Q Consensus 413 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m 484 (648)
..++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 888876543 23344555677888888888988888888742 2335666777788888888875 78888888
Q ss_pred HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 485 LKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 485 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.+ +.|+ ...+..+...+.+.|++++|...+++.. .+.+...+..+..++...|++++|...++++.+.+|.++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 64 4676 7788888888888889888888888765 2344566777788888888898888888888888888877
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.+..++.++...|++++|...+++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777788888888888888888876544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-14 Score=158.09 Aligned_cols=413 Identities=9% Similarity=0.004 Sum_probs=283.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 006364 90 SEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD-HVSFTSA 165 (648)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~l 165 (648)
-++....-.+......|+.++|++++.+... .+...+..+...+.+.| ++++|..+|++..+. .|+ ......+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3444555677788899999999999998764 34445888999999999 999999999998874 344 4556677
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHH
Q 006364 166 ASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKE 245 (648)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~ 245 (648)
...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++.+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------- 144 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------- 144 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------
Confidence 788899999999999999998873 34445 77888888888888877777655432
Q ss_pred HHHCCCCCCh-hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccH
Q 006364 246 MRLDGVCPND-VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISW 324 (648)
Q Consensus 246 m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (648)
..|+. ..+..+..++...+..+.|...++...+ .|+. ...+ ..+.+.......
T Consensus 145 -----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~--~~~l--------~~~~~~~~~r~~-------- 198 (765)
T PRK10049 145 -----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAE--KRDL--------EADAAAELVRLS-------- 198 (765)
T ss_pred -----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHH--HHHH--------HHHHHHHHHHhh--------
Confidence 23543 4445667777888999999888865543 2220 0000 000000000000
Q ss_pred HHHHHHHHhcCCc---HHHHHHHHHhHh--CCCCCHH-HHH----HHHHHhccCchhhHHHHHHHHHHHHHhCCC-Cchh
Q 006364 325 NALISGYAQNGLS---LAAVQAFFGVIK--ESKPNAY-TFG----SVLNAVGAAEDISLKHGQRCHSHIIKVGLD-SDPI 393 (648)
Q Consensus 325 ~~li~~~~~~g~~---~~A~~~~~~m~~--~~~p~~~-~~~----~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 393 (648)
+.......+++ ++|++.++.+.. ...|+.. .+. ..+.++...+ +.++|...|+.+.+.+.+ |+-
T Consensus 199 --~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 199 --FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred --cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHH-
Confidence 00001111122 556666666664 2222221 111 1123344556 777777777777766532 221
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------CC
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEKS-------EFAWTAIISALARHGDYESVMNQFKEMENKG-----------VR 455 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~ 455 (648)
....+...|...|++++|+..|+.+.+.+ ...+..+..++...|++++|+..++++.... -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22225667888888999988888765432 2345566778889999999999999888742 11
Q ss_pred CCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHH
Q 006364 456 PDS---ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG-LSVL 529 (648)
Q Consensus 456 p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~ 529 (648)
|+. ..+..+...+...|+.++|+++++++... .|+ ...+..+...+...|++++|++.+++.. ..|+ ...+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 332 23455667788999999999999999754 676 8889999999999999999999999876 3354 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
..++......|++++|+.+++.+++..|+++.+..
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 77888899999999999999999999999975543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-14 Score=145.32 Aligned_cols=565 Identities=12% Similarity=0.078 Sum_probs=377.0
Q ss_pred hhHHHHHhhcCC--CCCcchHHHHHHh---hccCC--hHHHHHHHHHhC--CCCCChhhHHHHHHHhhcccChhhHhHHH
Q 006364 10 FDKALCIFNNLN--NPDIVSWNTVLSG---FEKSD--DALSFALRMNLI--GVVFDAVTYSTALSFCLDHEGFLFGLQLH 80 (648)
Q Consensus 10 ~~~A~~~f~~~~--~p~~~~~~~ll~~---~~~~~--~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 80 (648)
+++|.+.|.... .|+-... .+-.+ |.+.+ .|+.+|...... ..+||...- +-..+.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~-LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA-LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH-HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 477777777654 3443322 22222 23333 788888885543 344555321 112345778888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHH---HhC---CChhHHHHHhccCC---CCCcchHHHHHHHHHcCCCChHHHHHHHHHHH
Q 006364 81 SLIVKFGLDSEVYVGNALITMY---SRW---GRLVEARRVFDEMP---NKDSVSWNAILSGYTQDGDYGVEAILALIEMM 151 (648)
Q Consensus 81 ~~~~~~g~~~~~~~~~~li~~~---~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~ 151 (648)
.+..... | ...++++... ... ..+..+..++...- ..|++..|.|-.-|.-.| ++..++.+...+.
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK-DYERVWHLAEHAI 297 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHH
Confidence 8887654 3 2333333211 112 23344444444332 257888888888888899 9999999998887
Q ss_pred HCCCC--CChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhH
Q 006364 152 RKGLR--LDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWT 229 (648)
Q Consensus 152 ~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 229 (648)
..... .-...|--+-+++-..|+++.|...|-...+..-...+..+-.|..+|.+.|+++.+...|+.+....+..+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 64311 1123466778888999999999999988776543333445567889999999999999999988763322222
Q ss_pred H--Hhc------C----ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH----HHhcCCCCchhH
Q 006364 230 T--MIS------M----NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC----IKTNFLSEPSVC 293 (648)
Q Consensus 230 ~--li~------g----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~ 293 (648)
+ ++. + ..+.|..++.+....- ..|...|..+-..+-. ++...+...+... ...+-.+.+.+.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2 222 1 3366666666655542 2355566555555544 3433335555443 445666888899
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC-------Cc-----c-cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR-------EI-----I-SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
|.+...+...|++..|...|+..... +. + +--.+...+-..++.+.|.+.|..+.+..+.-...|..
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence 99999999999999999999876422 21 1 12224455666778999999999988755444455555
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHh
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KSEFAWTAIISALAR 435 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 435 (648)
+....-..+ ...++...+....... ..++..++-+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|.+
T Consensus 536 l~~ma~~k~--~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 536 LGCMARDKN--NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred hhHHHHhcc--CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 542222234 6777777777766532 45666777777788888888888886654432 355555555554432
Q ss_pred ------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 436 ------------HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 436 ------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
.+..++|+++|.+.... -+-|...-+.+...++..|++.+|..+|.+..+.. .-...+|-.+..+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHH
Confidence 24578899999988875 24456777778888899999999999999997652 2235678889999
Q ss_pred HhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 006364 504 LGRVGRLEEAEELVGQIP----GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK------ 573 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 573 (648)
|..+|++..|+++|+... .+.+..+...|..++...|.+.+|.+....+....|.++..-..++-+..+.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 999999999999988644 4467888999999999999999999999999999999988777776665442
Q ss_pred -------------CCcHHHHHHHHHHhhCC
Q 006364 574 -------------GDWEMVAILRKGMKSKG 590 (648)
Q Consensus 574 -------------g~~~~a~~~~~~m~~~~ 590 (648)
+..+.|.++|+.|...+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777777776544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-14 Score=148.95 Aligned_cols=221 Identities=9% Similarity=0.016 Sum_probs=151.8
Q ss_pred cHHHHHHHHHhHh--CCCCCH-H----HHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 337 SLAAVQAFFGVIK--ESKPNA-Y----TFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 337 ~~~A~~~~~~m~~--~~~p~~-~----~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
.+.|+.-++.+.. +..|.. . ...-.+-++...+ +..++...++.+...+.+....+-.++.++|...++++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~--r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH--QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 3456666666555 222322 1 2223455666777 78888888888888777766777788888888888888
Q ss_pred HHHHHHhhcCCC---------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHH
Q 006364 410 ESQRVFNETQEK---------SEFAWTAIISALARHGDYESVMNQFKEMENKGV-------------RPDSI-TFLSVLT 466 (648)
Q Consensus 410 ~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~~~ll~ 466 (648)
+|..+|..+... +......|.-+|...+++++|..+++++.+.-. .||-. .+..+..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 888888876432 222346678888888888888888888876311 12222 2334455
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...|++.+|++.++.+... .|. ......+.+.+...|+..+|++.++... .+-+..+....+.+....+++.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 567788888888888888643 564 7777788888888888888888886644 3334555666777777788888
Q ss_pred HHHHHHHHHHhcCCCCchh
Q 006364 544 MGERIADALMKMEPAGSGS 562 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~ 562 (648)
+|+.+.+.+.+..|+++.+
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhCCCchhH
Confidence 8888888888888887644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-14 Score=153.08 Aligned_cols=422 Identities=11% Similarity=0.017 Sum_probs=257.1
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcC
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPN--KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD-HVSFTSAASACGH 171 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 171 (648)
+...-..|.+.|+++.|...|++... |+...|..+-.+|.+.| ++++|+..+....+. .|+ ...+..+-.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALG-DWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 33456678888999999999988654 67778888888999999 999999999988874 344 4567777888899
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCC
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGV 251 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~ 251 (648)
.|++++|..-+..+...+-..+... ..++.-+........+...++.-+. +..++..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~-------------------- 264 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFV-------------------- 264 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHH--------------------
Confidence 9999999887766554432111111 1111111111111223333322211 11111100
Q ss_pred CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc-hhHHHHHHH---HHhcCChHHHHHHHhhcCCC------Cc
Q 006364 252 CPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP-SVCNCLITM---YARFESMQDSEKVFDELSCR------EI 321 (648)
Q Consensus 252 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~------~~ 321 (648)
......+ .......-+....+ ..++. ..+..+... ....+++++|.+.|+..... ..
T Consensus 265 -------~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 265 -------GNYLQSF----RPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred -------HHHHHHc----cCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 0000000 00000000000000 00000 000000000 01234566666666655421 22
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
..|+.+...+...|++++|+..|++.....+.+..+|..+...+...| ++++|...+..+.+.. +.+..++..+...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456666666667777777777777766533334556666666666667 7777777777766653 3356677778888
Q ss_pred HhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
|...|++++|...|+...+ | +...|..+...+.+.|++++|+..|++.... .+.+...++.+...+...|++++|+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 8888888888888887654 2 5667777888888899999999999988764 2334577778888888899999999
Q ss_pred HHHHHhHHhcCCCCC-hH-------HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 479 HLFDSMLKDYHIEPS-PD-------HYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
..|+...+. .|+ .. .++.....+...|++++|.+++++.. ..| +...+..+...+...|++++|...
T Consensus 488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999887643 443 11 12222233444689999999888753 334 445678888899999999999999
Q ss_pred HHHHHhcCCCCch
Q 006364 549 ADALMKMEPAGSG 561 (648)
Q Consensus 549 ~~~~~~~~p~~~~ 561 (648)
++++.++.+....
T Consensus 565 ~e~A~~l~~~~~e 577 (615)
T TIGR00990 565 FERAAELARTEGE 577 (615)
T ss_pred HHHHHHHhccHHH
Confidence 9999888765433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-13 Score=140.08 Aligned_cols=502 Identities=12% Similarity=0.090 Sum_probs=349.3
Q ss_pred CCChhHHHHHhhcCC------CCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHh---hcccChh
Q 006364 7 SGQFDKALCIFNNLN------NPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFC---LDHEGFL 74 (648)
Q Consensus 7 ~g~~~~A~~~f~~~~------~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~---~~~~~~~ 74 (648)
.+++-.|+..|.... .||+..- +=.+|.+.+ .|+..|.+..+-.. -++.++..|--.- .....+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHH
Confidence 467778888888732 2444321 012233433 67777777776432 1222222221111 1223455
Q ss_pred hHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC------cchHHHHHHHHHcCCCChHHHHHHHH
Q 006364 75 FGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD------SVSWNAILSGYTQDGDYGVEAILALI 148 (648)
Q Consensus 75 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~~a~~~~~ 148 (648)
.+.+++....+.. ..++.+.+.|-+.|.-.|+++.++.+...+...+ ..+|--+-++|-..| ++++|...|.
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 6666666665543 5678889999999999999999999887776422 335667788899999 9999999998
Q ss_pred HHHHCCCCCChhhH--HHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC----ChHHHHHHHhcCCC
Q 006364 149 EMMRKGLRLDHVSF--TSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCE----VTGDANKVFRRMHD 222 (648)
Q Consensus 149 ~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~ 222 (648)
+-.+. .||.+++ .-+-..+...|+++.+...|+.+.+.. +.+..+.-.|-..|...+ ..+.|..+......
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 87663 4555444 456778889999999999999998864 445556666666676665 56778888887777
Q ss_pred CCchhhHHHhc-------CChhhHHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh---cCCC
Q 006364 223 RNVISWTTMIS-------MNREDAVSLFKE----MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT---NFLS 288 (648)
Q Consensus 223 ~~~~~~~~li~-------g~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~ 288 (648)
+.++..++.|. +++..++..|.. |...+-.+-....|.+-.-....|+++.|...+...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 66665555554 666666666654 345565577788888888889999999999998887765 1223
Q ss_pred Cch------hHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHH
Q 006364 289 EPS------VCNCLITMYARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYT 357 (648)
Q Consensus 289 ~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~ 357 (648)
|.. +--.+...+-..++.+.|.+.+..+....+ ..|--+.......+...+|..+++.... ...|+..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 331 222344555566789999999998875443 2333333222234678899999999888 44555555
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhh------------cCCHHHHHHHHhhcCCC---
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKV-GLDSDPIVGSALLDMYGK------------RGSIFESQRVFNETQEK--- 421 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~--- 421 (648)
+ +-..+.+.. .+..+..-|..+.+. ...+|+++.-+|.+.|.. .+..++|.++|.++.+.
T Consensus 569 l--~G~~~l~k~--~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 569 L--LGNLHLKKS--EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred H--HHHHHHhhh--hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4 433444444 566666655555542 223688887778776653 35678899999987753
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMV 501 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 501 (648)
|..+=|-+.-.++..|++.+|..+|.+.++... -+..+|..+..+|...|++..|++.|+...+++.-.-+.....+|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 667778888999999999999999999998743 3556788999999999999999999999999877666799999999
Q ss_pred HHHhhcCCHHHHHHHHhhCC
Q 006364 502 DMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~ 521 (648)
.++.++|++.+|.+......
T Consensus 724 ra~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-13 Score=143.54 Aligned_cols=434 Identities=10% Similarity=0.034 Sum_probs=255.6
Q ss_pred hcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHH---HHHHcCCCChHHHH
Q 006364 68 LDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAIL---SGYTQDGDYGVEAI 144 (648)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~~a~ 144 (648)
.+.|++..|...+....+......+.++ .++..+...|+.++|+..+++...|+...+..+. ..+...| ++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g-dyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK-RWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHH
Confidence 4666677777777766655321112233 6666666667777777777666655433333332 2444556 666777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCC
Q 006364 145 LALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRN 224 (648)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 224 (648)
++|+++.+.. |+. ..++..++..|...++.++|++.++.+...+
T Consensus 123 ely~kaL~~d--P~n----------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 123 ALWQSSLKKD--PTN----------------------------------PDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHhhC--CCC----------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 7766666543 221 2233344444555555555555555544321
Q ss_pred chhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 225 VISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE 304 (648)
Q Consensus 225 ~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 304 (648)
|+...+..++..+...++..+|.+.++++.+.. +.+...+..++....+.|
T Consensus 167 ----------------------------p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 167 ----------------------------PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred ----------------------------cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 222222222222222333333555555555543 334555556666666666
Q ss_pred ChHHHHHHHhhcCCC-CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 006364 305 SMQDSEKVFDELSCR-EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHI 383 (648)
Q Consensus 305 ~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~ 383 (648)
-...|.++...-+.- +...+.-+ +.+.|.+..+...........-|..+=.++ .....++...
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~~~r~~~~d~al--------a~~~~l~~~~ 281 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSETERFDIADKAL--------ADYQNLLTRW 281 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccchhhHHHHHHHH--------HHHHHHHhhc
Confidence 666666666554311 00111100 011122221111100000011121111111 1111111111
Q ss_pred HHhCCCCchh----HHHHHHHHHhhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--
Q 006364 384 IKVGLDSDPI----VGSALLDMYGKRGSIFESQRVFNETQEK----SEFAWTAIISALARHGDYESVMNQFKEMENKG-- 453 (648)
Q Consensus 384 ~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 453 (648)
. ..++... ...-.+-++.+.|++.++++.|+.+..+ ...+--.+.++|...+++++|..+|++.....
T Consensus 282 ~--~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 282 G--KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred c--CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 1121111 1122445677889999999999999854 23455678889999999999999999986642
Q ss_pred ---CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC------------CCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 454 ---VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH------------IEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 454 ---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
..++......|.-++...+++++|..+++.+.+... ..|| ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122334457888899999999999999999976311 2234 566677788889999999999999
Q ss_pred hhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 518 GQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 518 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+++. .+-|...+..+...+...|....|++.++.+..++|++..+....+.++...|+|++|..+.+.+
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9876 44678888889999999999999999999999999999999999999999999999998877554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-12 Score=121.07 Aligned_cols=434 Identities=13% Similarity=0.095 Sum_probs=262.3
Q ss_pred hhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHh--CCChhH-HHHHhccCCC---CCcchHHHHH
Q 006364 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSR--WGRLVE-ARRVFDEMPN---KDSVSWNAIL 130 (648)
Q Consensus 57 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~~~~---~~~~~~~~li 130 (648)
+.|=+.|++. ...|.+..+.-+|+.|...|++.+..+--.|+..-+- ..++.- -++-|-.|.+ ....+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 3355666654 4567889999999999999988888877777654332 233222 2334444543 344555
Q ss_pred HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 006364 131 SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVT 210 (648)
Q Consensus 131 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (648)
+.| .. |- ++.+.. .-+..||.++|.++++-...+.|.+++.+........+..++|.+|.+-.-
T Consensus 191 ----K~G-~v--Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 ----KSG-AV--AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ----ccc-cH--HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 344 32 22 444332 235678888999888888888888888888777777777777777764322
Q ss_pred HHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHH----HHHHHHHHHhcC
Q 006364 211 GDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEG----RMIHGLCIKTNF 286 (648)
Q Consensus 211 ~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~ 286 (648)
....+++.+|....+.||..|||+++++.++.|+++.| .+++.+|.+.|+
T Consensus 255 --------------------------~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 255 --------------------------SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV 308 (625)
T ss_pred --------------------------hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Confidence 23367888999999999999999999999999988765 678899999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHhhcC--------C----CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhC---
Q 006364 287 LSEPSVCNCLITMYARFESMQD-SEKVFDELS--------C----REIISWNALISGYAQNGLSLAAVQAFFGVIKE--- 350 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~--------~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 350 (648)
.|...+|..+|..+++-++..+ |..++..+. + .|...+..-+..|....+.+-|.++-.-...|
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 9999999999999988888755 333333321 0 12233444455555555555554444333221
Q ss_pred --CCCC---HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhH
Q 006364 351 --SKPN---AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFA 425 (648)
Q Consensus 351 --~~p~---~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 425 (648)
+.|+ .+-|..+..+.++.. ..+.....|..++..-+-|+..+...++.+..-.|.++-..++|..+..-+
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~e--s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g--- 463 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQME--SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG--- 463 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh---
Confidence 1222 223444555555555 666666666666665556666666666666666666666666555444211
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcccCcHHHHHH-HHHHhHHhcCCCCChHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSI---TFLSVLTVCGRNGMIHKGRH-LFDSMLKDYHIEPSPDHYSCMV 501 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~-~~~~m~~~~~~~p~~~~~~~l~ 501 (648)
..-+.+--.+++..|......|+.. -+..+..-|.. ++.++.+ .-.+|. ...-.....++..
T Consensus 464 ---------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia 529 (625)
T KOG4422|consen 464 ---------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQR---AQDWPATSLNCIA 529 (625)
T ss_pred ---------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHH---hccCChhHHHHHH
Confidence 1111122233333343333334322 22222222211 1222211 122232 2234456677788
Q ss_pred HHHhhcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 502 DMLGRVGRLEEAEELVGQIP-------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
-.+.|.|+.++|.+++.... ..|.....--|+.+-...++...|..+++-+.+.+
T Consensus 530 ~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 530 ILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 88889999999988876552 22444444455566666677777777777765543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-13 Score=127.02 Aligned_cols=474 Identities=11% Similarity=0.028 Sum_probs=291.9
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHH-HHHHHHHhCCChhHHHHHhcc----CCCC----CcchHHHHHHH
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGN-ALITMYSRWGRLVEARRVFDE----MPNK----DSVSWNAILSG 132 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~----~~~~----~~~~~~~li~~ 132 (648)
.|.+-|.......+|+..++.+++....|+.-... .+-+.+.+...+..|++++.. ++.- .+...|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 33444555667778888888888877777654333 344567777888888887643 3321 12334555556
Q ss_pred HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchH--------HHHHHHH
Q 006364 133 YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVG--------NVLMSTY 204 (648)
Q Consensus 133 ~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~ 204 (648)
|.+.| .+++|+..|+...+. .||..+--.|+-++...|+-+..++.|..|+.....+|..-| ..|+.--
T Consensus 286 fiq~g-qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAG-QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecc-cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 77888 888888888887764 477776666666666778888888888888765544443321 1122221
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIK 283 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 283 (648)
.+...+..-++--+. +.++++-.--++...-+.||-. .|..-+..+-.....+.|..+ ++
T Consensus 363 i~nd~lk~~ek~~ka---------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--ei-- 423 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKA---------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--EI-- 423 (840)
T ss_pred HhhHHHHHHHHhhhh---------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--hh--
Confidence 221111111111001 1111111111111111122211 010111111001111111000 00
Q ss_pred hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHH-----HHHHHHhcC-CcHHHHHHHHHhHhCCCCCHHH
Q 006364 284 TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNA-----LISGYAQNG-LSLAAVQAFFGVIKESKPNAYT 357 (648)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----li~~~~~~g-~~~~A~~~~~~m~~~~~p~~~~ 357 (648)
.-..-|.+.|+++.|.++++-....|..+-++ -..-|.+.| ++..|...-+......+-+...
T Consensus 424 -----------~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a 492 (840)
T KOG2003|consen 424 -----------NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAA 492 (840)
T ss_pred -----------hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHH
Confidence 11123566777777777776665544322221 111222222 4455544444433322223333
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ---EKSEFAWTAIISALA 434 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 434 (648)
...--+.....| +++.+...+.+.....-......|| +.-.+.+.|++++|+++|-.+. ..++...-.+.+.|-
T Consensus 493 ~~nkgn~~f~ng--d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 493 LTNKGNIAFANG--DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred hhcCCceeeecC--cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 322223333445 7778877777776654443344444 3345678899999999987654 457777777888899
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 513 (648)
...+..+|++++-+.... ++.|+....-|...|-+.|+-..|.+++-.- |..-| +.++...|..-|....-+++|
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHH
Confidence 999999999999887764 5556788888999999999999999987544 34455 589999999999999999999
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 514 EELVGQIP-GGPGLSVLQSLLGAC-RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 514 ~~~~~~~~-~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
...|++.. .+|+..-|..++..| ++.||++.|...|+...+..|.+......|..+....|.
T Consensus 646 i~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999865 789999999998765 667999999999999999999999999999999888874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-12 Score=132.73 Aligned_cols=511 Identities=11% Similarity=0.027 Sum_probs=295.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC
Q 006364 43 SFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD 122 (648)
Q Consensus 43 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 122 (648)
.++-.+...|+.|+.+||.+++..||..|+++.|- +|..|.-...+.+..+++.++.+..+.++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778889999999999999999999999999999 9999998888888899999999999999998876 688
Q ss_pred cchHHHHHHHHHcCCCChHHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhcCCC-Ch------hHHHHHHHHHHH
Q 006364 123 SVSWNAILSGYTQDGDYGVEAILALIE-MM-------RKGLRLDHVSFTSAASACGHEK-NL------ELGKQIHGVSIK 187 (648)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~~a~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~ 187 (648)
+.+|+.|+.+|.+.| +... ++..++ |. ..|+.--..-|-..+++|-..- +. .--+.+++..++
T Consensus 83 aDtyt~Ll~ayr~hG-Dli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHG-DLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhcc-chHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999 6643 333333 22 1233222222222222222111 00 111233344444
Q ss_pred hc--CCCCcchHHHH--HHHHHh-CCChHHHHHHHhcCCC-CCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChh
Q 006364 188 MG--YGTHVSVGNVL--MSTYSK-CEVTGDANKVFRRMHD-RNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDV 256 (648)
Q Consensus 188 ~~--~~~~~~~~~~l--i~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~ 256 (648)
.+ .+......... ++-... ...+++-........+ ++..++.+.+. |+.+.|..++.+|++.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 43 11111111111 111111 1233444444444444 77777777766 99999999999999999998988
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCC
Q 006364 257 TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGL 336 (648)
Q Consensus 257 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (648)
-|..++-+ .++...++.+..-|...|+.|+..|+..-+..+.+.|....+.+.. + ....+++-+..-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q-~~hg~tAavrsaa~rg- 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----Q-LAHGFTAAVRSAACRG- 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----c-hhhhhhHHHHHHHhcc-
Confidence 88888766 8888888999999999999999999988777777755533322221 1 1111222222222222
Q ss_pred cHHHHHHHHHh------------Hh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC---CchhHHHHHHH
Q 006364 337 SLAAVQAFFGV------------IK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD---SDPIVGSALLD 400 (648)
Q Consensus 337 ~~~A~~~~~~m------------~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~ 400 (648)
..|.+.++.- .- +..-....|.......- .| .-+...++-..+...-.. .++..+..
T Consensus 312 -~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qg--k~e~veqlvg~l~npt~r~s~~~V~a~~~--- 384 (1088)
T KOG4318|consen 312 -LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QG--KGEEVEQLVGQLLNPTLRDSGQNVDAFGA--- 384 (1088)
T ss_pred -cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cC--CCchHHHHHhhhcCCccccCcchHHHHHH---
Confidence 2222222211 11 22222222222222111 23 333333333333211110 11112222
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHh---CCChHHHHHHHHHH------------HHC----CCCC----
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEF-AWTAIISALAR---HGDYESVMNQFKEM------------ENK----GVRP---- 456 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~~----g~~p---- 456 (648)
.+.+.|.+...+... .++ .-.+... .....+..++.... ... -..|
T Consensus 385 ---------~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 385 ---------LLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred ---------HHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 233344444433211 111 1111111 11111222221111 100 0111
Q ss_pred ---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-----CCHHH
Q 006364 457 ---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-----PGLSV 528 (648)
Q Consensus 457 ---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 528 (648)
=...-+.++..|...-+..+++..-+.. +.+-+ ...|..||+.++.....++|..+.++...+ -+..-
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 0112234455555555555555443333 22122 267999999999999999999999887622 34455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKM---EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
+..+.+...+++....+..+.+.+.+. .|.-..+..-+.+..+..|+.+...++.+-+...|+..
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 677888888888888888888877753 24445667778888888999999999999888888876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=140.78 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEM 449 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (648)
+.+.+...+..+...+.. ++..+..++.. ...+++++|.+++....+ ++...+..++..+.+.++++++..++++.
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555544322 44455556665 577888888888776543 46677888888899999999999999998
Q ss_pred HHCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC
Q 006364 450 ENKG-VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPG 525 (648)
Q Consensus 450 ~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 525 (648)
.... .+++...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.++++... .+.+
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7632 3456677888888889999999999999999865 786 8888899999999999999888776654 2456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..|..+..++...|+.+.|...++++.+.+|+|+.....++.++...|+.++|.+++.+..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67789999999999999999999999999999999999999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-12 Score=129.69 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChh
Q 006364 22 NPDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFL 74 (648)
Q Consensus 22 ~p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 74 (648)
.||.+||..+|..|+..| ++-.+|.-|.-...+.+...|+.++.+....++.+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhccccccccc
Confidence 689999999999999888 44446766655444444444444444444444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-11 Score=119.70 Aligned_cols=528 Identities=11% Similarity=0.066 Sum_probs=286.4
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|..++.+.++... .+...|.+|-..+-..|+.+++...+-.+--. .+.|...|..+-....+.|.++.|.-.|.+..
T Consensus 157 eA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 67777777766543 25666777777777777777666654433322 24455667777777777777777777777666
Q ss_pred CCCcchHHHH---HHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHH----HHHHhcCCCChhHHHHHHHHHHHh-cCC
Q 006364 120 NKDSVSWNAI---LSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS----AASACGHEKNLELGKQIHGVSIKM-GYG 191 (648)
Q Consensus 120 ~~~~~~~~~l---i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 191 (648)
+.++.-|-.+ ...|-+.| +...|...|.++.......|..-+.. +++.+...++-+.|.+.++..... +-.
T Consensus 235 ~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 5443334333 34556667 77777777777776543222222222 334455555556666666665552 234
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhcCCC----CCch----------------------hhH-----HHhc----CCh
Q 006364 192 THVSVGNVLMSTYSKCEVTGDANKVFRRMHD----RNVI----------------------SWT-----TMIS----MNR 236 (648)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~----------------------~~~-----~li~----g~~ 236 (648)
.+...++.++..|.+...++.|......+.. +|.. +|+ .++. ...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 4556667777777777777777666544432 1111 111 1111 111
Q ss_pred hhHHHHHHHHHHCCC--CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHh
Q 006364 237 EDAVSLFKEMRLDGV--CPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
+..-.+........+ .-+...|.-+..++...|.+..|..++..+.....--+..+|-.+..+|...|..+.|.+.|.
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 112222222233332 223445566666666666666666666666655444445566666666666666666666666
Q ss_pred hcCCCCcc---cHHHHHHHHHhcCCcHHHHHHHHHhHh---------CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 006364 315 ELSCREII---SWNALISGYAQNGLSLAAVQAFFGVIK---------ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSH 382 (648)
Q Consensus 315 ~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~ 382 (648)
....-++. .--+|-..+.+.|+.++|++.+..+.. ...|+..........+.+.| +.++-..+-..
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g--k~E~fi~t~~~ 551 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG--KREEFINTAST 551 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 65433222 223344455666666666666666432 22344444444444455555 55554444444
Q ss_pred HHHhCCC-----C-----------------chhHHHHHHHHHhhcCCHHHHHHHHhhc--------CCCChh----HHHH
Q 006364 383 IIKVGLD-----S-----------------DPIVGSALLDMYGKRGSIFESQRVFNET--------QEKSEF----AWTA 428 (648)
Q Consensus 383 ~~~~~~~-----~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~ 428 (648)
|+..... | .......++.+-.+.++.....+-...- ..-... .+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 4431110 0 0000011111111111111110000000 000111 2344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKGV--RPDS-I-TF-LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHYSCM 500 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 500 (648)
++.++++.+++++|+.+...+.+... .++. . .+ ...+.++...+++..|..+++.|...++...+ ...|++.
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788999999999999888876432 2222 1 22 34455667889999999999999876554433 5567766
Q ss_pred HHHHhhcCCHHHHHHHHhh-CCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 501 VDMLGRVGRLEEAEELVGQ-IPGGPGLSVLQSLL--GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
...+.+.|+----.+++.. +..+|+......++ ......+.+.-|.+.+-++...+|++|-+-.+++-++..
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6666666654444444443 33333332222222 334566778889999999999999999887777776653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-12 Score=126.98 Aligned_cols=328 Identities=13% Similarity=0.134 Sum_probs=216.1
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhc---CCCCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 269 NLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDEL---SCREIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
|+++.|..++.++++.. +.....|.+|...|-..|+.+++...+-.. ...|...|-.+.....+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666653 344455666666666666666665544332 23344566666666666666666666666
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH----HHHHHhhcCCHHHHHHHHhhcCC-
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA----LLDMYGKRGSIFESQRVFNETQE- 420 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~- 420 (648)
+..+-.+++...+---...|-+.| +...|..-+.++.....+.|..-+.. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 666644555555555555566666 66666666666665443333222222 23444455556777777665443
Q ss_pred -C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHhcc
Q 006364 421 -K---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITF--------------------------LSVLTVCGR 470 (648)
Q Consensus 421 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~a~~~ 470 (648)
. +...++.++..|.+..+++.|......+......+|..-| ..+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 4456777888888888888888887777662222222111 112223344
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIPGG---PGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 545 (648)
....+....+..-.... .+.|+ ...|.-+.++|...|++.+|+.++..+... -+..+|-.+...+...|.++.|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 44444444444444333 54454 888999999999999999999999988744 3466899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 600 (648)
.+.|++++...|++..+-..|+.+|.+.|+.++|.+.++.|-.-+-+..++++|-
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999988764444444666653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-13 Score=130.62 Aligned_cols=273 Identities=12% Similarity=0.106 Sum_probs=221.0
Q ss_pred ChHHHHHHHhhcCCC--Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CC-CCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 305 SMQDSEKVFDELSCR--EI-ISWNALISGYAQNGLSLAAVQAFFGVIK--ES-KPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 305 ~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
+..+|...|..++.. |+ .....+..+|...+++++|.++|+.+.+ .. .-+...|++.|..+ .-+.+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL------q~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL------QDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH------HhhHHHH
Confidence 567788888886532 33 4445567889999999999999999887 22 35678888888765 2233333
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
.+..-.-.--+-.+.+|.++.++|.-+++.+.|++.|+...+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 3433332233567899999999999999999999999987753 567899999999999999999999998864 44
Q ss_pred CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHH
Q 006364 456 PDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQS 531 (648)
Q Consensus 456 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 531 (648)
|.. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.++|+++++++. .+.|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 443 567778889999999999999999986 67897 7788888999999999999999999875 3445555556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
-+..+...+++++|.+.+|++.++-|++..+|..++.+|.+.|+.+.|..-+.-+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 667778889999999999999999999999999999999999999999998877654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-12 Score=117.81 Aligned_cols=360 Identities=10% Similarity=0.075 Sum_probs=241.9
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-CChhhHHHHHHHHHHCCCCCChhhH--HHHHHHH
Q 006364 189 GYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNREDAVSLFKEMRLDGVCPNDVTF--IGLIHAI 265 (648)
Q Consensus 189 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~ 265 (648)
+...|...+-..-..+-+.|....|+..|......-+..|.+.+. ++.-.-++....... |...|..-+ -.+..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-cCcccchHHHHHHHHHHH
Confidence 334454444444445667788888999888877766667776655 222112222222211 111111111 1233344
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 266 SIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
......+.+.+-.......|++.+...-+....+.-...++|.|+.+|+++.+.|+.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR---------------------- 295 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR---------------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----------------------
Confidence 4455666666666666666666665555555555555566666666666665443311
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---C
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---S 422 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 422 (648)
--|..+|+.++-.-.... ....+..-.-.--+-.+.++..+.+.|+-.++.++|...|+...+- .
T Consensus 296 ------l~dmdlySN~LYv~~~~s------kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~ 363 (559)
T KOG1155|consen 296 ------LDDMDLYSNVLYVKNDKS------KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY 363 (559)
T ss_pred ------chhHHHHhHHHHHHhhhH------HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence 123344444443221111 1111111111111234456677888888899999999999987653 4
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...|+.|..-|....+...|++.|++.++- .+-|-..|-.|.++|.-.+...=|+-+|++.. ...|+ ...|.+|.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALG 439 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHH
Confidence 668999999999999999999999999984 34577899999999999999999999999986 56886 99999999
Q ss_pred HHHhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhHHHHHHHHHh
Q 006364 502 DMLGRVGRLEEAEELVGQIPGG--PGLSVLQSLLGACRIHGNVEMGERIADALMKM-------EPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~ 572 (648)
++|.+.++.++|.+.|.+...- .+...+..|...+.+.++.++|.+.+++.++. +|....+...|++-+.+
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 9999999999999999987633 44588999999999999999999999998872 34444566678888999
Q ss_pred cCCcHHHHHHHHHHh
Q 006364 573 KGDWEMVAILRKGMK 587 (648)
Q Consensus 573 ~g~~~~a~~~~~~m~ 587 (648)
.++|++|..+-....
T Consensus 520 ~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 520 MKDFDEASYYATLVL 534 (559)
T ss_pred hcchHHHHHHHHHHh
Confidence 999999988766544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-09 Score=106.43 Aligned_cols=460 Identities=13% Similarity=0.103 Sum_probs=302.0
Q ss_pred HHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHH----HHHCCCCCChhhHHHHHHHhc
Q 006364 98 LITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIE----MMRKGLRLDHVSFTSAASACG 170 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~ 170 (648)
|.-+|++..-++.|.+++....+ .+...|-+--..=-.+| +.+....+..+ +...|+..+..-|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 33445566667777777665544 35666666555555666 77666666654 345677777777777777777
Q ss_pred CCCChhHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhhHHHhc-----CChhhHH
Q 006364 171 HEKNLELGKQIHGVSIKMGYGT--HVSVGNVLMSTYSKCEVTGDANKVFRRMHD---RNVISWTTMIS-----MNREDAV 240 (648)
Q Consensus 171 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~-----g~~~~a~ 240 (648)
..|..-.+..+....+..|++- -..+++.-...|.+.+.++-|+.+|....+ .+...|..... |..++-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 7777777777777777666543 235667777777777777777777765544 22233333222 5555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 006364 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE 320 (648)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 320 (648)
.+|++.... ++-....|....+..-..|++..|+.++....+.. +.+.
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse------------------------------ 618 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE------------------------------ 618 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH------------------------------
Confidence 555554443 11122222222223333344444444444444332 1133
Q ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 321 IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
..|-+-+..-..+.+++.|..+|.+... ..|+...|.--++.--..+ ..++|.++++...+. ++.-...|-.+..
T Consensus 619 -eiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er~ld--~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 619 -EIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLERYLD--NVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred -HHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHHHhh--hHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 3444444555555555555555555443 2222222222222222233 556666666555543 3444556777777
Q ss_pred HHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
.+-..++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-+|..++++..-.+ +-|...|...++.=.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 88888888888888887664 3 45678888888788888899999998887653 33567788888888899999999
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
..+..+..++ -|+ ...|.--|.+..+.++-....+.+++-. .|+.+..++...+.....++.|..-|+++...+
T Consensus 773 ~~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 773 ELLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9888888766 454 7778888888888888666666666654 566777788888999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEc
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVG 603 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 603 (648)
|++..+|..+-..+...|.-++-.+++++... ..|..|..|..+.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 99999999999999999998899999987764 4577788887765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-08 Score=100.41 Aligned_cols=418 Identities=11% Similarity=0.076 Sum_probs=319.0
Q ss_pred HHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhhHHHhc-----CChhh
Q 006364 167 SACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD---RNVISWTTMIS-----MNRED 238 (648)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~-----g~~~~ 238 (648)
++.....+.+.|..++...++.- +.+. -|.-+|++..-++.|.++++...+ .+...|-+.-. |+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44455666667888888777642 2222 344556677778888888877655 34445544332 77777
Q ss_pred HHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHH
Q 006364 239 AVSLFKE----MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE--PSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 239 a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
..+++++ +...|+..+...|..=..+|-..|..-....+...++..|+... ..+|..-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 7776654 56679999999998888899999999999999999998887654 45677788889999999999999
Q ss_pred HhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 313 FDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 313 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
|....+- +...|...+..=-..|..++...+|++.....+-....|-......-..| +...+..++..+.+....
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag--dv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG--DVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC--CcHHHHHHHHHHHHhCCC
Confidence 8877643 44677777777777888899999999988877777777777777777778 999999999998887644
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
+..++-+-+..-.....++.|..+|.+... +....|.--+...-..++.++|++++++..+. -|+ ...|..+.+
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 777888888888999999999999987764 56777877777777788999999999988874 566 456777778
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...++++.|...|..=. ..-|+ +..|-.|...=.+.|.+-.|..++++.. .+.+...|...+..-.++|+.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 8888999999998887654 33676 7788888888899999999999998765 4567888999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------------------------chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 544 MGERIADALMKMEPAG------------------------------SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
.|+.+..++++-.|.+ +.....++..+....+++.|.+-|.+... +.+
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCC
Confidence 9999998888766654 44455666666666777777777765443 234
Q ss_pred CCceeE
Q 006364 594 EVGFSW 599 (648)
Q Consensus 594 ~~~~s~ 599 (648)
+.|-.|
T Consensus 849 d~GD~w 854 (913)
T KOG0495|consen 849 DNGDAW 854 (913)
T ss_pred ccchHH
Confidence 444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-11 Score=111.67 Aligned_cols=208 Identities=13% Similarity=0.184 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+.-.+..-++..++....++. .|--+..+|....+.++....|+...+ .|..+|-.-...+.-.+++++|+.=|++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777765543332 256666778888888888888887654 3666777777777777889999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-
Q 006364 449 MENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP- 524 (648)
Q Consensus 449 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 524 (648)
.++ +.|+ ...|.-+..+.-+.+.++++...|++..++ -|+ ++.|+.....+...+++++|.+.++... ..|
T Consensus 420 ai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 420 AIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred Hhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 887 4554 456666666667888999999999999876 455 7888999999999999999999998754 223
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 525 --------GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 525 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+.+..+++-.-++ +|+..|+.+.+++.+++|....+|..|+.+-.+.|+.++|+++|++-
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23344444444444 89999999999999999999999999999999999999999999864
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-11 Score=111.62 Aligned_cols=414 Identities=11% Similarity=0.064 Sum_probs=262.6
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCCCcchH-HHHHHHHHhCCChHHHHHHHhcCCC--CC--chhhHHH--------hc-
Q 006364 168 ACGHEKNLELGKQIHGVSIKMGYGTHVSVG-NVLMSTYSKCEVTGDANKVFRRMHD--RN--VISWTTM--------IS- 233 (648)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l--------i~- 233 (648)
-|.......+|...++.+++..+-|+.-.. ..+-+.+.+..++.+|++.++.... |. ..+---+ +.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 344445556666777777766655554332 2234556677777777777654432 11 1111111 11
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC------------chhHHHHH----
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE------------PSVCNCLI---- 297 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~li---- 297 (648)
|.++.|+..|+..... .|+..+-..++-++...|+.++..+.|..++..-..+| ....+--|
T Consensus 290 gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 7888888888776553 57776666666666667888888888888776432222 22222111
Q ss_pred -HHHHhcC--ChHHHH----HHHhhcCCCCcc---cHH----------H--------HHHHHHhcCCcHHHHHHHHHhHh
Q 006364 298 -TMYARFE--SMQDSE----KVFDELSCREII---SWN----------A--------LISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 298 -~~~~~~g--~~~~a~----~~~~~~~~~~~~---~~~----------~--------li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
.-.-+.. +.++++ ++..-...++.. -|. . -...+.++|+++.|+++++-..+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 1111111 112221 111111222210 111 0 11347889999999999988876
Q ss_pred -CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHH
Q 006364 350 -ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTA 428 (648)
Q Consensus 350 -~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 428 (648)
..+.-+..-+.+-..+.-.|..++..+.+.-+...... .-++...+.-.+.-...|++++|.+.+.+....|...-.+
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 33332322222222222222226666666655544321 1122222222233446799999999999999887665544
Q ss_pred HHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 429 IIS---ALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 429 li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|.+ .+-..|+.++|++.|-++..- +..+.....-+...|....+...|++++.+.. .+.|+ +...+.|.++|
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHh
Confidence 443 467789999999999988763 34556677778888888999999999998774 55675 89999999999
Q ss_pred hhcCCHHHHHHHHh-hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVG-QIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
-+.|+-.+|.+..- ... .+.+..+...|...|....-.+.+...++++.-+.|....--..++.++.+.|+++.|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999998754 333 4567777777777888888889999999999989998777677788889999999999999
Q ss_pred HHHHhh
Q 006364 583 RKGMKS 588 (648)
Q Consensus 583 ~~~m~~ 588 (648)
++....
T Consensus 683 yk~~hr 688 (840)
T KOG2003|consen 683 YKDIHR 688 (840)
T ss_pred HHHHHH
Confidence 987653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-09 Score=98.06 Aligned_cols=524 Identities=11% Similarity=0.095 Sum_probs=315.5
Q ss_pred ccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC--CCc-chHHHHHHHHHcCCCChHHHHHH
Q 006364 70 HEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN--KDS-VSWNAILSGYTQDGDYGVEAILA 146 (648)
Q Consensus 70 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~~a~~~ 146 (648)
++++..|.++|++...-. ..+...|-..+.+=.++..+..|+.+|++... |.+ ..|--.+-.=-..| +...|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg-Ni~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG-NIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 444555666666555433 34444555555555556666666666654332 211 12222222222334 55555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCch
Q 006364 147 LIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVI 226 (648)
Q Consensus 147 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 226 (648)
|..-.. ..|+...|.+.|+.=.+-+.++.|..+++..+-. .|++..|-.....=-++|.+..|..+|+.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer------- 232 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER------- 232 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence 555443 3455555555555555555555555555554432 35555555555555555555555555432
Q ss_pred hhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcC
Q 006364 227 SWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE--PSVCNCLITMYARFE 304 (648)
Q Consensus 227 ~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 304 (648)
|++.|.. -.-+...|++....=.+...++.|.-++...++.- +.+ ...|..+...--+.|
T Consensus 233 ------------Aie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 233 ------------AIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred ------------HHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhc
Confidence 2222211 00112233333333355677888888888877752 222 345555555555566
Q ss_pred ChHHHHHH--------HhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHH-------HHHHHHHHh-
Q 006364 305 SMQDSEKV--------FDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAY-------TFGSVLNAV- 365 (648)
Q Consensus 305 ~~~~a~~~--------~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~-------~~~~ll~a~- 365 (648)
+....... ++.+... |-.+|--.+..-...|+.+...++|++...+++|-.. .|.-+=-+|
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 65444332 2233333 4467777777778889999999999999998888432 111111111
Q ss_pred --ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh----hcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCC
Q 006364 366 --GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG----KRGSIFESQRVFNETQ--EKSEFAWTAIISALARHG 437 (648)
Q Consensus 366 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 437 (648)
.... +.+.+.+++...++ -++....++.-+=-+|+ ++.++..|.+++.... .|...+|-..|..=.+.+
T Consensus 375 eEle~e--d~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAE--DVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhh--hHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 2244 88889999998888 35556677776666665 5789999999998654 467778888888889999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
+++....+|++.++-+ +-|..+|.....-=...|+.+.|..+|.-+++...+......|...|+-=...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999853 334577777776667889999999999999876444444677888888888999999999999
Q ss_pred hhCC-CCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhc----CCCCc--hhHHHHHHHHHhcC
Q 006364 518 GQIP-GGPGLSVLQSLLGACR-----IHG-----------NVEMGERIADALMKM----EPAGS--GSYVLMSNLYAEKG 574 (648)
Q Consensus 518 ~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g 574 (648)
++.. ..+...+|-++...-. ..+ +...|..+|+++... +|... ......-+.-...|
T Consensus 531 erlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 531 ERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred HHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 9876 3355557877765433 334 677888999988753 23221 12333334445567
Q ss_pred CcHHHHHHHHHHhh-----CCCccCCcee-EEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHH
Q 006364 575 DWEMVAILRKGMKS-----KGVRKEVGFS-WADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGS 633 (648)
Q Consensus 575 ~~~~a~~~~~~m~~-----~~~~~~~~~s-~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~ 633 (648)
.-.+...+-++|.+ +.+..+.|.+ |=+. +-.+...|.+.+.+-.|.+.-..+..
T Consensus 611 ~~~d~~~V~s~mPk~vKKrr~~~~edG~~~~EEy-----~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 611 TEGDVERVQSKMPKKVKKRRKIQREDGDTEYEEY-----FDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred chhhHHHHHHhccHHHHhhhhhhcccCchhHHHH-----HHhcCccccccCcchHHHHHHHHHHH
Confidence 77777777776643 2233444432 2111 11223334455555556655555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=112.38 Aligned_cols=254 Identities=12% Similarity=0.037 Sum_probs=192.9
Q ss_pred HHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 327 LISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
-..-+...+++.+..+++....+..+++...+..-|.++...| +...-..+-..+++. .+..+.+|-++.-.|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~--~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELG--KSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc--ccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344455566666666666666645555555555555555555 333333333344432 4567788888888899999
Q ss_pred CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+..+|++.|.+...- -...|-.....|+-.|..++|+..|...-+. ++-....+..+..-|.+.+..+.|.++|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999876543 3568999999999999999999999887663 222223344555668889999999999998
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGP-GLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.. ++.|+ +...+-+.-..-..+.+.+|...|+... .++ ...+++.|+.+|++.+.+++|...+++.+
T Consensus 406 A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 406 AL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 85 77886 7777777777778899999999987654 112 45678999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 554 KMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+.|.++.+|..++-+|...|+++.|++.+.+..
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999998543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-11 Score=120.04 Aligned_cols=246 Identities=11% Similarity=0.071 Sum_probs=194.7
Q ss_pred CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCCHHHHHH
Q 006364 336 LSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGL--DSDPIVGSALLDMYGKRGSIFESQR 413 (648)
Q Consensus 336 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 413 (648)
+..+|+..|......+.-.......+-.+|.... +.++++.+|+.+.+... .-+..+|.+.+-.+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~--~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELI--EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 5688999999944455555677788888999999 99999999999887542 2356677776654433211111111
Q ss_pred HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 414 VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
-+-.+....+.+|.++.++|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+..+ ++.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 22223334678999999999999999999999999987 566 56788877777788889999999999875 4555
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 493 S-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 493 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
. -..|--|...|.|.++++.|+-.|+++. ..| +......++..+.+.|+.++|.++++++.-++|.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 4 4455556788999999999999999876 445 555667778889999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHhh
Q 006364 570 YAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 570 ~~~~g~~~~a~~~~~~m~~ 588 (648)
+...+++++|...++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 9999999999999999986
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-10 Score=113.42 Aligned_cols=282 Identities=12% Similarity=0.004 Sum_probs=150.6
Q ss_pred CChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCChHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVT-FIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP--SVCNCLITMYARFESMQDSE 310 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~ 310 (648)
|+++.|.+.+.+..+. .|+... +.....+....|+.+.+...+....+.. |+. .+.-.....+...|+++.|.
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666554443 233222 2233344455566666666666554432 222 22223345555555666555
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh
Q 006364 311 KVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV 386 (648)
Q Consensus 311 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~ 386 (648)
..++.+.+. +...+..+...+.+.|++++|.+.+....+ +.. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-----------------------
Confidence 555555422 333444555555555555555555555554 221 1111110000
Q ss_pred CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--
Q 006364 387 GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITF-- 461 (648)
Q Consensus 387 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-- 461 (648)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0011111111112233444555555553 36777888888888888888888888888774 3443321
Q ss_pred -HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h--HHHHHHHHHHhhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHH
Q 006364 462 -LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P--DHYSCMVDMLGRVGRLEEAEELVGQ--I-PGGPGLSVLQSLLG 534 (648)
Q Consensus 462 -~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~ 534 (648)
..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|+. . ...|+...+..+..
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 11112223346677777777776654 444 3 4555667777777777777777772 2 24566666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 006364 535 ACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+...|+.++|.+++++.+.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-10 Score=112.74 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=72.8
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||... .++.+....++.+++.+..+.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 34444445554432 24555555666666666666666666655542 333311 122222334566666666665
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+. .|+ ...+.++...+.+.|++++|.+.|+... ..|+...+..+...+...|+.++|.+++++.+.
T Consensus 320 ~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5543 443 4445555555555555555555555543 335555555555555555555555555555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-10 Score=115.76 Aligned_cols=276 Identities=10% Similarity=0.058 Sum_probs=197.3
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHhcCChHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCN--CLITMYARFESMQDSEK 311 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~ 311 (648)
|+++.|.+.+.......-.| ...|.....+....|+.+.+...+..+.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666665555443321111 122333344457889999999999888764 45544333 34678888999999999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCH-------HHHHHHHHHhccCchhhHHHHHHHH
Q 006364 312 VFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNA-------YTFGSVLNAVGAAEDISLKHGQRCH 380 (648)
Q Consensus 312 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~-------~~~~~ll~a~~~~~~~~~~~a~~~~ 380 (648)
.++.+.+. ++.....+...|.+.|++++|++++..+.+ ...++. .+|..++....... +.+....++
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--GSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH
Confidence 99888643 456778888999999999999999999988 433222 12233333322323 444444555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HH
Q 006364 381 SHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SI 459 (648)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 459 (648)
+.+-+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+. .|+ ..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 444322 35678888899999999999999999998776543322333455556679999999999999875 455 45
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
.+..+...|.+.|++++|.+.|+...+ ..|+...|..|..++.+.|+.++|.+++++.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677888999999999999999999974 5899999999999999999999999998864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-09 Score=100.53 Aligned_cols=313 Identities=10% Similarity=-0.006 Sum_probs=217.8
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHH-HHHHHHHhcCCcHHHHHH
Q 006364 265 ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWN-ALISGYAQNGLSLAAVQA 343 (648)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~ 343 (648)
+...|....|...+...+.. -+..|.+-+....-..+.+.+..+-...+..+...-. .+..++..-.+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666554432 2333444444333334444444443333322111111 123445555567777777
Q ss_pred HHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC
Q 006364 344 FFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--SDPIVGSALLDMYGKRGSIFESQRVFNETQE 420 (648)
Q Consensus 344 ~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 420 (648)
...... |++-+...-+....+..... +.++|..+|+.+.+..+- .|..+|+.++-.-..+.++.---+..-.+.+
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~r--DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQR--DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 777766 55444444433333444455 889999999998887431 2556666655333222222222222222333
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYS 498 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 498 (648)
=-+.|..++.+-|.-.++.++|+..|++..+ +.|. ...|+.+..-|....+...|++.++.++ .+.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHh
Confidence 3456777788888999999999999999988 4555 4667778888999999999999999997 5677 488999
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
.|..+|.-.+...-|+-.|++.. .+.|...|.+|+..|.+.++.++|++.|+++...+-.+..+|..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999876 4568889999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006364 577 EMVAILRKGMKS 588 (648)
Q Consensus 577 ~~a~~~~~~m~~ 588 (648)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=116.72 Aligned_cols=278 Identities=10% Similarity=0.027 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCH--HHHHHHHHHhccCchhhHHH
Q 006364 301 ARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNA--YTFGSVLNAVGAAEDISLKH 375 (648)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~~~ll~a~~~~~~~~~~~ 375 (648)
...|+++.|.+.+....+... ..+-.......+.|+++.|.+.|.+..+.. |+. ..-......+...+ +.+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~--~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQN--ELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCC--CHHH
Confidence 446788888777766654321 223333455666778888888877766522 332 22222355555566 7777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHH----HHHHHHHhCCChHHHHHHHHH
Q 006364 376 GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWT----AIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 448 (648)
|...++.+.+.. +-++.+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777665 334556667777777777777777777766643 222221 111222333333444445555
Q ss_pred HHHCCCC---CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 449 MENKGVR---PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDH---YSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 449 m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
+.+.... .+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5553211 25566666667777777777777777777654 444221 1111112223456666666665543
Q ss_pred CCC-CH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 522 GGP-GL--SVLQSLLGACRIHGNVEMGERIAD--ALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 522 ~~~-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..| ++ ....++...|.+.|++++|.+.++ ...+..|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 23 455677777777777777777777 344555544 34557777777777777777777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=121.92 Aligned_cols=250 Identities=15% Similarity=0.195 Sum_probs=100.7
Q ss_pred HHHHHHhcCChHHHHHHHhh-cC----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCch
Q 006364 296 LITMYARFESMQDSEKVFDE-LS----CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAED 370 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~ 370 (648)
+...+.+.|++++|.++++. +. ..|+..|..+.......+++++|...++++....+-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-
Confidence 34555566666666666632 21 12344555555555556666666666666665222234444444444 4455
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHhCCChHHHHHH
Q 006364 371 ISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+++.|..+.....+.. +++..+...+..+.+.|+++++.++++... ..+...|..+...+.+.|+.++|+..
T Consensus 92 -~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 -DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666665544332 455556667777888888888888877643 23667788888888899999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 446 FKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 446 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
|++..+ ..|+ ......++..+...|+.+++.++++...+.. ..+...+..+..++...|+.++|+..+++.. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999887 4564 5667788888888999998888888876652 3346677888888999999999999988865 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
+.|+.+...+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 45777778888899999999999888877654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-09 Score=98.93 Aligned_cols=383 Identities=10% Similarity=0.084 Sum_probs=215.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC--C--CchhhHHHhc----CChhhHHHHH
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD--R--NVISWTTMIS----MNREDAVSLF 243 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~----g~~~~a~~~~ 243 (648)
.+++..|..+|+..+... ..+...|-..+.+=.++..+..|..++++... | |-.-|.-+.- |++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445566777777766544 45666777777778888888888888876543 2 1111111111 5555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCccc
Q 006364 244 KEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIIS 323 (648)
Q Consensus 244 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (648)
..-.. ..|+...|.+.++.=.+-+.++.|..+++..+-. .|++..|-.....-.++|....
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~--------------- 225 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL--------------- 225 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH---------------
Confidence 54443 2455555555555544555555555555444332 2444444444444444444444
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhHh--CC-CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 006364 324 WNALISGYAQNGLSLAAVQAFFGVIK--ES-KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSD-PIVGSALL 399 (648)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li 399 (648)
|..+|..... +. ..+...|.+...--..+. ..+.+..++...+.+=.+.. ...|..+.
T Consensus 226 ----------------aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk--E~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 226 ----------------ARSVYERAIEFLGDDEEAEILFVAFAEFEERQK--EYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred ----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4444444443 11 111111222211112223 56666666666665432221 33444444
Q ss_pred HHHhhcCCHHHHHHHH--------hhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-------HH
Q 006364 400 DMYGKRGSIFESQRVF--------NETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-------TF 461 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~ 461 (648)
..--+-|+......+. +.+.+. |--+|--.+..--..|+.+...++|++.+.. ++|-.. .|
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 4444445544333332 222222 4456666677777778888888888887765 555321 12
Q ss_pred HHHHHHh---cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH----HHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 006364 462 LSVLTVC---GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM----VDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSL 532 (648)
Q Consensus 462 ~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 532 (648)
.-+=-+| ....+++.+.++|+...+ +.|. ..|+.-+ ..-..|+.++..|.+++.... ..|-..++...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHH
Confidence 1111122 346777888888877763 4554 4444333 333456777888888777655 44777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCc
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
+..-...++++....+|++.++-+|.+..+|...+..-...|+++.|..+++...++...--|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 7777778888888888888888888888888888888888888888888887776655433343
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-10 Score=106.76 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=165.5
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.....+..+...|...|++++|.+.++...+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987653 256788889999999999999999999998853 334567778888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 544 (648)
.+...|++++|.+.++...+..........+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999997642222236678888999999999999999998765 23456678889999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888889999999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-09 Score=93.04 Aligned_cols=316 Identities=15% Similarity=0.166 Sum_probs=157.1
Q ss_pred chhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCCC--chhHHHHHHHH
Q 006364 225 VISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTN-FLSE--PSVCNCLITMY 300 (648)
Q Consensus 225 ~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~ 300 (648)
+..-|.+++.+.++|+++|-+|.+. .| +..+-.++-+-|-+.|..+.|..+|..+.++- +..+ ......|..-|
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 3456788888999999999999873 22 22233345555666666666666666655431 1111 11122334445
Q ss_pred HhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH
Q 006364 301 ARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ 377 (648)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~ 377 (648)
...|-+|.|+.+|..+.+.+. .....|+..|-...++++|++.-++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k---------------------------- 169 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK---------------------------- 169 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------------------
Confidence 555555555555555543221 2233334444444444444444333332
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 457 (648)
.+-.+... -+.. .|.-+...+....+.+.|..++++..+.. |+
T Consensus 170 --------~~~q~~~~---eIAq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~ 212 (389)
T COG2956 170 --------LGGQTYRV---EIAQ------------------------FYCELAQQALASSDVDRARELLKKALQAD--KK 212 (389)
T ss_pred --------cCCccchh---HHHH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc
Confidence 22111110 0001 12223333344445555555555555432 22
Q ss_pred HH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 006364 458 SI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLL 533 (648)
Q Consensus 458 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 533 (648)
.+ .=..+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.++...++.++. ..+....-..+.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~ 289 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLA 289 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHH
Confidence 21 1123334445556666666666655544 343 4555556666666666666665555433 334444434444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEE
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK--GDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGF 611 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f 611 (648)
..-....-.+.|.....+-+...|.--..|..+-.-.... |++.+...++..|....++..|.+.--.-+ -..|.|
T Consensus 290 ~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG--F~a~~l 367 (389)
T COG2956 290 DLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG--FTAHTL 367 (389)
T ss_pred HHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC--Ccceee
Confidence 3333333344455555555555555444444443333333 557788888888888777777765544444 344555
Q ss_pred e
Q 006364 612 S 612 (648)
Q Consensus 612 ~ 612 (648)
.
T Consensus 368 ~ 368 (389)
T COG2956 368 Y 368 (389)
T ss_pred e
Confidence 4
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-12 Score=84.99 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=85.15 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcC
Q 006364 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGH 171 (648)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (648)
||+++||++|.+|++.| ++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~-~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAG-KFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999 999999999999999999999999999999875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-08 Score=96.63 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=165.5
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (648)
+.-.|+...|...|+..+...+.+...|.-+..+|.... +.+.....|....+.+. -++.+|..-..++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 455788889999999888833333333777777788888 88888889988887653 356677777777778889999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 411 SQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 411 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
|..=|++...- ++..|--+..+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999987653 5667777777888889999999999999886 555678888889999999999999999998863
Q ss_pred cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 488 YHIEPS---------PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 488 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+.|+ +.+.-.++. +.=.+++..|..++++.. ..| ....+.+|...-...|+.++|.++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 111111111 112388999999999876 333 45578889999999999999999999987653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-06 Score=84.97 Aligned_cols=428 Identities=11% Similarity=0.126 Sum_probs=240.5
Q ss_pred HHHhhcccChhhHhHHHHHHHHh-CCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHH
Q 006364 64 LSFCLDHEGFLFGLQLHSLIVKF-GLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 64 l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~ 142 (648)
+....++|++...+..|+..... .+.....+|...+......|-++.+.+++++..+-++..-+-.|.-++..+ +.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d-~~~e 187 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD-RLDE 187 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-chHH
Confidence 34445566666666666665543 334445566666666666666677777777666655555666677777777 6667
Q ss_pred HHHHHHHHHHCC------CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCC--CC--cchHHHHHHHHHhCCChHH
Q 006364 143 AILALIEMMRKG------LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYG--TH--VSVGNVLMSTYSKCEVTGD 212 (648)
Q Consensus 143 a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~ 212 (648)
|.+.+...+... .+-+...|..+-.-.++..+.-....+ +...+.|+. +| -..+++|.+-|.+.|.++.
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 666666554321 122333344433333333222211111 112222221 22 2467888888888888888
Q ss_pred HHHHHhcCCCC--CchhhHHHhc---------------------C------ChhhHHHHHHHHHHCC-C----------C
Q 006364 213 ANKVFRRMHDR--NVISWTTMIS---------------------M------NREDAVSLFKEMRLDG-V----------C 252 (648)
Q Consensus 213 A~~~~~~~~~~--~~~~~~~li~---------------------g------~~~~a~~~~~~m~~~g-~----------~ 252 (648)
|..+|++.... .+..++.+.. | +++-.+.-|+.+...+ + .
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 88888765441 1111111111 1 1222223333332221 0 0
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc-----
Q 006364 253 PNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLS------EPSVCNCLITMYARFESMQDSEKVFDELSCREI----- 321 (648)
Q Consensus 253 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----- 321 (648)
-+..+|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-..|+++.|+.+|++..+-+-
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 0111111111 12234455555666666553 222 123477888889999999999999998865433
Q ss_pred --ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCC-----------------CHHHHHHHHHHhccCchhhHHHHHHHHH
Q 006364 322 --ISWNALISGYAQNGLSLAAVQAFFGVIK-ESKP-----------------NAYTFGSVLNAVGAAEDISLKHGQRCHS 381 (648)
Q Consensus 322 --~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p-----------------~~~~~~~ll~a~~~~~~~~~~~a~~~~~ 381 (648)
.+|......=.++.+++.|+++.+.... .-.| +...|+..+..--..| .++....+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g--tfestk~vYd 501 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG--TFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence 3444444555567788889888877654 2111 2233444444445566 7888889999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC----CChh-HHHHHHHHHHh---CCChHHHHHHHHHHHHCC
Q 006364 382 HIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE----KSEF-AWTAIISALAR---HGDYESVMNQFKEMENKG 453 (648)
Q Consensus 382 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 453 (648)
.++...+.....+.| ..-.+-...-++++.++++.-.. |++. .|+..+.-+.+ ..+.+.|..+|++..+ |
T Consensus 502 riidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 999877653333332 22233445568889999987553 4443 67776655543 3468999999999998 7
Q ss_pred CCCCHHHHHHHHHHh--cccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 006364 454 VRPDSITFLSVLTVC--GRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVD 502 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~ 502 (648)
++|...-+..|+-|- .+-|....|+.++++... ++++. ...|+..|.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIK 630 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 888765444444332 345888888888888743 34443 445555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-07 Score=88.55 Aligned_cols=305 Identities=9% Similarity=-0.002 Sum_probs=211.2
Q ss_pred CCCChhhHHHHHHHH--hcCCchHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHH
Q 006364 251 VCPNDVTFIGLIHAI--SIGNLVKEGRMIHGLCIK-TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNAL 327 (648)
Q Consensus 251 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 327 (648)
+.|...+....+.++ +..++-..+.+.+-.+.+ ..++.++.....+.+.+...|+.++|...|++..--|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 334444444444443 334444444444443333 34667788888999999999999999999998765554433322
Q ss_pred ---HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 328 ---ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 328 ---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
.-.+.+.|+.+....+...+....+-....|..-........ +.+.|..+-...++... .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K--~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK--KFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh--hHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 334567788888877777776522222222211111122223 66677766666655432 122333333455667
Q ss_pred cCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHh-cccCcHHHHHH
Q 006364 405 RGSIFESQRVFNETQ--EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVL-TVC-GRNGMIHKGRH 479 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~ 479 (648)
.|+.++|.-.|.... .| +..+|.-|+.+|...|++.+|..+-+..... +..+..+...+. ..| -....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 899999999998654 44 7889999999999999999999988776553 445566665552 333 33344588999
Q ss_pred HHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 480 LFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 480 ~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
++++-. .+.|+ ....+.+...+.+.|+.+++..++++.. ..||....+.|...+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 998875 67998 8888899999999999999999999865 669999999999999999999999999999999999
Q ss_pred CCchh
Q 006364 558 AGSGS 562 (648)
Q Consensus 558 ~~~~~ 562 (648)
.+..+
T Consensus 503 ~~~~s 507 (564)
T KOG1174|consen 503 KSKRT 507 (564)
T ss_pred cchHH
Confidence 98544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-08 Score=91.81 Aligned_cols=285 Identities=13% Similarity=0.026 Sum_probs=190.9
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++..|.++..+-.+.+-.| ...|..-..+.-..|+.+.+..++.+..+.--.++..+.-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888887766654333 23445555666777888888888877777544555666666677777777777777666
Q ss_pred hhcC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 314 DELS---CREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 314 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
+++. .+++........+|.+.|++.+...++..+.+ +.-.++..- ++
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-------------------~l---------- 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-------------------RL---------- 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-------------------HH----------
Confidence 5543 44666777777777788877777777777776 443322110 00
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
...+++.+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|.. ..+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 112334444444444444555556666653 35666667777788888888888888888877777662 2334
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.+.+.++...-++..+.-.+.++-.| ..+.+|...|.+.+.|.+|...|+... .+|+...|.-+..++...|+.+.|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 56677777777777777766644444 667778888888888888888887644 568888888888888888888888
Q ss_pred HHHHHHHHhc
Q 006364 546 ERIADALMKM 555 (648)
Q Consensus 546 ~~~~~~~~~~ 555 (648)
.++.++.+-+
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8887776643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=108.49 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhcCCC----------Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHH
Q 006364 291 SVCNCLITMYARFESMQDSEKVFDELSCR----------EI-ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFG 359 (648)
Q Consensus 291 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 359 (648)
.+...|..+|...|+++.|..+++...+. .+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 34445666777777777777666554321 11 1223455566777777777777766642
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDY 439 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (648)
.....++... +.-..+++.|...|.+.|++++|...+
T Consensus 270 i~e~~~G~~h-------------------~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 270 IREEVFGEDH-------------------PAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred HHHHhcCCCC-------------------HHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 1111111111 112344556667778888888887764
Q ss_pred HHHHHHHHHHHHCCCC-CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCC---C-hHHHHHHHHHHhhcCCHH
Q 006364 440 ESVMNQFKEMENKGVR-PDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEP---S-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 440 ~~A~~~~~~m~~~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~ 511 (648)
+.|++++++. .|.. |.. .-++.+...|...+.+++|..++....+.+. ..+ . ..+++.|...|...|+++
T Consensus 307 e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 307 ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 5566666662 2222 222 3456677778888888888888887765433 222 2 578999999999999999
Q ss_pred HHHHHHhhCC-------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHhcC
Q 006364 512 EAEELVGQIP-------G--GPG-LSVLQSLLGACRIHGNVEMGERIADALMKM----EPAG---SGSYVLMSNLYAEKG 574 (648)
Q Consensus 512 ~A~~~~~~~~-------~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g 574 (648)
+|+++++++. . .+. ...++.|...|...++.+.|.++|++...+ +|++ ..+|..|+.+|.+.|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 9999998765 1 122 346788889999999999999998887653 4544 457999999999999
Q ss_pred CcHHHHHHHHHHh
Q 006364 575 DWEMVAILRKGMK 587 (648)
Q Consensus 575 ~~~~a~~~~~~m~ 587 (648)
++++|.++.+.+.
T Consensus 465 ~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 465 NYEAAEELEEKVL 477 (508)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999988764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-08 Score=90.01 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred CHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQEK-----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.+.-|.+.|+..-+. .+.--.++.+++.-..++++++-.++....- +..|..--..+.+|.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 345566666544332 3344566777777777888888888877765 3333333345778889999999999999
Q ss_pred HHhHHhcCCCCChHHH-HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 482 DSMLKDYHIEPSPDHY-SCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSL-LGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
-..... .++ +..+| ..|..+|.+.+..+-|.+++-++..+.+..++..+ .+-|.+.+.+--|-++|..+..++|..
T Consensus 417 ~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 417 IRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877422 222 34444 55678999999999999999888755555554444 478999999999999999998888753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-08 Score=92.32 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=180.7
Q ss_pred cCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 303 FESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 303 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
.|++..|+++..+-.+. .+..|..-..+-.+.|+.+.+-.++.+..+ ...++....-+........+ +.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~--d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR--DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC--CchhHHH
Confidence 35666666655554322 122333333444555666666666666555 33444444444445555555 5666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCC-----------hhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKS-----------EFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
-...+.+.+. -.+.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5555555442 344555666677777777777777777666532 2367777777777777777666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPG 525 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 525 (648)
+...+ .+-++..-.+++.-+...|+.++|.++.++..++ +..|+. ..++ ...+-++.+.=.+..++.. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 66554 5666666677788888999999999999988877 666661 1122 2334555544444443322 2234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..+.+|+..|.+++.+.+|...++.++...|+. ..|..++.+|.+.|+..+|..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4789999999999999999999999988887764 789999999999999999999988765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-07 Score=91.24 Aligned_cols=433 Identities=14% Similarity=0.096 Sum_probs=242.0
Q ss_pred HhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhh
Q 006364 85 KFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVS 161 (648)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t 161 (648)
...+..|+.+|..|.=++.++|+++.+.+.|++... .....|+.+-..+...| ....|+.+++.-....-.|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcch
Confidence 334678899999999999999999999999998764 35567999999999999 77899999887665443454444
Q ss_pred HHH-HHHHhc-CCCChhHHHHHHHHHHHhc--C--CCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCC
Q 006364 162 FTS-AASACG-HEKNLELGKQIHGVSIKMG--Y--GTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMN 235 (648)
Q Consensus 162 ~~~-ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~ 235 (648)
--. .-+.|. +.+..+++..+-..++... . ......|-.+--+|...-. +.+..+-.. ..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~seR~---~~ 459 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKSERD---AL 459 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChHHHH---HH
Confidence 333 333343 4455666666555555421 0 1111222222222221100 000000000 12
Q ss_pred hhhHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHh
Q 006364 236 REDAVSLFKEMRLDG-VCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 236 ~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
..++++.+++-.+.+ -.|+...|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 245555555554432 22333333222 234455666666666666666555556666666666666666666666555
Q ss_pred hcCCCCcccHHHH---HHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 315 ELSCREIISWNAL---ISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 315 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
...+.-..-++.+ +..-..-++.++++.....+.. .-.+.. .+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~---------------------q~----------- 585 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV---------------------QQ----------- 585 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH---------------------hh-----------
Confidence 4321111111100 1111123444444444444332 000000 00
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcC----CC-C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--C----
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQ----EK-S-EFAWTAIISALARHGDYESVMNQFKEMENKGVRP--D---- 457 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~---- 457 (648)
.|+-....+.+..+. ++ + +.++.-+.. ... -+.+.+..-.. |...-+.| +
T Consensus 586 ---------------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 586 ---------------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ---------------hhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCCCchHH
Confidence 000111112222111 00 1 111111111 111 00000000000 11111222 2
Q ss_pred --HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 458 --SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 458 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
...|......+.+.+..++|...+.+.. ++.|- ...|......+...|.+++|.+.|.... .+.++.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 1234455566788888888888888774 55665 7778888888999999999999887654 44456788889
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 533 LGACRIHGNVEMGER--IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...+...|+-..|+. +...+.+++|.++..|..|+.++.+.|+.++|.+.+....+
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999998888888 99999999999999999999999999999999999987644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-08 Score=88.20 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=177.1
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHhhcCCHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG-LDSD--PIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~ 409 (648)
-+++.++|+++|-+|.+..+.+..+--++-+.+-+.| ..+.|..+|..+.++. ++.+ ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3456677777777776644445555555666666667 7777777777766532 1111 123345677788999999
Q ss_pred HHHHHHhhcCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHH
Q 006364 410 ESQRVFNETQEKSE---FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----ITFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 410 ~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
.|+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.|-.+.. ..|.-+........+++.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999887443 45667899999999999999999999987655543 356677777888899999999999
Q ss_pred HhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 483 SMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG--LSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 483 ~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+..+. .|+ +..--.+.+.....|+++.|.+.++... ..|+ +.+...|..+|...|+.+++...+.++.+..+.
T Consensus 205 kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 98754 676 5566677899999999999999999876 3343 346788889999999999999999999988776
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 559 GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
... -..+...-....-.+.|...+
T Consensus 282 ~~~-~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 282 ADA-ELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred ccH-HHHHHHHHHHhhChHHHHHHH
Confidence 543 334444444333344444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=107.52 Aligned_cols=245 Identities=12% Similarity=0.045 Sum_probs=173.4
Q ss_pred CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc---------cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 336 LSLAAVQAFFGVIKESKPNAYTFGSVLNAVG---------AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 336 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
..++|+..|++..+..+-+...+..+..++. ..+ +.++|...++...+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~--~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQN--AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccch--HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467777777776643444445544433322 223 5788888888888765 336677788888899999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 407 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998664 3 4667888999999999999999999999884 55532 33334445666889999999999
Q ss_pred HhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 483 SMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGL-SVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 483 ~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+..+. ..|+ ...+..+..+|...|++++|...++++. ..|+. ..++.+...+...| +.|...++.+.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88654 2354 6667888899999999999999998865 33443 34455555666667 47888788877654333
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+..+..+..+|+-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333377788888888777766 7776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=97.72 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVC 468 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 468 (648)
..+..+...|.+.|+.++|...|+...+ .+...|+.+...+...|++++|+..|++..+ +.|+ ..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3455555666666777777766665543 2456677777777777777777777777665 3444 45556666666
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
...|++++|.+.|+...+. .|+..........+...++.++|...+++.....+...|.. .......|+...+ ..
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HH
Confidence 6677777777777766543 45422111112223345667777776654321111122221 1222234444333 23
Q ss_pred HHHHH-------hcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 549 ADALM-------KMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 549 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+. ++.|..+.+|..++.+|...|++++|...+++..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333 33455556777777777777777777777766554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-06 Score=85.60 Aligned_cols=157 Identities=19% Similarity=0.282 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+..|+.+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++....++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 457999999999999999999887432 35678999999999999999999999877665 6666655 46888
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
+|++.+++.+-++++. .|+..-...++.-|...|.++.|.-+|.. .+.|..|+..+...|.++.|.+.
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777654 57888888999999999999988888764 46788888888888998888877
Q ss_pred HHHHhhCCCccCCceeEE
Q 006364 583 RKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 583 ~~~m~~~~~~~~~~~s~~ 600 (648)
-++.......|....+-+
T Consensus 1243 aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hhhccchhHHHHHHHHHh
Confidence 665544444444433333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-05 Score=82.13 Aligned_cols=532 Identities=14% Similarity=0.126 Sum_probs=261.9
Q ss_pred ccccCCChhHHHHHhhcCCC--CCcch-----HHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccCh
Q 006364 3 MYCKSGQFDKALCIFNNLNN--PDIVS-----WNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGF 73 (648)
Q Consensus 3 ~~~~~g~~~~A~~~f~~~~~--p~~~~-----~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 73 (648)
.|.+.|-...|++.|..+.. +.+++ =.-+..-|.+.. ++.+.++.|...+++-|..+.-.+..-|...-..
T Consensus 615 LCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~ 694 (1666)
T KOG0985|consen 615 LCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGA 694 (1666)
T ss_pred HHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence 35677888888888887653 22221 112344455555 8899999999988887777766666666554445
Q ss_pred hhHhHHHHHHHHh-----------CCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-------------------C--
Q 006364 74 LFGLQLHSLIVKF-----------GLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-------------------K-- 121 (648)
Q Consensus 74 ~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-- 121 (648)
+...++|+..... ++..|+.+.-..|.+.++.|++.+..++..+-.- |
T Consensus 695 ~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLi 774 (1666)
T KOG0985|consen 695 QALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLI 774 (1666)
T ss_pred HHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceE
Confidence 5555666554431 3467888888999999999999999888765431 1
Q ss_pred ----------CcchH------HHHHHHHHcCCCChHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHhcCCCC
Q 006364 122 ----------DSVSW------NAILSGYTQDGDYGVEAILALIEMMRKGLRL-----------DHVSFTSAASACGHEKN 174 (648)
Q Consensus 122 ----------~~~~~------~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~ 174 (648)
|.+.| --.|..|++.- ++.+.-.+.-.++...+.- ..+....|..-+-+.++
T Consensus 775 iVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkv-Nps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNR 853 (1666)
T KOG0985|consen 775 IVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKV-NPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNR 853 (1666)
T ss_pred EEecccccHHHHHHHHHHhhHHHHHHHHHhhc-CCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhh
Confidence 11111 12344444433 2222222222222211100 01112233344455666
Q ss_pred hhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH----------HHHhcCCC----------------------
Q 006364 175 LELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDAN----------KVFRRMHD---------------------- 222 (648)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----------~~~~~~~~---------------------- 222 (648)
+..-...++..+..|. .|..++|+|...|..+++-.+-. .+=+-..+
T Consensus 854 LklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~v 932 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINV 932 (1666)
T ss_pred HHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHh
Confidence 6666777777777774 57888899988887665433210 00000111
Q ss_pred -----------------CCchhhHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006364 223 -----------------RNVISWTTMISMNREDAVSLFKEMRLDGVC--PNDVTFIGLIHAISIGNLVKEGRMIHGLCIK 283 (648)
Q Consensus 223 -----------------~~~~~~~~li~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 283 (648)
.|...|+.++...-.--..+.++...-+++ -|.......++++...+-..+-.+++++++-
T Consensus 933 cNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen 933 CNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred cCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 233333333332222223344444443332 1334444555555555555555555555442
Q ss_pred hc--CCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHH
Q 006364 284 TN--FLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSV 361 (648)
Q Consensus 284 ~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 361 (648)
.. +..+...-|.|+-.-.+. +.....+..+++..-|.. .+......++-+++|..+|++.- .+......+
T Consensus 1013 ~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL 1084 (1666)
T KOG0985|consen 1013 DNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL 1084 (1666)
T ss_pred CCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH
Confidence 11 111222223333222222 233333444443322211 11223344555667776665542 233333333
Q ss_pred HH--------------------------HhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHH
Q 006364 362 LN--------------------------AVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVF 415 (648)
Q Consensus 362 l~--------------------------a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (648)
+. |-.+.+ ...+|..-|-. .-|+..|..+++...+.|.+++-.+.+
T Consensus 1085 ie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~--~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGG--LVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcC--chHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33 222222 22222222111 123444444555555555555554444
Q ss_pred hhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC
Q 006364 416 NETQEK--SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS 493 (648)
Q Consensus 416 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 493 (648)
...+++ .+..=+.||-+|++.++..+-.+++ .-||......+..-|...|.++.|.-+|...
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 333221 2222334555555555444333222 2344444445555555555555555555433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH------------------------------cCCHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI------------------------------HGNVE 543 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~g~~~ 543 (648)
..|..|...+...|.++.|.+.-++.. +..+|..+--+|.. .|-++
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 346667777777777777776665543 44455555555544 44444
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
+-..+++..+.++..+.+.|.-|+-+|++
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 44444444444445555555555555554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=88.15 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=137.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
..-|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 445677889999999999999998884 454 5788888888999999999999999886 55886 8888888999
Q ss_pred HhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 579 (648)
+|..|++++|...|++....|. ..+|..++.+..+.|+.+.|+..+++.++.+|+.+.....+++.+...|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988764443 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 006364 580 AILRKGMKSKGV 591 (648)
Q Consensus 580 ~~~~~~m~~~~~ 591 (648)
.-++++...++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988876654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-07 Score=92.78 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=142.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
+++.+.+++++..... .++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.--|...|+..+|++.|
T Consensus 258 c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 258 CRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred ChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4566666666665543 2344445555566777777766666555555553 4667778888888888889999999999
Q ss_pred hhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 314 DELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 314 ~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
.+...-|. ..|-.+...|+-.|..++|+..|...-+-++-...-+--+---|.+.+ +.+.|.++|....... +.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~--n~kLAe~Ff~~A~ai~-P~ 412 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN--NLKLAEKFFKQALAIA-PS 412 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc--cHHHHHHHHHHHHhcC-CC
Confidence 88765443 678889999999999999999888776622221111122223344555 6677777766655432 44
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEK----------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
|+.+.+-+.-.....+.+.+|..+|+....+ -..+++.|..+|.+.+++++|+..|++.... .+-|..|
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~ 491 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDAST 491 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhH
Confidence 5666666666666666666666666543311 1122444444444444444444444444432 2223344
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHh
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
+.++.-.+...|+++.|+..|.+.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHH
Confidence 444444444444444444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=95.03 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+. .|+ ...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHH
Confidence 4567888999999999999999999998752 334677788888999999999999999998754 454 67888889
Q ss_pred HHHhhcCCHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 502 DMLGRVGRLEEAEELVGQIPGG----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
..+...|++++|.+.+++.... .....+..+...+...|+++.|...++++.+..|.++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987532 235567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 006364 578 MVAILRKGMKSK 589 (648)
Q Consensus 578 ~a~~~~~~m~~~ 589 (648)
+|.+.+++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-08 Score=96.75 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=141.2
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHh-----cC-CCCch-hHHHHHHHHHhcCChHHHHHHHhhcCC--------C
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKT-----NF-LSEPS-VCNCLITMYARFESMQDSEKVFDELSC--------R 319 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--------~ 319 (648)
..+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999999887764 21 12222 233466788899999999999877631 1
Q ss_pred C---cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCC-CCch-hH
Q 006364 320 E---IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGL-DSDP-IV 394 (648)
Q Consensus 320 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~ 394 (648)
+ ..+++.|...|.+.|++++|...+++..+ |+.. ..|. .|.. ..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~--~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEK--LLGASHPEVAAQ 327 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHH--hhccChHHHHHH
Confidence 1 24566666677777777777776655432 1111 0000 0111 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD----SITFLSVLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~ 470 (648)
.+.+...+...+++++|..++.. |++++.. -+.++ ..+++.+...|.+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~------------------------al~i~~~----~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQK------------------------ALKIYLD----APGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHH------------------------HHHHHHh----hccccchHHHHHHHHHHHHHHH
Confidence 22333334444444444444321 1111111 01222 2456666666667
Q ss_pred cCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDY-----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPG-LSVLQSLLGA 535 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~ 535 (648)
.|++++|.++|++++... +..+. ...++.|...|.+.++.++|.++|.+.. ..|+ ..+|..|...
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 777777777766665431 12232 4556667777777777777777665533 2233 3478888888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALM 553 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~ 553 (648)
|...|+++.|+++.+.+.
T Consensus 460 Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 888888888888888776
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-08 Score=104.23 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG---------KRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDY 439 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 439 (648)
+.++|...++...+.... +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 678888888888865422 3445555555443 23458899999987764 3677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 440 ESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 440 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
++|+..|++..+. .|+ ...+..+..++...|++++|+..+++..+ +.|+ ...+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 455 56777888889999999999999999974 4676 333344455567789999999999
Q ss_pred hhCCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 518 GQIPG--GP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 518 ~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++... +| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 88642 34 34556777788889999999999999998888888888888999999888 478887777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-05 Score=77.30 Aligned_cols=470 Identities=13% Similarity=0.140 Sum_probs=280.2
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC----------CcchHHH
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK----------DSVSWNA 128 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ 128 (648)
.|...+......+-++-+..++++.++. ++..-+-.|..+++.+++++|.+.+..+... +-..|+-
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3444444445556666677777766643 3334666777778888888888777766532 3334655
Q ss_pred HHHHHHcCCCChH---HHHHHHHHHHHCCCCCCh--hhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006364 129 ILSGYTQDGDYGV---EAILALIEMMRKGLRLDH--VSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMST 203 (648)
Q Consensus 129 li~~~~~~g~~~~---~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 203 (648)
+-...+++. +.- ..-.+++.+.. .-+|. ..+.+|.+-|.+.|.++.|..+++...+.-. .+.-++.+-+.
T Consensus 216 lcdlis~~p-~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~ 290 (835)
T KOG2047|consen 216 LCDLISQNP-DKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDA 290 (835)
T ss_pred HHHHHHhCc-chhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHH
Confidence 555555544 211 11122222221 22443 3567777777788888888877777665422 22223333333
Q ss_pred HHhC----------------C------ChHHHHHHHhcCCC---------------CCchhhHHHhc---CChhhHHHHH
Q 006364 204 YSKC----------------E------VTGDANKVFRRMHD---------------RNVISWTTMIS---MNREDAVSLF 243 (648)
Q Consensus 204 ~~~~----------------g------~~~~A~~~~~~~~~---------------~~~~~~~~li~---g~~~~a~~~~ 243 (648)
|+.- | +++-...-|+.+.. .++..|..-.. |+..+-...+
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 3221 1 12222233333322 23344443333 7788888888
Q ss_pred HHHHHCCCCCC------hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHh
Q 006364 244 KEMRLDGVCPN------DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE---PSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 244 ~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
.+..+. +.|. ...|..+.+-|-..|+++.|+.+|++..+..++-- ..+|..-..+-.+..+++.|.++.+
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 887664 3332 23466777888899999999999999887654432 3455555566667788889988887
Q ss_pred hcC---CC------------------CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CC-CCCHH-HHHHHHHHhccCch
Q 006364 315 ELS---CR------------------EIISWNALISGYAQNGLSLAAVQAFFGVIK-ES-KPNAY-TFGSVLNAVGAAED 370 (648)
Q Consensus 315 ~~~---~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~p~~~-~~~~ll~a~~~~~~ 370 (648)
... .+ +...|...++.--..|-++....+|+++.. .+ .|... -|..+|. ...
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---eh~- 525 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---EHK- 525 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhH-
Confidence 653 11 223566666666667788888888888888 43 34322 2333333 222
Q ss_pred hhHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHhh---cCCHHHHHHHHhhcCCCChhHH-HHHHHHH----HhCCChHH
Q 006364 371 ISLKHGQRCHSHIIKVGLDSDP-IVGSALLDMYGK---RGSIFESQRVFNETQEKSEFAW-TAIISAL----ARHGDYES 441 (648)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~-~~li~~~----~~~g~~~~ 441 (648)
-++++.++++.-+..--.|+. .+|+.-+.-+.+ ..+++.|..+|++..+.-+..+ -++.-.| -..|-...
T Consensus 526 -yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 -YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred -HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566666666554433223443 345554444433 3478999999998775322211 1222223 34688899
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHH
Q 006364 442 VMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
|+.+|++.... +++.. ..|+..|.--...=-+.....+|++.++. -|+ ....-...+.=++.|..+.|..+
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999997654 66654 56777775443333344556777777754 565 33344456777889999999999
Q ss_pred HhhCC--CC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 517 VGQIP--GG--PGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 517 ~~~~~--~~--~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
+.... .. .+...|.+.-..-.+|||-+.-.+
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 87644 22 466789999888999999444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-06 Score=83.01 Aligned_cols=466 Identities=14% Similarity=0.112 Sum_probs=246.9
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHH--HHHHHH--cCC
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNA--ILSGYT--QDG 137 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g 137 (648)
+=+..+...+++++|.+....+...+ +.|...+..=+-++.+.+++++|+.+.+.-... .+++. +=.+|| +.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34455667888999999999888776 555666667677788889999999776543321 22222 244554 456
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhCCChHHHHH
Q 006364 138 DYGVEAILALIEMMRKGLRLDHV-SFTSAASACGHEKNLELGKQIHGVSIKMGYGT-HVSVGNVLMSTYSKCEVTGDANK 215 (648)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 215 (648)
..++|+..+. |..++.. +...-...|-+.+++++|..+|..+.+++.+. +...-..++.+-..
T Consensus 94 -k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--------- 158 (652)
T KOG2376|consen 94 -KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--------- 158 (652)
T ss_pred -cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------
Confidence 7788888777 3333332 44444455667777777777777776665321 11111111111000
Q ss_pred HHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH---HHhcCCchHHHHHHHHHHHHhcCCCCchh
Q 006364 216 VFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIH---AISIGNLVKEGRMIHGLCIKTNFLSEPSV 292 (648)
Q Consensus 216 ~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (648)
.. -..|......| ..+|..+.+ .+...|++.+|.++++...+.+.+.
T Consensus 159 ------------------------l~-~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~---- 208 (652)
T KOG2376|consen 159 ------------------------LQ-VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK---- 208 (652)
T ss_pred ------------------------hh-HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh----
Confidence 00 00122222333 234443333 2345677777777766654322100
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHH---HHhccCc
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVL---NAVGAAE 369 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll---~a~~~~~ 369 (648)
| ..++.. -.++-.++ + ..---|.-.+...|+..+|..+|....+..++|........ .+...-.
T Consensus 209 ---l-----~~~d~~-eEeie~el---~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 209 ---L-----EDEDTN-EEEIEEEL---N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred ---h-----cccccc-hhhHHHHH---H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 0 000000 00000000 0 00112233445566666666666666664444442222211 1111111
Q ss_pred hhhHHH--------------HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH
Q 006364 370 DISLKH--------------GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKS-EFAWTAIISALA 434 (648)
Q Consensus 370 ~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 434 (648)
++-. +......+.+ .-......-+.++.+|. +..+.+.++-....... ...+.+++....
T Consensus 276 --~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 276 --NYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred --ccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 1100 0001111110 00111222234555553 45566666666665432 334444444332
Q ss_pred --hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHH
Q 006364 435 --RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFD--------SMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 435 --~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
+.....+|.+++...-+....-........+.-....|+++.|.+++. ...+. +.. +.+...++..+
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~ 427 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALY 427 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHH
Confidence 223577788888777664222223444555566688999999999998 44322 333 44556677888
Q ss_pred hhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 505 GRVGRLEEAEELVGQIP--------GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.+.++.+.|..++.+.. .++. ..+|.-+...-.++|+-++|...++++.+.+|++......+.-+|++. +
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-C
Confidence 88887666666655433 2222 223444555567789999999999999999999999999999999875 3
Q ss_pred cHHHHHHHHHHhhCCCccCCceeEEEE
Q 006364 576 WEMVAILRKGMKSKGVRKEVGFSWADV 602 (648)
Q Consensus 576 ~~~a~~~~~~m~~~~~~~~~~~s~~~~ 602 (648)
.+.|..+- +.+.|.++..-++|
T Consensus 507 ~eka~~l~-----k~L~p~~~l~~vdV 528 (652)
T KOG2376|consen 507 PEKAESLS-----KKLPPLKGLKAVDV 528 (652)
T ss_pred HHHHHHHh-----hcCCCcccchhcCc
Confidence 45555553 34445555443333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-06 Score=76.86 Aligned_cols=312 Identities=9% Similarity=0.006 Sum_probs=183.0
Q ss_pred CCCCchhHHHHHHHHHhc--CChHHHHHHHhhcC-----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCC---CCH
Q 006364 286 FLSEPSVCNCLITMYARF--ESMQDSEKVFDELS-----CREIISWNALISGYAQNGLSLAAVQAFFGVIKESK---PNA 355 (648)
Q Consensus 286 ~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~ 355 (648)
++|...+...-+.+++.+ ++...|...+-.+. ..|+.....+..++...|+.++|+..|++...-.+ ...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 444444444445555543 44444443332222 33667778888888889999999888887765111 112
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 006364 356 YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISA 432 (648)
Q Consensus 356 ~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 432 (648)
..|..++. +.| +.+....+...+.... +-+...|-.-........+++.|+.+-++..+. ++..+-.-...
T Consensus 270 D~Ya~LL~---~eg--~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l 343 (564)
T KOG1174|consen 270 DLYAVLLG---QEG--GCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRL 343 (564)
T ss_pred HHHHHHHH---hcc--CHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHH
Confidence 22333332 333 4444444444443221 011111222222233445677777766655443 34444444456
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHhh-cCC
Q 006364 433 LARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMV-DMLGR-VGR 509 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-~~~~~-~g~ 509 (648)
+.+.|+.++|.-.|+..+. +.| +..+|-.|+.+|...|...+|.-.-+...+. +.-+..+...+. ..+.- ...
T Consensus 344 L~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchh
Confidence 7777777887777777765 343 4577778888887777777777666655433 122344444332 22222 223
Q ss_pred HHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 510 LEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 510 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
-|+|.+++++.. .+|+ ....+.+...|...|..+.+..++++.+...|++ ..+..|++++...+.+++|.+.+....
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467777777644 4454 3355666677777788888888888777766654 677777888877777777777776443
Q ss_pred hCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 588 SKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 588 ~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
...|+.+.-.+.|++|.++++
T Consensus 499 ----------------------------r~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 499 ----------------------------RQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred ----------------------------hcCccchHHHHHHHHHHhccC
Confidence 456777777888888888887
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=91.26 Aligned_cols=224 Identities=12% Similarity=0.040 Sum_probs=141.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 325 NALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
+.+..+|.+.|.+.+|.+.|+.-.. ..|-+.||..+ -..|.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-q~~~~dTfllL-------------------------------------skvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-QFPHPDTFLLL-------------------------------------SKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-cCCchhHHHHH-------------------------------------HHHHHH
Confidence 4566677777777777776655443 22333344444 444555
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 405 RGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
..++..|+.+|.+..+ | |+....-+...+-..++.++|.++|++..+. -..+......+...|...++.+-|+.+|
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHH
Confidence 5555555555554443 2 2222233444455555666666666666553 1223334444445555566666666666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP---GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+.+.+- |+ -+.+.|+.+.-++.-.++++-++.-|.+.. ..| -..+|..|.......||+..|.+.|+.++..+
T Consensus 348 RRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 666543 43 234556666666666666666666555443 122 34578888888888999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
|++...++.|+-+-.+.|+.++|..+++..++.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999999999877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=91.36 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=172.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC--CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH-HHHHHHhccC
Q 006364 292 VCNCLITMYARFESMQDSEKVFDELS--CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF-GSVLNAVGAA 368 (648)
Q Consensus 292 ~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~-~~ll~a~~~~ 368 (648)
.-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..++..|+.+|.+-.... |..+|| ..+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~A------ 297 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQA------ 297 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhH------
Confidence 34678899999999999999998764 4577899999999999999999999998876643 334443 2222
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHH
Q 006364 369 EDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
..+...++.++|.++++...+. ++.+..++..+|.-.++.+-|+..
T Consensus 298 -------------------------------Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 298 -------------------------------RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred -------------------------------HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 2233345667777777765542 556666677788888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-- 521 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 521 (648)
|+++...|+. +...|+.+.-+|...+++|-++..|...... --.|+ .++|-.+.....-.|++.-|.+.|+-..
T Consensus 347 YRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 8888888754 5667777877888888888888888887655 44455 6778888888888888888888888665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 522 GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 522 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.......++.|.-.-.+.|+++.|..++..+....|.-.+
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 2244567888887778888888888888888888776443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-06 Score=77.92 Aligned_cols=384 Identities=12% Similarity=0.036 Sum_probs=206.3
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHH
Q 006364 168 ACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMR 247 (648)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~ 247 (648)
++-+.|++++|...+..+.+. -.++..++-.|..++.-.|.+.+|..+-...++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k------------------------- 119 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK------------------------- 119 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-------------------------
Confidence 334555555555555555442 234444444455555555666666665443322
Q ss_pred HCCCCCChhhH-HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC--cccH
Q 006364 248 LDGVCPNDVTF-IGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE--IISW 324 (648)
Q Consensus 248 ~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 324 (648)
.... ..+++...+.++-++-..+++.+.+.- .---+|..+....-.+++|++++.++...+ -...
T Consensus 120 -------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 120 -------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred -------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 1112 222333334455555444444443321 111233333334446677777777765433 2344
Q ss_pred HHH-HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccC--chhhHHHHHH----------HHHHHHHhCCC--
Q 006364 325 NAL-ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAA--EDISLKHGQR----------CHSHIIKVGLD-- 389 (648)
Q Consensus 325 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~--~~~~~~~a~~----------~~~~~~~~~~~-- 389 (648)
|.- .-+|.+..-++-+.+++.--.+.++-+....+.......+. |+...++-.. ....+.++++.
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 433 34566666677676666666554444444433322221111 1000111111 11222222210
Q ss_pred ----------C-----chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------ChHHHHHHHH
Q 006364 390 ----------S-----DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHG-------DYESVMNQFK 447 (648)
Q Consensus 390 ----------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~ 447 (648)
| -+..--.|+-.|.+.+++.+|..+...+....+.-|-.-.-.++..| ...-|.+.|+
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 1 12223346667889999999999988877555444433333333333 3444555555
Q ss_pred HHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC--C
Q 006364 448 EMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG--P 524 (648)
Q Consensus 448 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 524 (648)
-.-+++...|.. ---+...++.-..++++.+-++++...- =..-|...+ .+..+++..|.+.+|+++|-.+..+ .
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 554555554432 2334455556667888888888888543 233334444 4688999999999999999877633 4
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC-CCC-chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccC
Q 006364 525 GLSVLQSLLGACR-IHGNVEMGERIADALMKME-PAG-SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKE 594 (648)
Q Consensus 525 ~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 594 (648)
+..+|.+++.-|. ..+..+. +++.+++.+ |.+ ......+++.+.+.+.+--|.+.+..+......|+
T Consensus 426 n~~~Y~s~LArCyi~nkkP~l---AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQL---AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchH---HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 6677877776555 4555544 566666665 333 33455778889999999889999988876554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-07 Score=86.14 Aligned_cols=226 Identities=9% Similarity=0.014 Sum_probs=144.5
Q ss_pred CcHHHHHHHHHhHh--CCCCC--HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHH
Q 006364 336 LSLAAVQAFFGVIK--ESKPN--AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES 411 (648)
Q Consensus 336 ~~~~A~~~~~~m~~--~~~p~--~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 411 (648)
..+.++..+.++.. ...|+ ...|..+-..+...| +.+.|...+....+.. +.++..|+.+...|...|++++|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455555555554 12221 233444444555566 6666666666666644 33567788888889999999999
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 412 QRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 412 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
...|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999987754 3 5678888889999999999999999998874 555432222222345567899999999776433
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHH--HHHHhh-CCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 006364 489 HIEPSPDHYSCMVDMLGRVGRLEEA--EELVGQ-IPGG-----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG- 559 (648)
Q Consensus 489 ~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 559 (648)
..|+...+ .++.. ..|+..++ .+.+.+ .... .....|..+...+...|+.++|...|+++++.+|.+
T Consensus 195 -~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23443222 23332 34554333 332322 1111 234578999999999999999999999999999754
Q ss_pred chhHHHHHHHHH
Q 006364 560 SGSYVLMSNLYA 571 (648)
Q Consensus 560 ~~~~~~l~~~~~ 571 (648)
...-..++....
T Consensus 271 ~e~~~~~~e~~~ 282 (296)
T PRK11189 271 VEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-05 Score=81.42 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
=++.|.+.++-+.+..|++..+|..-..+|.+.|++--|.+.+++
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 468899999999999999999999999999999999988887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00011 Score=73.62 Aligned_cols=456 Identities=12% Similarity=0.094 Sum_probs=213.6
Q ss_pred hhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEA 143 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a 143 (648)
|...+++..++.+.+.+.+. .+....+....-=.+...|+-++|......-.. ++.++|..+--.+.... ++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHHHH
Confidence 44567788888888887773 333334433333334556888888887766554 45677887766666666 89999
Q ss_pred HHHHHHHHHCCCCCChh-hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC
Q 006364 144 ILALIEMMRKGLRLDHV-SFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD 222 (648)
Q Consensus 144 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (648)
+..|...... .||.. .+.-+---=++.++++........+.+.. +.....|..+..++.-.
T Consensus 95 iKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~--------------- 156 (700)
T KOG1156|consen 95 IKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL--------------- 156 (700)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH---------------
Confidence 9999988874 34443 22211111122233332222222222210 00111122222222222
Q ss_pred CCchhhHHHhcCChhhHHHHHHHHHHCC-CCCChhhHHHHHHHH------hcCCchHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 223 RNVISWTTMISMNREDAVSLFKEMRLDG-VCPNDVTFIGLIHAI------SIGNLVKEGRMIHGLCIKTNFLSEPSVCNC 295 (648)
Q Consensus 223 ~~~~~~~~li~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (648)
|+...|..++++..+.. -.|+...|.....-+ ...|..+.|.+.+..-... +......-..
T Consensus 157 -----------g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ 224 (700)
T KOG1156|consen 157 -----------GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEET 224 (700)
T ss_pred -----------HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhh
Confidence 56666666666665543 245555554433322 3445555555544432221 1111222233
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCc--ccHHH-HHHHHHhcCCcHHHH-HHHHHhHhCCC----CCHHHHHHHHHHhcc
Q 006364 296 LITMYARFESMQDSEKVFDELSCREI--ISWNA-LISGYAQNGLSLAAV-QAFFGVIKESK----PNAYTFGSVLNAVGA 367 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~~----p~~~~~~~ll~a~~~ 367 (648)
-.+.+.+.+++++|..++..+..+++ .-|.. +..++.+--+..+++ .+|.......+ |-....+ +++ .
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---G 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---c
Confidence 44556667777777777776654433 33333 233333333333343 33433333111 1111111 111 1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 368 AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
.. -.+....++....+.|+++ ++..+...|-.-...+ +.+++ +..|...+.+. ......+
T Consensus 301 ee--l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~L----vt~y~~~L~~~-------~~f~~~D 360 (700)
T KOG1156|consen 301 EE--LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKL----VTSYQHSLSGT-------GMFNFLD 360 (700)
T ss_pred ch--hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHH----HHHHHhhcccc-------cCCCccc
Confidence 11 2233333444444555443 2223333332111111 11110 00111111100 0000000
Q ss_pred HHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 448 EMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 448 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
.= .--+|.. .|+..+...+-+.|+++.|..+++... +-.|+ ++-|..-...+...|.+++|..++++.. .
T Consensus 361 ~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 361 DG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 00 0013443 334455566677777777777777775 44677 6667666777777777777777777665 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHH--HHHHHHHhcCCcHHHHHHH
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS-------GSYV--LMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~--~l~~~~~~~g~~~~a~~~~ 583 (648)
.||..+=..-..-..+..+.++|.++..+..+.+.+-. -.|. -=+.+|.+.|+|..|.+=+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 34443333444455566777777777766665442110 0122 2244566666666665544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-05 Score=80.24 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=105.0
Q ss_pred HHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 330 GYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
+-....++.+|+.+++.++.. +.-..-|..+...|+..| +++.+.++|-.. ..++--|++|.+.|+++
T Consensus 741 aai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~--dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKG--DFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccch--hHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455556666655555431 111223444555555555 556555555321 12344555666666666
Q ss_pred HHHHHHhhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 410 ESQRVFNETQEK--SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 410 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+|.++-.+...| ....|-+-..-+-.+|++.+|.++|-... .|+. .+..|-+.|..++.+++..+-
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~--- 876 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH--- 876 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh---
Confidence 666665555444 23345444555555666666655553321 2332 234455555555555554432
Q ss_pred cCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 488 YHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 488 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.|+ ..+...+..-|...|++.+|+.-|-+.. -|.+-++.|...+-++.|-++. ...+..+..-.+.
T Consensus 877 ---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria---ktegg~n~~k~v~ 944 (1636)
T KOG3616|consen 877 ---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA---KTEGGANAEKHVA 944 (1636)
T ss_pred ---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH---hccccccHHHHHH
Confidence 222 3344445555556666666655444322 2444555555555554443332 2233444444444
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 006364 566 MSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~ 585 (648)
..++-.-.|+ .|.+++++
T Consensus 945 flwaksiggd--aavkllnk 962 (1636)
T KOG3616|consen 945 FLWAKSIGGD--AAVKLLNK 962 (1636)
T ss_pred HHHHHhhCcH--HHHHHHHh
Confidence 4444443343 45555553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-06 Score=85.16 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
++..+...|.+.|++++|+++++..++. .|+ ++.|..-...|-+.|++++|.+.++... ..-|-.+=+.....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3445556677788888888888877644 677 7778888888888888888888877765 223333444455667
Q ss_pred HHcCCHHHHHHHHHHHHhcCC--CC-------chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 537 RIHGNVEMGERIADALMKMEP--AG-------SGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+.|++++|++.+....+.+. .. .....-.+++|.+.|++..|.+.+..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 778888888888877765542 11 112345677788888888877766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-05 Score=76.98 Aligned_cols=442 Identities=12% Similarity=0.024 Sum_probs=256.3
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC----
Q 006364 45 ALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---- 120 (648)
Q Consensus 45 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 120 (648)
+.++....++-|...|..+--++...|+++.+-+.|++....- ......|+.+-..|..+|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 4445555566788888888888888999999999999887543 34456788888899999999999999887643
Q ss_pred CC-cchHHHHHHHHHcCCCChHHHHHHHHHHHHC------CCCCChhhHHHHHHHhc----CCCC-------hhHHHHHH
Q 006364 121 KD-SVSWNAILSGYTQDGDYGVEAILALIEMMRK------GLRLDHVSFTSAASACG----HEKN-------LELGKQIH 182 (648)
Q Consensus 121 ~~-~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~----~~~~-------~~~a~~~~ 182 (648)
|+ ...+-..-..|.+.-+..+++++.-.+.... .+.|- .|..+--+|+ .... ..++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 32 2223223334444332666777666655541 12222 2222222221 1111 12233333
Q ss_pred HHHHHhc-CCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 006364 183 GVSIKMG-YGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGL 261 (648)
Q Consensus 183 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 261 (648)
+..++.+ -.|++..|-++ -|+.. ++.+.|++..++...-+-.-+...|..+
T Consensus 468 e~av~~d~~dp~~if~lal--q~A~~--------------------------R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLAL--QYAEQ--------------------------RQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHhcCCCCchHHHHHHH--HHHHH--------------------------HhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3333322 12222222211 12222 5566677777777766556677788888
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHH
Q 006364 262 IHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAV 341 (648)
Q Consensus 262 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (648)
.-.++..+++..|+.+.+.....- ..|......-++.-...++.+++......+.. .|... .+....++-...+
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~ 593 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLL 593 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhh
Confidence 888888999999999887665421 11111111222333345677766655443321 01100 0111122222233
Q ss_pred HHHHHhHh--CCCC-CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 342 QAFFGVIK--ESKP-NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 342 ~~~~~m~~--~~~p-~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
++...+.- ..+. ...++..+..-..... ...| .+..+..+...
T Consensus 594 ~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--------------~~~~--------------------se~~Lp~s~~~ 639 (799)
T KOG4162|consen 594 RLKAGLHLALSQPTDAISTSRYLSSLVASQL--------------KSAG--------------------SELKLPSSTVL 639 (799)
T ss_pred hhhcccccCcccccccchhhHHHHHHHHhhh--------------hhcc--------------------cccccCccccc
Confidence 33333322 1111 1112211111111000 0000 00011111111
Q ss_pred CCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 419 QEKS------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 419 ~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
+.|+ ...|......+.+.++.++|...+.+.... ..-....|......+...|..++|.+.|.... -+.|
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP 715 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDP 715 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCC
Confidence 1121 235667777888888889998888887663 23334555555566778899999999998875 6789
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHH--HHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 493 S-PDHYSCMVDMLGRVGRLEEAEE--LVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 493 ~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+ +....++..++.+.|+..-|.. ++..+. .+.+...|..++..+.+.|+.+.|...|.-+.++++.+|.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8 8899999999999998777766 777765 4567889999999999999999999999999999877653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-05 Score=80.80 Aligned_cols=258 Identities=9% Similarity=-0.010 Sum_probs=154.3
Q ss_pred HHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH---HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 330 GYAQNGLSLAAVQAFFGVIKESKPNAYTFGS---VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~---ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
.+...|++++|.+.+++.....+.+...+.. ........+ ....+...+.. .....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSG--MRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhccccc--CchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556677777777777776644444444332 111111223 33344443333 11111222334445667788899
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCcHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGV-RPDS--ITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
++++|.+.++...+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999987664 3566778888889999999999999988876421 2332 2455677778889999999999
Q ss_pred HHHhHHhcCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---Hhh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHY-S--CMVDMLGRVGRLEEAEEL---VGQ---I-PGGPGLSVLQSLLGACRIHGNVEMGERIAD 550 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (648)
++.........+..... + .+...+...|....+.++ ... . +.............++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99875331111222111 1 223333444433333222 111 1 111112222345667788899999999988
Q ss_pred HHHhcCC---------CCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 551 ALMKMEP---------AGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 551 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+....- .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8765321 134566788888999999999999998776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-06 Score=75.15 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=152.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 470 (648)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++... +.|+ ....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 345667788999999999999887754 455788889999999999999999999887 4554 4556666666788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|.+++|.+.|+..... ..-|. ..+|..++-+..++|+++.|.+.+++.. .+..+.....+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88999999999998776 33333 7788888888899999999999988765 23345566777888888999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+++.....+.......+.+.+-...|+-+.+.+.-..+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999888888888888888888889998888877666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00012 Score=75.12 Aligned_cols=376 Identities=12% Similarity=0.098 Sum_probs=209.3
Q ss_pred ChhhHHHHHHH--hhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC-----------C
Q 006364 56 DAVTYSTALSF--CLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK-----------D 122 (648)
Q Consensus 56 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~ 122 (648)
|..|--.++.. |...|+.+.|.+-.+.+.. ..+|..|.+++.+..+++-|.-.+..|.+. |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45555555543 5667888888777666543 356888888888888888887777777641 1
Q ss_pred cchHHHHHHH-HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHH
Q 006364 123 SVSWNAILSG-YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLM 201 (648)
Q Consensus 123 ~~~~~~li~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 201 (648)
..--.+-..+ -...| ..++|..+|++-++ |-.|=+.|-..|.+++|.++-+.--+..+. .+|-...
T Consensus 799 ~~e~eakvAvLAieLg-MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELG-MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CcchhhHHHHHHHHHh-hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 1111111111 23445 66677777766554 233344455666777776665533222221 2233333
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 006364 202 STYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC 281 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 281 (648)
.-+-..++.+.|++.|++...+--... .|+..++.......+.+ .|...|...-.-+-..|+.+.|..+|...
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~-rmL~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVF-RMLKEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHH-HHHHhChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 334445667777777765543211111 11112222222222222 24455555555667788899998888876
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHH
Q 006364 282 IKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSV 361 (648)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 361 (648)
.+ |-+++...+-.|+.++|-++-++- .|......+.+.|-..|++.+|+..|.+.+ +|...
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--------afsnA 999 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ--------AFSNA 999 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------HHHHH
Confidence 65 456777777888888888877654 345556667788888888999988887764 34444
Q ss_pred HHHhccCc-------------hhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--------
Q 006364 362 LNAVGAAE-------------DISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------- 420 (648)
Q Consensus 362 l~a~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 420 (648)
|+.|-..+ ..+.-.+-.+|++ .|. -...-+..|-|.|.+.+|+++-=.-.+
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 44433222 1133333333332 221 122344568888888888876322221
Q ss_pred ------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH----------CC----------------CCCCHH----HHHHH
Q 006364 421 ------KSEFAWTAIISALARHGDYESVMNQFKEMEN----------KG----------------VRPDSI----TFLSV 464 (648)
Q Consensus 421 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g----------------~~p~~~----t~~~l 464 (648)
.|+...+.-..-++.+.++++|..++-..++ .| -.|+.. ....+
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 2555555555556666666666665543321 11 113332 23445
Q ss_pred HHHhcccCcHHHHHHHHHHh
Q 006364 465 LTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m 484 (648)
...|.+.|.+..|-+-|.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhccchHHHHHHHhhh
Confidence 56677777777777666655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-05 Score=78.63 Aligned_cols=213 Identities=12% Similarity=0.105 Sum_probs=133.0
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCCh----------hHHHHH
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSE----------FAWTAI 429 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l 429 (648)
.+.++..+.. ++..+.+-+....... .+..-++....+|...|.+......-+...+..- .....+
T Consensus 229 ~lgnaaykkk--~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKK--DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444444444 5556666555555544 4455555666666666666655554443332211 122224
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 508 (648)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|. ..-...-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4466667788888888888766555554332 2233444444444332 34555 222222366677888
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 509 RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 509 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
++..|+..+.++. .+.|...|..-.-++.+.|++..|..-.+..++++|+....|..-+.++....+|++|.+.+++-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765 33456677777778888888888888888888888888888888888888888888888888655
Q ss_pred hh
Q 006364 587 KS 588 (648)
Q Consensus 587 ~~ 588 (648)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 43
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=82.19 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=136.0
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD-SDPIVGSALLDM 401 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 401 (648)
....+.+++...|+++.++ .++..+..|.......+...+.... +-+.+..-+......... .+..+......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~--~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPS--DKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTST--THHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3344556677777665443 3333333555555544444444323 333333333222222222 333444444556
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCcHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG----RNGMIHKG 477 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a 477 (648)
|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++. -...+.+|
T Consensus 112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHH
Confidence 77788888888888765 4566667778888889999999999988876 3344 33344444432 22358888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 006364 478 RHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV-EMGERIADALMK 554 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 554 (648)
..+|+++.++ ..+++.+.+.+..++...|++++|.+++.+.. .+.++.++..++......|+. +.+.+...++..
T Consensus 187 ~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888654 34667778888888888888888888877654 223556666677776777766 667778888777
Q ss_pred cCCCCc
Q 006364 555 MEPAGS 560 (648)
Q Consensus 555 ~~p~~~ 560 (648)
..|.++
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-05 Score=74.93 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=182.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHH
Q 006364 297 ITMYARFESMQDSEKVFDELSCREII--SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLK 374 (648)
Q Consensus 297 i~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~ 374 (648)
|.+-.....+.+|+.+++.+..+++. -|..+..-|...|+++.|.++|.+. ..++-.+..|.+.| .++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~--kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAG--KWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccc--cHH
Confidence 44556677888899999888876553 4677778899999999999998654 23566788889999 888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 375 HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
.+.++-.. -.|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+.+.++-
T Consensus 809 da~kla~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~----- 876 (1636)
T KOG3616|consen 809 DAFKLAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH----- 876 (1636)
T ss_pred HHHHHHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----
Confidence 88776543 345566667777777778899999999999999888875 467889999999988887654
Q ss_pred CCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC----CCHHH
Q 006364 455 RPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG----PGLSV 528 (648)
Q Consensus 455 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 528 (648)
.|+ ..|...+..-+...|+...|...|-+.. -|..-+++|...+.|++|.++-+.-... .-...
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 333 3566777788888999999998887652 2566788888899999999887653311 11112
Q ss_pred HH------HHHHHHHHcCCHHHHHHH------HHHHHh---c--CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 529 LQ------SLLGACRIHGNVEMGERI------ADALMK---M--EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 529 ~~------~l~~~~~~~g~~~~a~~~------~~~~~~---~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|. +.+..+.++|-.+.|... |+.+.+ + ...-+..+..++--+...|++++|.+.+-+..+
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 21 122233445544444321 122221 1 123456788888889999999999877655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=80.21 Aligned_cols=179 Identities=10% Similarity=0.033 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SE---FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----IT 460 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 460 (648)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..++...|++++|+..|+++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344556666667777777777777776543 2 11 35566667777777777777777777663 2321 13
Q ss_pred HHHHHHHhccc--------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 461 FLSVLTVCGRN--------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 461 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
+..+..++... |++++|.+.|+.+.+. .|+ ...+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33444444433 6677777777777644 444 2222222111 0000000 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+...+...|+++.|...++.+.+..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999987765 478999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.9e-07 Score=75.86 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...+++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555554 44553 4455667778888888888888876 44665 7788888888888888888888888765
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 522 -GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 522 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
.+.++..|..+..++...|+.++|...+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888777776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00022 Score=71.45 Aligned_cols=400 Identities=13% Similarity=0.111 Sum_probs=235.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCC-----CchhhHHHhc---CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 006364 198 NVLMSTYSKCEVTGDANKVFRRMHDR-----NVISWTTMIS---MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGN 269 (648)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 269 (648)
..++..|- .+++...++..+.+..+ +....-.+.- |+.++|....+.-....+ -+.+.|..+--.+-...
T Consensus 12 ~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhh
Confidence 34444443 35555555555554432 2222211111 888888888776655322 23444544444455667
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 270 LVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFG 346 (648)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (648)
++++|...|....+.+ +.|..++..+.-.=++.|+++..........+ .....|..+..++...|+...|..+++.
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765 45566666666556666777766655554432 2447888888899999999999999999
Q ss_pred hHh--CCCCCHHHHHHHHHHhcc------CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 347 VIK--ESKPNAYTFGSVLNAVGA------AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 347 m~~--~~~p~~~~~~~ll~a~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
..+ .-.|+...+......+.+ .| ..+.+.+.+...... +......-..-.+.+.+.+++++|..++..+
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g--~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAG--SLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 888 346777777655544332 23 444444443332221 2222233345667788899999999999988
Q ss_pred CCC--ChhHHHH-HHHHHHhCCChHHHH-HHHHHHHHCC---CCCCHHH--------HHHHHHHhcc----cC-------
Q 006364 419 QEK--SEFAWTA-IISALARHGDYESVM-NQFKEMENKG---VRPDSIT--------FLSVLTVCGR----NG------- 472 (648)
Q Consensus 419 ~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t--------~~~ll~a~~~----~g------- 472 (648)
..+ |...|.- +..++.+-.+.-+++ .+|....+.- ..|-... +...+.-|.+ .|
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 764 4444444 444554344444444 6676666531 1111111 1111111110 00
Q ss_pred ------cHHH-------HHHHHHHhHHh--c------CC-CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH
Q 006364 473 ------MIHK-------GRHLFDSMLKD--Y------HI-EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLS 527 (648)
Q Consensus 473 ------~~~~-------a~~~~~~m~~~--~------~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 527 (648)
+..+ +..+...+... + .. .|+ ..++-.++..+-+.|+++.|...++... ..|+..
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 1000 11111111100 0 01 344 4456667888889999999999998866 345543
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc-----cCCceeEEE
Q 006364 528 -VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR-----KEVGFSWAD 601 (648)
Q Consensus 528 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~s~~~ 601 (648)
.|-.-...+...|+++.|...++.+.+++..|...-..-++-..++.+.++|.++.......|.. .+..|.|..
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 44455567788899999999999999998777666656777788888999999988887666541 123466766
Q ss_pred Ec
Q 006364 602 VG 603 (648)
Q Consensus 602 ~~ 603 (648)
+.
T Consensus 486 ~E 487 (700)
T KOG1156|consen 486 LE 487 (700)
T ss_pred Hh
Confidence 55
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=83.39 Aligned_cols=242 Identities=11% Similarity=0.051 Sum_probs=156.0
Q ss_pred HHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 331 YAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
+.-.|++..++.-.. ... ....+.....-+.+++...| ..+. +...+.+.. .|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg--~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALG--QYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT---HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcC--ChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 344566666665554 222 11122333444555665555 4332 333333333 566665555555554445566
Q ss_pred HHHHHHhhcC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 410 ESQRVFNETQ-EK----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 410 ~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
.+..-+++.. ++ +....-.....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 32 2222222334566789999999988642 35566677888899999999999999999
Q ss_pred HHhcCCCCChH---HHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 485 LKDYHIEPSPD---HYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 485 ~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
. .+..|.. ...+.+..+.-.+.+++|.-+|+++.. .+++.+++.+..++...|++++|+++++.+++.+|.+
T Consensus 158 ~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 Q---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred H---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 3455522 223333333333579999999999764 4778888889999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCc-HHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDW-EMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 588 (648)
+.+...++-+....|+. +.+.+++++++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 668889988875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-06 Score=75.97 Aligned_cols=116 Identities=9% Similarity=0.101 Sum_probs=88.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH-HHcCC--HHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC-RIHGN--VEM 544 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~ 544 (648)
.++.+++...++...+. .|+ ...|..+...|...|++++|...+++.. .+.+..++..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 56667777777766543 565 7788888888888888888888887754 334666777777764 56666 488
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
|.++++++++.+|+++.++..++..+...|++++|...++++.+.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00014 Score=74.49 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=33.0
Q ss_pred CcchHHHHHH--HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHH
Q 006364 122 DSVSWNAILS--GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSI 186 (648)
Q Consensus 122 ~~~~~~~li~--~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (648)
|..|-..++. -|..-| +.+.|++-.+-++ +...|..+.+.|.+..+++-|+-.+..|.
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 4444444442 344556 6666665555444 23456666666666666666666665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-08 Score=59.23 Aligned_cols=33 Identities=42% Similarity=0.599 Sum_probs=25.7
Q ss_pred CCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 87 GLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 87 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677778888888888888888888888877774
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=86.09 Aligned_cols=213 Identities=8% Similarity=-0.011 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
++..|.-.|+..++.. +-+...|--|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+..++.
T Consensus 300 ~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred CchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444443332 22333444444444555555556666655443 2556666777788888888888888887
Q ss_pred HHHCCCC-----C---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 449 MENKGVR-----P---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 449 m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
-+....+ + +..+=.. ..+.+........++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+.|+.+
T Consensus 379 Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 379 WIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred HHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 7653211 0 1000000 2333444556667777777766676688889999999999999999999999987
Q ss_pred C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 521 P-GG-PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 521 ~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
. .+ .|...||.|+..+....+.++|+.+|.+++++.|.-..+...|+-.|...|.+.+|.+.+-...
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6 34 5678999999999999999999999999999999999999999999999999999999886543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00025 Score=70.30 Aligned_cols=405 Identities=13% Similarity=0.053 Sum_probs=214.9
Q ss_pred HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHH--HHHH--Hh
Q 006364 131 SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVL--MSTY--SK 206 (648)
Q Consensus 131 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~ 206 (648)
.-+...| ++++|.+....++..+ +-|...+..=+-+..+.+.++.|..+.+.- +. ..+++.. =.+| .+
T Consensus 20 n~~~~~~-e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNG-EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccch-HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHHH
Confidence 3444556 6777777777776644 223344555555566666666666433321 10 0111111 2222 23
Q ss_pred CCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 006364 207 CEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPND-VTFIGLIHAISIGNLVKEGRMIHGLCIKTN 285 (648)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 285 (648)
.++.|+|...++ |..++. .+...-...|.+.++++++..+|..+.+.+
T Consensus 92 lnk~Dealk~~~-------------------------------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 92 LNKLDEALKTLK-------------------------------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cccHHHHHHHHh-------------------------------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444555444443 223322 244444556778888888888888887766
Q ss_pred CCCC-chhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHH---HHHHhcCCcHHHHHHHHHhHh--------CCCC
Q 006364 286 FLSE-PSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALI---SGYAQNGLSLAAVQAFFGVIK--------ESKP 353 (648)
Q Consensus 286 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~p 353 (648)
.+.. ...-..++.. +..-.+. +.+..+.....+|..+. ..++..|++.+|++++....+ +..-
T Consensus 141 ~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 141 SDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred CchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4321 1111112111 1111121 34444444344554443 356678999999999988732 1111
Q ss_pred --CHHH-----HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhhcCCHH-HHHHHHhhcCCC-
Q 006364 354 --NAYT-----FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSD---PIVGSALLDMYGKRGSIF-ESQRVFNETQEK- 421 (648)
Q Consensus 354 --~~~~-----~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~- 421 (648)
+... -..+.-.+-..| +.+++..++..+++....-. ....|.|+.+-.-..-++ .++..++.....
T Consensus 216 eEeie~el~~IrvQlayVlQ~~G--qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQG--QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 1111 112233344567 88999999999988765322 223344443322111111 233333322211
Q ss_pred -------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc--ccCcHHHHHHHHHHhHH
Q 006364 422 -------------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG--RNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 422 -------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 486 (648)
..+..|..+-.+. .+..+.+.++..... +..|. ..+..++..+. +...+.++.+++....+
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~-tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALF-TNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1122222222222 223344443333221 22333 44555555553 22357788888887754
Q ss_pred hcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHh--------hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 487 DYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVG--------QIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 487 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
. .|. ..+--.++......|+++.|.+++. .++ ..-.+.+..++...+.+.++...|..++..++.-
T Consensus 370 ~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 370 G---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred c---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 4 454 5566777888999999999999988 333 2334455666777777878777788877777642
Q ss_pred ----CC---CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 556 ----EP---AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 556 ----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+ .-...+..++..-.+.|+-++|..+++++.+
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 12 2233455666666778999999999998876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-05 Score=77.49 Aligned_cols=466 Identities=14% Similarity=0.059 Sum_probs=247.0
Q ss_pred HHHHHHHhCCCCC-cchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCC
Q 006364 79 LHSLIVKFGLDSE-VYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKG 154 (648)
Q Consensus 79 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g 154 (648)
++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .|..++......|++.. .++.|..+.-..-+..
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhc
Confidence 3333333333343 35677888888888888899999987765 46778889999999999 9999998843322211
Q ss_pred -CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHH--
Q 006364 155 -LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTM-- 231 (648)
Q Consensus 155 -~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-- 231 (648)
...-...|...--.+...++...+..-+....+.. +-|...|..|..+|..+|++..|.++|.+...-++.+|-.-
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence 00011112222223556677777777777766654 45778899999999999999999999988776444433221
Q ss_pred ---hc---CChhhHHHHHHHHHHCC------CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 232 ---IS---MNREDAVSLFKEMRLDG------VCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITM 299 (648)
Q Consensus 232 ---i~---g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 299 (648)
+. |.+.+|+..+......- ..--..++..+...+...|-...+..+++.-++. ..++++..
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~-------f~~~l~h~ 708 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES-------FIVSLIHS 708 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHh
Confidence 11 77777777766654320 0001111111222222222222222222222211 00111111
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchh-hHHH-HH
Q 006364 300 YARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDI-SLKH-GQ 377 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~-~~~~-a~ 377 (648)
. ..+...|-.+- .|...|...... .|+......+..-.-..+.. ..+- ..
T Consensus 709 ~-----------------~~~~~~Wi~as----------dac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~L 760 (1238)
T KOG1127|consen 709 L-----------------QSDRLQWIVAS----------DACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFL 760 (1238)
T ss_pred h-----------------hhhHHHHHHHh----------HHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHH
Confidence 0 00111111111 111111111100 12221111111111111100 0000 00
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhh----cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGK----RG----SIFESQRVFNETQ---EKSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
..-.......+..++..|..|+.-|.+ +| +...|...+.... ..+..+||.|.-. ...|.+.-|...|
T Consensus 761 g~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCf 839 (1238)
T KOG1127|consen 761 GYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCF 839 (1238)
T ss_pred HHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhh
Confidence 000000111112223344334333333 11 2234555555433 3567778877665 5556777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC-----
Q 006364 447 KEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQI----- 520 (648)
Q Consensus 447 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 520 (648)
-+-... .+-+..+|..+...|....+++.|...|.... .+.|+ ...|--........|+.-++..+|..-
T Consensus 840 Iks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 840 IKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 665543 23445677777777888888888888888775 56775 666766666666778777777777651
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 521 P--GGPGLSVLQSLLGACRIHGNVEMG----------ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 521 ~--~~~~~~~~~~l~~~~~~~g~~~~a----------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
. .-|+...|.+........|+.+.- --+.++.....|+...+|...+......+.+.+|.+...+.
T Consensus 916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 225555555544444455554433 33455555667888888888888888777777776665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.001 Score=75.81 Aligned_cols=86 Identities=6% Similarity=-0.136 Sum_probs=38.5
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCC------CC--chhHHHHHHHHHhcCChHHHHHHHhhcCC----CCc----ccHHHH
Q 006364 264 AISIGNLVKEGRMIHGLCIKTNFL------SE--PSVCNCLITMYARFESMQDSEKVFDELSC----REI----ISWNAL 327 (648)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~l 327 (648)
.+...|+++++...+......--. +. ......+...+...|+++.|...+++... .+. ..++.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 344556666666666655432100 00 01111222334455666666655554321 111 122333
Q ss_pred HHHHHhcCCcHHHHHHHHHhHh
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~ 349 (648)
...+...|++++|...+.+...
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555666666666555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.7e-06 Score=73.12 Aligned_cols=293 Identities=12% Similarity=0.144 Sum_probs=172.2
Q ss_pred CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc--ccHHH-
Q 006364 250 GVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI--ISWNA- 326 (648)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~- 326 (648)
|+....--+.+++..+.+..+++.+.+++....+.. +.+....+.|..+|....++..|-..++++...-+ .-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456667777777777777777776655543 22445566677777777777777777777653222 22221
Q ss_pred HHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 327 LISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
-...+-+.+.+.+|+.+...|... |+...-..-+.+..+ ...+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIk-----------------------------------Yse~ 126 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIK-----------------------------------YSEG 126 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHh-----------------------------------cccc
Confidence 123445566677777776666431 111111111111111 1234
Q ss_pred CHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 407 SIFESQRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMEN-KGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 407 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+. ..+.|+++.|+++..++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEI 204 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 4555555555555 24444444555555566666666666666555 34443 344544443 33445666666666665
Q ss_pred HHhcCCC-------------CC--------hHH-------HHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHH
Q 006364 485 LKDYHIE-------------PS--------PDH-------YSCMVDMLGRVGRLEEAEELVGQIP----GGPGLSVLQSL 532 (648)
Q Consensus 485 ~~~~~~~-------------p~--------~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l 532 (648)
+++ |++ || .-+ +|.-...+.+.|+++.|.+.+-.|| ...|+.+...+
T Consensus 205 ieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 205 IER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 543 321 11 122 3333344568899999999999998 33677776554
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
.-. -..++...+.+-+..+++++|-.+.++..+.-+|++..-++-|..++-
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 322 234556667777788889999999999999999999999999998874
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00013 Score=71.58 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=143.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC------chhHHHHHH
Q 006364 326 ALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS------DPIVGSALL 399 (648)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li 399 (648)
.+....-+..++..|++.+.....-. .+..-++..-.++...+ ....+...-...++.|-.. =......+.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555411 22223333333344444 3333333333332222110 011122244
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHH
Q 006364 400 DMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 478 (648)
.+|.+.++++.|...|.+...+... -....+....++++...+...- +.|... -.-.-...+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 5777888899999988875432111 1122333445666665555544 344431 1222255677889999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
..|.++++. .|+ ...|....-+|.+.|.+.+|++-.+... .++....|..-+.++....+++.|.+.|.+.++.
T Consensus 379 ~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 379 KHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999866 576 8899999999999999999988766544 3344555666666777788999999999999999
Q ss_pred CCCCchhHHHHHHHHHhc
Q 006364 556 EPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~ 573 (648)
+|.+...-..+.+++...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999988888888887753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00016 Score=75.94 Aligned_cols=519 Identities=11% Similarity=0.004 Sum_probs=247.5
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC---cchHHHH--HHHH
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD---SVSWNAI--LSGY 133 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l--i~~~ 133 (648)
.|..|-..|+...+...|.+.|+...+.. ..+...+....+.|++..+++.|..+.-...+.+ ...||-. --.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 55666666666667778888888877664 4566778889999999999999988854433321 1122222 2234
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhCCChHH
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHV-SVGNVLMSTYSKCEVTGD 212 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 212 (648)
.+.+ +..+|+.-|+...+..+ -|...|..+..+|.+.|.+..|.++|...... .|+. ..---...+-+..|++.+
T Consensus 573 Lea~-n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4455 66777777777766432 25567777888888888888888887665443 2322 111112223445566777
Q ss_pred HHHHHhcCCCC---------Cc-hhhHH-----HhcCC-------hhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCc
Q 006364 213 ANKVFRRMHDR---------NV-ISWTT-----MISMN-------REDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNL 270 (648)
Q Consensus 213 A~~~~~~~~~~---------~~-~~~~~-----li~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 270 (648)
|...+..+... +. .++-. .+.|- ++++++.|.-.......-+...|..+-.+|...-.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 66666554320 00 00000 00022 22222222222222211222222222222110000
Q ss_pred hH------HHHHH-HHHHHHhcC--------------------CCCchhHHHHHHHHHh----cC----ChHHHHHHHhh
Q 006364 271 VK------EGRMI-HGLCIKTNF--------------------LSEPSVCNCLITMYAR----FE----SMQDSEKVFDE 315 (648)
Q Consensus 271 ~~------~a~~~-~~~~~~~~~--------------------~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~ 315 (648)
.+ ....+ +.+....+. ..+...|..|+..|.+ +| +...|...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 00000 001111111 1112222222222222 11 11233444433
Q ss_pred cC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCch
Q 006364 316 LS---CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDP 392 (648)
Q Consensus 316 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 392 (648)
-. ..+..+||.|.-. ...|.+.-|...|-+-....+....+|..+--.|.... +.+.+...+.......+ .+.
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~--d~E~A~~af~~~qSLdP-~nl 884 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ--DFEHAEPAFSSVQSLDP-LNL 884 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc--cHHHhhHHHHhhhhcCc-hhh
Confidence 22 2344555555433 33344444444443333333445555555555555555 66666666665554321 122
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhc-----CC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHH---------CCCC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNET-----QE---KSEFAWTAIISALARHGDYESVMNQFKEMEN---------KGVR 455 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 455 (648)
..|--........|+.-++..+|..- .+ ++..-|-+...-..++|+.++-+..-+..-. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 22222222223345555555555431 11 2333333333344455555444433333221 1233
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYS----CMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
-+...|........+.+.+..|.+...+.+.-...+-+...|+ .....++..|.++.|..-+...+...+..+..+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 3345666666666666666666666555432212223333444 334455566777777666665554444444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGS---YVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
-+.. .-.++++.+...|++++.+...+... ...++......+.-+.|...+-+..
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 3333 44678888888888888776544443 3334444455566666666554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.9e-08 Score=57.00 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 489 HIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 489 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666663
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.6e-06 Score=87.80 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
++..+-.|.....+.|.+++|..+++...+ +.||. ..+..+..++.+.+.+++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777788888888888888888877 56764 4556677777888888888888887763 4776 777777
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+..++.+.|++++|..+|++.. ..| +..+|..+..++...|+.+.|..+|+++++...+....|..+. ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 7888888888888888888765 233 3667778888888888888888888888877655544443322 2222
Q ss_pred HHHHHHHHHhhCCCccCCceeEEEE
Q 006364 578 MVAILRKGMKSKGVRKEVGFSWADV 602 (648)
Q Consensus 578 ~a~~~~~~m~~~~~~~~~~~s~~~~ 602 (648)
.-..+++++.-.+.......+.+-+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeH
Confidence 3344555554444444444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0011 Score=65.08 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=105.2
Q ss_pred cHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCHHHHHHH
Q 006364 337 SLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS-DPIVGSALLDMYGKRGSIFESQRV 414 (648)
Q Consensus 337 ~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 414 (648)
.+...+.+++... ...--..+|...++...+.. .++.|+.+|....+.+..+ ++.+.++++..||. ++..-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e--GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE--GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh--hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 4455555666555 22222345566666666666 6777777777777766666 66777777777664 566777777
Q ss_pred HhhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 415 FNETQE--KS-EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 415 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
|+.-.+ +| ..--...+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 775443 23 333345566666667777777777777776566553 5677777666777777777777666655544
Q ss_pred --CCCChHHHHHHHHHHhhcCC
Q 006364 490 --IEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 490 --~~p~~~~~~~l~~~~~~~g~ 509 (648)
..|...+-..+++-|.-.+.
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred hhhcCCCChHHHHHHHHhhccc
Confidence 44443444445555554444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=73.57 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=90.7
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
.+++... .+.|+. +..+...+...|++++|...|+... .+.+...|..+..+|...|+++.|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455554 345653 5567888999999999999999865 45678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|.++..+..++.++...|++++|...+++..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=71.29 Aligned_cols=157 Identities=8% Similarity=0.105 Sum_probs=121.0
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 398 LLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
-+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++..+. -+.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888888766654433221 0122356778888888887774 245678888999999999999999
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHH-hhcCC--HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSCMVDML-GRVGR--LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
...|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+..++..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999987 45786 88888888864 67777 599999999876 334677888899999999999999999999
Q ss_pred HHhcCCCCchhHHHH
Q 006364 552 LMKMEPAGSGSYVLM 566 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l 566 (648)
++++.|++..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998877665444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=86.42 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=169.0
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQEK--------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
+.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445567777888888899999999999876642 3458999999888889888999999999873 333467
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP---GLSVLQSLLGAC 536 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 536 (648)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.+..+-+.|..++.++. .-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 457789999999999999999999988754 223 355566677777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
.++|+.+.+..+|+.++.-.|.....|..+++.-.+.|+.+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999998877654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-06 Score=82.42 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=99.8
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
++|--..-..+.+.+.+.|-...|..+|+... .|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34444455556666666666677766666543 456666666666666666666666555 35666666666666
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh-CC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQ-IP-GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.....-+++|+++.+....+ .-..+.....+.++++++.+.++. +. .+-...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 65555566666665544221 111112222234555555555443 22 122344455555555555555555
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.++|-+...++|++...|..++-+|.+.|+..+|...+++..+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555555544433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00035 Score=69.95 Aligned_cols=265 Identities=14% Similarity=0.085 Sum_probs=165.9
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHH-HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHH--
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGS-VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGS-- 396 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~-ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 396 (648)
..|..+...+...|+.+++...+....+ ...++...... ....+...+ +.+.+..++....+.. +.+...+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG--DLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3455555666667777777777766655 22233322222 122344566 8999999999988764 33333433
Q ss_pred -HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 397 -ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 397 -~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
.........|....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223356666777776653322 23344556678899999999999999999852 334566778888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHHHcCCHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP--G-LSVL-Q--SLLGACRIHGNVE 543 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~-~~~~-~--~l~~~~~~~g~~~ 543 (648)
++++|..+++...+.....|+ ...|..+...+...|++++|..++++.. ..| . .... + .++.-....|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998754222334 2456678899999999999999999864 222 1 1111 1 2333444555544
Q ss_pred HHHHH---HHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 544 MGERI---ADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 544 ~a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+.+. ........|.. ...-...+.++...|++++|.+.++.++...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44433 22211111221 2223367777888999999999999887644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00016 Score=66.58 Aligned_cols=184 Identities=8% Similarity=0.059 Sum_probs=127.8
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
.+.-.|+...|+.....+.+ -|+..|..-..+|...|++..|+.=++..-+.. .-+..++.-+-.-+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 34456788888888776664 377778888888999999988887776665531 22344555555566777888888
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHH---H---------HHHHhhcCCHHHHHHHHhh-CCCCCCH-----HHHHHHHHHHHH
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSC---M---------VDMLGRVGRLEEAEELVGQ-IPGGPGL-----SVLQSLLGACRI 538 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~---l---------~~~~~~~g~~~~A~~~~~~-~~~~~~~-----~~~~~l~~~~~~ 538 (648)
+...++.. .+.|| ...|.. | +....+.++|-++++-.+. |...|.. ..+..+-.+++.
T Consensus 243 L~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 243 LKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 88777775 56777 222221 1 1123345666666665554 3344542 223344455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
-|++.+|.+.-.+.++++|+|..++..-+.+|.-...+++|+.=++...+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999988877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=69.26 Aligned_cols=100 Identities=8% Similarity=-0.035 Sum_probs=87.0
Q ss_pred CCC-CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 489 HIE-PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 489 ~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
++. ++ ....-.+...+...|++++|.++|+... .+-+..-|-.|...|...|+++.|..+|.++..++|++|.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 44 5555666777889999999999999765 4567788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+|...|+.+.|.+.|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999986653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00015 Score=70.37 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL-SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
+--....+...|++++|+..++.+... .||...|. .....+...++.++|.+.++.+... .|+ ....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333344455678888888888888774 45554444 4455678888888888888888744 777 6666677888
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
|.+.|+..+|...++... .+.|+..|..|..+|...|+..++..+. +..|+..|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 888888888888888765 4467778888888888888887766663 446777888888888
Q ss_pred HHHHHhhCC
Q 006364 582 LRKGMKSKG 590 (648)
Q Consensus 582 ~~~~m~~~~ 590 (648)
.....+++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 887776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=72.82 Aligned_cols=183 Identities=12% Similarity=0.008 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Chh--
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEF-- 424 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-- 424 (648)
......+......+...+ +.+.|...+..+.+..... ....+..+...|.+.|++++|...++.+.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG--DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 445667777888888999 9999999999988765321 124667788999999999999999998864 2 222
Q ss_pred -HHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 425 -AWTAIISALARH--------GDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 425 -~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
++..+..++.+. |+.++|++.|+++... .|+.. .+..+... . .. .... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~------~~~~---------~ 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YL------RNRL---------A 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HH------HHHH---------H
Confidence 455666666654 7889999999999874 45542 22211111 0 00 0000 0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP----GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.....+...+.+.|++++|...++... ..| ....|..++.++...|+.++|...++.+....|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 112356677888999999998887754 122 356788889999999999999998888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=69.57 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
...|+ ......+...+...|++++|.+.++... .+.+...|..+...+...|+++.|...++++.+.+|.++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34564 5556677777788888888888887754 33466777778888888888888888888888888888888888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|...+++..+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888876654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=74.70 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=172.2
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh
Q 006364 286 FLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV 365 (648)
Q Consensus 286 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~ 365 (648)
++|--..-..+...+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||+..|..+....
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 4555555667888999999999999999987 4788899999999999999998887776 788999999998888
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHH
Q 006364 366 GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESV 442 (648)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 442 (648)
.... -.+.|.++.+..... .-..+.....+.+++.++.+.|+.-.+- -..+|-....+..+.++++.|
T Consensus 468 ~d~s--~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPS--LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChH--HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7776 788888887665432 1122222233478999999999865443 456888888999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 443 MNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 443 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
.+.|..-.. ..||. ..|+.+-.+|.+.|+-.+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999887 56774 78999999999999999999999998754 4 3335566667777889999999999988764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=76.38 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHH
Q 006364 300 YARFESMQDSEKVFDELSCRE---IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHG 376 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a 376 (648)
+.+.|++.+|.-.|+.....| ...|--|......+++-..|+..+++..+-.+-|...+-.|.-.|...+ .-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg--~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG--LQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--hHHHH
Confidence 455666777766666654433 3566666666777776666666666666544445555555555555555 44444
Q ss_pred HHHHHHHH
Q 006364 377 QRCHSHII 384 (648)
Q Consensus 377 ~~~~~~~~ 384 (648)
...++.-+
T Consensus 373 l~~L~~Wi 380 (579)
T KOG1125|consen 373 LKMLDKWI 380 (579)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0044 Score=70.74 Aligned_cols=82 Identities=7% Similarity=-0.193 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHhcC
Q 006364 234 MNREDAVSLFKEMRLDGVCPND----VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLS-----EPSVCNCLITMYARFE 304 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g 304 (648)
|++++|...+++....--..+. ...+.+...+...|+++.|...+.......-.. ...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 5555555555554432101111 122233334455666666666665554321110 0112233344455555
Q ss_pred ChHHHHHHHhh
Q 006364 305 SMQDSEKVFDE 315 (648)
Q Consensus 305 ~~~~a~~~~~~ 315 (648)
+++.|...+++
T Consensus 546 ~~~~A~~~~~~ 556 (903)
T PRK04841 546 FLQAAYETQEK 556 (903)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.4e-05 Score=66.24 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG 508 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 508 (648)
+-..+...|+-+....+....... .+-|..............|++..|...+++... .-.||...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555544444443221 112222333344555555555555555555532 11223555555555555555
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 509 RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 509 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
++++|..-|.+.. ...++.+.+.+...+.-.||.+.|+.++.......+.+..+-..|+.+....|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555554432 22334445555555555555555555555555555555555555555555555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00029 Score=67.88 Aligned_cols=181 Identities=9% Similarity=0.015 Sum_probs=119.9
Q ss_pred HhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 402 YGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARHGDY--ESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 402 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
+.+.| ++++++..++.+.+ ++..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|..-..++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33444 45677777666553 2444566555555555542 66788888887642 234677777777777888888
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc---CCH----HHHHHHHhhCC--CCCCHHHHHHHHHHHHHc----CC
Q 006364 476 KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---GRL----EEAEELVGQIP--GGPGLSVLQSLLGACRIH----GN 541 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----g~ 541 (648)
++++.++++++. .|+ ...|+....++.+. |.. +++.++..++. .+-+...|+-+.+.+... ++
T Consensus 160 eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 160 DELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 888888888755 443 55666555555443 222 45666664433 345677888888888773 44
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------------CcHHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKG------------------DWEMVAILRKGM 586 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 586 (648)
..++......+.+.+|.++.+...|+.+|.... ..++|.++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 566888888888888999999999999998643 236677777777
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00021 Score=77.61 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCC-C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEK-S-EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
+|.+++++-..-|.-+...++|++..+- | ...|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc
Confidence 3444444444444444455555544432 2 234555555555555555555555555553 333344555555555555
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
.+-+.|..++.++.+. -|. .....-.+.+-.+.|+.+.+..+|+... .+.....|+..+..-.++|+.+.++
T Consensus 1578 ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 5555555555555432 232 3333444444555555555555555443 2224445666666666666666666
Q ss_pred HHHHHHHhcC
Q 006364 547 RIADALMKME 556 (648)
Q Consensus 547 ~~~~~~~~~~ 556 (648)
.+|+++..+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 6666655543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=70.10 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=137.5
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc--H
Q 006364 401 MYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHG-DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM--I 474 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~ 474 (648)
.+.+.++.++|+...+.+.+. +..+|+.....+...| ++++++..++++.+... -+..+|+.-...+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 344567888899888877653 4557777777777777 57999999999998532 234556655444555555 3
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCH----HH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNV----EM 544 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~----~~ 544 (648)
+++..+++.+.+ +.|. ..+|+....++.+.|++++|++.++++. ..-+..+|+.....+... |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 678889988874 4776 8889999999999999999999999986 345777888877666554 222 46
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCcHHHHHHHHHHhh
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEK----GDWEMVAILRKGMKS 588 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 588 (648)
+.....++++.+|.|.++|..+..++... ++..+|.+...+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77778899999999999999999999883 445668777766544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.5e-05 Score=66.95 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHH
Q 006364 454 VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
..|+......+-.++.-.|+-+.+..+....... .| +......++....+.|++.+|...+++.. .++|...|+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 4454332256667777788888888887765322 23 35566668999999999999999999875 668999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+.-+|-+.|+.+.|...|.+++++.|.++.++..|+-.|.-.|+.+.|..++......+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998776544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-05 Score=69.69 Aligned_cols=198 Identities=10% Similarity=0.056 Sum_probs=155.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLS-VLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~ 470 (648)
+++.+.-+.+..++.+|++++..-.++ +....+.+..+|....++..|-..|+++-. ..|...-|.. -..++-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 445555556777899999998766553 556778888999999999999999999877 4566555432 3455667
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSC--MVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
.+.+.+|+++...|.. .|+...-.. -....-..+++..+..+++..+.+.+..+.+.......+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 8889999999988842 344222111 1223446788999999999999777788877777777899999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 549 ADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 549 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
|+.+.+...-+|..-..++-++.+.|+++.|.+...++.++|++..|...
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 99999998888888888999999999999999999999999999988554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=76.24 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=106.8
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLS 463 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 463 (648)
...++..+..|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 445677778888888888999999998887764 4 556777888888888999999998888887 456654 4455
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLL 533 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 533 (648)
+..++.+.|++++|..+|++.... .|+ ...+..+..++...|+.++|...|++.. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 566678888999999999888753 555 7788888888888899999988888765 335555444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-06 Score=52.59 Aligned_cols=35 Identities=31% Similarity=0.682 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00042 Score=61.39 Aligned_cols=166 Identities=13% Similarity=0.171 Sum_probs=118.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAI---ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
..++-+..-+|+.+.|..+++.+...-+.++... ..-+-..|++++|+++|+...+.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344455566788888888877654322222211 123445788999999999998864 556677776666666677
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcC---CHHHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHG---NVEMGER 547 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g---~~~~a~~ 547 (648)
.--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...| |.+.+.+
T Consensus 135 K~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777888888877765 45678899999999999999999999999865 344 5556666766655544 7888999
Q ss_pred HHHHHHhcCCCCchhHH
Q 006364 548 IADALMKMEPAGSGSYV 564 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~ 564 (648)
.|++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999996655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-05 Score=76.37 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH 539 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 539 (648)
..|+..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++.. .+-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666677788888888877654 3553 3346667767777778887777654 223566666667778899
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++++.|..+++++.+..|.+..+|..|+.+|...|+|++|.-.++-+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-05 Score=74.62 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .+-|...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 445567777778899999999999999888888888999999999999999999999864 3335555555666688999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+++.|+.+.+++. ...|+ ..+|..|+.+|.+.|++++|+-.++.+|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999997 45887 7899999999999999999999999988
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00045 Score=74.40 Aligned_cols=231 Identities=8% Similarity=0.020 Sum_probs=132.5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
...+..|+..|...+++++|.++.+...+. .+..|-.+...+.+.++.+++..+ .+.. ...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------~~~ 94 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------SFS 94 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------hcc
Confidence 344555666666666666666666544321 223333333355555555544443 2222 111
Q ss_pred cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 006364 367 AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 443 (648)
... ++.....++..+... ..+...+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|+.. +.++|.
T Consensus 95 ~~~--~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNL--KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccc--chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 111 222223333333332 23344566677777788888888888777664 3666777777777777 778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG 522 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 522 (648)
+++.+.... +...+++..+.++|.+++.. .|+ ...+..+....... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------hcc
Confidence 777776653 44455677777777777633 444 33322222221111 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
.--..++..+-..|...++++.+..+++.+++.+|.|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2223455556666777788888888888888888888888887877776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-06 Score=51.26 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.3
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCCh
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDH 159 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 159 (648)
.+||++|.+|++.| ++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~-~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAG-RVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999 999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0072 Score=56.12 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=132.7
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChHH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET---QEKSEFAWTAIISALARHGDYES 441 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 441 (648)
+...| +...+......+.+.. +.|...+..-..+|...|.+..|+.=+... ...+..+.--+-..+...|+.+.
T Consensus 165 ~~~~G--D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 165 ASGSG--DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HhcCC--chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 34445 6666666666666543 567777777788888888888887665543 34566666677777788888888
Q ss_pred HHHHHHHHHHCCCCCCHH-HH---HHH---------HHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 006364 442 VMNQFKEMENKGVRPDSI-TF---LSV---------LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDM 503 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~~-t~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~ 503 (648)
++...++..+ +.||.. +| ..| .......+++.++++-.+...+. .|. ...+..+-.+
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 8888887776 567752 11 111 11234556777777777777644 444 3345556677
Q ss_pred HhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 504 LGRVGRLEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
+...|++-+|++...+.. ..|+ +.++.--..+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 778889999998877755 3444 777777778888888999999999999999988865543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.2e-06 Score=50.09 Aligned_cols=33 Identities=33% Similarity=0.721 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRP 456 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 456 (648)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00036 Score=67.84 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=126.9
Q ss_pred CHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 407 SIFESQRVFNETQE------KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 407 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
++.++...-+.++. ++...+...+.+.........+-.++-+-.+. .-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 44455545555543 24444555555444333333333333222221 11122333333 45567899999999
Q ss_pred HHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 481 FDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 481 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
++.+... .|+ +..+....+.+.+.++..+|.+.++++. ..|+ ...+-.+..++.+.|+..+|+.+++.....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999865 776 7777888999999999999999999876 4465 66778888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 558 AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 558 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+++..|..|+.+|...|+-.++...+-+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999998876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.023 Score=59.81 Aligned_cols=212 Identities=13% Similarity=0.058 Sum_probs=138.6
Q ss_pred cCCChhHHHHHhhcCCC--CCcchHHHHHHhhccC--C---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhH
Q 006364 6 KSGQFDKALCIFNNLNN--PDIVSWNTVLSGFEKS--D---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQ 78 (648)
Q Consensus 6 ~~g~~~~A~~~f~~~~~--p~~~~~~~ll~~~~~~--~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 78 (648)
..+++..|....+++.+ || ..|...+.++... | +|..+++.....+.. |..|+..+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677788877777653 44 3466667776433 3 888888877766555 88899999999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCCChhH----HHHHhccCCCCCcchHHHHHHHHHcCCCC---------hHHHHH
Q 006364 79 LHSLIVKFGLDSEVYVGNALITMYSRWGRLVE----ARRVFDEMPNKDSVSWNAILSGYTQDGDY---------GVEAIL 145 (648)
Q Consensus 79 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~g~~---------~~~a~~ 145 (648)
+|++.... .|+......+..+|.|.+++.. |.+++...++.--.-|+.+- .+.+.-.. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~S-lilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVIS-LILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHH-HHHHhccCCcccccchhHHHHHH
Confidence 99999876 4667778888889999887754 77788877776656666542 22221101 123444
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHhcCCCChhHHHHHHHH-HHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC
Q 006364 146 ALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQIHGV-SIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD 222 (648)
Q Consensus 146 ~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (648)
.++.+.+.+ -.-+..-...-+..+...+++++|..++.. ....-...+...-+.-++.+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555555443 212222222233445567788899888843 33333344555556777888888888887666555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00046 Score=61.15 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV-LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
|..++-+....|+.+.|..+++++... + |.+.-...+ ..-+...|.+++|+++++...++ .|+ ..+|-.-+-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHH
Confidence 444556667789999999999999886 4 554322222 12245678999999999999877 575 7777777777
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---CcHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG---DWEM 578 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 578 (648)
+-..|+.-+|++-+.... +..|...|.-|...|...|+++.|.-.+++++=..|-++-.+..++.++...| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888888888776654 45799999999999999999999999999999999999999999999988776 4555
Q ss_pred HHHHHHHHhh
Q 006364 579 VAILRKGMKS 588 (648)
Q Consensus 579 a~~~~~~m~~ 588 (648)
+.+++.+..+
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 6677765544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=61.55 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=87.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 445 QFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 445 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
+|++... ..|+. .....+...+...|++++|.+.|+..... .|+ ...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 44543 44556666778888999999999888653 454 7788888888999999999998888764
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 522 -GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 522 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
.+.+...+..+...+...|+.+.|...++++.+.+|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345677788888889999999999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-06 Score=49.16 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.6
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRL 157 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p 157 (648)
.+||++|.+|++.| +++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g-~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAG-DPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 57888888888888 8888888888888888877
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0045 Score=55.50 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
+.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 33444444444444444444556778888888888877633 2333333344556667778888888888752 345
Q ss_pred HHHHHHHHHh----cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHH
Q 006364 459 ITFLSVLTVC----GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSL 532 (648)
Q Consensus 459 ~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 532 (648)
.|.+-|..++ ...+.+.+|.-+|++|.++ ..|+..+.+-+..+....|++++|..+++.... ..++.++..+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 5666555554 3345677888888888543 466777777777777777788888777776652 2455555555
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCCc
Q 006364 533 LGACRIHG-NVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 533 ~~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 560 (648)
+..-...| +.+...+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 54444444 44455566666666666654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=60.45 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 500 MVDMLGRVGRLEEAEELVGQIPGG-PGL----SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...+...|++++|...|+..... |+. .....|...+...|+++.|...++.. ...+..+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 334444445555555444443311 221 12223344444555555555554331 122233445555666666666
Q ss_pred CcHHHHHHHH
Q 006364 575 DWEMVAILRK 584 (648)
Q Consensus 575 ~~~~a~~~~~ 584 (648)
++++|...++
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 6666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00054 Score=58.12 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCM 500 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 500 (648)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+..... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 34444444 3677777777788777742 222 123334456677788888888888888765 32232 2344556
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMGERIADAL 552 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 552 (648)
...+...|++++|+..++....+ ..+..+...+..+...|+.+.|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888888776533 34445566677888888888888888765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.044 Score=57.79 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=123.1
Q ss_pred hcccChhhHhHHHHHHHHhCCCCCcchHHHHHHH--HHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHH
Q 006364 68 LDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITM--YSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~ 142 (648)
...+++..|.+....+.+.. |+. .|...+.+ +.|.|+.++|..+++.... .|..|..++-..|...+ ..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-KLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-hhhH
Confidence 35677888888888887763 443 23334443 3577899999888887654 37778888888888888 8899
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC----------hHH
Q 006364 143 AILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEV----------TGD 212 (648)
Q Consensus 143 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~ 212 (648)
|..+|++.... -|+......+..++.+.+++..-.++--++-+ .++-+.+.+=+++..+...-. +.-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999888764 57777777888888888877665554444444 234455555555555443211 122
Q ss_pred HHHHHhcCCCCC--------chhhHHHhc--CChhhHHHHHH-HHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 006364 213 ANKVFRRMHDRN--------VISWTTMIS--MNREDAVSLFK-EMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC 281 (648)
Q Consensus 213 A~~~~~~~~~~~--------~~~~~~li~--g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 281 (648)
|.+.++.+.+.+ ...|--++. |.+++|++++. .....-...+...-+--+..+...+.+.+..++-..+
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344444443322 111222222 56666666652 2222222223333334444555556666666655555
Q ss_pred HHhc
Q 006364 282 IKTN 285 (648)
Q Consensus 282 ~~~~ 285 (648)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 5554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=57.00 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+..+...+...|++++|...++... .+.+...+..+...+...|+++.|...++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888887754 22344667777888888899999999999999999988889999999999999
Q ss_pred CcHHHHHHHHHHhh
Q 006364 575 DWEMVAILRKGMKS 588 (648)
Q Consensus 575 ~~~~a~~~~~~m~~ 588 (648)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.7e-05 Score=55.02 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG-DWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 588 (648)
++.+|..+...+...|+++.|+..++++++.+|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999987654
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.8e-05 Score=46.46 Aligned_cols=31 Identities=26% Similarity=0.705 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00063 Score=73.33 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
.+..+..+|.+.|+.+++..+|+++.+- .|+ +.+.+.+...|... ++++|.+++.+.. ..+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV------------~~~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DKEKAITYLKKAI------------YRFIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH------------HHHHh
Confidence 4444444555555555555555555422 343 45555555555555 5555555444321 11223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc--------------------hhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 539 HGNVEMGERIADALMKMEPAGS--------------------GSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~--------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+++..+..+++++.+.+|++. ..+.-+-+.|...++|+++..+++.+.+..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 3344444444444444444432 334455577888899999999999887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=66.33 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=45.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
+.+++.+|+..|...+ .+.|+ ..-|..-..+|.+.|.++.|.+-.+... ..| ...+|..|..++...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555544 33443 4444444555555555555554444433 122 2334555555555555555555
Q ss_pred HHHHHHHhcCCCCchhH
Q 006364 547 RIADALMKMEPAGSGSY 563 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~~ 563 (648)
+.|+++++++|++....
T Consensus 170 ~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHhhhccCCCcHHHH
Confidence 55555555555555333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=57.30 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-CCC----HHHHHHHHHH
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-GPG----LSVLQSLLGA 535 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~ 535 (648)
..+...+...|++++|...|..+.+.+.-.|. ...+..+..++.+.|++++|...++.+.. .|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555433111111 23344445555555555555555544321 111 2344445555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+...|+.+.|...++++.+..|+++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555566666666666655555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=70.45 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=78.6
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|+++|+++++. .|+ ...|..+..+|.+.|++++|+..++++. .+.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34456678888888888888743 665 7777778888888888888888887764 33456677777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
++.|...++++++++|.++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888887777766555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-05 Score=59.59 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGP---GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
|++++|+.+++++. ..| +...|..+..++...|+++.|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555443 112 334455566666666666666666666 5556666666667777777777777777777
Q ss_pred HH
Q 006364 584 KG 585 (648)
Q Consensus 584 ~~ 585 (648)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0039 Score=55.87 Aligned_cols=149 Identities=10% Similarity=0.092 Sum_probs=108.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML---- 504 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---- 504 (648)
-...|+..|++++|+...+... ..+... .=...+.+..+.+-|.+.++.|.+ +. +..+.+-|..++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHh
Confidence 3456888899999998887621 222222 222334567788899999999963 22 244555454444
Q ss_pred hhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH-HH
Q 006364 505 GRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV-AI 581 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~ 581 (648)
.-.+.+.+|.-+|++|.. +|++.+.+....+|...|++++|+.+++.++..++.+|.+...++-+-...|+-.++ .+
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345678999999999874 588888888888999999999999999999999999999998888887778876554 45
Q ss_pred HHHHHh
Q 006364 582 LRKGMK 587 (648)
Q Consensus 582 ~~~~m~ 587 (648)
.+..++
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=68.73 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=81.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV 507 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~ 507 (648)
....+...|++++|+.+|++.++.. +-+...|..+..+|...|++++|+..++.+.+ +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999852 23467788888899999999999999999974 4776 88899999999999
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGPGLSVLQSLL 533 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~~~~~~~~l~ 533 (648)
|++++|...+++.. ..|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999998865 345444444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=56.73 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHH
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIPG-GPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLM 566 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 566 (648)
.++..++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778889999999999999988752 232 3567778899999999999999999999988875 5679999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 567 SNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+.++...|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999887653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.054 Score=53.85 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC---HHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS---IFESQRVFNETQE----KSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
.+++..+++..+..-...+..+|..+.+.--..-+ .+.....+++... .-..+|..+++.-.+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 44555555555544334444555544433222112 3444444444432 2345788899998999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-
Q 006364 446 FKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG- 523 (648)
Q Consensus 446 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 523 (648)
|.+..+.+..+ +....++++.-++ +++.+-|.++|+.=.+++|-.| .--...++-+...++-..|..+|++...+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988888 5566667776554 5799999999998877755444 33455678888899999999999987633
Q ss_pred --C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 524 --P--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG----SGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 524 --~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
| ...+|..++..-..-||+..+.++-++....-|.+ ...-..+..-|.-.+.+..-..-++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 2 34789999999999999999999988887665522 12333455556666655544444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.4e-05 Score=44.76 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=23.9
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCC
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGL 155 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~ 155 (648)
++||++|++|++.| ++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~-~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMG-QFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccc-hHHHHHHHHHHHhHCcC
Confidence 46788888888888 88888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=58.74 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=83.5
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
|+.++ ....-....-+-..|++++|..+|+-+. ..-+...|..|...|...++++.|...|..+.-++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55555 3333344455668999999999998654 45677788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+.+|...|+.++|...++...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999986654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.7e-05 Score=52.56 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...+...|+++.|+..++.+++..|.++..+..++.++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999988887754
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00047 Score=63.32 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 491 EPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 491 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
.|+ ...|..|...|.+.|+++.|..-|.+.. ..+++..+..+..++... ....++..++++++..+|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 575 9999999999999999999999998765 457788888888776544 3567899999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
.|+-.+...|++.+|...|+.|.+..-.-+|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999999987654444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.06 Score=51.91 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-..+... +-++.-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44444556666666666666666666666666666666666655543321 112355556666666666666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHh
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVG 518 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (648)
.+...+ | +..-+..|.++|++.+|.+.-.
T Consensus 258 ~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 258 KYIPKI-------P----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHH
Confidence 665542 1 1334555666666666655433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0021 Score=61.23 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV-CGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
.+|..++....+.+..+.|..+|++..+.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998542 2233444433333 3345778889999999988743 34677888899
Q ss_pred HHhhcCCHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 503 MLGRVGRLEEAEELVGQIPGG-PG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.+.+.|+.+.|..+|++.... |. ..+|...+..-.+.|+.+...++.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987632 33 358999999999999999999999999998887543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=57.13 Aligned_cols=130 Identities=14% Similarity=0.251 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYS 498 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 498 (648)
....+..+...+...|++++|+..|++.......+. ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777888888888888888888876433332 356777777788888888888888887643 565 66666
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.+..++...|+...+..-++.. ...++.|.+.++++.+.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777777777766554332221 122577888888888888876 6666666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=58.27 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
...+..+...+.+.|++++|...+++.. ..++ ...+..+...+...|+++.|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456666677777777777777776653 1121 3567778888888899999999999999888988888888888
Q ss_pred HHHhcCC
Q 006364 569 LYAEKGD 575 (648)
Q Consensus 569 ~~~~~g~ 575 (648)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0039 Score=64.48 Aligned_cols=139 Identities=11% Similarity=0.042 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc--------cCcHHHHHHHHHHhHH
Q 006364 421 KSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGR--------NGMIHKGRHLFDSMLK 486 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--------~g~~~~a~~~~~~m~~ 486 (648)
.+...|...+.+.... +....|+.+|++..+ ..|+- ..|..+..++.. ..++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555666666554332 225677777777776 45653 233332222211 0112222333322211
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
......+...|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011123444444444444555555555555543 3345555555555555555555555555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00094 Score=61.00 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=77.5
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
.+-+.+.+++++|+..|.+.. .+.|++.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 455778899999999999865 445677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006364 579 VAILRKGMK 587 (648)
Q Consensus 579 a~~~~~~m~ 587 (648)
|++.+++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 999987544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0043 Score=54.21 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+ +.|+ ..++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44567777777888888888888888876432221 24677777788888888888888888764 3554 555666
Q ss_pred HHHHHh
Q 006364 500 MVDMLG 505 (648)
Q Consensus 500 l~~~~~ 505 (648)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00021 Score=51.33 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=43.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...|+++.|.+.++++.+..|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999998876654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0003 Score=49.96 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
+...+.+.|++++|.+.|+... ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778888888888888765 224 566788888888889999999999999999888874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=57.75 Aligned_cols=92 Identities=13% Similarity=-0.060 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
...|..++..+...|++++|...+++.. ..| ...+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777777888888888888887763 112 23578888899999999999999999999999999888888888
Q ss_pred HHH-------hcCCcHHHHHHHHH
Q 006364 569 LYA-------EKGDWEMVAILRKG 585 (648)
Q Consensus 569 ~~~-------~~g~~~~a~~~~~~ 585 (648)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 78888866555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.005 Score=63.73 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCCCCCHHHHHHHHHHhcc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHH
Q 006364 452 KGVRPDSITFLSVLTVCGR-----NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV--------GRLEEAEELV 517 (648)
Q Consensus 452 ~g~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 517 (648)
.+.+.|...|...+++... .+..+.|+.+|++..+ ..|+ ...|..+..++... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456777888888888543 2347899999999985 4898 66776665554332 1234455555
Q ss_pred hhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 518 GQIP----GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 518 ~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+.. ...++.++..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4422 334557787777777778999999999999999999 578999999999999999999999987654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=50.65 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+. .|. ...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHH
Confidence 3445555555566666666665555431 122234444444555555555555555554322 222 23344444444
Q ss_pred hhcCCHHHHHHHH
Q 006364 505 GRVGRLEEAEELV 517 (648)
Q Consensus 505 ~~~g~~~~A~~~~ 517 (648)
...|++++|...+
T Consensus 79 ~~~~~~~~a~~~~ 91 (100)
T cd00189 79 YKLGKYEEALEAY 91 (100)
T ss_pred HHHHhHHHHHHHH
Confidence 4444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00053 Score=50.11 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=49.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999998877653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=50.04 Aligned_cols=87 Identities=9% Similarity=0.112 Sum_probs=68.1
Q ss_pred HHHHHHHhhcccChhhHhHHHHHHHHhCC-CCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCC
Q 006364 60 YSTALSFCLDHEGFLFGLQLHSLIVKFGL-DSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGD 138 (648)
Q Consensus 60 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 138 (648)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+ -.+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~- 83 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IEN- 83 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHH-
Confidence 34556777778999999999999999999 89999999999887753211111 112
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 006364 139 YGVEAILALIEMMRKGLRLDHVSFTSAASACG 170 (648)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 170 (648)
..-+.+.+|+.|...+++|+..||+.++..+.
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 45688899999999999999999999998764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00012 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.551 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 549 ADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 549 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00056 Score=51.60 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 436 HGDYESVMNQFKEMENKGV-RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|+.+++.. ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555666666666655322 112333333555555666666666665551 22222 23333345555555666665
Q ss_pred HHHHh
Q 006364 514 EELVG 518 (648)
Q Consensus 514 ~~~~~ 518 (648)
.+.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0029 Score=48.75 Aligned_cols=81 Identities=14% Similarity=0.326 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccC--------cHHHHHHHHHHhHHhcCCCCChH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPDSITFLSVLTVCGRNG--------MIHKGRHLFDSMLKDYHIEPSPD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 495 (648)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. .+-..+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566667777999999999999999999 899999999999876542 355677889999877 8999999
Q ss_pred HHHHHHHHHhh
Q 006364 496 HYSCMVDMLGR 506 (648)
Q Consensus 496 ~~~~l~~~~~~ 506 (648)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.041 Score=55.68 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=59.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 513 (648)
..+|..+-++++-+++-. .+..+...+..-+-+...+..|-++|.+|-. ...++++....++|.+|
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHh
Confidence 344445555554444322 2334444444444555566667777777622 23567777778888888
Q ss_pred HHHHhhCC-CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 514 EELVGQIP-GGPGLSV-----------LQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 514 ~~~~~~~~-~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
..+-++.| ..|++.. +.-.-.++.+.|+..+|.++++++.
T Consensus 793 FalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 793 FALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 88877776 2233321 1112235556667777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00032 Score=50.43 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=35.2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQ 530 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 530 (648)
..|++++|+++|+.+... .|+ ...+..++.+|.+.|++++|.++++++. ..|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456777777777777644 553 5666666777777777777777766665 235533333
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=64.59 Aligned_cols=119 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-C-----CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhh
Q 006364 88 LDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-K-----DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVS 161 (648)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t 161 (648)
.+.+......+++......+++.+..++-.... | -..|..++|+.|.+.| ..+.++.++..=...|+-||.+|
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~-~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELG-AEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcC-CHHHHHHHHhChhhcccCCChhh
Confidence 344555666777777777777888777666543 1 2345569999999999 99999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 006364 162 FTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (648)
|+.||..+.+.|++..|.++...|...+.-.+..++.--+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888777777776666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0044 Score=59.07 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=106.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhcccCcHHHHHHHHHHhHHhcCCCCChHH------------
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT--VCGRNGMIHKGRHLFDSMLKDYHIEPSPDH------------ 496 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 496 (648)
.++...|++++|...-....+. .++ ..+..+++ ++-..++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4566778888887766555442 111 11222222 2345567788888887765 44565221
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 497 -YSCMVDMLGRVGRLEEAEELVGQIP------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 497 -~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
+..=.+-..+.|++.+|.+.+.+.. .+|++..|.....+..+.|+.++|..--+.++.++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1112333567788888888887765 235566666666777788889999888888888888888888888899
Q ss_pred HHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 570 YAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 570 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
+...++|++|.+-++...+..-.+.+..+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~ 359 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRT 359 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99999999988888776544433444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0036 Score=54.70 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCChhhHHHHHHHhh-----cccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHH
Q 006364 54 VFDAVTYSTALSFCL-----DHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNA 128 (648)
Q Consensus 54 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 128 (648)
..+..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- .-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 347778888887775 457888888899999999999999999999998764 3321 1111
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q 006364 129 ILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNL-ELGKQIHGVSIK 187 (648)
Q Consensus 129 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 187 (648)
+=..+-.-..+.+-|++++++|...|+-||..|+..+++.+++.+.. ....++.-.|.+
T Consensus 108 fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 108 FQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11222222225578999999999999999999999999999887763 344555555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.15 Score=49.25 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
.+.+..+.-|...|+...|.++-.. |.+ |+..-|...+.+|+..|+|++-.++... +-++.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566677778888887777544 455 8899999999999999999998887664 2344668899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.|+..+|..+..++ .+..-...|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888871 2255678899999999998775443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.058 Score=52.48 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=108.0
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK-------SEFAWTAIISALAR---HGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.++-.|-...+++...++.+.+... ....-.....++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888899999998888764 22223344556667 8999999999999777667788888888776
Q ss_pred Hhc---------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-HH---HHHHHH---hhC-----C--CC
Q 006364 467 VCG---------RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR-LE---EAEELV---GQI-----P--GG 523 (648)
Q Consensus 467 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-----~--~~ 523 (648)
.|- .....++|+..|.+. +.+.|+..+=-.++.++...|. .+ +..++- ... . ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 233578888888876 4667774332223333334443 21 222222 111 1 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+--.+.+++.++.-.||.+.|.++++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4455567899999999999999999999999987653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=47.86 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG-NVEMGERIADALMKMEP 557 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 557 (648)
...|..+...+...|++++|+..|++.. .+.++.+|..+..++...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666667777777777777766644 3345566777777777777 67888888888877776
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.27 Score=48.11 Aligned_cols=440 Identities=13% Similarity=0.070 Sum_probs=209.1
Q ss_pred cccChhhHhHHHHHHHHhCCCCC------cchHHHHHHHHHhCCChhHHHHHhccCCCC-CcchHHHHHHHH--HcCCCC
Q 006364 69 DHEGFLFGLQLHSLIVKFGLDSE------VYVGNALITMYSRWGRLVEARRVFDEMPNK-DSVSWNAILSGY--TQDGDY 139 (648)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~g~~ 139 (648)
+++++.++..+|.++.+.. ..+ ....+.++++|.. .+++.....+....+. ....|-.+..++ -+.+ .
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k-~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK-E 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh-h
Confidence 5667777777777776542 122 1234456666653 3344433333333221 123344444333 2445 6
Q ss_pred hHHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcC----CCCcchHHHHH
Q 006364 140 GVEAILALIEMMRK--GLRL------------DHVSFTSAASACGHEKNLELGKQIHGVSIKMGY----GTHVSVGNVLM 201 (648)
Q Consensus 140 ~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li 201 (648)
+.+|++.+..-... +-+| |..-=+..+.++...|.+.+++.++..+...=+ .-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 66777666654433 2221 222224456677788888888888877765443 36778888877
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCC--chHH
Q 006364 202 STYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLD------GVCPNDVTFIGLIHAISIGN--LVKE 273 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~--~~~~ 273 (648)
-+++++--++--......+- || | ++-++-...+|... .+.|....+..++....... .+.-
T Consensus 175 lmlsrSYfLEl~e~~s~dl~-pd---y-------YemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLY-PD---Y-------YEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHhHHHHHHHHHhcccccC-hH---H-------HHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 77766432221111100000 10 1 11112222222111 23344444444444332221 1222
Q ss_pred HHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHHHhhcC--------CCCcccHHHHHHHHHhcCCcHHHHHHH
Q 006364 274 GRMIHGLCIKTNFLSEPS-VCNCLITMYARFESMQDSEKVFDELS--------CREIISWNALISGYAQNGLSLAAVQAF 344 (648)
Q Consensus 274 a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (648)
-.+++......-+.|+.. +...|+.-+.+ +.+++..+.+.+. +.=+.++..++...++.++...|-..+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 233343333444444432 22334433333 3344433333332 122356666777777777777776666
Q ss_pred HHhHhCCCCCHHHHH-------HHHHHhccCch--hhHHHHHHHHHHHHHhCCCCchhHHHHHH---HHHhhcCC-HHHH
Q 006364 345 FGVIKESKPNAYTFG-------SVLNAVGAAED--ISLKHGQRCHSHIIKVGLDSDPIVGSALL---DMYGKRGS-IFES 411 (648)
Q Consensus 345 ~~m~~~~~p~~~~~~-------~ll~a~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A 411 (648)
.-+.- ..|+...-. .+-+..+.-.. -.+..-..++..+....+..-. ....|+ .-+.+.|. -++|
T Consensus 322 ~lL~~-ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKI-LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHh-cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHH
Confidence 54433 222221111 11111110000 0222333344444433332211 112222 23444555 7778
Q ss_pred HHHHhhcCC---CChhHHHHHH----HHHHhC---CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHH--hcccCcHH
Q 006364 412 QRVFNETQE---KSEFAWTAII----SALARH---GDYESVMNQFKEMENKGVRPDSIT----FLSVLTV--CGRNGMIH 475 (648)
Q Consensus 412 ~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a--~~~~g~~~ 475 (648)
.++++.+.+ -|..+-|... ..|.+. ..+.+-+.+-+-..+.|+.|-.+. -|.|..| +-..|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 888876653 2444333322 122221 223334444444456677765432 2333332 34568888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
++.-+-.-.. .+.|++.+|..+.-++....++++|..++..+| |+..++++
T Consensus 480 kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 8765544443 568888899888888888889999999998886 45555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0059 Score=53.41 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=75.2
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc--------------
Q 006364 413 RVFNET--QEKSEFAWTAIISALAR-----HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN-------------- 471 (648)
Q Consensus 413 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 471 (648)
..|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44566677777777664 466777777889999999999999999999887543
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 472 --GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 472 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 346778999999955 5999999999999999988875
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.007 Score=60.02 Aligned_cols=128 Identities=11% Similarity=-0.009 Sum_probs=105.3
Q ss_pred HHHHHHh---CCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHh--CCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 44 FALRMNL---IGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF--GLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 44 ~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
++..|.+ .+.+.+......++..+....+++.+..++-..... ...--+.+..++|+.|.+.|..+.+..++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444432 345668888889999999988999999988888765 23334566779999999999999999999875
Q ss_pred CC----CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCC
Q 006364 119 PN----KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHE 172 (648)
Q Consensus 119 ~~----~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (648)
.. ||..++|.+|..+.+.| ++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~-~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKG-NYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcc-cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 54 89999999999999999 9999999999998888888888888777777554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=46.46 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=67.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLG 505 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 505 (648)
+..++-..|+.++|+.+|++..+.|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999887665 35667788888999999999999999877632211 1222333455778
Q ss_pred hcCCHHHHHHHHhh
Q 006364 506 RVGRLEEAEELVGQ 519 (648)
Q Consensus 506 ~~g~~~~A~~~~~~ 519 (648)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0051 Score=58.60 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR-VGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
.+|..++..+.+.+..+.|+.+|..+.+.... +...|......-.+ .++.+.|.++|+... ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999744222 34555555555333 566677999999876 45678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+...++.+.+..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766554 57888888888999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=49.44 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV 507 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~ 507 (648)
..-+...|++++|..+|+-... +.|.. .-|..|..+|...|++++|+..|.... .+.|+ +..+-.+..++...
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHc
Confidence 3334445555555555554444 22322 233334444444555555555555443 23343 44444444455555
Q ss_pred CCHHHHHHHHh
Q 006364 508 GRLEEAEELVG 518 (648)
Q Consensus 508 g~~~~A~~~~~ 518 (648)
|+.+.|.+.|+
T Consensus 117 G~~~~A~~aF~ 127 (157)
T PRK15363 117 DNVCYAIKALK 127 (157)
T ss_pred CCHHHHHHHHH
Confidence 55555444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.33 Score=46.48 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=181.8
Q ss_pred HHHHHHHHHh--cCChHHHHHHHhhcC---CCCcccHHHHHHH--HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh
Q 006364 293 CNCLITMYAR--FESMQDSEKVFDELS---CREIISWNALISG--YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV 365 (648)
Q Consensus 293 ~~~li~~~~~--~g~~~~a~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~ 365 (648)
|.+|-.++.- .|+-..|.+.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|...-..-.--+..|.-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 5666555544 467777776655433 3455444445443 44679999999999999762222222333444444
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---h
Q 006364 366 GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEF--AWTAIISALA---R 435 (648)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~ 435 (648)
-+.| +.+.+.+.-...-..- +--.-...+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+ -
T Consensus 165 qr~G--areaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 165 QRLG--AREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred Hhcc--cHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 5566 7777777666555432 2234566788899999999999999998654 34432 2223333222 1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH--
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSIT-FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE-- 512 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-- 512 (648)
..+...|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .|.+..+...+ +.|.|+.-.
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHH
Confidence 2346666666555554 6777543 334456788999999999999999754 67666654443 346665322
Q ss_pred HHHH--HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHh
Q 006364 513 AEEL--VGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMK 587 (648)
Q Consensus 513 A~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~ 587 (648)
..+. +..|. +.+....-++..+-...|++..|..-.+.+....|.. ++|.+|+++-... |+-.++...+-+-.
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 2221 23333 3455666777788889999999999999998888875 7899999997665 99888887775544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0014 Score=41.94 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
.+|..+..++...|+.+.|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.023 Score=48.15 Aligned_cols=148 Identities=9% Similarity=0.087 Sum_probs=96.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.=+.+....-..+-.+ ..|+...-..|..+..+.|++.+|...|++.... -+.-|....-.+..+....+++.+|.
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 33344544443333222 5677666677778888888888888888887542 23335677777777788888888888
Q ss_pred HHHhhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 515 ELVGQIP-GGP---GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 515 ~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..+++.. .+| ++.....+...+...|..+.|+..++.+...-|. +..-...+..+.++|+.+++..-+..+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8777643 111 2223445667788888888888888888876664 345555667778888777765544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0082 Score=48.19 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPA---GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
+-.+.+.++..|+.++|..+++...+..|+ +......++-++...|++++|.+.+
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334445555555555555555555555454 4444445555555556666655544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0044 Score=60.81 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS---YVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...|+.+..+|...|++++|...++++++++|+++.. |..++.+|...|+.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555432 55555555555555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.079 Score=50.73 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=10.8
Q ss_pred HHHHHhcCCcHHHHHHHHHh
Q 006364 328 ISGYAQNGLSLAAVQAFFGV 347 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m 347 (648)
...|-..+++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44555556666666665554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0034 Score=45.71 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
..|.+.+++++|.++++.+. .+.++..|......+...|+++.|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888765 345666777788888888999999999999999988876655433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.019 Score=53.61 Aligned_cols=100 Identities=9% Similarity=0.136 Sum_probs=53.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----CCCHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-----GPGLSVLQSLLG 534 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~ 534 (648)
|...+.-..+.|++++|+..|+.+.+.+.-.+- ...+-.+..+|...|++++|...|+.+.. +.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334446666666666666654221111 23455556666666666666666555431 112334444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+...|+.+.|...++.+++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56666777777777777766666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0075 Score=56.36 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVL 565 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 565 (648)
...|..-+..+.+.|++++|...|+.+. ..|+ +.++..+..++...|+++.|...|+++.+..|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4456666666677899999999988765 2243 3567788899999999999999999999988775 566777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.++++.+.+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=48.11 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..-|.+.|++.-|..-++.+++.-|+. +.+...+.++|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455788899999999999999887765 4567888999999999999999887653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.31 Score=45.24 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
.-|.+.|.+..|..-++.+.+++.-.|. .+....++.+|...|..++|....
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3355556666666666666655544443 445555556666666666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0065 Score=57.81 Aligned_cols=129 Identities=10% Similarity=-0.013 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSM---LKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPGL 526 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~ 526 (648)
..|..|...|.-.|+++.|+...+.- .+.||-... ...+..+.+++.-.|+++.|.+.++... .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666667777788999998776543 244554443 6778889999999999999998887532 11234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKM----E--PAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
....+|.+.|....+++.|+.+..+-+.+ + .....+|.+|+++|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45567778888888888888877665432 2 3456789999999999999999988776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.14 Score=46.21 Aligned_cols=168 Identities=8% Similarity=0.005 Sum_probs=112.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC--C--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK--S--------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV 464 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 464 (648)
+++|...+.-..-+++-...++.-..+ . ...-++++..+.-.|.+.-.+.++++.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344555554444444444444433221 1 234567778888889999999999999987656667777788
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHH
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDY----HIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG--PGLSVLQSLLGACRI 538 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~ 538 (648)
.+.-...||.+.|..+|+...+.. ++.-.......+...|.-++++.+|...+.+++.. -++...|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888889999999999999765442 22222333334445566677888888888887733 344444544444556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+...|.+..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 788899999999999888875443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.17 Score=43.12 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
.--.|..++...|+..+|...|++...--+.-|......+.++....++...|...++.+.+...-.-++...-.+...|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 33445566666666666666666665533444555566666666666666666666666544311111234444555666
Q ss_pred hhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
...|+.++|+.-|+-.. .-|+...-.-...-+.++|+..++.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 66666666666665443 2244333222333344555444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.63 Score=44.55 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHh-cCCCCC--hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVR-----PDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKD-YHIEPS--PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~ 495 (648)
.+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...||+..|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556778889999999999999998764332 2221 2333444566778999999999988633 123223 44
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHhhCC
Q 006364 496 HYSCMVDMLGR--VGRLEEAEELVGQIP 521 (648)
Q Consensus 496 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 521 (648)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666776643 235677777777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.029 Score=47.59 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh-----hCCCccCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK-----SKGVRKEV 595 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 595 (648)
.+...++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.+++++++ +.|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4566777888899999999999999999999999999999999999999999999998774 34665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.2 Score=46.19 Aligned_cols=236 Identities=8% Similarity=0.069 Sum_probs=111.9
Q ss_pred CCChhhHHHHHHHhhcccChhhHhHHHHHHHHh-CCC--------CCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcc
Q 006364 54 VFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF-GLD--------SEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSV 124 (648)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 124 (648)
.|.+..|..+.......-.++.|...|-+...- |++ .+.....+=+.+| .|.+++|.+++-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466666766666655555566666555443211 111 1111122223332 47888888888888777643
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD----HVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVL 200 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (648)
|..+.+.| ++-...++++. -|-..| ...|+.+-..++....++.|.+.+..-.. ....
T Consensus 767 -----ielr~klg-DwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLG-DWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -----HHHHHhhh-hHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 44455555 55444443332 111111 12344444444444445555544443211 1123
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 006364 201 MSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGL 280 (648)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 280 (648)
+.+|.+...+++-+.+.+.+++ |....-.+..++.+.|.-++|.+.|-.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-------------------------------~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-------------------------------DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-------------------------------ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 4444444444444444444433 333333444555555665555544422
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHH--------------HHHHHHHhcCCcHHHHHHHHH
Q 006364 281 CIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWN--------------ALISGYAQNGLSLAAVQAFFG 346 (648)
Q Consensus 281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------~li~~~~~~g~~~~A~~~~~~ 346 (648)
.+.+ .+-+..|...+++.+|.++-++..-|.+.+.- --|..+.+.|++-+|.+++.+
T Consensus 878 ---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 878 ---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred ---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 1111 23345566666666666666655444332211 123344556666666677666
Q ss_pred hHh
Q 006364 347 VIK 349 (648)
Q Consensus 347 m~~ 349 (648)
|.+
T Consensus 949 mae 951 (1189)
T KOG2041|consen 949 MAE 951 (1189)
T ss_pred HhH
Confidence 654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.018 Score=55.26 Aligned_cols=82 Identities=6% Similarity=0.056 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDID 606 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 606 (648)
.++..|.-.+.+.+++..|.+.-++.++++|+|......-+.+|...|+++.|...++++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------ 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------ 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence 45667777788888899999999999999999999999999999999999999998887763
Q ss_pred ceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 607 GLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 607 ~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
..|.++.|...|..|..+++
T Consensus 320 ----------~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 320 ----------LEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------hCCCcHHHHHHHHHHHHHHH
Confidence 35666777777777777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.033 Score=45.26 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
...|+..+..+++.+|+..|++..|+++.+...+.|+++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4667888888888888888888888888888888888766677777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.47 Score=48.49 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCChhHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhH
Q 006364 162 FTSAASACGHEKNLELGKQI--HGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDA 239 (648)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a 239 (648)
|+..=++|.+..++.--+-+ ++.+++.|-.|+... +...++-.|++.+|-++|.+- |.-..|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~-------------G~enRA 664 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS-------------GHENRA 664 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc-------------CchhhH
Confidence 33344445554444433322 334455565565543 345566677888888887654 344567
Q ss_pred HHHHHHHH
Q 006364 240 VSLFKEMR 247 (648)
Q Consensus 240 ~~~~~~m~ 247 (648)
+++|..|+
T Consensus 665 lEmyTDlR 672 (1081)
T KOG1538|consen 665 LEMYTDLR 672 (1081)
T ss_pred HHHHHHHH
Confidence 77776665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0032 Score=46.58 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKM----EPA---GSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555555432 111 1345666666666666666666666554
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.16 Score=40.56 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
+.-.|..++..++..+...+ .+..-+|.++.-....-+-+-..+.++..-+-|.+.|- .....++.+|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch--
Confidence 34567888888888887763 34555666665555555556666666666444333331 1122345555555532
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
.......+.+...+|.-+.-.+++..+.+.+..+|+....++++|.+.|+..++.+++.+.-++|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344556778889999999999999988877888999999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.2 Score=43.91 Aligned_cols=432 Identities=12% Similarity=0.095 Sum_probs=227.2
Q ss_pred ccCCChhHHHHHhhcCCC-----CC----cchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHH--hhccc
Q 006364 5 CKSGQFDKALCIFNNLNN-----PD----IVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSF--CLDHE 71 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~-----p~----~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~ 71 (648)
-+.+++.+|..+|.++-+ |. .+.-+.+|++|-... .....+....+. .| ...|-.+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 467899999999998863 22 223567888887776 333333333332 22 3344445444 34678
Q ss_pred ChhhHhHHHHHHHHh--CCC------------CCcchHHHHHHHHHhCCChhHHHHHhccCCC--------CCcchHHHH
Q 006364 72 GFLFGLQLHSLIVKF--GLD------------SEVYVGNALITMYSRWGRLVEARRVFDEMPN--------KDSVSWNAI 129 (648)
Q Consensus 72 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 129 (648)
.++.|.+.+..-... +.. +|...-+..++++...|++.+++.++++|.+ -|..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888777655 322 2444556678889999999999999998864 277788875
Q ss_pred HHHHHcC-------CC-------ChHHHHHHHHHHHHC------CCCCChhhHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 006364 130 LSGYTQD-------GD-------YGVEAILALIEMMRK------GLRLDHVSFTSAASACGHE--KNLELGKQIHGVSIK 187 (648)
Q Consensus 130 i~~~~~~-------g~-------~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~ 187 (648)
+-.+.++ +. .++-++-...+|... .+.|-...+..++....-. ..+.--.+++....+
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 5444332 10 112222222223221 2344444444444433221 223333444444444
Q ss_pred hcCCCCcc-hHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006364 188 MGYGTHVS-VGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAIS 266 (648)
Q Consensus 188 ~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 266 (648)
.-+.|+-. +...|+.-+.+ +.+++..+.+.+..- + .+.+.+ -=..+|..++..+.
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--------------~----i~~Lke----~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--------------K----IEKLKE----ELIDRFGNLLSFKV 309 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--------------h----HHHHHH----HHHHHHHHHHHHHH
Confidence 44555432 22333333333 333333332221100 0 011111 12346778888888
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCchhHHH-------HHHHHHh----cCChHHHHHHHhhcCCCCccc---HHHHH---H
Q 006364 267 IGNLVKEGRMIHGLCIKTNFLSEPSVCNC-------LITMYAR----FESMQDSEKVFDELSCREIIS---WNALI---S 329 (648)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~----~g~~~~a~~~~~~~~~~~~~~---~~~li---~ 329 (648)
+.++...|.+.+..+.-. .|+..+... +.++.+. .-+..+=..+|......|+.. -.-|+ .
T Consensus 310 k~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 310 KQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 888888888888776543 343333222 2222221 112333344555555444421 11122 2
Q ss_pred HHHhcCC-cHHHHHHHHHhHhCCCCCHHHHHHHHH----Hhcc---CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 330 GYAQNGL-SLAAVQAFFGVIKESKPNAYTFGSVLN----AVGA---AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 330 ~~~~~g~-~~~A~~~~~~m~~~~~p~~~~~~~ll~----a~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
-+-+.|. -++|+++++...+-.+-|...-+.+.. +|.+ .. ....-..+-+.+.+.|++|-.+.-.-+.+
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~--~~~rLlkLe~fi~e~gl~~i~i~e~eian- 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMH--AIPRLLKLEDFITEVGLTPITISEEEIAN- 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcCCCcccccHHHHHH-
Confidence 2334554 788999998887733334433333321 1111 11 23333344444445555543332211111
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.+++|+- +..+|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++
T Consensus 465 -----~LaDAEy-------------------Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 465 -----FLADAEY-------------------LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred -----HHHHHHH-------------------HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1122222 3457888887765555555 7888888888887888888899999988
Q ss_pred HHhHHhcCCCCChHHHHHH
Q 006364 482 DSMLKDYHIEPSPDHYSCM 500 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l 500 (648)
..+ +|+..+++.=
T Consensus 519 ~~L------P~n~~~~dsk 531 (549)
T PF07079_consen 519 QKL------PPNERMRDSK 531 (549)
T ss_pred HhC------CCchhhHHHH
Confidence 754 6666666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0076 Score=44.56 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-----GG---PG-LSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+|+.+...|.+.|++++|+..+++.. .. |+ ..++..+...+...|++++|++.++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6789999999999999999999987654 11 33 55788899999999999999999998753
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.077 Score=52.48 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
.|+.....+..+....++++.|...++++..++|+.+.+|...+.+..-.|+.++|.+.+++
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444445555555555555555555555555555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.14 Score=46.10 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCcHHHH
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 580 (648)
+...+.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 355678899999999999999999888644 5678888899999887443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.57 Score=42.23 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
+..-|.+.|.+..|..-++.+++++.-.|. ......|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566677777777777777766443333 44556666666666666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.1 Score=43.02 Aligned_cols=244 Identities=15% Similarity=0.083 Sum_probs=113.8
Q ss_pred cCChHHHHHHHhhcCCC-Cc--ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHH
Q 006364 303 FESMQDSEKVFDELSCR-EI--ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRC 379 (648)
Q Consensus 303 ~g~~~~a~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~ 379 (648)
.|+.+.|.+-|+.|... .. .-...|.-.-.+.|..+.|..+-++.-..-+--.......+...+..| +++.+.++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g--dWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG--DWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC--ChHHHHHH
Confidence 46777777777766532 11 112222223334566666655555544433334455566666666666 77777776
Q ss_pred HHHHHHhC-CCCchhH--HHHHHHHHhh---cCCHHHHHHHHhhcC--CCChh-HHHHHHHHHHhCCChHHHHHHHHHHH
Q 006364 380 HSHIIKVG-LDSDPIV--GSALLDMYGK---RGSIFESQRVFNETQ--EKSEF-AWTAIISALARHGDYESVMNQFKEME 450 (648)
Q Consensus 380 ~~~~~~~~-~~~~~~~--~~~li~~~~~---~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (648)
.+.-.... +.++..- -..|+.+-+. ..+...|...-.+.. .||.+ .--.-..++.+.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 66554322 2222211 1111111110 112233333222211 23322 22223455666777777777777666
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH
Q 006364 451 NKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSV 528 (648)
Q Consensus 451 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 528 (648)
+....|+.. .+-...+.|+. ++.-++...+--.++|+ .+....+..+-...|++..|..--+... ..|....
T Consensus 291 K~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 654444431 11123344432 22222222222234555 5555556666666666665554444332 3456666
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 006364 529 LQSLLGACRI-HGNVEMGERIADALMK 554 (648)
Q Consensus 529 ~~~l~~~~~~-~g~~~~a~~~~~~~~~ 554 (648)
|..|...-.. .||-.++.+.+.+..+
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 6555554333 3666666665555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.21 Score=45.10 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=95.0
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH----
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA---- 397 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 397 (648)
.-+.++..+.-.|.+.-.+..+++..+ ..+.++.....+.+.-.+.| +.+.+...++...+..-..+...++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 445666777777888888888888888 55667777777888888888 88888888887776543444333333
Q ss_pred -HHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006364 398 -LLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL 462 (648)
Q Consensus 398 -li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 462 (648)
....|.-..++..|...|+++... |+..-|.-.-++.-.|+...|++.++.|... .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 334455677888888888777653 5666666666667778888888888888873 45544444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.12 Score=49.50 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH----HHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCC-CCChH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEM----ENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHI-EPSPD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~ 495 (648)
.|..|.+.|.-.|+++.|+..-+.= ++-|-+.. ...+..+..++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666677777777654432 22232222 245666777777778888888777764311 111 11244
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-Cch
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME-----PA-GSG 561 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----p~-~~~ 561 (648)
..-+|.+.|.-...+++|+..+.+-. .-.....+-+|..++...|+.+.|....++.++.. |. ...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 45566777777777788877765432 11234456677888888888888887777766532 22 233
Q ss_pred hHHHHHHHHHhcCCc
Q 006364 562 SYVLMSNLYAEKGDW 576 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~ 576 (648)
.-..|.+.-...|.-
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 445555555555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=41.50 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHhhcCCHHHHHHHHhhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHh
Q 006364 501 VDMLGRVGRLEEAEELVGQIPG----G-PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAE 572 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 572 (648)
.....+.|++++|.+.|+.+.. . -...+-..|+.++...++++.|...+++.++++|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3444577888888888776651 1 23345566788899999999999999999999988765 34444444444
Q ss_pred c
Q 006364 573 K 573 (648)
Q Consensus 573 ~ 573 (648)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=2 Score=41.87 Aligned_cols=206 Identities=12% Similarity=0.035 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHH--HHhhcCCHHHHHHHHhhcCCCChh---------------HHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLD--MYGKRGSIFESQRVFNETQEKSEF---------------AWTAIISALA 434 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~ 434 (648)
+.+.+..+-..+.+..-. ..+...++ ++--.++.+.|...|++...-++. .|..=.+-..
T Consensus 184 ~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred cchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 666776666665554321 11112222 223356788888888876643222 2333445567
Q ss_pred hCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 435 RHGDYESVMNQFKEMENK---GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+.|++..|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.-.+... .+.|. +..|..-..++...++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998863 456667778888888899999999999888775 56776 66666667778888999
Q ss_pred HHHHHHHhhCC-CCCCH---HHHHHHHHHHH---------------HcCCHHHHHHHHHHHHhcCCCCc--------hhH
Q 006364 511 EEAEELVGQIP-GGPGL---SVLQSLLGACR---------------IHGNVEMGERIADALMKMEPAGS--------GSY 563 (648)
Q Consensus 511 ~~A~~~~~~~~-~~~~~---~~~~~l~~~~~---------------~~g~~~~a~~~~~~~~~~~p~~~--------~~~ 563 (648)
++|.+-+++.. ...+. .+|....-++. ...+.+.....-+.++...|+-. .-+
T Consensus 338 e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kF 417 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKF 417 (486)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHH
Confidence 99999887643 22222 22222222222 11222222222233344445422 136
Q ss_pred HHHHHHHHhcCCcHHHHHHH
Q 006364 564 VLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~ 583 (648)
...+++|...++..+..+.-
T Consensus 418 kevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 418 KEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHhcCHHHHhhcc
Confidence 67788888888887776654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.084 Score=50.88 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=98.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
.+.|.+.|++..|...|++.... -. +...-+.++..... ..-..++..+.-++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876642 00 01111111111111 1123456777888899999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH-HHHHHHH
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV-AILRKGM 586 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 586 (648)
+.+|++..++.. .++++-.+-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888765 4577778778889999999999999999999999999999988888888777666554 7778877
Q ss_pred hh
Q 006364 587 KS 588 (648)
Q Consensus 587 ~~ 588 (648)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.094 Score=42.62 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhH--------------HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSML--------------KDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
|..++..++.++++.|+++....+.+..- ......|+.....+++.+|+..|++..|+++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455666666666666666665554431 112344555555566666666666666655554332
Q ss_pred ---CCCCHHHHHHHHHH
Q 006364 522 ---GGPGLSVLQSLLGA 535 (648)
Q Consensus 522 ---~~~~~~~~~~l~~~ 535 (648)
.+-+..+|..|+.-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 23335555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.3 Score=45.36 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC---CHHHHHHHHhhCC--CCCCHHHHH
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG---RLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
|...|..|..+|...|+.+.|..-|....+ +.|+ ...+..+..++.... ...++..+++++. .+.++.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 456666666666666666666666666643 3443 555555555543332 3455666666654 233444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
-|...+...|++.+|...++.+++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 555666777777777777777777666553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=46.96 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=78.5
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----------
Q 006364 410 ESQRVFNETQ--EKSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG---------- 472 (648)
Q Consensus 410 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 472 (648)
..+..|.... ++|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566555 56777888888877654 556666777899999999999999999999876543
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 473 ------MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 473 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
+-+-++.++++|. .+|+.||.++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2345789999995 559999999999999999999864
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.082 Score=52.23 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGL----SVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
...+..+..+|.+.|++++|+..+++.. ..|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444455555555555555555554422 23332 23455555555555555555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.12 Score=47.22 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP----GGP-GLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a 545 (648)
|++..|..-|...++.|.-.+ ....+-.|..++...|++++|...|..+. ..| -+..+-.|.......|+.+.|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 445555555544444422111 13333344444444444444444443321 111 123344444444455555555
Q ss_pred HHHHHHHHhcCCCCc
Q 006364 546 ERIADALMKMEPAGS 560 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~ 560 (648)
...++++.+.-|..+
T Consensus 235 ~atl~qv~k~YP~t~ 249 (262)
T COG1729 235 CATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHCCCCH
Confidence 555555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=4.4 Score=42.72 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=56.5
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMY 402 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (648)
+.+--+.-+..-|+..+|.++-.+. --||...|---+.+++..+ ++++-+++-.. ..++.-|.-++..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~~aLa~~~--kweeLekfAks------kksPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKLTALADIK--KWEELEKFAKS------KKSPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHHHHHHHHHhhh--hHHHHHHHHhc------cCCCCCchhHHHHH
Confidence 3444445555555555555544333 2355555555555555555 55444433221 11244455566666
Q ss_pred hhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.+.|+.++|.+.+.....-. -...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHH
Confidence 66667777766665554311 3455666666666666543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.15 Score=43.24 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH----HhcCCCCChHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML----KDYHIEPSPDH 496 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 496 (648)
...++..+...|++++|+.+.+++... -+-|...|..++.++...|+...|.+.|+.+. +++|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666777777777777777764 23456677777777777777777777776653 34577776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.2 Score=40.88 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=105.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHH-HH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKG-VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDH-YS 498 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~ 498 (648)
+-...|...++...+....+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.=... -||... -.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345678889998888888999999999999988 6778888888887554 57888999999876655 355333 24
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCCCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIPGG--PG--LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
-.+.-+.+.++-+.|..+|+....+ .+ ..+|..++..-..-|++..+..+-+++.+.-|...
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 4566677889999999999865411 22 56889999988999999999988888888888753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=4.7 Score=42.54 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLG 534 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 534 (648)
.-...|.+--+.-+...|+-.+|.++-.+. . .||...|-.-+.+++..+++++-+++-+.+.. +.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHH
Confidence 334445566666777889999998887665 2 58888888889999999999999998887763 344677889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
+|.+.|+..+|.+++-+.-.+ .-...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 999999999999987765332 157788999999999887653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.28 E-value=6 Score=44.13 Aligned_cols=111 Identities=12% Similarity=0.006 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVD 502 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~ 502 (648)
.|.+...-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+-.++. ..-+ ..+-..|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS----EGKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHH
Confidence 344444444445555555555544321 1223556666666666666665552 1112 222355666
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.+...++.-+|-++..+....|.. .+..+++...+++|.++.....
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 666777777777776665544332 2233445555666666655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.15 Score=46.74 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
.|+.-+..| +.|++..|..-|...+... +-+ ...+-.|..++...|++++|..+|..+.+.++-.|. ++.+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466555544 5677999999999988852 211 234556888999999999999999999999888887 6899999
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCC-CCH
Q 006364 501 VDMLGRVGRLEEAEELVGQIPGG-PGL 526 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~~-~~~ 526 (648)
.....+.|+.++|...+++...+ |+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999887633 443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.15 Score=46.49 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=83.7
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHcC-----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCCh-------
Q 006364 110 EARRVFDEMP--NKDSVSWNAILSGYTQD-----GDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNL------- 175 (648)
Q Consensus 110 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------- 175 (648)
-.++.|...+ ++|..+|-+.+..|... + ..+=.-..++.|.+.|+.-|..+|..||+.+-+..-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~-HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRT-HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456677776 57888898888888654 3 5555566678899999999999999999987654422
Q ss_pred ---------hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH-HHHHHHhcCC
Q 006364 176 ---------ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTG-DANKVFRRMH 221 (648)
Q Consensus 176 ---------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~ 221 (648)
+=+..++++|..+|+.||..+-..|++++++.|-.- +..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 236789999999999999999999999999887532 3334333333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.22 Score=39.66 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=53.9
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC-CH---HHHHHHHHHHHHc
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGP-GL---SVLQSLLGACRIH 539 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~~l~~~~~~~ 539 (648)
+.+..|+.+.|++.|.+.. .+-|. ...||.-..++--.|+.++|++-+++.. ..| .- ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4456666666666666654 34554 5666666666666666666666555433 111 11 1222223345556
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
|+.+.|..=|+.+-+++.+-..--....|-|+.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAA 161 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAA 161 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHH
Confidence 666666666666666655444444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.13 E-value=7.1 Score=43.64 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=94.1
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 006364 304 ESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHI 383 (648)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~ 383 (648)
+++++|+.-+..+. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+..-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL-------------- 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHL-------------- 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHH--------------
Confidence 45666666665554 223444444445666777777665 577777776666655321
Q ss_pred HHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--H
Q 006364 384 IKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT--F 461 (648)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 461 (648)
.+ ...|+--.-+|.++|+.++|.+.| ...|++++|+.+-.+|.. .-|... -
T Consensus 950 ~~------~~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 RE------ELMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HH------hccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 11 112233445688888888887654 556788888887777642 222221 1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
..|..-+...++.-+|-++..+...+ | .--+..|+++..+++|.++.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 34556667777777777777665432 2 233556777777888877766544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.3 Score=41.08 Aligned_cols=118 Identities=9% Similarity=0.074 Sum_probs=84.3
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHHcCC
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS---LLGACRIHGN 541 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~ 541 (648)
......|+..+|...|+..... .|+ ...-..|+.+|...|+.+.|..++..++.......|.. -+..+....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456778899999999888754 554 66777888999999999999999999985543333333 2333444444
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
......+ +.-..-+|+|...-..++..|...|+.++|.+.+=.+.
T Consensus 219 ~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 219 TPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4433333 33345689999999999999999999999988765554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.4 Score=45.43 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSCM-VDMLGRVGRLEEAEELVGQIPG-G-----PGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~ 543 (648)
....+.|.++++.+.+. -|+...|... ...+...|++++|.+.+++... + .....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667777777777654 5664444333 4555667777777777775441 1 11223334555666777888
Q ss_pred HHHHHHHHHHhcCCCCchhHH-HHHHHHHhcCCc-------HHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEPAGSGSYV-LMSNLYAEKGDW-------EMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 588 (648)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888776655444444 444556666777 777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.082 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.87 Score=42.78 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HhcccCcHHH
Q 006364 404 KRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV--LT--VCGRNGMIHK 476 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~ 476 (648)
-.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+ +- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34666666666666654 26667777777777777777777777776653 34554333222 22 2356677777
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPG-------LSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
|.+.-++.. .+.|. .-.-.++...+.-.|++.++.++..+-...-+ ..-|... -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 777766654 44443 44555566666677777777777766542211 1112221 122334677777777
Q ss_pred HHHHH--hcCCCCc
Q 006364 549 ADALM--KMEPAGS 560 (648)
Q Consensus 549 ~~~~~--~~~p~~~ 560 (648)
|++-+ +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76533 3444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.61 Score=47.38 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
..+.|+++.|.++.++.. +...|..|......+|+++.|++++++
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334455555544444332 344455555555555555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.3 Score=44.17 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHh--------c-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh
Q 006364 439 YESVMNQFKEMEN-KGVRPDS-ITFLSVLTVC--------G-RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR 506 (648)
Q Consensus 439 ~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~--------~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~ 506 (648)
.+.|+.+|.+... ..+.|+- ..|..+..++ . ...+..+|.++-+... .+.|+ ......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 5677888888872 2356664 3333222221 1 1345566777776665 45665 7777788888888
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHhcCCcHHHHHH
Q 006364 507 VGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV--LMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 507 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~ 582 (648)
.|+++.|..+|++.. .+....+|......+.-.|+.++|.+.++++++++|....+-. ..++.|... ..++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 888999999999865 4445667888888888999999999999999999998655433 333346554 45667776
Q ss_pred HH
Q 006364 583 RK 584 (648)
Q Consensus 583 ~~ 584 (648)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 63
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.71 E-value=4.9 Score=39.71 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHhhcCCHHHHHHHHhh-CCCCCCHHHH-HHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH-IEPSPDHYSCMVDMLGRVGRLEEAEELVGQ-IPGGPGLSVL-QSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~ 534 (648)
...|...+.+..+..-++.|..+|-+..+. + +.|++.++++++.-++ .|+..-|..+|+. |..-||...| ...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 356777888888888899999999999776 5 6678999999998775 6888899999986 4444665554 56777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+...++-+.|..+|+...+.-..+ ..+|..++.--..-|+...|..+-++|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7888899999999999776543222 56788888777778888777666666543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.073 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=40.63 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=52.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVG 508 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g 508 (648)
-+++..|+.+.|++.|.+.... .+-....||.-..++.-.|+.++|+.-+++..+--|-... -..|..-...|-..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3556677777777777776663 2334566777777777777777777777766654332211 223333344555666
Q ss_pred CHHHHHHHHhh
Q 006364 509 RLEEAEELVGQ 519 (648)
Q Consensus 509 ~~~~A~~~~~~ 519 (648)
+.+.|..-|+.
T Consensus 130 ~dd~AR~DFe~ 140 (175)
T KOG4555|consen 130 NDDAARADFEA 140 (175)
T ss_pred chHHHHHhHHH
Confidence 66666665554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.62 Score=44.21 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCC--ChHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMEN-KGVRPDS---ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEP--SPDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p--~~~~ 496 (648)
+|-.+..++-+.-++.+++.+-+.-.. .|..|.. ....++-.|+...+.++++++.|+...+--. -.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433322 2223311 2223344555555666677766666543211 112 1445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP-------GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKME------PA 558 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~ 558 (648)
|..|...|.+..++++|.-+..+.. .+.- ..+...+.-+++..|....|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6666777777777666655443321 1111 1122334455666666666666655555432 22
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 559 GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
.......++++|...|+.+.|..-+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHH
Confidence 2334456667777777666554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.1 Score=37.25 Aligned_cols=193 Identities=17% Similarity=0.141 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666777777777777666543 22445566666667777777788888777776433331 12222222
Q ss_pred -HhcccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-C-CHHHHHHHHHHHHH
Q 006364 467 -VCGRNGMIHKGRHLFDSMLKDYHIEP----SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GG-P-GLSVLQSLLGACRI 538 (648)
Q Consensus 467 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~-~~~~~~~l~~~~~~ 538 (648)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.... .. . ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777888888888887743 233 24444444445667778888888777654 22 2 35667777777788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+.+...+.......|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888777666677777777766777887777765543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=9.2 Score=41.27 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 299 MYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
.+.+.+++.....++..- ..+...-.....+....|+.++|......+-......+.....++..+.
T Consensus 108 ~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~ 174 (644)
T PRK11619 108 ELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 344455555555532221 2233334445555666666666655555554422223334444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.3 Score=35.90 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=59.4
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 545 (648)
-...++.+++..++..+. -+.|. ...-..-...+.+.|++.+|..+++++... |....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 356778889999988885 45776 444444566678899999999999988743 5555556777777665544444
Q ss_pred HHHHHHHHhcCC
Q 006364 546 ERIADALMKMEP 557 (648)
Q Consensus 546 ~~~~~~~~~~~p 557 (648)
....+.+++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 555555665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.2 Score=44.16 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-------SEFAWTAIISALARHGDYESVMN 444 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 444 (648)
+.+.+..++..+.+.- |-+....-.-...+...|++++|.+.|+..... ....+--+.-.+....++++|.+
T Consensus 248 ~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 6677777777766542 222222333445566778888888888754421 22334445556667778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHh-cccCcH-------HHHHHHHHHh
Q 006364 445 QFKEMENKGVRPDSITFLSVLTVC-GRNGMI-------HKGRHLFDSM 484 (648)
Q Consensus 445 ~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~m 484 (648)
.|.++.+.. .-+..+|..+..+| ...|+. ++|.++|.+.
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 888887642 23444554444444 445555 6666666655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.99 Score=38.16 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=45.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 511 (648)
+.+.|++++|..+|.-+...+. -|..-|..|..+|-..+.+++|+..|..... +.++ +..+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~---l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT---LLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCCCccchHHHHHHHhCCHH
Confidence 3455666666666666554221 1222334444444556666666666665532 1221 333344556666666666
Q ss_pred HHHHHHhhCCCCC
Q 006364 512 EAEELVGQIPGGP 524 (648)
Q Consensus 512 ~A~~~~~~~~~~~ 524 (648)
+|...|.....+|
T Consensus 123 ~A~~~f~~a~~~~ 135 (165)
T PRK15331 123 KARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHhCc
Confidence 6666666554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.78 E-value=2.1 Score=40.99 Aligned_cols=130 Identities=12% Similarity=0.273 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh--c----CCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCC
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK--R----GSIFESQRVFNETQEK-------SEFAWTAIISALARHGD 438 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~ 438 (648)
.++....+++.+.+.|+..+..+|-+....... . .....|..+|+.|++. +-.++.+|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 445555666666666666666555443222222 1 1345677777777752 44455555444 2222
Q ss_pred ----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCc--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 439 ----YESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGM--IHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 439 ----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
.+.+..+|+.+...|+..+. .....+|.-+..... +.++.++++.+.+. ++++...+|..+.-+-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 35667788888888877654 333344433322222 45788888888776 9998888887765443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=8.2 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=65.5
Q ss_pred ChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHH----HHHHhCCChhHHHHHhccCCCCCcchHHHHHH
Q 006364 56 DAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALI----TMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131 (648)
Q Consensus 56 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 131 (648)
..-+...-|..+.+...++.|..+-.. .+. |......++ +-+.+.|++++|...+-+-..- .--..+|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~ 405 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIK 405 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHH
Confidence 344556667777777777777765443 332 333333333 4444678888887766543220 11123455
Q ss_pred HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHH
Q 006364 132 GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHG 183 (648)
Q Consensus 132 ~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (648)
-|.... ...+-...++.+.+.|+. +...-+.||.+|.+.++.+.-.++..
T Consensus 406 kfLdaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 406 KFLDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HhcCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 555444 555555666666666654 33444566777777666665544443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.38 Score=41.53 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=63.5
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+-+.+.|++++|..-|.... .++. ...|..-..+..+.+.++.|..-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556677777776665543 1211 2233344456678888999999999999999988888888889999999
Q ss_pred CcHHHHHHHHHHhh
Q 006364 575 DWEMVAILRKGMKS 588 (648)
Q Consensus 575 ~~~~a~~~~~~m~~ 588 (648)
++++|++=++++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988887765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.59 E-value=7 Score=37.30 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=9.3
Q ss_pred CCCChhHHHHHHHHHHH
Q 006364 171 HEKNLELGKQIHGVSIK 187 (648)
Q Consensus 171 ~~~~~~~a~~~~~~~~~ 187 (648)
+.|+++.|..++.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 44555555555555544
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.34 E-value=3.2 Score=34.63 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=53.1
Q ss_pred HHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCC
Q 006364 60 YSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDY 139 (648)
Q Consensus 60 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 139 (648)
...++..+...+.......+++.+.+.+ ..++..+|.++..|++.+ .......+.. ..+......+++.|.+.+ .
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~-l 84 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK-L 84 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC-c
Confidence 3456666666667777777777777766 366677888888887653 3334444442 233344455666666666 6
Q ss_pred hHHHHHHHHHH
Q 006364 140 GVEAILALIEM 150 (648)
Q Consensus 140 ~~~a~~~~~~m 150 (648)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.4 Score=33.84 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhC
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARH 436 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 436 (648)
.++..+...+.......+++.+... +....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 4444554455555555555544322 233455555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.12 E-value=6.9 Score=35.86 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..-|.+.|.+..|..-++.+++.-|+.+. .+..+.++|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456678899999999999999988766544 566777889999999999988776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.7 Score=34.74 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
....+.|++++|.+.|+.+... .+.. ...-..++.++.+.|++++|...++..++-+.-.|+ ..|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3444566677777777666654 2211 244455666666677777777776666655333333 2333334443332
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 508 GRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 508 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
...+.. +..+. ..=+..+....|...|+.+++.-|++.
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 11111 000112235677788888888888764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.4 Score=42.58 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
..+.+.-++.-++..+ +.||-.+...++ +-..+.-+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3445555555555555 566654443333 334455677888888776543 1 0000000 00000111 011
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 516 LVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA--GSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 516 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|. +..++..|++++...+++.++..++.+-.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111111233344455667777778888888888887766654 44577778888888888888877777643
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.96 E-value=6 Score=42.56 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhh--
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG-LDSDPIVGSALLDMYGK-- 404 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 404 (648)
...+.-.|+++.|++.+.+ ......|.+.+...+.-+.-.. ...... ..+.... -.|.+.-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~--~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLR--VSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCC--CCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3456778999999999887 2256677778877777665544 222111 1111111 11222557778888876
Q ss_pred -cCCHHHHHHHHhhcCC
Q 006364 405 -RGSIFESQRVFNETQE 420 (648)
Q Consensus 405 -~g~~~~A~~~~~~~~~ 420 (648)
..+..+|.+.|-.+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4577788887766553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.87 E-value=3.1 Score=42.39 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=88.0
Q ss_pred HhcCChhhHHHHHHHH-HHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 006364 231 MISMNREDAVSLFKEM-RLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDS 309 (648)
Q Consensus 231 li~g~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 309 (648)
++.++++++.+..+.= .-..+ | ....+.+++-+-+.|..+.|.++-..-. .-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 3337777766665411 11111 2 4447788888888999998887754321 234567789999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 310 EKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.+...| +.+.-.++.......|-
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g--~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTG--DREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT---HHHHHHHHHHHHHTT--
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhC--CHHHHHHHHHHHHHccC-
Confidence 99887765 566899999999999999999999987753 445555555555 55555555444444331
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVF 415 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (648)
++....++.-.|++++..+++
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHH
Confidence 223333333445555544444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.77 E-value=7.9 Score=41.54 Aligned_cols=139 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+.-...| ..|+.+|.+.++.++-.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHH
Confidence 334455666665555433211000 1234444444445555555555555554433222 3455555666665555554
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.+..- + |.. ..-....+..+.+.+-+++|..+-.+.... ..+.. -.+...+|+++|.+.++.
T Consensus 454 I~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h--e~vl~---ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 454 ISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATKFKKH--EWVLD---ILLEDLHNYEEALRYISS 515 (933)
T ss_pred HhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC--HHHHH---HHHHHhcCHHHHHHHHhc
Confidence 44331 1 111 111223344445555555555554444321 11111 122344556655555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.22 Score=30.03 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999988888743
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.64 E-value=12 Score=37.24 Aligned_cols=149 Identities=9% Similarity=0.041 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRP---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDH 496 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 496 (648)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|+..++...+. .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577888888888888888888888877643211 2222333344445567778888877777652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEEL-VGQIPGGPGLSVLQSLLGACRIH------GNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+.+.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333334444444 788889999999999999988888888887
Q ss_pred HHhc
Q 006364 570 YAEK 573 (648)
Q Consensus 570 ~~~~ 573 (648)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.46 E-value=12 Score=36.93 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC---Cc----ccHHHHHHHHHh---cCCcHHHHHHHHHhHh-CCCCCHHHHHHHH
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR---EI----ISWNALISGYAQ---NGLSLAAVQAFFGVIK-ESKPNAYTFGSVL 362 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll 362 (648)
..++-+|....+++...++.+.+... ++ ..--...-++-+ .|+.++|++++..+.. ...+++.||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677778888888888877643 11 111122334445 7788888888888555 6667777776555
Q ss_pred HHh
Q 006364 363 NAV 365 (648)
Q Consensus 363 ~a~ 365 (648)
..+
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.6 Score=35.08 Aligned_cols=58 Identities=9% Similarity=0.240 Sum_probs=27.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
.+..+...|+-++--+++.++... -+|++.....+..||.+.|+..++.+++.++.++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344445555555555555554432 2445555555555555556655555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.76 Score=42.93 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..++..+...|+.+.+...++++.+.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777888888888877777777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.30 E-value=8.5 Score=34.86 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----CCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKM----EPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
.+.-..|+..|++.++.--+. .|++..+...|...|- .|+.+++.++.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 344445566666666654432 2445555555555553 35555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.27 E-value=10 Score=35.60 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=93.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
......|++.+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888877642 222344556677778888888888888776322 0011112222345566666666
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCcHH-HHHHHHHH
Q 006364 511 EEAEELVGQIPGGP-GLSVLQSLLGACRIHGNVEMGERIADALMKM--EPAGSGSYVLMSNLYAEKGDWEM-VAILRKGM 586 (648)
Q Consensus 511 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 586 (648)
.+...+-.+.-..| |...-..+...+...|+.+.|...+=.+++. +-.+...-..|..++.-.|.-+. +...+.+|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 65555555554444 5556666777777888887777665555543 34566777777888777774443 44444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.12 E-value=12 Score=37.85 Aligned_cols=56 Identities=5% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVR-PDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 455555666666666666666543111 12234455666666666666666666554
|
The molecular function of this protein is uncertain. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.36 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+|..+...+...|+++.|...+++.+++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666777777777777777766663
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.9 Score=40.61 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=121.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHH----HHHHHHHhhcCC
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHY----SCMVDMLGRVGR 509 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~~l~~~~~~~g~ 509 (648)
--+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... -.|+...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578899999999999875 6778888888889999999999999999888644 24554333 334455678999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA----GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
+++|++.-++.. .+.|.-.-.++...+...|+..++.+...+-...-.. -.-.|-..+-.|...+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998876 3455656677788888999999999887775443321 1335777888888999999999999
Q ss_pred HHHhhCCCccCCcee
Q 006364 584 KGMKSKGVRKEVGFS 598 (648)
Q Consensus 584 ~~m~~~~~~~~~~~s 598 (648)
++=.-..+.++.+.+
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 765444555665533
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.048 Score=46.03 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChH
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGV 141 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 141 (648)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|-+.| .++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~-l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG-LYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT-SHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc-hHH
Confidence 45677778888999999999999887777889999999999999999999999985443 44466777777888 888
Q ss_pred HHHHHHHHHH
Q 006364 142 EAILALIEMM 151 (648)
Q Consensus 142 ~a~~~~~~m~ 151 (648)
++.-++.++-
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8887777653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.72 E-value=18 Score=37.43 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=126.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVR--PDSITFLSVL 465 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll 465 (648)
+..+|..-++.-.+.|+.+.+.-.|+...-| -...|--.+.-.-..|+.+-|-.++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888899999999999888765 2345655555555568888888887776654333 3333333332
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHhhCC-CCCCHHHHHHHH----H-H
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE---ELVGQIP-GGPGLSVLQSLL----G-A 535 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~ 535 (648)
+...|+.+.|..+++...+++ |+ ...-..-+....+.|..+.+. +++.... .+-+..+...+. . .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 466789999999999998763 76 444444566777889988888 5555433 233333332222 2 2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 455788999999999999999999999999999988776
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.4 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=10 Score=33.73 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 006364 405 RGSIFESQRVFNETQ--EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.|-..-|.-=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444322 23 3457888888888889999999999888774 332 22222222345567888888876
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG- 559 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 559 (648)
|-..-+.-.-.|=...|-.++. +.-+..+|..-+.+--.+.|...|...+-.+.- |... -+.+++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 6665443223333444444433 344666666543332224555667665544322 2221 133444444333332
Q ss_pred ------chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 ------SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+|.-|+.-|...|+.++|..+++....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 46899999999999999999999986543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.15 E-value=8.7 Score=35.75 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++.....|...|.+.+|.++-++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445678999999999999999999999999999999999999999888888888774
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.9 Score=40.02 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcC--CCC----hhHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhCCChH
Q 006364 141 VEAILALIEMMRKGLRLDHVSFTSAASACGH--EKN----LELGKQIHGVSIKMGY---GTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 211 (648)
.+.+.+++.|.+.|.+-+..+|-+..-.... ..+ ...++.+|..|++... .++-..+.+|+.. ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4555667777888888777777653333322 222 3456677777776532 2233333333322 222221
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcC-Cc--hHHHHHHHHHHHHhcCC
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIG-NL--VKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~-~~--~~~a~~~~~~~~~~~~~ 287 (648)
. + .+++...|+.+...|+..+.. .+.+-+-+++.. .. ..++..+++.+.+.|++
T Consensus 157 ~---l-------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 157 E---L-------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred H---H-------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 1 1 244556677777777665333 333333333222 22 34566777777777777
Q ss_pred CCchhHHHHH
Q 006364 288 SEPSVCNCLI 297 (648)
Q Consensus 288 ~~~~~~~~li 297 (648)
+....|..+.
T Consensus 215 ik~~~yp~lG 224 (297)
T PF13170_consen 215 IKYMHYPTLG 224 (297)
T ss_pred cccccccHHH
Confidence 7776665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.98 E-value=15 Score=35.06 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISAL---ARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
.-+..+.+.++.+.+.+++..|... ....+...+..+ .. .....|...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3344444455555665555555432 122333333333 22 2234555555555544444443
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.85 E-value=16 Score=35.21 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHhcCCcHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a 579 (648)
..+..++.+|...|.-++-
T Consensus 332 K~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 3566778888777765543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.75 E-value=13 Score=33.83 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHH-HHHhCCChHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKV-GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIIS-ALARHGDYESVMNQF 446 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~ 446 (648)
....+...+...... ........+......+...+++..+.+.+...... +......... .+...|+++.|...|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (291)
T COG0457 74 RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153 (291)
T ss_pred cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444443333321 23334445555666666667777777777766542 2223333334 788899999999999
Q ss_pred HHHHHCCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 447 KEMENKGVRP----DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 447 ~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
++... ..| ....+......+...++.+.+...+...... .|+ ...+..+...+...+++++|...+...
T Consensus 154 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 154 EKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99855 333 2344444444467788999999999988644 443 677888888899999999999988876
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 521 P-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 521 ~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
. ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5 2343 455666666666777899999999999988887
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.8 Score=36.49 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.50 E-value=6.1 Score=34.56 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC----hHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS----PDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~ 496 (648)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...|++..+.....+......- .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444555556666666666666665554333332 33445555555566666665555554322111 011 112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234567777766665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.7 Score=29.31 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.8 Score=35.75 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.++.+.++.+++.+.-+.|+.+..-..-+.++...|+|++|.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666666666666666666666666666555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.31 Score=39.01 Aligned_cols=28 Identities=57% Similarity=1.024 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCceEEEecCCCCCcChHHHHHHHH
Q 006364 596 GFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAE 629 (648)
Q Consensus 596 ~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 629 (648)
||||+++ |.|++||.+||+...+...+.
T Consensus 2 ~~~w~~~------h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV------HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce------EEEEeCCCcCccHHHHHHHHH
Confidence 7899864 899999999999876666553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.94 E-value=29 Score=36.68 Aligned_cols=124 Identities=10% Similarity=0.222 Sum_probs=57.0
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHH----HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 399 LDMYGKRGSIFESQRVFNETQEKSE---FAWTAIISAL----ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
|..+.+.|+.-+|.+++.+|.++.. +.|-.+-..| .-..+..+++.-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 4556677777777777776654211 1111111111 111223344444444444444333221 1223
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPGLSVLQSLL 533 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~ 533 (648)
|...++-++.+..-+ -....||..|..--...|..+.|++.--.+. .-|...+|..|.
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 334444444443321 1235566666666777888888877533332 124455555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.76 E-value=59 Score=39.99 Aligned_cols=308 Identities=12% Similarity=0.042 Sum_probs=169.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHhh-cCCCCcccHHHHHHHHHhcCCc
Q 006364 261 LIHAISIGNLVKEGRMIHGLCIKTNF--LSEPSVCNCLITMYARFESMQDSEKVFDE-LSCREIISWNALISGYAQNGLS 337 (648)
Q Consensus 261 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 337 (648)
+..+-.+.+.+.+|...++.-..... .-....+..+...|+..+++|....+... ...+ +...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 33455566777777777766311000 11122344555588888888887776653 2222 334456667788999
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNE 417 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 417 (648)
..|...|+.+.+..++...+++.++..-...+ .++...-..+-.....-+-....++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~--~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQ--HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhccc--chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998855666777777766655555 555444433322222111122233334444567777777777665
Q ss_pred cCCCChhHHHHH--HHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH----------
Q 006364 418 TQEKSEFAWTAI--ISALARHGD--YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS---------- 483 (648)
Q Consensus 418 ~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---------- 483 (648)
..+..+|.+. +..+.+..+ .-.-.+..+.+++.-+.| +.+|+..|.+..+.++.-.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655 223322222 112223444444321211 2233333332232222211
Q ss_pred hHHhcCCCCCh------HHHHHHHHHHhhcCCHHHHHHHH---hh------CC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 484 MLKDYHIEPSP------DHYSCMVDMLGRVGRLEEAEELV---GQ------IP---GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 484 m~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~---~~------~~---~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.....+..|+. ..|..- +.+.+....+.+-+ ++ |. ..--..+|......++..|.++.|
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~R---l~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNR---LERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHhhccCccccccccchhHHHH---HHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11112344431 112111 11222222222211 11 11 123456899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
..+.-.+.+.. -+..+.-.+..+...|+-..|..+++.-.+.
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99888877766 5578999999999999999999999876643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.39 E-value=13 Score=31.92 Aligned_cols=134 Identities=9% Similarity=0.062 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC--ChHHHHHHHhhcC
Q 006364 240 VSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE--SMQDSEKVFDELS 317 (648)
Q Consensus 240 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 317 (648)
++.++.+...|+.|+...+..+++.+.+.|.+..-. .++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 466777788899999999999999999999866544 4455666666665554443333221 1233455555543
Q ss_pred CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh
Q 006364 318 CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV 386 (648)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~ 386 (648)
..+..++..+...|++-+|+++.+....-..+ ....++.+..+.+ +...-..+++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~--D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSN--DDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 24667788899999999999998876441112 2244566666666 555555555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.20 E-value=10 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGP-GLSVLQSLLGACRI 538 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 538 (648)
..++.+++..+++.|. -+.|+ ...-..-+..+.+.|++++|.+++++....+ ....-..|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4678888888888875 45665 3333334556678888888888888877443 33333444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=4.2 Score=38.09 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=71.1
Q ss_pred hcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC---------CCchhhHHHhc-CChhhHHHHHHHHHHCCCCCChhh
Q 006364 188 MGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD---------RNVISWTTMIS-MNREDAVSLFKEMRLDGVCPNDVT 257 (648)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~ 257 (648)
.|.+....+...++..-....+++++...+-.+.. ...++|-.++. -++++++.++..=.+.|+-||.++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 34455566666667666667777777776655533 12334444333 678888888888888999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 006364 258 FIGLIHAISIGNLVKEGRMIHGLCIKTN 285 (648)
Q Consensus 258 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 285 (648)
++.+|+.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999888877776654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.3 Score=41.80 Aligned_cols=95 Identities=13% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
+-|.++|++++|+++|.+-.. +.| |.+++..-..||.+...+..|..-....+.- -...+.+|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR-- 171 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRR-- 171 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHH--
Confidence 345666666666666655444 334 5555555555555555554444333332210 01123333333
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 510 LEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 510 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+.+-...|+..+|.+=++..++++|.+-.
T Consensus 172 -----------------------~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 172 -----------------------MQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred -----------------------HHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 33334556777778888888888887543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.57 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.|+ ...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3665 777777777777777777775
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.5 Score=37.97 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----hcCCCCChHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK----DYHIEPSPDHYSCMV 501 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~l~ 501 (648)
+..++..+...|+++.+...++++... -+-|...|..++.+|...|+...|+..|+.+.+ ..|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 334444444445555555555554443 123444455555555555555555554444432 345556555544443
Q ss_pred HH
Q 006364 502 DM 503 (648)
Q Consensus 502 ~~ 503 (648)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.5 Score=39.54 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=74.7
Q ss_pred hCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-------CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC
Q 006364 86 FGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-------KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD 158 (648)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 158 (648)
.|.+....+...++..-....+++.+...+-...+ ++. +--+.++-+.+. ++++++.++..=.+.|+.||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccc
Confidence 35555666667777777767788888887766654 222 222334444333 67799999999999999999
Q ss_pred hhhHHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 006364 159 HVSFTSAASACGHEKNLELGKQIHGVSIKMG 189 (648)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (648)
.+|+..+|..+.+.+++..|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.32 E-value=15 Score=31.45 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 276 MIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
++...+.+.+++|+...+..+++.+.+.|+......+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444555667777777777777777777665554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.1 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.9 Score=39.26 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCce
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGL 608 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~ 608 (648)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~------------------- 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ------------------- 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-------------------
Confidence 4666778889999999999999999999999999999999999999999998877654432
Q ss_pred EEEecCCCCCcChHHHHHHHHHHHHHh
Q 006364 609 HGFSSGDNTHPRSEEIYRMAECLGSEM 635 (648)
Q Consensus 609 ~~f~~~~~~~~~~~~i~~~l~~l~~~~ 635 (648)
....|....|...++.|....
T Consensus 245 ------~P~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 245 ------CPEDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CCCchhHHHHHHHHHHHhhcC
Confidence 134566677777777766554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.94 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5688999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.59 E-value=15 Score=33.16 Aligned_cols=26 Identities=4% Similarity=-0.128 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
...+++.+|..+|++.....-+++-.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHH
Confidence 45677888888888877655554433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.57 E-value=23 Score=32.59 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=19.3
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
|.+.|.+..|..-++.|.+.+.-.+. ...+-.|..+|.+.|-.++|.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 34444444444444444443222222 233333444444444444433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.35 E-value=0.85 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.30 E-value=23 Score=32.26 Aligned_cols=135 Identities=9% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
.|.--..+|....++++|...+.+..+. ...|...|.. ...++.|.-+.+++.+ -|. +..|+--..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k----lsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK----LSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHH
Confidence 4555555666666666666666555431 2222222211 1223334444444421 122 3344444555
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 577 (648)
|...|..+-|-..+++.. -....-+.+.|.++|++...+-..+ ...|-..+++|.+..+++
T Consensus 101 Y~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 555665555444443321 0112233444555555544332111 123444555666666666
Q ss_pred HHHHHHH
Q 006364 578 MVAILRK 584 (648)
Q Consensus 578 ~a~~~~~ 584 (648)
+|...+.
T Consensus 168 Eaa~a~l 174 (308)
T KOG1585|consen 168 EAATAFL 174 (308)
T ss_pred HHHHHHH
Confidence 6655554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.91 E-value=24 Score=34.97 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEP----AGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
....+|..+...+++.|+++.|..++.++....+ ..+.....-++.+...|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999988652 2567788889999999999999999888776333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.71 E-value=50 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhH
Q 006364 195 SVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWT 229 (648)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 229 (648)
.+...+|+.+...|++++|-...-.|...+..-|.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe 427 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWE 427 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHH
Confidence 34556677777777777777777666665555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.67 E-value=21 Score=31.26 Aligned_cols=115 Identities=5% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFL--SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHY-----SCMVDMLGRVGRLEEA 513 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 513 (648)
+.....+++....-+-...++. .+...+...|++++|...++..... |....+ -.|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532122222222 3345678889999999998876532 323333 3345667788999999
Q ss_pred HHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 514 EELVGQIPGGPGLS-VLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 514 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+..++....+.-.. ....-+..+...|+-++|...|++.++.++.+
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999876432222 22334567889999999999999999887443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.36 E-value=11 Score=28.54 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+.-++.+-++.+....+.|++....+.|+||.+.+|+..|.++|+....+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4445666667777777899999999999999999999999999998865523 24556766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.30 E-value=8.3 Score=33.73 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHH
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKS------EFAWTAIISALARHGDYESVMNQFKEMENKGVR---PDSITFLS 463 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 463 (648)
..+..+.+.|.+.|+.+.|.+.|..+.+.. +..+-.+|......+++..+.....+....-.. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456789999999999999999999988653 335677888888899999999888887653222 22222222
Q ss_pred HHH--HhcccCcHHHHHHHHHHhHHh
Q 006364 464 VLT--VCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 464 ll~--a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+.. ++...|++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 235578999999888776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=32 Score=32.83 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHhhcCC
Q 006364 391 DPIVGSALLDMYGKRGS 407 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~ 407 (648)
+..+-...+.++++.|+
T Consensus 141 ~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 141 STNVRFAVAFALSVIND 157 (280)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 33333444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=13 Score=31.78 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=68.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHhhcC
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD-HYSCM--VDMLGRVG 508 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--~~~~~~~g 508 (648)
+++.++.++|+.-|.++.+-|...=++ ............|+...|...|+++-.+ .-.|.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 345666777777777777655432211 1111222345667777777777777554 3333321 11111 23455677
Q ss_pred CHHHHHHHHhhCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 509 RLEEAEELVGQIPGG--P-GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 509 ~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+++.....+.+... | ....-.+|.-+-.+.|++..|.+.|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777665522 2 233345566667777888888888877765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.71 E-value=56 Score=35.21 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=89.9
Q ss_pred hhcccChhhHhHHHHHHHHhCCCC---CcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDS---EVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEA 143 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a 143 (648)
+.+.+.+++|...-.... |..| ...++..+|+.+.-.|++++|-.+.-.|...+..-|---+..++..+ +..
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~-~l~-- 440 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELD-QLT-- 440 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccc-ccc--
Confidence 344455666655444322 3334 34678888999999999999999988888888888888888888777 332
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHh------------cCC-------CCcchHHHHHHHH
Q 006364 144 ILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKM------------GYG-------THVSVGNVLMSTY 204 (648)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~-------~~~~~~~~li~~~ 204 (648)
.++.-+.......+...|..+|-.+.. .+.. .+++..... ..+ -+......|...|
T Consensus 441 -~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 441 -DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred -hhhccCCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 222222222223444556666655544 1111 111111110 001 1223345588999
Q ss_pred HhCCChHHHHHHHhcCCCCCch
Q 006364 205 SKCEVTGDANKVFRRMHDRNVI 226 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~ 226 (648)
...+++++|..++-....+++.
T Consensus 516 l~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHccChHHHHHHHHhccChHHH
Confidence 9999999999998888765543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.67 E-value=6.1 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
+...-++.+....+.|++....+.|.||.+.+++..|.++|+....+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4455556666667889999999999999999999999999999876633 334477777653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.46 E-value=1.9 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=11.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 534 GACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.++...|+.+.|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.86 E-value=4.2 Score=27.01 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
.+.-++.+.|+++.|.+..+.+++++|++..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566789999999999999999999999865533
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.73 E-value=2 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999987654
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.40 E-value=8.2 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+-.-|++.+..+.+.+|++.+|+..|.++++-+.....+....|..+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 335689999999999999999999999999998876555544666553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.02 E-value=7.6 Score=29.38 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+-.-|++.+..+-+.+|++.+|+..|.++++-.......+...|..+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33568889999999999999999999999998875444344455544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.00 E-value=1.4 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988753
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=9.2 Score=38.15 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=44.0
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
+...|+++.+...+.... ......+...++......|+++.|....+.++..+-+++++...-+..-...|-++++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 344555555555554433 123334455555555556666666666666655554444444333333444455666666
Q ss_pred HHHHHhh
Q 006364 582 LRKGMKS 588 (648)
Q Consensus 582 ~~~~m~~ 588 (648)
.|+++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.2e+02 Score=37.45 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhc-CCCCCchhhHHHhc----CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCc
Q 006364 197 GNVLMSTYSKCEVTGDANKVFRR-MHDRNVISWTTMIS----MNREDAVSLFKEMRLDGVCPN-DVTFIGLIHAISIGNL 270 (648)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~----g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 270 (648)
|-.+...|+.-+++|...-+... ...++. ++-++. |++..|...|+.+.+. .|+ ..+++.++..-...+.
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH--HHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccc
Confidence 34445577777777776666552 333332 222222 8888888888888765 344 5677777776666666
Q ss_pred hHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHH
Q 006364 271 VKEGRMIHGLCIKTNFLSEPSV-CNCLITMYARFESMQDSEKVFDELSCREIISWNAL 327 (648)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 327 (648)
+....-..+...... .+.... ++.=+.+--+.+++|...+... .++..+|...
T Consensus 1499 l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 666555433332221 222222 2223344466777777776665 5666677665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.41 E-value=3.9 Score=36.15 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
.+.|+ +..||.|.--+...|+++.|.+.|+.
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 34444 44455554444555555555555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.12 E-value=73 Score=34.47 Aligned_cols=64 Identities=27% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChhHHHHHhccCC---CCCcchHHHHHHHHHcCCC------ChHHHHHHHHHHHHCCCCCChh
Q 006364 97 ALITMYSRWGRLVEARRVFDEMP---NKDSVSWNAILSGYTQDGD------YGVEAILALIEMMRKGLRLDHV 160 (648)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~------~~~~a~~~~~~m~~~g~~p~~~ 160 (648)
++|--+.|+|++++|.++..+.. ++....+-..+..|+...+ .-++...-|+...+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 35556779999999999983332 2344567777777776531 2234555566655544333543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.07 E-value=74 Score=34.49 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=108.9
Q ss_pred CCcchHHHHHHhhccCChHHHHHHHHHh-CCCCCC--hhhHHHHHHHhh-cccChhhHhHHHHHHHHhCCCCCcc-----
Q 006364 23 PDIVSWNTVLSGFEKSDDALSFALRMNL-IGVVFD--AVTYSTALSFCL-DHEGFLFGLQLHSLIVKFGLDSEVY----- 93 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~~a~~~~~~m~~-~g~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~----- 93 (648)
.++..|..||+ -|+..++...+ ..++|. ..++-.+...+. ...+++.|+..+++.+...-.++..
T Consensus 28 ~~l~~Y~kLI~------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 28 EQLKQYYKLIA------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred hhHHHHHHHHH------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 45566777777 56667777663 334443 334455555554 6778999999999776554333221
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC----CCcchH----HHH-HHHHHcCCCChHHHHHHHHHHHHCC---CCCChhh
Q 006364 94 VGNALITMYSRWGRLVEARRVFDEMPN----KDSVSW----NAI-LSGYTQDGDYGVEAILALIEMMRKG---LRLDHVS 161 (648)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~----~~l-i~~~~~~g~~~~~a~~~~~~m~~~g---~~p~~~t 161 (648)
....++..|.+.+... |.+.+++..+ .....| ..+ +.-+...+ ++..|++.++.+...- ..|-...
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 2334567777776666 7777766443 111222 222 22222346 8888999998875532 3444555
Q ss_pred HHHHHHHhc--CCCChhHHHHHHHHHHHhcC---------CCCcchHHHHHHHH--HhCCChHHHHHHHhcCC
Q 006364 162 FTSAASACG--HEKNLELGKQIHGVSIKMGY---------GTHVSVGNVLMSTY--SKCEVTGDANKVFRRMH 221 (648)
Q Consensus 162 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~ 221 (648)
+..++.+.. ..+..+.+.+....+..... .|...++..+++.+ ...|++..+...++.+.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666544 44445566666665543222 23445566666554 45677667766665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.07 E-value=3.5 Score=29.80 Aligned_cols=47 Identities=6% Similarity=0.054 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777666333334 45667777777777777776654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.03 E-value=13 Score=32.06 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
+++|..-+++++.++|+...++.+++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777888888999999999999999887653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.3 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888876643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.73 E-value=22 Score=31.20 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS-----ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
+-+..+|++++|..-|.+.++. ++|.. ..|..-..++.+.+.++.|+.-....+ .+.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHH
Confidence 3466677777777777777663 22222 223333344555666666655554443 33444 33333334445
Q ss_pred hhcCCHHHHHHHHhhC
Q 006364 505 GRVGRLEEAEELVGQI 520 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~ 520 (648)
.+...+++|+.-++++
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 5555555555444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.53 E-value=28 Score=36.18 Aligned_cols=147 Identities=20% Similarity=0.099 Sum_probs=97.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHH
Q 006364 404 KRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
-.|+++.|..++-.++++ .-+.++.-+-+.|-.++|++ +.+|.. -|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 346677776666555532 34455666667777777765 444442 23333 35688888887765
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 483 SMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 483 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
+. -+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 44 235668888999999999999988887754 266677777777887766666666665555443
Q ss_pred HHHHHHHHHhcCCcHHHHHHHH
Q 006364 563 YVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
-..+|...|+.++..+++.
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHH
Confidence 3346777888888888774
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.98 E-value=76 Score=33.86 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHhhCCCcc
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~ 593 (648)
.+.+.|...++++.+.++. .+...++..+.-. ++++.+.-.+..+.+.|.+-
T Consensus 378 r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred CCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 3566666666666666622 2222222222221 66666666555555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.45 E-value=1 Score=37.88 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHH
Q 006364 260 GLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLA 339 (648)
Q Consensus 260 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (648)
.+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777777788887776667788889999999999888888888874332 334556666777777777
Q ss_pred HHHHHHHhH
Q 006364 340 AVQAFFGVI 348 (648)
Q Consensus 340 A~~~~~~m~ 348 (648)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.39 E-value=2.9 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
..+...+...|+++.|...++..++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=81.15 E-value=13 Score=30.84 Aligned_cols=82 Identities=6% Similarity=0.144 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC---------CCcchHHHHHHHHHcCCCC-hHHHHHHHHHHHHCCCCCChhhHH
Q 006364 94 VGNALITMYSRWGRLVEARRVFDEMPN---------KDSVSWNAILSGYTQDGDY-GVEAILALIEMMRKGLRLDHVSFT 163 (648)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~-~~~a~~~~~~m~~~g~~p~~~t~~ 163 (648)
..|.++.-....+++....++++.+.. .+..+|++++.+.++.. . --.+..+|..|.+.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs-SaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS-SAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh-HHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345555555555666665555555532 46678999999997776 4 456778888888888899999999
Q ss_pred HHHHHhcCCCChh
Q 006364 164 SAASACGHEKNLE 176 (648)
Q Consensus 164 ~ll~~~~~~~~~~ 176 (648)
.++++|.+....+
T Consensus 120 ~li~~~l~g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHcCCCCc
Confidence 9999887654333
|
|
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.30 E-value=63 Score=31.79 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=129.0
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH--HHHHHCCCCCCHHHHHHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQF--KEMENKGVRPDSITFLSVL 465 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll 465 (648)
...+..+...+++.|...++++.--+... ...-++|+...|+.-. +-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34455566667777777777766544322 2234577777776532 2233333456666655555
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCC--C-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH-----------
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEP--S-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS----------- 531 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 531 (648)
..+. ...+. .|-. . ...-..|...+...|+..+|..++.+.+. .||++
T Consensus 114 ~tLr-------------~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 114 ETLR-------------TVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFIL 175 (439)
T ss_pred HHHH-------------HhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHH
Confidence 4431 11110 1111 1 23334567778889999999999888762 22322
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEc
Q 006364 532 -LLGACRIHGNVEMGERIADALMKMEPAG-------SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVG 603 (648)
Q Consensus 532 -l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 603 (648)
=+..|...+|+-.|.-+.++.....-++ ...|..+.......+.+-++.+.++..-+.|..+....-|+++-
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 2567888999999988888876543222 23688899999899999999999999888877777666688776
Q ss_pred CCCceEEEecCCCCCcChHHHHHHHH
Q 006364 604 DIDGLHGFSSGDNTHPRSEEIYRMAE 629 (648)
Q Consensus 604 ~~~~~~~f~~~~~~~~~~~~i~~~l~ 629 (648)
..+-.|+.-.+..+...++.....
T Consensus 256 --~~iv~f~~LAp~dneQsdll~~is 279 (439)
T KOG1498|consen 256 --RSIVSFCVLAPHDNEQSDLLARIS 279 (439)
T ss_pred --hhheeEEeecCCCcHHHHHHHHHh
Confidence 445556655454454444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.15 E-value=4.4 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+++.|...+...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888877765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 3e-07
Identities = 29/245 (11%), Positives = 67/245 (27%), Gaps = 14/245 (5%)
Query: 351 SKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410
P +L A +SL Q + L A +
Sbjct: 88 ESPWEEQLARLLQE--APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL 145
Query: 411 SQRVFNETQEKSE-------FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLS 463
+ + + + + A++ AR G ++ ++ +++ G+ PD +++ +
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 464 VLTVCGRNGMIHKG-RHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPG 522
L GR + M ++ +L R + + P
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQE----GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582
L + ++ +V + P + + L+ E V +
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSV 321
Query: 583 RKGMK 587
K
Sbjct: 322 EKPTL 326
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 3e-06
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 7/143 (4%)
Query: 37 KSDDALSFALRMNLIGVVFDAVTYSTALSFCL---DHEGFLFGLQLHSLIVKFGLDSEVY 93
D + + + + + CL L +H + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 94 VGNALITMYSRWGRLVEARRVFDEMPNK----DSVSWNAILSGYTQDGDYGVEAILALIE 149
+ NA++ ++R G E V + + D +S+ A L + L +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 150 MMRKGLRLDHVSFTSAASACGHE 172
M ++GL+L + S
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 6e-06
Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 11/129 (8%)
Query: 1 MNMYCKSGQFDKALCIFNNLNN-------PDIVSWNTVLSGFEKS---DDALSFALRMNL 50
+ Q A + + + +N V+ G+ + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 51 IGVVFDAVTYSTALSFCLDHEGFLFGLQ-LHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109
G+ D ++Y+ AL + ++ + + GL + L++ R L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 110 EARRVFDEM 118
+V
Sbjct: 254 AVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 12/172 (6%), Positives = 44/172 (25%), Gaps = 13/172 (7%)
Query: 161 SFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRM 220
+ +L++ + G + + A+ +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 221 HDR-------NVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAIS-I 267
H + + + ++ ++ V + ++ G+ P+ +++ + +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 268 GNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCR 319
+ + L++ R ++ KV S
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 52/379 (13%), Positives = 118/379 (31%), Gaps = 131/379 (34%)
Query: 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSDDALSFALRMNLI----GVVFD 56
+ KS ++ L + N+ N +A + + ++ L+ V D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAW-------------NAFNLSCKI-LLTTRFKQVTD 279
Query: 57 AVTYSTALSFCLDHEGFLFGL-QLHSLIVKF------GLDSEVYVGN----ALI-----T 100
++ +T LDH ++ SL++K+ L EV N ++I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 101 MYSRWGRL---------------------VEARRVFDEM---PNKD--------SVSWNA 128
+ W E R++FD + P S+ W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398
Query: 129 ILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKM 188
++ V ++ ++ + L K + I + +++
Sbjct: 399 VIK-------SDVMVVVN--KLHKYSL------------VEKQPKESTIS--IPSIYLEL 435
Query: 189 ------GYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTT---MISMNREDA 239
Y H ++ Y+ + T D++ + + ++ +
Sbjct: 436 KVKLENEYALH----RSIVDHYNIPK-TFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 240 VSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITM 299
++LF+ + L D F+ E ++ H T + + S+ N L +
Sbjct: 490 MTLFRMVFL------DFRFL-------------EQKIRH---DSTAWNASGSILNTLQQL 527
Query: 300 --YARFESMQDSEKVFDEL 316
Y + + D++ ++ L
Sbjct: 528 KFYKPY--ICDNDPKYERL 544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484
A LA H ++++ + ++ V + TFL + I+ D+
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA------ASIYFYDQNPDAA 120
Query: 485 LKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI----PGGPGLSVLQSLLGACRIHG 540
L+ H S + + V +L ++ RL+ A + + ++ + + +
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577
++ I + + + +G WE
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.16 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.94 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.39 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.03 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.94 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.48 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.78 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.08 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.95 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.08 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.58 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 86.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.26 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.75 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.18 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.05 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.87 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.82 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.32 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 82.03 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.88 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.57 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.43 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.37 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=356.94 Aligned_cols=496 Identities=7% Similarity=-0.063 Sum_probs=291.7
Q ss_pred ccCCChhHHHHHhhcCCCCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHH
Q 006364 5 CKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHS 81 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 81 (648)
.+.|.+..+...|+.++.+++..|+.++..|.+.+ +|+.+|++|.. ..|+..++..+..+|...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34566666777777777777778888888887777 77788887774 45677777778888888888888888877
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-C------------------CcchHHHHHHHHHcCCCChHH
Q 006364 82 LIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-K------------------DSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 82 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------------------~~~~~~~li~~~~~~g~~~~~ 142 (648)
.+... ++++.+++.++.+|.+.|++++|.++|+++.. . ++.+|+.++.+|.+.| ++++
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~ 218 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDR 218 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHH
Confidence 76543 56777788888888888888888888874332 2 3667777777777777 7777
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCChhHHH--HH-HHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHh
Q 006364 143 AILALIEMMRKGLRLD-HVSFTSAASACGHEKNLELGK--QI-HGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFR 218 (648)
Q Consensus 143 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (648)
|++.|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|+.++.+|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777776643 33 233333333333222211111 11 2222222223333344444445555555555544444
Q ss_pred cCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 219 RMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 219 ~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
.+.+ . .++..+++.++.++.+.|++++|..+++.+.+.+ +
T Consensus 297 ~~~~--------------------------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~----------- 336 (597)
T 2xpi_A 297 SING--------------------------L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-P----------- 336 (597)
T ss_dssp TSTT--------------------------G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred Hhhc--------------------------C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-c-----------
Confidence 4431 0 1233344444444444444444444444443332 1
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 299 MYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
.+..+|+.++.++.+.|++++|..+|+++....+.+..++..+...+.+.| ++++|..
T Consensus 337 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 394 (597)
T 2xpi_A 337 --------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN--KISEARR 394 (597)
T ss_dssp --------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc--cHHHHHH
Confidence 233445555555555555555555555554433334444444444444444 4555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 555444432 23455666677777777777777777766542 356677777777777777777777777777642 3
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDY---HIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSV 528 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 528 (648)
.+..+|+.+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. .+.+..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 356777777777777777777777777775432 45666 6677777777777777777777777654 3346777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
|..+..+|...|++++|.+.++++++++|+++..+..++++|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 7777777777888888888888888878877777777777764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=356.51 Aligned_cols=475 Identities=9% Similarity=-0.042 Sum_probs=389.8
Q ss_pred HHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHH
Q 006364 101 MYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180 (648)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (648)
.+.+.|....+...|+.++.+++..|+.++..|.+.| ++++|+.+|++|.. ..||..++..+..+|.+.|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3566788888999999999899999999999999999 99999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCC-------------------CchhhHHHhc-----CCh
Q 006364 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDR-------------------NVISWTTMIS-----MNR 236 (648)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~-----g~~ 236 (648)
+++.+.. .+++..+++.++.+|.++|++++|.++|+++... ++.+|+.+.. |++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 9998754 3678899999999999999999999999954433 3667777766 888
Q ss_pred hhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHH--HHH-HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 237 EDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEG--RMI-HGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
++|+++|++|...+ |+.. .+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 88888888887753 4433 333333333322222211 111 34444444445556677778889999999999999
Q ss_pred HhhcCC--CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 313 FDELSC--REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 313 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
|+++.. ++..+|+.++.+|.+.|++++|+++|+++....+.+..++..++.++.+.| +.++|..++..+.+.. +.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG--EKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhC-cc
Confidence 999987 788999999999999999999999999999844568889999999999999 9999999999999654 56
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+|..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 788999999999999999999999998753 468899999999999999999999999999863 4578999999999
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGPG--LSVLQSLLGACR 537 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~ 537 (648)
|.+.|++++|.++|+++.+. .| +..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999865 45 48899999999999999999999999873 3676 789999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|.+.++++.+.+|+++.+|..++.+|...|+|++|.+.++++.+.
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=252.78 Aligned_cols=215 Identities=11% Similarity=0.045 Sum_probs=180.0
Q ss_pred hHHHHHHHHHhCCCCCCh-hhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 40 DALSFALRMNLIGVVFDA-VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345566777777766554 357888999999999999999999999999999999999999999887765432
Q ss_pred CCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 119 PNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 119 ~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
.+.+ ..++|.++|++|...|+.||..||++||++|++.|+++.|.++++.|.+.|+.||..+||
T Consensus 81 ---------------~~~~-~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ---------------SPNP-GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ---------------SCCH-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ---------------hhcc-hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHH
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIH 278 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 278 (648)
+||.+|++.|++++|. ++|++|...|+.||..||+++|.+|++.|++++|.+++
T Consensus 145 ~lI~~~~~~g~~~~A~--------------------------~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 145 PALFGFCRKGDADKAY--------------------------EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHTTCHHHHH--------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH--------------------------HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999776555 45667889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 279 GLCIKTNFLSEPSVCNCLITMYARF 303 (648)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~ 303 (648)
++|.+.|..|+..||+.++..|...
T Consensus 199 ~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 199 QRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=244.98 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=173.5
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCch-------hhHHHHHHHHHHHHHhCCCCchh
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAED-------ISLKHGQRCHSHIIKVGLDSDPI 393 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~ 393 (648)
..++.+|.+|++.|++++|+++|++|.+ |++||..||+++|.+|++.+. ..++.|..+|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999 999999999999999987541 15789999999999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQ----EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG 469 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 469 (648)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 47999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
+.|++++|.++|++|.+. ++.|+..||+.++..|++.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999877 9999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-24 Score=219.28 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=235.2
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHHHHH
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC--R-EIISWNALISG 330 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 330 (648)
+..+|..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++.. | +...+..+...
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555555555566666666555555532 22334566666666667777777666666532 2 33455666666
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (648)
+...|++++|.+.|+++....+.+..++..+...+...| +.+.|...++.+.+.. +.+...+..+...+...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777776644455666777777777777 7777777777777654 2345677778888888889999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 411 SQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 411 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
|...|++..+ .+..+|..+...|...|++++|+..|+++.+. .| +..+|..+..++.+.|++++|.+.|+++.+
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9888886542 36778899999999999999999999999884 34 467888889999999999999999999976
Q ss_pred hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 487 DYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 487 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
. .|+ ..++..++..+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...+++++++.|.++..|
T Consensus 300 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 300 L---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred h---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 5 454 8889999999999999999999998876 345677899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 006364 564 VLMSNLYAEKGD 575 (648)
Q Consensus 564 ~~l~~~~~~~g~ 575 (648)
..++.++...|+
T Consensus 377 ~~lg~~~~~~~~ 388 (388)
T 1w3b_A 377 SNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTCC
T ss_pred HhHHHHHHHccC
Confidence 999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-23 Score=213.00 Aligned_cols=344 Identities=15% Similarity=0.165 Sum_probs=298.4
Q ss_pred CChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
|++++|.+.++.+... .|+.. .+..+...+...|+++.|...+....+.. +.+..++..+...|.+.|++++|...
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 5666666666666553 45544 45556667788999999999999888764 66788999999999999999999999
Q ss_pred HhhcC--CC-CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 313 FDELS--CR-EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 313 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
|+++. .| +..+|..+..++.+.|++++|++.|+++....+.+...+..+...+...| +.++|...+..+.+.. +
T Consensus 90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhC-C
Confidence 99875 23 45679999999999999999999999998844455667777888888899 9999999999999874 3
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVL 465 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 465 (648)
.+...+..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHH
Confidence 4578899999999999999999999998763 35678999999999999999999999999874 454 68889999
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 542 (648)
.++...|++++|++.|+.+.+. .|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+...+...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999754 676 8899999999999999999999999876 566888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++|...++++++..|+++.++..++.+|...|++++|.+.++++.+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=206.08 Aligned_cols=425 Identities=9% Similarity=-0.023 Sum_probs=288.4
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTY 204 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (648)
.|...-..+.+.| ++++|+..|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK-KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3445556667777 7777777777777654 677777777777777777777777777777654 33456677777777
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
.+.|++++|...|+.+...+. ++......++..+........+.+.+..+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD---------------------------FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS---------------------------CCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHhhHHHHHHHHHHHHhcCC---------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766655432111 11111112222111111111111111111110
Q ss_pred cCCCCchhHHHH---HHHHHhcCChHHHHHHHhhcC---------CC-CcccHHHHHHHHHh---cCCcHHHHHHHHHhH
Q 006364 285 NFLSEPSVCNCL---ITMYARFESMQDSEKVFDELS---------CR-EIISWNALISGYAQ---NGLSLAAVQAFFGVI 348 (648)
Q Consensus 285 ~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 348 (648)
+..|+......- ............+...+.... .+ +...+......+.. .|++++|+..|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 000000000000 000000001111111111111 11 12334444444444 788999999888877
Q ss_pred h-----C--C-------CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHH
Q 006364 349 K-----E--S-------KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV 414 (648)
Q Consensus 349 ~-----~--~-------~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 414 (648)
. . . +.+..++..+...+...| +++.|...+..+.+.... ...+..+...|...|++++|...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 6 1 1 223556777778888888 999999999998887655 88888899999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCC
Q 006364 415 FNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIE 491 (648)
Q Consensus 415 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 491 (648)
|+...+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 368 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---F 368 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---S
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---c
Confidence 987654 367789999999999999999999999998853 335678888999999999999999999999865 4
Q ss_pred CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCC
Q 006364 492 PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG----LSVLQSLLGACRI---HGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 492 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~ 559 (648)
|+ ...+..+...+.+.|++++|...++++. ..++ ..+|..+...+.. .|+++.|...++++.+..|.+
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 54 7889999999999999999999998764 2222 3488999999999 999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.++..++.+|...|++++|.+.+++..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998775
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=202.85 Aligned_cols=307 Identities=10% Similarity=0.041 Sum_probs=256.6
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHH
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISG 330 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 330 (648)
+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45567778888888899999999998888763 45677888888899999999999998888753 356788888889
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCH---HHHHHHH------------HHhccCchhhHHHHHHHHHHHHHhCCCCchhHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNA---YTFGSVL------------NAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVG 395 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~---~~~~~ll------------~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 395 (648)
|.+.|++++|...|+++....+.+. ..+..+. ..+...| +++.|...+..+.+.. +.+...+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--DYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999998887444444 5555443 3367777 8999999999998764 4577889
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHH-------
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSV------- 464 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l------- 464 (648)
..+..+|.+.|++++|.++|+.+.+ .+..+|..++..|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 4788999999999999999999999999987 45554 334333
Q ss_pred -----HHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 465 -----LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 465 -----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|...++++. .+.+..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999865 555 4588999999999999999999999865 44578999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
+.+|...|++++|...+++++++.|+++..+..++.+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999944
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-21 Score=200.94 Aligned_cols=452 Identities=9% Similarity=-0.034 Sum_probs=268.2
Q ss_pred hhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHH
Q 006364 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYT 134 (648)
Q Consensus 58 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 134 (648)
..+...-..+...|++++|...|+.+.+.. |++..+..+..+|.+.|++++|...|+++.+ .+...|..+...+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345556666777778888888888777765 5677777777777777777777777776543 24456777777777
Q ss_pred cCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 006364 135 QDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDAN 214 (648)
Q Consensus 135 ~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (648)
+.| ++++|+..|+.+...+. ++......++..+........+.+.+..+...+..|+......-.
T Consensus 85 ~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------- 149 (514)
T 2gw1_A 85 GLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------------- 149 (514)
T ss_dssp HTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh-------------
Confidence 777 77777777777766542 233333333332222111111111111111111111110000000
Q ss_pred HHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCC---------hhhHHHHHHHHh---cCCchHHHHHHHHHHH
Q 006364 215 KVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPN---------DVTFIGLIHAIS---IGNLVKEGRMIHGLCI 282 (648)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~---------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~ 282 (648)
.+.... ........+...+......++ ...+......+. +.|+++.|...++.+.
T Consensus 150 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 150 ------------ERKDKQ-ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred ------------HHHhhc-cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 000000 000111111111111111111 111222222222 2455555555555554
Q ss_pred H-----hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHH
Q 006364 283 K-----TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYT 357 (648)
Q Consensus 283 ~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~ 357 (648)
+ ..-.|+..... ..+...|..+...+...|++++|+..|+++....+. ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~ 272 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLK-----------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNS 272 (514)
T ss_dssp HHHHHHTTTSTTCHHHH-----------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHH
T ss_pred HHhhhhhccCccccccC-----------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHH
Confidence 4 11111110000 001234555566666666666666666666651111 556
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALA 434 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 434 (648)
+..+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+...+ .+..+|..+...+.
T Consensus 273 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 273 YIYMALIMADRN--DSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHTSS--CCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 666666666666 6666666666666543 23456677777888888888888888876542 35678888888888
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhh---c
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGR---V 507 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~---~ 507 (648)
..|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+...-.|+ ...+..+...+.+ .
T Consensus 350 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999988874 2334677888888889999999999999888755222232 3488888999999 9
Q ss_pred CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 508 GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 508 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
|++++|...++++. .+.+..+|..+...+...|+++.|...+++++++.|.++..+..+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999988765 3456778889999999999999999999999999999888776663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-20 Score=193.14 Aligned_cols=421 Identities=10% Similarity=0.038 Sum_probs=251.2
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMST 203 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 203 (648)
..|..+-..+.+.| ++++|+..|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 26 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAK-NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTT-CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555556666 6666666666665533 1244555556666666666666666666666553 3345566666777
Q ss_pred HHhCCChHHHHHHHhcCCC-CCchh--hHHHhc-CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 006364 204 YSKCEVTGDANKVFRRMHD-RNVIS--WTTMIS-MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHG 279 (648)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 279 (648)
|...|++++|...|+.+.. |+... ...++. +...+|...++.+.... |
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~-------------------------- 154 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--E-------------------------- 154 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--c--------------------------
Confidence 7777777777776653321 11000 000000 22233444444332210 0
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHh--------cCCcHHHHHHHHHhH
Q 006364 280 LCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREII---SWNALISGYAQ--------NGLSLAAVQAFFGVI 348 (648)
Q Consensus 280 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~ 348 (648)
+..+........+..+....+.+.+...+......+.. .+..+...+.. .|++++|+..|+++.
T Consensus 155 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 155 -----GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp ---------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00001111122333444555555555555554433332 22222222211 235677777777766
Q ss_pred hCCCCCHH-------HHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-
Q 006364 349 KESKPNAY-------TFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE- 420 (648)
Q Consensus 349 ~~~~p~~~-------~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 420 (648)
...+.+.. ++..+...+...+ +++.|...+..+.+.. |+...+..+...|...|++++|.+.|+...+
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKN--NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 63333322 3444445555666 7777777777777654 3366777777778888888888888776542
Q ss_pred --CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHH
Q 006364 421 --KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHY 497 (648)
Q Consensus 421 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 497 (648)
.+..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 381 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVP 381 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHH
Confidence 356678888888888888888888888877742 223567777777888888888888888887755 454 6677
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC----CC----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCC
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIP----GG----PGLSVLQSLLGACRIH----------GNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~----~~----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 559 (648)
..+...+.+.|++++|...++++. .. .....+..+...+... |++++|...++++.+..|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 778888888888888888877653 11 1122234445566666 88888888888888888888
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..+..++.+|...|++++|.+.+++..+
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888888888888888888888877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=186.64 Aligned_cols=296 Identities=12% Similarity=0.059 Sum_probs=255.3
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHH
Q 006364 287 LSEPSVCNCLITMYARFESMQDSEKVFDELS---CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLN 363 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~ 363 (648)
+.+...+..+...|.+.|++++|..+|+.+. ..+..+|..+..+|...|++++|+..|+++.+..+.+..++..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4456678889999999999999999999875 3467889999999999999999999999999855667889999999
Q ss_pred HhccCchhhHHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHhhcCCHHHHHHHHhhcCC---CChhH
Q 006364 364 AVGAAEDISLKHGQRCHSHIIKVGLDSDP---IVGSAL------------LDMYGKRGSIFESQRVFNETQE---KSEFA 425 (648)
Q Consensus 364 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~ 425 (648)
++...| ++++|...+..+.+... .+. ..+..+ ...|.+.|++++|...|+.+.+ .+..+
T Consensus 103 ~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQG--KLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHTT--CHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999 99999999999987542 233 455545 4458999999999999998753 47789
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH----
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM---- 500 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l---- 500 (648)
|..++.+|.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|+..|+.+.+. .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHH
Confidence 999999999999999999999999875 2456789999999999999999999999999754 666 5555555
Q ss_pred --------HHHHhhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 501 --------VDMLGRVGRLEEAEELVGQIP-GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 501 --------~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+..+.+.|++++|...++++. ..|+ ...|..+...+...|++++|...++++++..|+++.+|..+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 889999999999999998875 2343 44788889999999999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhC
Q 006364 567 SNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+.+|...|++++|.+.++++.+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-18 Score=182.98 Aligned_cols=441 Identities=10% Similarity=0.024 Sum_probs=283.3
Q ss_pred hhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHH
Q 006364 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGY 133 (648)
Q Consensus 57 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 133 (648)
...+..+...+.+.|++++|...++.+++.. +.++..+..+..+|.+.|++++|.+.|++..+ .+...|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3455666667777788888888888887765 34567777777777778888888887776643 3456677777777
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChH
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMG--YGTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~ 211 (648)
...| ++++|+..|+.+. ..|+... ..+..+...+....+...+..+.+.. ..+........+..+....+.+
T Consensus 104 ~~~g-~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLG-NFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHT-CHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcC-CHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 7777 7777877775332 1222211 11222233333445555555554321 1111112233344444555555
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCchHHHHHHHHHHHHhcCCCCc
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIH-AISIGNLVKEGRMIHGLCIKTNFLSEP 290 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (648)
.+...+......+.. ...+...+. .+...+
T Consensus 178 ~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~--------------------- 208 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTA----------------------------YALLSDALQRLYSATD--------------------- 208 (537)
T ss_dssp HHHHTSCCCCSSCSS----------------------------HHHHHHHHHHHHTCSH---------------------
T ss_pred HHHHHHhhccccccH----------------------------HHHHHHHHHHHHHhhh---------------------
Confidence 554444443322111 111111111 111000
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhcCCCCc----------ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 291 SVCNCLITMYARFESMQDSEKVFDELSCREI----------ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 291 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
-......|++++|..+|+.+.+.++ .+|..+...+...|++++|+..|++.... .|+..++..
T Consensus 209 ------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 281 (537)
T 3fp2_A 209 ------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIF 281 (537)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCchHHHH
Confidence 0000112344444444444432211 13455556677788888888888887772 233777777
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCC
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHG 437 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 437 (648)
+...+...| +++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+...+ .+...|..+...+...|
T Consensus 282 l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 282 LALTLADKE--NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHTCCSS--CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 888888888 8888888888888765 34677788899999999999999999987653 35778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc------
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP----SPDHYSCMVDMLGRV------ 507 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~------ 507 (648)
++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...+.+.
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999998852 34467888889999999999999999999875421112 133355566778888
Q ss_pred ----CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 508 ----GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 508 ----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
|++++|...+++.. .+.+..+|..+...+...|++++|...++++.++.|.++....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999998865 4456788999999999999999999999999999998876644
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-17 Score=164.10 Aligned_cols=304 Identities=9% Similarity=0.006 Sum_probs=227.0
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHH
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGY 331 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 331 (648)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|++... .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456677778888999999999998888764 45677788888888899999999988887642 3557788888888
Q ss_pred HhcCCcHHHHHHHHHhHhCCC---CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCH
Q 006364 332 AQNGLSLAAVQAFFGVIKESK---PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI 408 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (648)
...|++++|+..|++.....+ .+...+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA---------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHccCH
Confidence 888999999998888876322 222222222110 00 11123345677788888
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 409 FESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 409 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
++|.+.|+.+.+ .+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887653 36677888888888889999999988888875 23456778888888888899999999888887
Q ss_pred HhcCCCCC-hHHHH------------HHHHHHhhcCCHHHHHHHHhhCC-CCC-CH----HHHHHHHHHHHHcCCHHHHH
Q 006364 486 KDYHIEPS-PDHYS------------CMVDMLGRVGRLEEAEELVGQIP-GGP-GL----SVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 486 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~----~~~~~l~~~~~~~g~~~~a~ 546 (648)
+. .|+ ...+. .+...+.+.|++++|...++++. ..| +. ..+..+...+...|+++.|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 55 454 33332 23667888999999999888754 223 23 23455777888899999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 547 RIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..++++.+..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-17 Score=165.01 Aligned_cols=308 Identities=12% Similarity=0.039 Sum_probs=229.1
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++++|+..|++..... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...|
T Consensus 17 g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999998753 2356788888889999999999999999999874 446688999999999999999999999
Q ss_pred hhcCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC
Q 006364 314 DELSCREI------ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG 387 (648)
Q Consensus 314 ~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~ 387 (648)
+.....++ ..+..+...+. ...+..+...+...| +.+.|...+..+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGA--DYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhC
Confidence 98865433 23333311000 001111222333334 4445555554444433
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHH-
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFL- 462 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~- 462 (648)
+.+...+..+...|...|++++|...++...+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 23455666677777778888888888876653 35677888888888888999999988888874 343 23222
Q ss_pred -----------HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h----HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC
Q 006364 463 -----------SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P----DHYSCMVDMLGRVGRLEEAEELVGQIP--GGP 524 (648)
Q Consensus 463 -----------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 524 (648)
.+...+...|++++|...++.+.+. .|+ . ..+..+...+.+.|++++|...+++.. .+.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 2355688899999999999999866 344 2 345668899999999999999998865 345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999998888887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-15 Score=161.06 Aligned_cols=535 Identities=13% Similarity=0.112 Sum_probs=319.8
Q ss_pred cccCCChhHHHHHhhcCCC-------CCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhH-------------H
Q 006364 4 YCKSGQFDKALCIFNNLNN-------PDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTY-------------S 61 (648)
Q Consensus 4 ~~~~g~~~~A~~~f~~~~~-------p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~-------------~ 61 (648)
|-+.|-++.|++.+..+.. .....=.-++.-+++.. .++++++.|...+++-|.... .
T Consensus 617 CE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~ 696 (1630)
T 1xi4_A 617 CEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQ 696 (1630)
T ss_pred HHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHH
Confidence 4467888889988886541 12222334566666666 899999999976554332222 2
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---------------CCc---
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---------------KDS--- 123 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~--- 123 (648)
.++..+-+.+.++...-.+..++ ....|+.+....|.+.++.|++.+..++..+-.- +|.
T Consensus 697 ~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pl 774 (1630)
T 1xi4_A 697 SLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 774 (1630)
T ss_pred HHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCc
Confidence 22233323232332222222222 2456889999999999999999998888776431 111
Q ss_pred -------------c------hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHhcCCC
Q 006364 124 -------------V------SWNAILSGYTQDGDYGVEAILALIEMMRKGLRL-----------DHVSFTSAASACGHEK 173 (648)
Q Consensus 124 -------------~------~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~ 173 (648)
+ .....|..|++.- ++..+-.+.-.++..+... +......|+..+-+.+
T Consensus 775 i~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~v-np~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrn 853 (1630)
T 1xi4_A 775 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKV-NPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRN 853 (1630)
T ss_pred eeeccccccHHHHHHHHHhcCchhHHHHHHhcc-CCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1 1123455555544 3333333333333222111 1111233333344444
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH-------------------------HHHHhcC--------
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDA-------------------------NKVFRRM-------- 220 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-------------------------~~~~~~~-------- 220 (648)
++..-...++.-+..| ..++.++|+|...|...++-.+. .-.+++-
T Consensus 854 rLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 854 RLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 4444555555555555 45677788887777654422211 1111100
Q ss_pred ----------------CCCCchhhHHHhc-------------------------------------CChhhHHHHHHHHH
Q 006364 221 ----------------HDRNVISWTTMIS-------------------------------------MNREDAVSLFKEMR 247 (648)
Q Consensus 221 ----------------~~~~~~~~~~li~-------------------------------------g~~~~a~~~~~~m~ 247 (648)
.+.|...|+.++. |.+.+|++++++..
T Consensus 933 vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0134555555543 67777888887777
Q ss_pred HCCC--CCChhhHHHHHHH---------------------------HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 248 LDGV--CPNDVTFIGLIHA---------------------------ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 248 ~~g~--~p~~~~~~~ll~~---------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
..+- .-+...-+.++.+ |...|.+++|..+|++... +..-+.
T Consensus 1013 l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~ 1083 (1630)
T 1xi4_A 1013 LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV---------NTSAVQ 1083 (1630)
T ss_pred cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHH
Confidence 4321 0111222223322 2334444455544444210 011111
Q ss_pred H-HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH
Q 006364 299 M-YARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ 377 (648)
Q Consensus 299 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~ 377 (648)
. +-..|++++|.++.++. .+..+|..+..++...|++++|++.|.+. -|...|..+..+|.+.| +++++.
T Consensus 1084 VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG--kyEEAI 1154 (1630)
T 1xi4_A 1084 VLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG--NWEELV 1154 (1630)
T ss_pred HHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC--CHHHHH
Confidence 1 22455555555555544 23567777888888888888888888554 56667777888888888 888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 457 (648)
+.+....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 8887766654 34444445788888888877544442 3456666777778888888888888888774
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACR 537 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 537 (648)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|......+. .++..+..++..|.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQ 1291 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHH
Confidence 36777888888888888888887765 234677777777777888888877766533 34455668888889
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CCcHHHHHHH
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK--GDWEMVAILR 583 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 583 (648)
..|.+++|..+++..+.++|.+...|..|+.+|++. ++..++.+++
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999988888888888888775 3444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-17 Score=158.86 Aligned_cols=284 Identities=10% Similarity=-0.015 Sum_probs=160.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+..++++....+.+...+..+...+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 33333444444444444444444444321 122333334444444444444444444444322222333333333333
Q ss_pred cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 006364 367 AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 443 (648)
..|+ +.+.|...+..+.+.. +.+...+..+...|...|++++|.+.|+...+ .+...|..+...|...|++++|+
T Consensus 102 ~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGH-KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCS-CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhhh-hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 3221 2333333333333322 12334455566666666666666666665442 23455666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHH
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH-------IEPSPDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
..|++..+. .+.+...+..+...+...|++++|...++.+.+... .......+..+..++.+.|++++|...
T Consensus 180 ~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777777664 233456666777777777777777777777764311 022256777777778888888888877
Q ss_pred HhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCc
Q 006364 517 VGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY-AEKGDW 576 (648)
Q Consensus 517 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 576 (648)
+++.. .+.+..+|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77654 3345667777778888888888888888888888888888888888877 455554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-17 Score=158.18 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=228.5
Q ss_pred CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006364 319 REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSAL 398 (648)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (648)
.++..+..+...+...|++++|+++|+++....+.+...+..+...+...| +.+++...+..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN--KANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh--hHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 466778888899999999999999999998855556667777778888888 9999999999999865 3467788899
Q ss_pred HHHHhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcH
Q 006364 399 LDMYGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMI 474 (648)
Q Consensus 399 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 474 (648)
...|...| ++++|.+.|+...+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 357789999999999999999999999998852 33457777788999999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----------CCCHHHHHHHHHHHHHcCCH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-----------GPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~ 542 (648)
++|...++.+.+ ..|+ ...+..+...+.+.|++++|...+++... +....+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999974 4665 88999999999999999999999877541 34467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++|...++++.+..|.++..+..++.+|...|++++|.+.+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-14 Score=155.39 Aligned_cols=378 Identities=12% Similarity=0.101 Sum_probs=287.6
Q ss_pred hHHHHHHHhcCCCChhHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhh-HHHhc-CCh
Q 006364 161 SFTSAASACGHEKNLELGKQIHGVSIKMG--YGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISW-TTMIS-MNR 236 (648)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~-g~~ 236 (648)
-....+++|...|.+.++.++++..+-.+ +.-+....+.|+.+..+. +..+...+.+....-+..-. ..++. |.+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 33557788889999999999999988432 123445667777777776 55666666666554332221 22222 999
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhc
Q 006364 237 EDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDEL 316 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 316 (648)
++|..+|++.. -.....+.++ -..+++++|.++.+.+ .++.+|..+..++...|++++|...|.+.
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999852 1111122232 2678899999888754 45788999999999999999999999764
Q ss_pred CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHH
Q 006364 317 SCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGS 396 (648)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (648)
.|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.+ .++....+. + .++...+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~--rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTN--RLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhc--CHHHHHHHH----h---CCCHHHHH
Confidence 677889999999999999999999999877722 33333345888899988 777544432 1 34556677
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 476 (648)
.+.+.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. -+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8999999999999999999996 48999999999999999999999977 456899999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH--GNVEMGERIADAL 552 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 552 (648)
|..+... +.-+...+..++..|.+.|.+++|..+++... .+.....|.-|...+.+. +++.++.+.|..-
T Consensus 1269 A~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9987653 34456777899999999999999999998765 223444666666666554 5777777777776
Q ss_pred HhcCC-----CCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 553 MKMEP-----AGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 553 ~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
..+.| .++..|.-+..+|.+.|+|+.|...
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66655 6778899999999999999999853
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=163.22 Aligned_cols=279 Identities=11% Similarity=-0.003 Sum_probs=220.2
Q ss_pred HHhcCChHHHHH-HHhhcCC---C----CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchh
Q 006364 300 YARFESMQDSEK-VFDELSC---R----EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDI 371 (648)
Q Consensus 300 ~~~~g~~~~a~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~ 371 (648)
+.-.|++++|.. .|++... . +...|..+...+...|++++|+..|+++....+.+..++..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-- 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-- 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc--
Confidence 334577777877 7765432 1 34567888888888899999999998888866667788888888888888
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHH---------------HHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTA---------------IISAL 433 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~ 433 (648)
+.+.|...+..+.+.. +.+...+..+...|...|++++|.+.|+.+.+. +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 8889998888888775 346778888889999999999999998876532 2222221 13334
Q ss_pred HhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVR-PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 511 (648)
...|++++|+..|+++.+.... ++..++..+...+...|++++|+..|+.+.+. .|+ ...+..+...+.+.|+++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 4889999999999999884322 14788899999999999999999999999765 565 889999999999999999
Q ss_pred HHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCcHH
Q 006364 512 EAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG-----------SGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 512 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 578 (648)
+|...++++. .+.+..+|..+...+...|+++.|...+++++++.|.+ +.+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999865 44568899999999999999999999999999998887 7899999999999999999
Q ss_pred HHHHHH
Q 006364 579 VAILRK 584 (648)
Q Consensus 579 a~~~~~ 584 (648)
|..+++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-17 Score=158.97 Aligned_cols=341 Identities=12% Similarity=0.084 Sum_probs=108.4
Q ss_pred hCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHH
Q 006364 104 RWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHG 183 (648)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (648)
+.|++++|.++++++..|+ .|+.+..++.+.| ++++|++.|.+ .+|..+|..+++++...|++++|...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g-~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKG-MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcC-CHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999986664 8999999999999 99999999965 2577789999999999999999999888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhH
Q 006364 184 VSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTF 258 (648)
Q Consensus 184 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~ 258 (648)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+-. |.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45578888999999999999998877752 33334443333 4444444444433 244
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcH
Q 006364 259 IGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSL 338 (648)
Q Consensus 259 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (648)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 44555555555555554444443 234444555555555555555544433332 22222333444455555555
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
+|+.+++.....-+.....|+-+--++++-. -+++.+..+.|..-
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~-----------------------------------p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFK-----------------------------------PQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-----------------------------------HHHHHHHHHHHHHH
Confidence 5555554444311333333333333333332 23334444444321
Q ss_pred CC--------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 419 QE--------KSEFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 419 ~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
.. .+...|..+...|...++++.|.. .|.+. ...-+...|.-++.--....-+-+|+.++-.-
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----- 341 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----- 341 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-----
Confidence 11 144567777777777777777765 33332 12233444544444444444444444444311
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 490 IEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
.|.. .+-|..++...=+...+.+++++.
T Consensus 342 -~p~~--l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 342 -KPLL--LNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -CGGG--HHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -CHHH--HHHHHHHHHhccCcHHHHHHHHHc
Confidence 2322 334444444444444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=159.59 Aligned_cols=260 Identities=10% Similarity=-0.013 Sum_probs=212.0
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALL 399 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (648)
+...|..+...+.+.|++++|+..|+++....+.+..++..+...+...| +.+.|...+..+.+.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568888888889999999999999888855667888888888888888 8999999998888765 34577888899
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 006364 400 DMYGKRGSIFESQRVFNETQEKS-------------EFAWTAIISALARHGDYESVMNQFKEMENKGVR-PDSITFLSVL 465 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 465 (648)
..|.+.|++++|...|+.+.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999998776421 223445688999999999999999999985322 2578899999
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 542 (648)
..+...|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|...++++. .+.+..+|..+..++...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999865 565 8899999999999999999999999865 345688999999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 543 EMGERIADALMKMEPA------------GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
++|...+++++++.|. +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 367899999999999999998887753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=155.09 Aligned_cols=342 Identities=11% Similarity=0.047 Sum_probs=162.0
Q ss_pred hCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 006364 206 KCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGL 280 (648)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 280 (648)
+.|++++|.++++++..|+ .|..+.. |++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344455555555543332 4443333 455555555533 25777888888888888999999887777
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 281 CIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7663 45577888899999999999988888763 66678999999999999999999999876 36888
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChH
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYE 440 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (648)
+..++.+.| ++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 154 LA~~L~~Lg--~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 154 LASTLVHLG--EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHTTT--CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhc--cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 888888888 888888888776 377888888888888888888877776654 34444456888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHhcccCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSV--LTVCGRNGMIHKGRHLFDSMLKDYHIEP------SPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~~ 512 (648)
+|+.+++...... +--...|+.+ +-+--+.+++.+.++.|.. +.+++| +...|.-++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999998877532 2223444444 4444455566666666553 336666 37778899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
|...+-.-+ |+..--..+.....+-.|.+.--++....++..| .....|..++...=+...+.+++++.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 887665543 2222223445556667777766666666665544 33455555555555555555555433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-15 Score=143.55 Aligned_cols=267 Identities=10% Similarity=0.028 Sum_probs=209.2
Q ss_pred HHHhcCChHHHHHHHhhcCCCCc----ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHH
Q 006364 299 MYARFESMQDSEKVFDELSCREI----ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLK 374 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~ 374 (648)
-....|+++.|+..++.....++ .....+..+|...|++++|+..++. ..+|+..++..+...+...+ +.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~--~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS--RRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST--THH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC--cHH
Confidence 34567888888888877665443 2345567788888888888876644 34566777788888888888 888
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 375 HGQRCHSHIIKVGLDS-DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
.+...++.+...+..| ++..+..+...|...|++++|.+.++. ..+...+..++..|.+.|++++|...|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 8998888888776544 566677788999999999999999998 457889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH
Q 006364 454 VRPDSITF---LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLS 527 (648)
Q Consensus 454 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 527 (648)
.|+.... ...+..+...|++++|..+|+++.+. .| +...++.+..++.+.|++++|...+++.. .+.++.
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4664321 12233344569999999999999876 45 48899999999999999999999999865 445788
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 528 VLQSLLGACRIHGNVEM-GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
+|..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 89999999999999865 6789999999999998654 34555556665544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-14 Score=150.20 Aligned_cols=403 Identities=9% Similarity=0.054 Sum_probs=270.0
Q ss_pred ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC--CCchhhHHHhc--
Q 006364 158 DHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD--RNVISWTTMIS-- 233 (648)
Q Consensus 158 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~-- 233 (648)
|...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56678888874 6789999999999999875 355677889999999999999999999998766 55555655442
Q ss_pred ----CChhhHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCchHHHHHHHHHHHHhcCCCCc---h
Q 006364 234 ----MNREDAVS----LFKEMRL-DGVCPN-DVTFIGLIHAISI---------GNLVKEGRMIHGLCIKTNFLSEP---S 291 (648)
Q Consensus 234 ----g~~~~a~~----~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~---~ 291 (648)
|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.|..+|+..++. |.. .
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~ 166 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQ 166 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHH
Confidence 66666554 5554433 244443 3344444444332 45666666666666652 221 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhH------hC----CCCCH------
Q 006364 292 VCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVI------KE----SKPNA------ 355 (648)
Q Consensus 292 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~----~~p~~------ 355 (648)
+|..........|. ..+..++. ...+++..|..++.... .. ++|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111100110 00111110 02334556666555421 11 24431
Q ss_pred --HHHHHHHHHhcc----Cchh--hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-------cCCHH-------HHHH
Q 006364 356 --YTFGSVLNAVGA----AEDI--SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK-------RGSIF-------ESQR 413 (648)
Q Consensus 356 --~~~~~ll~a~~~----~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~ 413 (648)
..|...+.-... .++. ..+.+..+++...... +.++..|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 233333322211 1100 1235667787777653 4567788888888775 68987 8999
Q ss_pred HHhhcCC---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 414 VFNETQE---K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 414 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+|+...+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9997764 3 578899999999999999999999999998 45653 47888888888899999999999999754
Q ss_pred cCCCCC-hHHHHHHHHH-HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--
Q 006364 488 YHIEPS-PDHYSCMVDM-LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-- 561 (648)
Q Consensus 488 ~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-- 561 (648)
.|. ...|...+.. +...|+.++|..+|++.. .+.++..|..++..+...|+.+.|..+++++++..|.++.
T Consensus 386 ---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 386 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp ---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred ---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 444 3444333322 346899999999998765 3346889999999999999999999999999998876665
Q ss_pred --hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 --SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.|...+......|+.+.+..+.+++.+.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7778888888899999999999888653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-15 Score=156.05 Aligned_cols=400 Identities=11% Similarity=0.058 Sum_probs=276.1
Q ss_pred CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHH
Q 006364 122 DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLM 201 (648)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 201 (648)
|...|..++. +.+.| +.++|..+|+++.+.- +-+...|...+..+.+.|+++.|..+|+.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQ-PIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6778999998 57889 9999999999998742 2345578888999999999999999999998764 5777777777
Q ss_pred HH-HHhCCChHHHHH----HHhcCC------CCCchhhHHHh--------------cCChhhHHHHHHHHHHCCCCCCh-
Q 006364 202 ST-YSKCEVTGDANK----VFRRMH------DRNVISWTTMI--------------SMNREDAVSLFKEMRLDGVCPND- 255 (648)
Q Consensus 202 ~~-~~~~g~~~~A~~----~~~~~~------~~~~~~~~~li--------------~g~~~~a~~~~~~m~~~g~~p~~- 255 (648)
.. ....|+.++|.+ +|+... .++...|...+ .|++++|..+|++.... |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 53 345688877765 665442 13445565544 25788999999998873 432
Q ss_pred --hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhh-------cC------CCC
Q 006364 256 --VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDE-------LS------CRE 320 (648)
Q Consensus 256 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~------~~~ 320 (648)
..|..........+. ..+.. ++. .+.++++.|..++.. +. .++
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 223222211100110 00111 110 012233444433332 11 111
Q ss_pred --------cccHHHHHHHHHhc----CCc----HHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-------CchhhHH---
Q 006364 321 --------IISWNALISGYAQN----GLS----LAAVQAFFGVIKESKPNAYTFGSVLNAVGA-------AEDISLK--- 374 (648)
Q Consensus 321 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-------~~~~~~~--- 374 (648)
...|...+.....+ ++. ..++.+|++.....+-+...|......+.+ .| +.+
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~ 299 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAK 299 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhh
Confidence 13444444332222 222 367778888877445567777777766654 56 655
Q ss_pred ----HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHhCCChHHHHHHH
Q 006364 375 ----HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SE-FAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 375 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.|..++...++.-.+.+...+..++..+.+.|++++|..+|+...+ | +. ..|..++..+.+.|+.++|..+|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888887633445688899999999999999999999997653 3 33 58999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH-hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-
Q 006364 447 KEMENKGVRPD-SITFLSVLTV-CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG- 522 (648)
Q Consensus 447 ~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 522 (648)
++..+. .|+ ...|...... +...|++++|..+|+...+. .|+ ...|..+++.+.+.|+.++|..+|++...
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999875 333 3333332222 33589999999999999876 465 88999999999999999999999998642
Q ss_pred ---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 523 ---GP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 523 ---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
.| ....|...+.....+|+.+.+..+.+++.+..|.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22 2458999999999999999999999999998884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-14 Score=149.93 Aligned_cols=300 Identities=9% Similarity=-0.021 Sum_probs=219.0
Q ss_pred hhHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHhhcCC-CCcccHHH
Q 006364 256 VTFIGLIHAISI----GNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FESMQDSEKVFDELSC-REIISWNA 326 (648)
Q Consensus 256 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ 326 (648)
..+..+-..+.. .+++++|...++...+.| ++..+..|..+|.. .++.++|.+.|++..+ .+...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 333444444444 566666766666666654 34555666666665 5677777777766543 35566666
Q ss_pred HHHHHHh----cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006364 327 LISGYAQ----NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSAL 398 (648)
Q Consensus 327 li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (648)
+...|.. .+++++|++.|++.... .+...+..+...+.. .+ +.+.+...+....+.| ++..+..+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~--~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQ--DYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 6667766 67777888887777662 234455555555543 45 7788888887777654 45566667
Q ss_pred HHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 399 LDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 399 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
..+|.. .++.++|.++|+...+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 777777 8899999999988765 4677888888888887 89999999999998865 345666666666
Q ss_pred cccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---
Q 006364 469 GRNG---MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGACRI--- 538 (648)
Q Consensus 469 ~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--- 538 (648)
...| +.++|+++|++..+. .+...+..|...|.. .+++++|...+++.....++..+..|...+..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6545 899999999998754 357788889999988 89999999999987656678889999999988
Q ss_pred -cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 006364 539 -HGNVEMGERIADALMKMEPA---GSGSYVLMSNLYAE 572 (648)
Q Consensus 539 -~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 572 (648)
.+|.++|...++++.+.+|+ ++.....++.++..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 77777777766554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=155.99 Aligned_cols=230 Identities=9% Similarity=-0.072 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAII 430 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 430 (648)
+...+..+...+.+.| +++.|...+..+.+.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEG--DLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4556888888888999 9999999999999875 45688899999999999999999999998763 4678999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS-----------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSC 499 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 499 (648)
..|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|+.+|+++.+...-.++...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999999873 3432 22334577889999999999999999876332235889999
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+...|.+.|++++|.+.++++. .+.+..+|..+..++...|++++|...+++++++.|.++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999865 45578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006364 578 MVAILRKGMKS 588 (648)
Q Consensus 578 ~a~~~~~~m~~ 588 (648)
+|.+.+++..+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-16 Score=154.44 Aligned_cols=304 Identities=9% Similarity=-0.034 Sum_probs=217.7
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHH-HHHHhHh--CCCC--CHHHHHHHHHHhccCchhhHHHHHH
Q 006364 304 ESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQ-AFFGVIK--ESKP--NAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~--~~~p--~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
+.++.+...|+.+...+.. ++...|++++|++ .|.+... ...| +...+..+...+...| +++.|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~ 85 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG--DLPNAVL 85 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT--CHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC--CHHHHHH
Confidence 3445555555555443322 3445588999998 8887765 2222 4566778888899999 9999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
.+..+.+.. +.+...+..+...|.+.|++++|.+.|+...+ .+..+|..+...|...|++++|+..|+++....
T Consensus 86 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 86 LFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999999865 45678889999999999999999999997653 478899999999999999999999999999853
Q ss_pred CCH-HHHHH---------------HHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 456 PDS-ITFLS---------------VLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 456 p~~-~t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
|+. ..+.. .+..+...|++++|..+|+.+.+...-.++..++..+...|.+.|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 22211 23334488999999999999987633222488999999999999999999999988
Q ss_pred CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCce
Q 006364 520 IP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGF 597 (648)
Q Consensus 520 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 597 (648)
+. .+.+..+|..++..+...|++++|...+++++++.|.++..+..++.+|...|++++|.+.+++..+.. |+...
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 320 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRG 320 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC--
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCC
Confidence 65 445688999999999999999999999999999999999999999999999999999999999886532 21100
Q ss_pred eEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 598 SWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 598 s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
. ....+|....++..+..+...+.
T Consensus 321 ~---------------~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 321 P---------------RGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp -------------------CCCCCHHHHHHHHHHHHHHT
T ss_pred c---------------cccccchhhHHHHHHHHHHHHhC
Confidence 0 01235666677777766666554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-16 Score=151.37 Aligned_cols=256 Identities=10% Similarity=-0.020 Sum_probs=182.7
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMY 402 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (648)
.|..+...+...|++++|+..|+++....+.+..++..+..++...| +.+.|...+..+.+.. +.+...+..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE--KDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34444444555555555555555554433334444445555555555 5555555555555442 22445555666666
Q ss_pred hhcCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEK---SEFAWTAI--------------IS-ALARHGDYESVMNQFKEMENKGVRPDSITFLSV 464 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 464 (648)
...|++++|.+.|+...+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6666666666666654421 22222222 22 3677888999999999998752 3367888888
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|..+++.+.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998765 565 7889999999999999999999998865 34567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPA------------GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
++.|...++++.+..|. ++..+..++.+|...|++++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999998 788999999999999999999998864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=175.18 Aligned_cols=132 Identities=11% Similarity=0.170 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 461 FLSVLTVCGRNGM-IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 461 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
|+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 57899999999888 99999999999998877765555554443333
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=150.60 Aligned_cols=373 Identities=10% Similarity=-0.007 Sum_probs=243.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCch
Q 006364 193 HVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLV 271 (648)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 271 (648)
....||.|-..|...|+.++|++.| ++|++++.........| ...+|+.+...|...|++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~-------------------~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECL-------------------RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHH-------------------HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH-------------------HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 4567888999999999999999987 46666666554333334 346788888899999999
Q ss_pred HHHHHHHHHHHHhc--C----C-CCchhHHHHHHHHHhc--CChHHHHHHHhhcCC--C-CcccHHHHHHH---HHhcCC
Q 006364 272 KEGRMIHGLCIKTN--F----L-SEPSVCNCLITMYARF--ESMQDSEKVFDELSC--R-EIISWNALISG---YAQNGL 336 (648)
Q Consensus 272 ~~a~~~~~~~~~~~--~----~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~ 336 (648)
++|...++...+.. + . ....++..+..++.+. +++++|...|++..+ | ++..+..+... +...++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 99999988876531 1 1 1234555555555554 468899999988642 3 44455554444 445678
Q ss_pred cHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 337 SLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 337 ~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.++|++.|++..+-.+.+..++..+...+.. .+ ..+++...+....... +.+..++..+...|.+.|++++|.
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~--~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGE--EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 8899999988877444556666555544433 34 6778888888887765 346677888999999999999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHhC-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 413 RVFNETQE--K-SEFAWTAIISALARH-------------------GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 413 ~~~~~~~~--~-~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
..|+...+ | +..+|..+..+|... +..++|+..|++..+.. +.+..++..+...+..
T Consensus 268 ~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 99987653 3 556677666665432 23567888888877642 2334667788888999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPD----HYSCMVD-MLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 544 (648)
.|++++|+..|++..+. .|+.. .+..+.. .+...|++++|+..+++.. ..|+...+.. ....
T Consensus 347 ~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHH
Confidence 99999999999998754 44322 2333333 3456789999999888754 4454433322 2344
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 600 (648)
+++++++.++.+|.++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 56778888899999999999999999999999999999998877665444445554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-13 Score=142.34 Aligned_cols=336 Identities=11% Similarity=0.036 Sum_probs=274.5
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCC
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISI----GNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FES 305 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 305 (648)
+++++|+..|++....| +...+..+-..+.. .++.++|...+....+.| ++..+..|..+|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 34555666666665543 45566667777777 899999999999998865 56777788888888 789
Q ss_pred hHHHHHHHhhcCCC-CcccHHHHHHHHHh----cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHH
Q 006364 306 MQDSEKVFDELSCR-EIISWNALISGYAQ----NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHG 376 (648)
Q Consensus 306 ~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a 376 (648)
+++|...|+...+. ++..+..+...|.. .+++++|++.|++..+. .+...+..+-..+.. .+ +.+.|
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A 206 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVER--NDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCc--CHHHH
Confidence 99999999987644 56778888888887 78999999999998873 256677777777765 66 99999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHH
Q 006364 377 QRCHSHIIKVGLDSDPIVGSALLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFK 447 (648)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 447 (648)
...+....+.| ++..+..+..+|.. .+++++|.++|+...+ .+...+..+...|.. .++.++|+..|+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99999998875 56677888888886 8999999999998765 467788888888888 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhh
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRN-----GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG---RLEEAEELVGQ 519 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 519 (648)
+..+.| +...+..+...+... +++++|+..|+...+. + +...+..+...|.+.| ++++|.+.+++
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 998764 445666666777666 8999999999998764 2 4567788888888766 88999999998
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCCC
Q 006364 520 IPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 591 (648)
.....++..+..|...+.. .++.++|...++++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7756788899999999998 899999999999998864 57899999999998 8999999999999887663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-15 Score=142.59 Aligned_cols=245 Identities=9% Similarity=0.015 Sum_probs=200.8
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCH--HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNA--YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (648)
|.-....|++..|+..++.... ..|+. .....+..++...| +.+.+...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-~~p~~~~e~~~~l~r~yi~~g--~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-SSPERDVERDVFLYRAYLAQR--KYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHTT--CHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc-CCchhhHHHHHHHHHHHHHCC--CHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3455678999999999887644 22332 34456778889899 88888875543 2456777888999999999
Q ss_pred CCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 406 GSIFESQRVFNETQ----EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 406 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
|+.++|.+.++.+. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566788888999999999999999987 45678888999999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 481 FDSMLKDYHIEPSPDH---YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
|+.+.+. .|+... ...++..+...|++++|..+|+++. .+.++..|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999866 576321 2234455556699999999999876 5578889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcHH-HHHHHHHHhh
Q 006364 556 EPAGSGSYVLMSNLYAEKGDWEM-VAILRKGMKS 588 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 588 (648)
+|+++.++..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5688887764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-17 Score=174.57 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=111.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHhccCC-------CCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006364 92 VYVGNALITMYSRWGRLVEARRVFDEMP-------NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS 164 (648)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 164 (648)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+||+.| ..++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3589999999999999999999997653 489999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCCh-hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCC
Q 006364 165 AASACGHEKNL-ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMH 221 (648)
Q Consensus 165 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (648)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999998875 7888999999999999999999999888777766665555544443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=133.04 Aligned_cols=192 Identities=11% Similarity=0.010 Sum_probs=159.3
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSV 464 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 464 (648)
++++..+..+...+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45677788889999999999999999997654 36788999999999999999999999999984 454 5778888
Q ss_pred HHHhccc-----------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHH
Q 006364 465 LTVCGRN-----------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 465 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
..++... |++++|+..|++..+. .|+ ...+..+..+|...|++++|...+++.. . .++..|.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8889999 9999999999999865 786 8899999999999999999999998764 4 7888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+..++...|++++|...++++++.+|+++..+..++.++...|++++|.+.+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=135.85 Aligned_cols=272 Identities=9% Similarity=-0.027 Sum_probs=152.9
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcccHHHHHHHH
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELS---CREIISWNALISGY 331 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 331 (648)
...+......+...|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445566667777888888888888877754 3456677777888888888888888887764 23556777778888
Q ss_pred HhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHH-HH-HHhhcCCHH
Q 006364 332 AQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSAL-LD-MYGKRGSIF 409 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 409 (648)
...|++++|+..|+++....+.+...+..+...+ |+......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 8888888888888887763332332222221000 000000011 11 244444555
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 410 ESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 410 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+|.+.++.+.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544331 234455555555555566666666665555431 22345555555555666666666666665544
Q ss_pred hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 487 DYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-------------GLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 487 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
. .|+ ...+..+...+.+.|++++|.+.++++. ..| +..+|..+..++...|+.+.|..++++
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 333 5555566666666666666666655443 111 245566666666666666666666655
Q ss_pred HHhc
Q 006364 552 LMKM 555 (648)
Q Consensus 552 ~~~~ 555 (648)
.++.
T Consensus 312 ~l~~ 315 (327)
T 3cv0_A 312 NVEP 315 (327)
T ss_dssp CSHH
T ss_pred HHHh
Confidence 4443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-14 Score=132.75 Aligned_cols=212 Identities=8% Similarity=-0.017 Sum_probs=165.0
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C-------hhHHHHHH
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S-------EFAWTAII 430 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li 430 (648)
+...+...| +++.|...+..+.+.. .+...+..+...|...|++++|.+.|+...+ | + ..+|..+.
T Consensus 11 ~g~~~~~~~--~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 11 EGNKFYKAR--QFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444 4444444444444444 4455566666666667777777777665543 1 1 46788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
..|...|++++|+..|++... ..|+.. .+...|++++|...++.+... .|+ ...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcC
Confidence 999999999999999999888 345533 355668899999999998743 665 7888999999999999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+++|...+++.. .+.+..+|..+...+...|+++.|...++++++..|+++..|..++.+|...|++++|.+.+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998865 445688899999999999999999999999999999999999999999999999999999998876
Q ss_pred h
Q 006364 588 S 588 (648)
Q Consensus 588 ~ 588 (648)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=142.70 Aligned_cols=341 Identities=12% Similarity=0.006 Sum_probs=170.4
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCC-------C---C-chhhH----HHhc---CChhhHHHHHHHHHHCCCCCCh
Q 006364 194 VSVGNVLMSTYSKCEVTGDANKVFRRMHD-------R---N-VISWT----TMIS---MNREDAVSLFKEMRLDGVCPND 255 (648)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---~-~~~~~----~li~---g~~~~a~~~~~~m~~~g~~p~~ 255 (648)
..+|+.+..+|...|++++|...++.... + + ..+++ +++. +++++|++.|++.... .|+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~ 171 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKN 171 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCC
Confidence 34677788888888999888887765421 1 1 11111 1111 4566666666665543 3433
Q ss_pred h-hHHHHHHH---HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHhhcC---CCCcccH
Q 006364 256 V-TFIGLIHA---ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FESMQDSEKVFDELS---CREIISW 324 (648)
Q Consensus 256 ~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~---~~~~~~~ 324 (648)
. .+..+..+ +...++.+.|.+.++..++.. +.+..++..+...+.. .|+.++|.+.+++.. ..+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 2 22222222 233455555666665555543 2233334333333333 344555666655442 2234455
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 325 NALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
..+...|...|++++|+..|++..+..+.+..++..+...+...+ ....... ..........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~--~~~~~~~----------------~~~~~~~~~~ 312 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV--FQVMNLR----------------ENGMYGKRKL 312 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HHHHHC----------------------CHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HHhhhHH----------------HHHHHHHHHH
Confidence 666666666666666666666665533334444444333322111 0000000 0000001111
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCcHHHHH
Q 006364 405 RGSIFESQRVFNETQ---EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI--TFLSVLT-VCGRNGMIHKGR 478 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~ 478 (648)
.+..+.|...|+... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 234567777776554 3466789999999999999999999999998854333321 2222222 235789999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
..|++..+ +.|+........ +.+.++++... .+.++.+|..|+..+...|++++|.+.|+++++++
T Consensus 393 ~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 393 HHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999874 577643332222 22333333322 34567789999999999999999999999999999
Q ss_pred CCCchhHHHHH
Q 006364 557 PAGSGSYVLMS 567 (648)
Q Consensus 557 p~~~~~~~~l~ 567 (648)
|.+|.++..+|
T Consensus 461 ~~~p~a~~~~G 471 (472)
T 4g1t_A 461 SLIPSASSWNG 471 (472)
T ss_dssp -----------
T ss_pred CCCCcHhhcCC
Confidence 99888776655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-14 Score=131.34 Aligned_cols=233 Identities=10% Similarity=0.013 Sum_probs=171.1
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--Cc----hhHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--SD----PIVG 395 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 395 (648)
.|..+...+...|++++|+..|++... . .+...+..+..++...| +.+.|...+....+.... ++ ...+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 344555556666666666666666655 4 55556666666666666 666666666665543211 11 4667
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcH
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMI 474 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 474 (648)
..+...|.+.|++++|...|+...+.+.. ...+...|++++|+..++++... .|+ ...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77888888888888888888876542111 24566678889999999998874 343 46777888888999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
++|...|+.+.+. .|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+...+...|+++.|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998765 454 7889999999999999999999998765 345678899999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHHH
Q 006364 552 LMKME------PAGSGSYVLMSNL 569 (648)
Q Consensus 552 ~~~~~------p~~~~~~~~l~~~ 569 (648)
+.++. |.+...+..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 7777777666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=129.23 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCc
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAE 369 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~ 369 (648)
+......+...|++++|...|++..+ .+...|..+...|...|++++|+..|++... .+++..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence 33444555556666666666555431 2334555555555555555555555555544 111110
Q ss_pred hhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 370 DISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.....+..+...|...|++++|.+.|+...+ .+..+|..+...|...|++++|+..|
T Consensus 72 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 72 --------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0112245566666666666666666665442 34566777777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC---HHHHHHHHhhCC
Q 006364 447 KEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR---LEEAEELVGQIP 521 (648)
Q Consensus 447 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 521 (648)
++..+. .|+ ...+..+...+...+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...+++..
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 776653 333 444544442343445778888887777654 555 6666667777777776 666666655543
Q ss_pred ----CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 522 ----GGPG------LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 522 ----~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
..|+ ..+|..+...+...|+++.|...++++++++|+++.++..+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1233 2567778888999999999999999999999999988888877766544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-13 Score=124.13 Aligned_cols=196 Identities=10% Similarity=-0.022 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
...+..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788888899999999999987653 367788899999999999999999999988752 33567888888889
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
...|++++|.++++.+.+ .+..|+ ...+..+...+.+.|++++|...++++. .+.+...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 245675 7788889999999999999999998765 344678888999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-13 Score=127.37 Aligned_cols=239 Identities=8% Similarity=-0.083 Sum_probs=176.5
Q ss_pred cCCcHHHHHHHHHhHhC-C---CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 334 NGLSLAAVQAFFGVIKE-S---KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~~-~---~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
.|++++|+..|+++... . +.+..++..+...+...| +.+.|...+..+.+.. +.+...+..+...|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35566666666666652 1 113445556666666666 6777777777666654 335677788888888889999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 410 ESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 410 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+|.+.|+...+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998887653 3678899999999999999999999999988 456655555555666778999999999988876
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-PG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.. .++...+ .++..+...++.++|...+++.... |. ..+|..+...+...|++++|...++++++.+|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 52 2334444 3677788888899999999886633 32 57888999999999999999999999999999876
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 66788889998887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=120.19 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=165.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
++..+..+...|...|++++|.+.|+...+ .+...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456677788888899999999999887653 357788889999999999999999999988752 3356788888888
Q ss_pred hccc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 468 CGRN-GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 468 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|...++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8999 999999999999876 244565 7788889999999999999999988765 3345788888999999999999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEP-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+|...++++.+..| .++..+..++.++...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999 8889999999999999999999999888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=124.68 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455666777788888888888888887654 356788888888889999999999999888752 335677788888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...|++++|.++++++.+. .| +...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 888899999999999888765 44 47788888888999999999999888765 3456778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999998888999999999999999999999888765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-11 Score=118.22 Aligned_cols=189 Identities=7% Similarity=-0.058 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006364 393 IVGSALLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFKEMENKGVRPDSITFLS 463 (648)
Q Consensus 393 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 463 (648)
..+..+...|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHH
Confidence 344455555555 6677777776665543 255666677777777 777777777777777654 5566666
Q ss_pred HHHHhcc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006364 464 VLTVCGR----NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGA 535 (648)
Q Consensus 464 ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 535 (648)
+...+.. .|++++|+..|++..+. + +...+..+...|.. .+++++|...+++.....++..+..+...
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 191 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666766 77788888877777654 2 45566667777776 77888888777766544556677777777
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCC
Q 006364 536 CRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 536 ~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 590 (648)
+.. .+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 7888888888888877765 5677788888887 788888888887766554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-12 Score=112.68 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567788888888888888888888888774 44 4567778888888889999999888888654 555 677777
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+...+...+++++|...+.+.. .+.+...+..+...+...|++++|.+.++++++.+|.++.+|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888888899999988887754 44567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 006364 578 MVAILRKGMKSK 589 (648)
Q Consensus 578 ~a~~~~~~m~~~ 589 (648)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-12 Score=126.10 Aligned_cols=244 Identities=9% Similarity=0.041 Sum_probs=190.8
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhh-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDIS-LKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
..|+.+...+...|++++|+..|++...-.+-+...|..+..++...| . +++|...+..+++... -+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 456667777777788888888888777744556677777777777777 6 7888888888777653 36677888888
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcc-cCcHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGR-NGMIH 475 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 475 (648)
+|.+.|++++|+..|+...+ .+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 88889999999999987763 47788999999999999999999999999884 44 46778888888877 56546
Q ss_pred HH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC--CHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC------
Q 006364 476 KG-----RHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG--RLEEAEELVGQIPGG-PGLSVLQSLLGACRIHG------ 540 (648)
Q Consensus 476 ~a-----~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g------ 540 (648)
+| +..|++.++. .|+ ...|..+..+|.+.| ++++|.+.+.++... .+...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 5788888754 786 788888999998888 689999888877433 45677888888888764
Q ss_pred --C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 006364 541 --N-VEMGERIADAL-MKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 541 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 573 (648)
+ .++|.++++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999999998888877643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=121.17 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
..|..+...+...|++++|+..|++.....+. +...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-------------------------------------~~~~~~~la~~ 66 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-------------------------------------DAIPYINFANL 66 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-------------------------------------cHHHHHHHHHH
Confidence 45555556666666666666666655542222 34445555566
Q ss_pred HhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
|.+.|++++|.+.|+...+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 6666677777666665442 356778888888888999999999999888752 345677888888889999999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
.+++++.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...+...|+.+.|...++++.+.
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999998765 454 7888899999999999999999998765 3456788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcC
Q 006364 556 EPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~g 574 (648)
.|+++..+..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999998888776665444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-12 Score=128.55 Aligned_cols=333 Identities=13% Similarity=0.048 Sum_probs=144.5
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCch---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----C
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLV---KEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE-----S 305 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 305 (648)
|++++|+++|++....|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++...+ +
T Consensus 17 g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 556666666666555442 22222233333334444 5555555555433 3333444444333333 4
Q ss_pred hHHHHHHHhhcCCC-CcccHHHHHHHHHhcCCcHH---HHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHH
Q 006364 306 MQDSEKVFDELSCR-EIISWNALISGYAQNGLSLA---AVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCH 380 (648)
Q Consensus 306 ~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~ 380 (648)
.++|...|++...+ +...+..|...|...+...+ +.+.+..... +. ......+...+...+ ..+.+....
T Consensus 90 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~--~~~~~~~~a 164 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG--TYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT--CGGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC--CcccCHHHH
Confidence 45555555554322 33455555555554443222 2233332222 22 112222222222222 122222211
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcC---CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhC----CChHHHHHHHHHHH
Q 006364 381 SHIIKVGLDSDPIVGSALLDMYGKRG---SIFESQRVFNETQEK---SEFAWTAIISALARH----GDYESVMNQFKEME 450 (648)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 450 (648)
....+.-...++..+..|..+|.+.| +.++|.+.|....+. +...+..+...|... +++++|+..|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 12222222223335556666666666 666666666554322 222334455555433 46666666666654
Q ss_pred HCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHhhCCC
Q 006364 451 NKGVRPDSITFLSVLTV-C--GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG-----RLEEAEELVGQIPG 522 (648)
Q Consensus 451 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 522 (648)
.| +...+..+... + ...|++++|.+.|++..+. | +...+..|...|. .| ++++|...|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 22 22333333333 2 3456666666666665433 2 3445555555554 33 6666666666655
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCC
Q 006364 523 GPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 590 (648)
+.++..+..|...|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|...+++..+.|
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555555555555444 22666666666665543 344556666666654 335666666666555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-11 Score=116.84 Aligned_cols=226 Identities=9% Similarity=-0.064 Sum_probs=166.9
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSA 397 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (648)
.++..+...+...|++++|+..|++..+ +.+..++..+...+.. .+ +.++|...+....+.+ ++..+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555554 2233444444455555 55 6666666666666654 5666677
Q ss_pred HHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 398 LLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 398 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
+...|.. .+++++|.+.|+...+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 8888888888886654 367788888888888 899999999999998865 556666777777
Q ss_pred cc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 006364 469 GR----NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGACRI-- 538 (648)
Q Consensus 469 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 538 (648)
.. .+++++|+..|+...+. .+...+..+...|.. .+++++|...+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76 89999999999998754 246778888899998 99999999999886644457788888889988
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCch
Q 006364 539 --HGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 539 --~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.++.++|...++++.+.+|+++.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=116.60 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=152.8
Q ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 321 IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
...|..+...+...|++++|+..|+++....+. +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-------------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------------------------------hHHHHHHHHH
Confidence 456667777777777777777777766542222 3344455555
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 476 (648)
.|...|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++...+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666665432 3556777788888888888888888888876434454 4667777888888999999
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
|..+|+.+.+. .|+ ...+..++..+.+.|++++|...++++. .+.+...+..+...+...|+.+.|.+.++++.
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999888765 454 7788889999999999999999988764 34567778888889999999999999999999
Q ss_pred hcCCCCchhHHH
Q 006364 554 KMEPAGSGSYVL 565 (648)
Q Consensus 554 ~~~p~~~~~~~~ 565 (648)
+..|+++.....
T Consensus 237 ~~~p~~~~~~~~ 248 (252)
T 2ho1_A 237 RLYPGSLEYQEF 248 (252)
T ss_dssp HHCTTSHHHHHH
T ss_pred HHCCCCHHHHHH
Confidence 999998766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=132.55 Aligned_cols=208 Identities=6% Similarity=-0.037 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI-FESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
..+.+...+...... .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555543332 234677788888888899999 999999987653 357799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccc---------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRN---------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV--------GR 509 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~--------g~ 509 (648)
+..+ ..|+...+..+...+... |++++|++.|++..+. .|+ ...|..+..+|... |+
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998 468888889999999999 9999999999999865 676 88999999999999 99
Q ss_pred HHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 510 LEEAEELVGQIP-GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 510 ~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
+++|...+++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999875 234 788999999999999999999999999999999999999999999999999999987554
Q ss_pred H
Q 006364 585 G 585 (648)
Q Consensus 585 ~ 585 (648)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=112.27 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARH-GDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
...+..+...|...|++++|.+.|+...+ .+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 44555666667777777777777766542 3566788888888999 999999999999887434444 467788888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC-CCHHHHHHHHHHHHHcCCH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GG-PGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~ 542 (648)
++...|++++|...++.+.+. .|+ ...+..++..+.+.|++++|...++++. .+ .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 899999999999999998765 565 7888899999999999999999998765 33 5677787777888999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH
Q 006364 543 EMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+.+...++.+.+..|+++.....+
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999998776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-12 Score=114.92 Aligned_cols=193 Identities=11% Similarity=-0.002 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHH
Q 006364 287 LSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLN 363 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~ 363 (648)
+++...+..+...+.+.|++++|...|++.... +...|..+...+.+.|++++|+..|++..+..+.+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------- 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------- 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------
Confidence 344555555555566666666666655554322 3344555555555555555555555555442222333
Q ss_pred HhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-----------CCHHHHHHHHhhcCC--C-ChhHHHHH
Q 006364 364 AVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR-----------GSIFESQRVFNETQE--K-SEFAWTAI 429 (648)
Q Consensus 364 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l 429 (648)
.+..+...|.+. |++++|...|+...+ | +...|..+
T Consensus 75 ------------------------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 75 ------------------------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 333444444444 677777777765542 2 45677777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 508 (648)
...|...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcc
Confidence 777778888888888888877765 56677777777777888888888888877654 565 667777777777888
Q ss_pred CHHHHHHHHhhCC
Q 006364 509 RLEEAEELVGQIP 521 (648)
Q Consensus 509 ~~~~A~~~~~~~~ 521 (648)
++++|...+++..
T Consensus 200 ~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 200 KAEEAARAAALEH 212 (217)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHh
Confidence 8888777776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=117.95 Aligned_cols=213 Identities=7% Similarity=-0.012 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KS----EFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|+...+ ++ ..+|..+...+...|++++|+..
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp CHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4455555555444432 22344666777788888888888888887654 22 23488999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
|++..+.. +.+..++..+...+...|++++|+..|++.. .+.|+ ...+..+...+...+++++|.+.++++. .
T Consensus 97 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 97 YQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998852 3346788999999999999999999999886 44776 7788888834444569999999998865 3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 523 GPGLSVLQSLLGACRIHGN---VEMGERIADALMKME---PAG-----SGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+.+...+..+...+...|+ .+.|...++++.+.. |+. ..+|..++.+|...|++++|.+.+++..+.
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4457788888888888888 888999999999875 442 258889999999999999999999988753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=124.02 Aligned_cols=363 Identities=11% Similarity=0.040 Sum_probs=190.6
Q ss_pred hcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh---HHHHHHHhcCCCCCchhhHHH---hc-------CC
Q 006364 169 CGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVT---GDANKVFRRMHDRNVISWTTM---IS-------MN 235 (648)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l---i~-------g~ 235 (648)
+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|+...+.++..+..+ +. ++
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344455555555555555544 223333344444445555 555555554443222111111 00 14
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHH---HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC----hHH
Q 006364 236 REDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKE---GRMIHGLCIKTNFLSEPSVCNCLITMYARFES----MQD 308 (648)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~ 308 (648)
.++|+..|++....|.. ..+..+-..|...+..+. +.+.+......| ++.....|...|...+. .+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 45566666655554422 234444444443333222 222233222222 23444555555555553 333
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcC---CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Q 006364 309 SEKVFDELSCREIISWNALISGYAQNG---LSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK 385 (648)
Q Consensus 309 a~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~ 385 (648)
+..+++.....++..+..|...|...| +.++|++.|++......++...+
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~--------------------------- 216 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV--------------------------- 216 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH---------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH---------------------------
Confidence 444444445555556666666666666 55555555555544333333322
Q ss_pred hCCCCchhHHHHHHHHHhhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 386 VGLDSDPIVGSALLDMYGKR----GSIFESQRVFNETQEKSEFAWTAIISA-L--ARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 386 ~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
..|..+|... +++++|.++|+.....+...+..+... | ...++.++|+..|++..+.| +.
T Consensus 217 ----------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 217 ----------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp ----------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred ----------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 3334444332 577777777776663356667777666 3 45788888998888888776 45
Q ss_pred HHHHHHHHHhcccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHH
Q 006364 459 ITFLSVLTVCGRNG-----MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVL 529 (648)
Q Consensus 459 ~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 529 (648)
..+..+...|. .| ++++|...|+... .-+...+..|...|.. ..++++|...+++.....++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 55556665555 44 8899999988764 2346777777777766 34889999999887655556666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCCcHHHHHHHHHHhh
Q 006364 530 QSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYA--EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 530 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 588 (648)
..|...|.. ..|.+.|...++++.+.++.+.. ..+..+.. ..++..+|.++.++.+.
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 677766653 45889999999998887765433 33444432 33456666666655443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=129.75 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=130.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhcCC--C-C----cccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHH
Q 006364 289 EPSVCNCLITMYARFESMQDSEKVFDELSC--R-E----IISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFG 359 (648)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~ 359 (648)
....+......+...|++++|...|++... + + ...|..+...|...|++++|+..|++... ....+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL--- 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH---
Confidence 334455566677777777777777776542 2 2 13566666777777777777777776543 1001100
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHH
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAII 430 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li 430 (648)
.....+..+...|...|++++|...+++..+ ++ ..++..+.
T Consensus 85 ------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 85 ------------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 0122333344444444555555444443321 11 22444455
Q ss_pred HHHHhCCC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 431 SALARHGD--------------------YESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 431 ~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
..|...|+ +++|+..+++.... +-.|. ..++..+...+...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 55555555544321 11111 1234444555555555555555555544
Q ss_pred HhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 486 KDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 486 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
+...-.++ ...+..+...|...|++++|...+++.. ..++ ..++..+...+...|+++.|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 32111111 2245555555555555555555554432 0011 3344555555555566666665555555
Q ss_pred hcCCCC------chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 554 KMEPAG------SGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 554 ~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
++.+.. ..++..++.+|...|++++|.+.+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543222 335555555666666666665555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-12 Score=123.77 Aligned_cols=223 Identities=10% Similarity=0.024 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC-HHHHHHHHhhcCC---CChhHHHHHH
Q 006364 355 AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS-IFESQRVFNETQE---KSEFAWTAII 430 (648)
Q Consensus 355 ~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 430 (648)
...|..+...+...+ +.++|...+..+++.. +.+...|+.+...|.+.|+ +++|+..|++..+ .+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g--~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDE--RSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345666667777788 9999999999999875 3467788999999999997 9999999998764 4778999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh-c
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR-V 507 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~-~ 507 (648)
.++...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++++. .|+ ...|..+..+|.+ .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999984 44 5688999999999999999999999999865 776 8899999999999 6
Q ss_pred CCHHHH-----HHHHhhCC--CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC----
Q 006364 508 GRLEEA-----EELVGQIP--GGPGLSVLQSLLGACRIHG--NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG---- 574 (648)
Q Consensus 508 g~~~~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---- 574 (648)
|..++| +..+++.. .+.+...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 665888 46676654 3456789999999998888 689999999998 889999999999999999975
Q ss_pred -----CcHHHHHHHHHH
Q 006364 575 -----DWEMVAILRKGM 586 (648)
Q Consensus 575 -----~~~~a~~~~~~m 586 (648)
..++|.++++++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 258899999887
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=131.23 Aligned_cols=263 Identities=10% Similarity=-0.040 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC--C-Cc----ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 294 NCLITMYARFESMQDSEKVFDELSC--R-EI----ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++...-
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 115 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---------------- 115 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 3444556666666666666665532 1 21 24555556666666666666666554330
Q ss_pred cCchhhHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHhC
Q 006364 367 AAEDISLKHGQRCHSHIIKVG-LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---------SEFAWTAIISALARH 436 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 436 (648)
..+.+ .+.....+..+...|...|++++|...|++..+- ...+|..+...|...
T Consensus 116 ----------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 116 ----------------AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00000 0112344556666777777777777777654421 234677777788888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-
Q 006364 437 GD-----------------YESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS- 493 (648)
Q Consensus 437 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 493 (648)
|+ +++|+..+++..+. +-.|. ..++..+...+...|++++|..++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888887776542 11122 246677777888889999998888887643211112
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 006364 494 ---PDHYSCMVDMLGRVGRLEEAEELVGQIPG----G----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--- 559 (648)
Q Consensus 494 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--- 559 (648)
...+..+...|...|++++|...+++... . ....++..+...+...|+++.|...+++++++.+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 34778888889999999999888876541 1 124567788888999999999999999988765432
Q ss_pred ---chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 ---SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...+..++.+|...|++++|.+.+++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44888999999999999999999887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=125.70 Aligned_cols=291 Identities=9% Similarity=-0.001 Sum_probs=198.9
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChHHHHHHHhhcCC-----C----
Q 006364 253 PNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE----PSVCNCLITMYARFESMQDSEKVFDELSC-----R---- 319 (648)
Q Consensus 253 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~---- 319 (648)
+....+...-..+...|+++.|...++...+.+. .+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555666677888999999999998888742 22 24677888889999999999988876531 1
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA 397 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (648)
...++..+...|...|++++|+..+.+... ...++... ...++..
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~ 132 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---------------------------------EARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---------------------------------hHHHHHH
Confidence 235677788888999999999998887765 11111100 1122333
Q ss_pred HHHHHhhcCC--------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 398 LLDMYGKRGS--------------------IFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 398 li~~~~~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+...|...|+ +++|.+.+....+ + ...+|..+...|...|++++|+..|++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 4444444443221 1 234677778888888888888888888
Q ss_pred HHHCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 449 MENKG-VRPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 449 m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
..+.. -.++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 76521 1122 236777788888899999999888887643111111 56778888999999999999988876
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCcH
Q 006364 520 IP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKME------PAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 520 ~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 577 (648)
.. ..++ ..++..+...+...|+++.|...+++++++. +....++..++.+|...|+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 54 1122 4577888889999999999999999998764 233567888999998888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=116.55 Aligned_cols=213 Identities=10% Similarity=-0.004 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLD---SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+.+.|...+..+.+.... .+...+..+...|...|++++|...|+...+ .+..+|..+...|...|++++|+..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 899999999999876432 2467888999999999999999999998753 4688999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GG 523 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 523 (648)
|++..+.. +.+...+..+...+...|++++|...|+.+.+. .|+..........+.+.|++++|...+++.. .+
T Consensus 100 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 100 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 99999852 335788889999999999999999999999865 6764445555556677899999999996654 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA----GSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++...| .++..+...++.+.|...++++.+..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 343344 4777788888899999999998877663 3688999999999999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-12 Score=133.30 Aligned_cols=160 Identities=14% Similarity=0.193 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45788888888899999999999998887 4555 578888888999999999999999988754 787 8889999
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
..+|.+.|++++|++.+++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998765 345678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006364 579 VAILRKGMK 587 (648)
Q Consensus 579 a~~~~~~m~ 587 (648)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=124.71 Aligned_cols=198 Identities=12% Similarity=0.025 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGD--------------------YESV 442 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 442 (648)
...+..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34566677778888888888888776542 12 3377778888888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 006364 443 MNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 443 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 513 (648)
+..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888876542 11122 346777778888999999999999887643211122 44788889999999999999
Q ss_pred HHHHhhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcHHH
Q 006364 514 EELVGQIP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 514 ~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 579 (648)
...+++.. ..++ ..++..+...+...|+++.|...++++++..|.. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99887654 1112 4567888889999999999999999998875432 44788999999999999999
Q ss_pred HHHHHHHhhC
Q 006364 580 AILRKGMKSK 589 (648)
Q Consensus 580 ~~~~~~m~~~ 589 (648)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=108.23 Aligned_cols=167 Identities=9% Similarity=0.006 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567889999999999999999999998653 477899999999999999999999999998752 334566777778
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...++++.+...+....+. .|+ ...+..+...|.+.|++++|++.+++.. .+.+..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999998754 665 8889999999999999999999998865 4567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 006364 544 MGERIADALMKMEPAGS 560 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~ 560 (648)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=111.44 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=145.3
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-------Cchhh-------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGA-------AEDIS-------LKHGQRCHSHIIKVGLDSDPIVGSALLDMYG 403 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (648)
++|+..|++.....+.+...|..+...+.. .| + .++|..+++..++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455666666655334445555555444432 23 3 2667777776665322334556777777777
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCcHHHHH
Q 006364 404 KRGSIFESQRVFNETQE--K-SEF-AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC-GRNGMIHKGR 478 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 478 (648)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888876654 2 333 78888888888888888888888887742 23344444333222 2368888888
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GP--GLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.+|+...+. .|+ ...|..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888755 454 77778888888888888888888877642 33 356788888888888888888888888
Q ss_pred HHhcCCCCch
Q 006364 552 LMKMEPAGSG 561 (648)
Q Consensus 552 ~~~~~p~~~~ 561 (648)
+.+..|+++.
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 8888887553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-11 Score=105.37 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 334444445555555555555544432 1223444555555555566666666666655433 333 55566666666
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
...|++++|.+.++++. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666543 3345666777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHhh
Q 006364 583 RKGMKS 588 (648)
Q Consensus 583 ~~~m~~ 588 (648)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-09 Score=111.31 Aligned_cols=216 Identities=8% Similarity=0.059 Sum_probs=165.1
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ-RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNE 417 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 417 (648)
.+..+|++.....+-+...|.....-+...+ +.+.+. .++...+.. ++.+...+-..+....+.|+++.|.++|+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777777755556777777766666667 777886 999998864 455677788889999999999999999987
Q ss_pred cCC-------------CC------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHH--HHHHHhc
Q 006364 418 TQE-------------KS------------EFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDSITFL--SVLTVCG 469 (648)
Q Consensus 418 ~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~--~ll~a~~ 469 (648)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. +. +....|. +.+.- .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~-~ 481 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEY-H 481 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHH-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH-H
Confidence 653 21 236888888888899999999999999885 21 1233333 23322 2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHHcCCHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-P----GLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~ 544 (648)
..++.+.|..+|+...+.++ -+...+...++.....|+.+.|..+|++.... | ....|...+..-..+|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 24569999999999988732 23566778888888999999999999986632 3 35689999999999999999
Q ss_pred HHHHHHHHHhcCCCCch
Q 006364 545 GERIADALMKMEPAGSG 561 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~ 561 (648)
+..+.+++.+..|+++.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999999999998754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-11 Score=109.12 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE----KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVL 465 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 465 (648)
++..+..+...|.+.|++++|...|+...+ ++...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 334444555555555555555555554321 34444444555555555555555555555542 232 23444444
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-h-------HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-P-------DHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG---LSVLQSLL 533 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~ 533 (648)
..+...|++++|+..|++..+. .|+ . ..|..+...+.+.|++++|.+.+++.. ..|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555433 232 2 234444444555555555555554433 2232 23344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+... +...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 443222 2333344444444443333222 22233444788888776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=124.39 Aligned_cols=268 Identities=11% Similarity=0.004 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhcCChHHHHHHHhhcCCC---------Ccc
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP----SVCNCLITMYARFESMQDSEKVFDELSCR---------EII 322 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~ 322 (648)
..+..+...+...|+++.|...++...+.+. .+. .++..+...|...|++++|...|++.... ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444556678899999999999999998742 222 46888899999999999999998876421 235
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
.+..+...|...|++++|+..|++... ....+. +.....+..+..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---------------------------------LSEGRALYNLGN 174 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---------------------------------HHHHHHHHHHHH
Confidence 677788888899999999998887654 000010 011223444555
Q ss_pred HHhhcCC-----------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 401 MYGKRGS-----------------IFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 401 ~~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
.|...|+ +++|.+.+++..+ + ...+|..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5555555 5555555554321 1 234677788888888899998888888765311
Q ss_pred -CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCC---
Q 006364 455 -RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIPG--- 522 (648)
Q Consensus 455 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 522 (648)
.++ ..++..+...+...|++++|...+++..+...-..+ ...+..+...|.+.|++++|...+++...
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112 236777888889999999999999887643211111 56788889999999999999998887641
Q ss_pred -CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 523 -GP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 523 -~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.+ ...++..+...+...|++++|...++++.++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 134677888899999999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-11 Score=115.72 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=162.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChHHHHHHHhhcCC-----C----CcccHHHH
Q 006364 261 LIHAISIGNLVKEGRMIHGLCIKTNFLSE----PSVCNCLITMYARFESMQDSEKVFDELSC-----R----EIISWNAL 327 (648)
Q Consensus 261 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l 327 (648)
.-..+...|+++.|...++.+.+... .+ ..++..+...|...|++++|...+++... . ....+..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34456677778888777777777531 12 24566777777778888887777765431 1 13456667
Q ss_pred HHHHHhcCCcHHHHHHHHHhHh--CCCCC----HHHHHHHHHHhccCchhh-------------HHHHHHHHHHHHHhCC
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIK--ESKPN----AYTFGSVLNAVGAAEDIS-------------LKHGQRCHSHIIKVGL 388 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~a~~~~~~~~-------------~~~a~~~~~~~~~~~~ 388 (648)
...|...|++++|+..+.+... ...++ ..++..+...+...| + .+.+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~--------- 158 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG--KSFGCPGPQDTGEFPEDVRNA--------- 158 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HTSSSSSCC----CCHHHHHH---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC--cccccchhhhhhhhhhhHHHH---------
Confidence 7777788888888887777654 11122 113333333333333 3 0000000
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKEMENKGV-RPD- 457 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 457 (648)
+++|.+.++...+ + ...++..+...+...|++++|+..+++..+... .++
T Consensus 159 -------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 159 -------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 4444444433221 1 133566677777777777777777777654210 111
Q ss_pred ---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC--
Q 006364 458 ---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GP-- 524 (648)
Q Consensus 458 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-- 524 (648)
..++..+...+...|++++|..+++...+...-.++ ...+..+...+...|++++|...+++... .+
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 236667777778888888888888776543111111 56777888888888888888888876541 11
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 525 --GLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 525 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
...++..+...+...|+++.|...++++.++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1446777888899999999999999999887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=115.34 Aligned_cols=233 Identities=12% Similarity=0.139 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC------
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV-------GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE------ 420 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 420 (648)
+..++..+...+...| +++.|..++..+.+. ..+.....+..+...|...|++++|...|++..+
T Consensus 26 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888 888888888887763 3344556777888888888888888888876542
Q ss_pred -C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 421 -K----SEFAWTAIISALARHGDYESVMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 421 -~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
+ ...+|..+...|...|++++|+..|++..+. +-.|+ ...+..+...+...|++++|+++++.+.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2456778888888888888888888887763 22232 3556777778888888888888888876431
Q ss_pred -----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----------CCC-------HHHHHHHHHHHHHcCCHHHH
Q 006364 489 -----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----------GPG-------LSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 489 -----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-------~~~~~~l~~~~~~~g~~~~a 545 (648)
+-.|. ...+..+...|.+.|++++|...++++.. .+. ...+..+...+...+.+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11333 56778888888888888888888876541 011 11222233344455566666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...++.+....|..+.++..++.+|...|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777888889999999999999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-10 Score=108.30 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHh-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHh
Q 006364 374 KHGQRCHSHIIKVGLDSDPIVGSALLDMYG-------KRGSI-------FESQRVFNETQE---K-SEFAWTAIISALAR 435 (648)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 435 (648)
+.+..+|+..++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777653 456777777777765 35886 899999997654 3 56689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh-hcCCHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDS-I-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLG-RVGRLE 511 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 511 (648)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 45653 3 7888999999999999999999999754 454 555554444422 369999
Q ss_pred HHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 512 EAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM---EPA-GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 512 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
+|..+|++.. .+.++..|..++..+...|+.+.|..+++++++. .|+ ....|..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875 3456889999999999999999999999999996 443 567899999999999999999999998
Q ss_pred HhhCC
Q 006364 586 MKSKG 590 (648)
Q Consensus 586 m~~~~ 590 (648)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-10 Score=104.37 Aligned_cols=207 Identities=11% Similarity=0.055 Sum_probs=164.0
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHH
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTA 428 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 428 (648)
+.|+..+......+...| +.++|...+....+...+++...+..+..+|.+.|++++|.+.|+...+ | +...|..
T Consensus 4 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 346678888888899999 9999999999999987657777777799999999999999999998764 3 5678999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPD-S-------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHY 497 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~ 497 (648)
+...|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|++.|++.. .+.|+ ...|
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHH
Confidence 999999999999999999999884 444 3 457777788899999999999999996 45776 5678
Q ss_pred HHHHHHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 498 SCMVDMLGRVGRL--EEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 498 ~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
..+..+|...|+. ++|..+. ..+...+.... ....+++++|...+++++++.|+++.+...+..+...
T Consensus 157 ~~l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 157 YSLGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 8888888776653 3332221 22333343333 3455678999999999999999999988888777543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-10 Score=98.44 Aligned_cols=167 Identities=9% Similarity=-0.051 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
...+..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 34566778889999999999999998875 36778999999999999999999999999885 234577888888999
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
...|++++|.++++.+.+. .| +...+..+...+...|++++|...++++. .+.+..++..+...+...|+++.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999765 45 47888999999999999999999998865 345678899999999999999999
Q ss_pred HHHHHHHHhcCCCCchh
Q 006364 546 ERIADALMKMEPAGSGS 562 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~ 562 (648)
...++++.+..|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999998887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-10 Score=110.96 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCCCCC-hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHIEPS-PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~ 495 (648)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|+..+++..+. .+..|. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 455566666666666666666666553200 011 135556666666666666666666665531 012143 55
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHH
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP------GGPG-LSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
++..+...|.+.|++++|...+++.. ..|. ...+..+...+...|+ .+.|...+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 66666666777777777766665543 0111 1223445555666666 45555555443 222344456777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=119.24 Aligned_cols=177 Identities=9% Similarity=-0.042 Sum_probs=156.5
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDY-ESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.++++.+.++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665443 3678899999999999999 9999999999884 454 788999999999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc--------CCH
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRV---------GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH--------GNV 542 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~ 542 (648)
+... .+.|+...+..+..+|... |++++|...+++.. .+.+...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9997 4578889999999999999 99999999999865 455688999999999998 999
Q ss_pred HHHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEP---AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++|...++++++++| .++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=115.53 Aligned_cols=240 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCC--------C---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSC--------R---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF 358 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 358 (648)
..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------- 97 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--------- 97 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 34456666666666777766666665532 1 123455555556666666666665554432
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-------C----ChhHHH
Q 006364 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------K----SEFAWT 427 (648)
Q Consensus 359 ~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~ 427 (648)
+.........+.....+..+...|...|++++|.+.|++..+ + ...+|.
T Consensus 98 --------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 98 --------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp --------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 000000001122345566777778888888888887776542 1 345678
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc------CCCCC-
Q 006364 428 AIISALARHGDYESVMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY------HIEPS- 493 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~- 493 (648)
.+...+...|++++|+..|+++.+. +..|+ ..++..+...+...|++++|..+++++.+.. ...|.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8888899999999999999988763 22333 3567788888899999999999999887531 11222
Q ss_pred ------hHHHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 494 ------PDHYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 494 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
...+..+...+...+.+.+|...++.... +....+|..+...+...|++++|...+++++++.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12223333444455566666666666552 234567888999999999999999999999988764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=107.26 Aligned_cols=164 Identities=8% Similarity=0.018 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-H
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-S 458 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 458 (648)
.+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4566777888888888888888876542 11 247888999999999999999999988762 23233 5
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC-hHHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS-PDHYSCMVDMLGRVGR---LEEAEELVGQIPGGPG-LSVLQS 531 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 531 (648)
.++..+...+...|++++|...+++..+...- .|. ...+..+...+...|+ +++|..++++....|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 67888889999999999999999987643211 232 4446778899999999 9999999999865443 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 532 LLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+...+...|+++.|...++++.++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-08 Score=101.69 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=136.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHH
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQE----------K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVR--P--DSI 459 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 459 (648)
+..+...|...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566777788888888888775532 1 1235666778888899999999999887763221 1 134
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCCCC-CC-----HHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYS-----CMVDMLGRVGRLEEAEELVGQIPGG-PG-----LSV 528 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~ 528 (648)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.... |. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 667777788889999999999988764411111111121 2344577899999999999887521 21 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..+...+...|+.++|...++++.+..+.. ...+..++.+|...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788889999999999999887754321 24777889999999999999998887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-09 Score=102.78 Aligned_cols=162 Identities=9% Similarity=0.055 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCCC-hHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEPS-PDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~ 496 (648)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|++.|++..+... ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4555566666666666666666655441 11111 23455566666666666666666666654100 1233 555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP----G--GPG-LSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+..+...+.+.|++++|...+++.. . .|. ...+..+...+...++ +..|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 6666666666666666666665432 1 121 2233334444445555 44444444441 1123334556677
Q ss_pred HHHHHhcCCcHHHHHHHHHHh
Q 006364 567 SNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-08 Score=102.47 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHhcCCcHHHH-HHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC----------CCC
Q 006364 322 ISWNALISGYAQNGLSLAAV-QAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG----------LDS 390 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~----------~~~ 390 (648)
..|-..+.-+...|+.++|. ++|++.....+.+...+...+....+.+ +.+.|..+++.+.+.. .+.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~--~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT--KIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 34444444444445555554 5555544433333333444444444444 5555555555544321 111
Q ss_pred -----------chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCC
Q 006364 391 -----------DPIVGSALLDMYGKRGSIFESQRVFNETQEK----SEFAWTAIISALARH-GDYESVMNQFKEMENKGV 454 (648)
Q Consensus 391 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 454 (648)
...+|...+....+.|.++.|..+|....+. ....|-..+..-.+. ++.+.|..+|+...+. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 2335666677777777777777777765432 222333222222233 3477888888877764 3
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP--SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQS 531 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 531 (648)
+-+...+...+.-....|+.+.|..+|+..... ...| ....|...++.-.+.|+.+.+.++.+++. ..|+......
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 334444556666556677888888888877644 1111 25667777777777788888888777765 2233333333
Q ss_pred HHHHH
Q 006364 532 LLGAC 536 (648)
Q Consensus 532 l~~~~ 536 (648)
+..-|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=108.00 Aligned_cols=303 Identities=7% Similarity=0.002 Sum_probs=215.9
Q ss_pred CCCChhhHHHHHHHH--hcCCchHHHHHHHHHHHHh--cCCCCchh--HHHHHHHH--HhcCChHHHH---------HHH
Q 006364 251 VCPNDVTFIGLIHAI--SIGNLVKEGRMIHGLCIKT--NFLSEPSV--CNCLITMY--ARFESMQDSE---------KVF 313 (648)
Q Consensus 251 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~~~li~~~--~~~g~~~~a~---------~~~ 313 (648)
+.|+...-+.+-..| ...++++.|..+.+++.+. .+..|..+ |-.|+..- .-.+....+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 455555555666666 7899999999999998764 23334333 33333321 1112222222 444
Q ss_pred hhcCC---C-C-c---ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCC----HHHHHHHHHHhccCchhhHHHHHHH
Q 006364 314 DELSC---R-E-I---ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPN----AYTFGSVLNAVGAAEDISLKHGQRC 379 (648)
Q Consensus 314 ~~~~~---~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~a~~~~~~~~~~~a~~~ 379 (648)
+.+.. + + . ..|......+...|++++|+..|++... ...++ ..++..+...+...| +.+.|...
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~ 163 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYH 163 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHH
Confidence 44432 1 1 1 1223344556789999999999999887 22343 346777888888999 99999999
Q ss_pred HHHHHHhCC-----C-CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHH
Q 006364 380 HSHIIKVGL-----D-SDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVMN 444 (648)
Q Consensus 380 ~~~~~~~~~-----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 444 (648)
+....+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+.
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 988775321 1 1245778899999999999999999987653 22 3478889999999999999999
Q ss_pred HHHHHHHC----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC-hHHHHHHHHHHhhcCC---HHHHH
Q 006364 445 QFKEMENK----GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS-PDHYSCMVDMLGRVGR---LEEAE 514 (648)
Q Consensus 445 ~~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~ 514 (648)
.|++..+. +.+....++..+...+.+.|++++|...+++..+...- .|. ...+..+...+...|+ +++|.
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99998871 22223677888899999999999999999998765332 233 5567778888888888 99999
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 515 ELVGQIPGGPG-LSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 515 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
..+++....|+ ...+..+...+...|+++.|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99998664433 345677888999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-10 Score=117.88 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=143.3
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788899999999999999999997653 3678999999999999999999999999988 4565 678999999
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. .+.+...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999754 787 8899999999999999999999999865 3456788999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 006364 544 MGERIADALMKMEP 557 (648)
Q Consensus 544 ~a~~~~~~~~~~~p 557 (648)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=97.96 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=98.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+...|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3445566666666666543 2233 234455666677777777777777777644 565 77777777777788888
Q ss_pred HHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 511 EEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERI-ADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 511 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
++|...+++.. .+.++.+|..+...+...|+.++|.+. ++++++++|.++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88877777654 334567788888888888888765554 689999999999999999999888875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-09 Score=98.80 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S---EFAWTAIISALARHGDYESVMNQFKEMENKGV-RPD-SITFL 462 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 462 (648)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666667777777777777776653 2 2 44566677777777777777777777766321 112 23455
Q ss_pred HHHHHhcc--------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 006364 463 SVLTVCGR--------NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLL 533 (648)
Q Consensus 463 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 533 (648)
.+..++.. .|++++|+..|+...+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 77777777777777655 343 22222221111111111 11246678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCcHHHHHHHHHHhh
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEK----------GDWEMVAILRKGMKS 588 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~ 588 (648)
..+...|+++.|...++++++..|++ +..+..++.+|... |++++|...++++.+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 88999999999999999999999985 45899999999977 899999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=102.84 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhCCChHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE----------K-SEFAWTAIISALARHGDYES 441 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~ 441 (648)
.+++..++........+....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 344444443333223334566788899999999999999998886542 1 34578888899999999999
Q ss_pred HHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcC
Q 006364 442 VMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY-----HIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 442 A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~l~~~~~~~g 508 (648)
|+..|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +-.|. ...+..+..+|.+.|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999988763 11232 4677788888889999999999998886531 11343 667888889999999
Q ss_pred CHHHHHHHHhhCC----------CCC-CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 509 RLEEAEELVGQIP----------GGP-GLSVLQSLLGACRIHGNV------EMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 509 ~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
++++|...+++.. ..+ ....|..+.......+.. ..+...++......|..+..+..++.+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999998887654 112 222333333333333322 22222222222233555678999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+++++..+
T Consensus 264 ~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=104.39 Aligned_cols=198 Identities=7% Similarity=0.002 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~ 443 (648)
+++|...+... ...|...|++++|.+.|.+..+ .+ ..+|+.+...|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 3456777888888887775532 11 457888889999999999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHhccc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 006364 444 NQFKEMENKGVR-PD----SITFLSVLTVCGRN-GMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 444 ~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 513 (648)
..|++..+.... .+ ..++..+...|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999887752111 11 35778888888886 9999999999988754211111 45688889999999999999
Q ss_pred HHHHhhCC-CC---CCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCcH
Q 006364 514 EELVGQIP-GG---PGL-----SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS-----YVLMSNLYA--EKGDWE 577 (648)
Q Consensus 514 ~~~~~~~~-~~---~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~ 577 (648)
...+++.. .. +.. ..|..++.++...|+++.|...+++++++.|..+.. +..++..|. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998754 12 221 256777888899999999999999999999876543 445566664 456788
Q ss_pred HHHHHHHH
Q 006364 578 MVAILRKG 585 (648)
Q Consensus 578 ~a~~~~~~ 585 (648)
+|.+.+++
T Consensus 258 ~A~~~~~~ 265 (292)
T 1qqe_A 258 EHCKEFDN 265 (292)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 88877743
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=93.21 Aligned_cols=180 Identities=10% Similarity=0.006 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE--KS----EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----ITF 461 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 461 (648)
+..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566777888888888888887653 32 246777778888888888888888888774 3332 133
Q ss_pred HHHHHHhcc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC
Q 006364 462 LSVLTVCGR------------------NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG 522 (648)
Q Consensus 462 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 522 (648)
..+..++.. .|++++|+..|+.+.+. .|+ ...+...... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence 333444432 46777777777777644 444 2222211110 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456778899999999999999999999886 5799999999999999999999998887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-09 Score=85.81 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH 539 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 539 (648)
.+...+...|++++|..+++.+.+. .| +...+..++..+...|++++|...++++. .+.+...|..+...+...
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3334444444445555444444332 22 24444445555555555555555554432 223455566666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|+++.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777777777777888888888888888887776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-08 Score=98.52 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=151.2
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhcCChHHHHHHHhhcCC-----CCc----ccHHHHHHH
Q 006364 264 AISIGNLVKEGRMIHGLCIKTNFLSEPS----VCNCLITMYARFESMQDSEKVFDELSC-----REI----ISWNALISG 330 (648)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~ 330 (648)
.+...|+++.|...+.......-..+.. +++.+...|...|++++|...+++... .+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445677777777766665543111111 234444555556666666665554321 111 123334444
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--C-chhHHHHHHHHHhhcCC
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--S-DPIVGSALLDMYGKRGS 407 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 407 (648)
+...|++++|...+++... ...+.+.. | ....+..+...|...|+
T Consensus 103 ~~~~G~~~~A~~~~~~al~--------------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQ--------------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHH--------------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 5555555555555544432 00011111 1 22344556667777788
Q ss_pred HHHHHHHHhhcCC--C------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHhcccCc
Q 006364 408 IFESQRVFNETQE--K------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFL-----SVLTVCGRNGM 473 (648)
Q Consensus 408 ~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~ 473 (648)
+++|...+++... + ...+|..+...+...|++++|...+++.....-.++ ...+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 8888777765431 1 124567777888888888888888888765311211 11121 22234668899
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC----C---CCCH-HHHHHHHHHHHHcCCHH
Q 006364 474 IHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP----G---GPGL-SVLQSLLGACRIHGNVE 543 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~---~~~~-~~~~~l~~~~~~~g~~~ 543 (648)
+++|...++.......-.+. ...+..+...+...|++++|...+++.. . .++. .++..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 99999988887543111111 2346677888888999999988887653 1 1122 25566677888899999
Q ss_pred HHHHHHHHHHhcCC
Q 006364 544 MGERIADALMKMEP 557 (648)
Q Consensus 544 ~a~~~~~~~~~~~p 557 (648)
.|...++++.++.+
T Consensus 311 ~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 311 DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-09 Score=114.73 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=106.6
Q ss_pred hhcCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcc
Q 006364 403 GKRGSIFESQRVFNETQ-----------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGR 470 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 470 (648)
...|++++|.+.++... ..+...|..+...|.+.|++++|+..|++..+. .| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666777776666554 224556666666777777777777777776663 33 34566666666667
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++ .+.+++.. .+.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766543 554 6666667777777777776 66666543 33455666667777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.++++++++|.++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=94.90 Aligned_cols=204 Identities=8% Similarity=-0.000 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C----Ch
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--K----SE 423 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~ 423 (648)
+.+...+......+...| ++++|...+..+.+..... ....+..+..+|.+.|++++|...|+...+ | ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 445677777788888899 9999999999999865322 156788899999999999999999998764 3 13
Q ss_pred hHHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 424 FAWTAIISALAR--------HGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 424 ~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
.++..+..++.. .|++++|+..|++..+. .|+. .....+ ..+...... -.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~ 148 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HH
Confidence 467778888888 99999999999999884 3443 222111 111111100 01
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP-GGP----GLSVLQSLLGACRIH----------GNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 559 (648)
..+..+...|.+.|++++|...++++. ..| ....+..+..++... |++++|...++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 235567778888888888888887654 122 245677777777765 88999999999999999998
Q ss_pred ch---hHHHHHHHHHhcCCcHH
Q 006364 560 SG---SYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 560 ~~---~~~~l~~~~~~~g~~~~ 578 (648)
+. .+..+..++...|++++
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhh
Confidence 64 45566666666555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=90.93 Aligned_cols=121 Identities=5% Similarity=-0.063 Sum_probs=102.7
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG 540 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 540 (648)
|...+...|++++|+..+.... ...|+ ...+..+..+|.+.|++++|.+.+++.. .+.++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455678899999999999875 44665 6667788999999999999999999875 4567889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH-HHHHh
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL-RKGMK 587 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 587 (648)
+++.|...++++++++|.++.+|..++.+|.+.|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 46554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=82.88 Aligned_cols=130 Identities=13% Similarity=0.235 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46677778888888888888888887642 335667777777788888888888888888654 343 6777888888
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++.+..|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888887764 3345777888888888999999999999998888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=96.13 Aligned_cols=173 Identities=7% Similarity=-0.034 Sum_probs=137.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 409 FESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444455444445566777888888999999999999998874 45 4567888888999999999999999988644
Q ss_pred cCCCCChHH-HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chh
Q 006364 488 YHIEPSPDH-YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--SGS 562 (648)
Q Consensus 488 ~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 562 (648)
.|+... .......+.+.++.++|...+++.. .+.+...+..+...+...|++++|...++++++.+|++ +..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 666333 3333344677788888888887765 45678889999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 563 YVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+..++.+|...|+.++|...+++-
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999998877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-08 Score=90.32 Aligned_cols=241 Identities=9% Similarity=0.003 Sum_probs=149.9
Q ss_pred HHhcCChHHHHHHHhhcCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 300 YARFESMQDSEKVFDELSCREII-SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
..-.|.+..++.-...+...+.. .-.-+.++|...|++.... ...|....+..+..-+ . + + +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~-~--~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-D-T--K---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-T-T--T---CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-c-c--c---HHH
Confidence 34456776666655554432222 1222335666666554210 1223332332222222 1 1 1 344
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-----SEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
.++.....+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 455444443 344555567788888889999999988876432 455777788888999999999999999877
Q ss_pred CCC-----CHHHHHHHHHHh--cc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC--
Q 006364 454 VRP-----DSITFLSVLTVC--GR--NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPG-- 522 (648)
Q Consensus 454 ~~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 522 (648)
..| +..+...+..++ .. .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 466 355555666553 22 33888899999988654 45533333444478888999999888875432
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 523 ----------GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 523 ----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
+.++.++..++......|+ .|.++++++.+..|++|.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 3356666666666666776 78888889988888887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-09 Score=88.28 Aligned_cols=100 Identities=8% Similarity=-0.036 Sum_probs=89.0
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 55675 7778888899999999999999998765 45578889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999987754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-09 Score=87.29 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=91.4
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.++..|..+..++...|++++|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 66776 7788888999999999999999998876 45678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-09 Score=99.77 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=158.1
Q ss_pred HhcCCcHHHHHHHHHhHh--------CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh------CC-CCchhHHH
Q 006364 332 AQNGLSLAAVQAFFGVIK--------ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV------GL-DSDPIVGS 396 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~--------~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~ 396 (648)
...|++++|+..|++... ..+....++..+...+...| +++.|...+..+.+. +- +....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346777777777777655 11234567788888899999 999999999998865 22 23456788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-H
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQE-------K----SEFAWTAIISALARHGDYESVMNQFKEMENK------GVRPD-S 458 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~ 458 (648)
.+...|...|++++|.+.|.+..+ + ...+|..+...|...|++++|+..|++..+. +-.|+ .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999987642 1 3557888999999999999999999998874 11333 4
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHhhcC------CHHHHHHHHhhCCCC-C
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDY------HIEPS-PDHYSCMVDMLGRVG------RLEEAEELVGQIPGG-P 524 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~ 524 (648)
.++..+...+...|++++|..+++++.+.. ...|. ...|..+...+...+ .+.++...++..... |
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678888899999999999999999987531 12333 344444444444333 344555555555422 2
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 525 -GLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 525 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
...++..+...+...|++++|...++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999998865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-07 Score=85.63 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=130.5
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHhH
Q 006364 411 SQRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG----MIHKGRHLFDSML 485 (648)
Q Consensus 411 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 485 (648)
|.+.|.... ..++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2466677777777878888888888888887765 45666666666776 6 8889999888885
Q ss_pred HhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 006364 486 KDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPG----LSVLQSLLGACRI----HGNVEMGERIADALM 553 (648)
Q Consensus 486 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 553 (648)
+. -+...+..|...|.. .+++++|..++++.....+ +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 43 246677778888877 7889999999888664433 7788888888888 788999999999998
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CcHHHHHHHHHHhhCCC
Q 006364 554 KMEPAGSGSYVLMSNLYAEK-G-----DWEMVAILRKGMKSKGV 591 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 591 (648)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 67778899999998764 3 89999999988776653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-07 Score=88.09 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=136.0
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 411 SQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 411 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
|...|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677776553 456666788899999999999999999987765423 456777888999999999999999999975
Q ss_pred hcCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 006364 487 DYHIEP-----SPDHYSCMVDM--LGRVG--RLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMGERIADALMKM- 555 (648)
Q Consensus 487 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 555 (648)
. .| +..+...|+.+ ....| ++++|..+|+++... |+...-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 67 34555555555 33334 999999999998644 55333344555888999999999999988876
Q ss_pred ---------CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 556 ---------EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 556 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+|+++.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888897 889999988863
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=105.75 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=126.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHH
Q 006364 405 RGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 35778999999999999999999999999884 44 467888899999999999999999
Q ss_pred HHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 006364 481 FDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNVEMGERIADALMK 554 (648)
Q Consensus 481 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 554 (648)
|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999865 676 8899999999999999999999998865 345678899999999999 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 006364 555 MEPAGSGSYVLMS 567 (648)
Q Consensus 555 ~~p~~~~~~~~l~ 567 (648)
.+|.+...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999988877
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-08 Score=82.34 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=53.5
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+.|+ ...+......|.+.|++++|++.|++.. .+.+..+|..+..++...|+++.|...++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 4445555555555555555555555433 233445555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCcHHHHHHHHHHh
Q 006364 567 SNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+.+|...|++++|.+.+++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-08 Score=94.06 Aligned_cols=171 Identities=8% Similarity=0.006 Sum_probs=137.9
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
++++|...|+.. ...|...|++++|+..|++..+. |-.++ ..+|+.+..+|...|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 588888887664 56788999999999999988763 32222 468889999999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHhhc-CCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 006364 482 DSMLKDYHIEPS----PDHYSCMVDMLGRV-GRLEEAEELVGQIP-G---GPG----LSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 482 ~~m~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
++..+-+.-..+ ..++..+..+|... |++++|+..+++.. . ..+ ..++..+...+...|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988754211111 46788999999996 99999999998764 1 111 35688899999999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 549 ADALMKMEPAGSG-------SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 549 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++++.++.|.+.. .|..++.+|...|++++|...+++..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999987654 578899999999999999999986553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=87.34 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=88.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-Hhh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM-LGR 506 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~ 506 (648)
+...+...|++++|+..|++..+. .| +...+..+...+...|++++|+..|+...+. .|+...+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 334444455555555555544331 22 2344444445555555555555555554332 2222211111111 111
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHH
Q 006364 507 VGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 507 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+...+|...+++.. .+.+...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122223455554433 23357778888888888888888999998888888764 55888899999999999888888
Q ss_pred HHHHh
Q 006364 583 RKGMK 587 (648)
Q Consensus 583 ~~~m~ 587 (648)
+++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=79.70 Aligned_cols=114 Identities=10% Similarity=0.057 Sum_probs=94.9
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+. ..+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|+..+++.. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44553 45667777888888888888888888754 665 7888888889999999999998888765 45567889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
..+..++...|++++|...++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999988887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=108.44 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=132.0
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 434 ARHGDYESVMNQFKEME--------NKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
...|++++|++.|++.. +. -+.+...+..+..++...|++++|+..|+++.+. .|+ ...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHH
Confidence 77899999999999998 32 2334577888888999999999999999999865 676 88999999999
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+.|++++|.+.|++.. .+.+...|..+..++...|++++ +..++++++++|.++..|..++.+|...|++++|.+.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999865 34467789999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHh
Q 006364 583 RKGMK 587 (648)
Q Consensus 583 ~~~m~ 587 (648)
+++..
T Consensus 557 ~~~al 561 (681)
T 2pzi_A 557 LDEVP 561 (681)
T ss_dssp HHTSC
T ss_pred HHhhc
Confidence 97554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.7e-08 Score=101.81 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+.++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 4 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555554432 22344555555555566666666666554432 2344555555556666666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc---CCHHHHHHHHhhC
Q 006364 449 MENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---GRLEEAEELVGQI 520 (648)
Q Consensus 449 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 520 (648)
..+.. +.+...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |++++|.+.+++.
T Consensus 83 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55531 122445555555555566666666666555433 343 45555555555555 5566665555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=91.04 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=148.5
Q ss_pred cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 334 NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA-AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.|++++|.+++++..+..+.. +.. .+ +++.+...+... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~--~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKP--DYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSC--CHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCC--CHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 345666666666655411111 111 23 566666555443 45667778888888
Q ss_pred HHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcccCcHHHHH
Q 006364 413 RVFNETQE-----KS----EFAWTAIISALARHGDYESVMNQFKEMENKGV---RPD--SITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 413 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~ 478 (648)
..|....+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 87775542 11 34788888999999999999999998765211 122 3567788888888 9999999
Q ss_pred HHHHHhHHhcCCC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHH
Q 006364 479 HLFDSMLKDYHIE---PS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GPG----LSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 479 ~~~~~m~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~ 546 (648)
..|++..+.+.-. +. ..++..+...|.+.|++++|...+++... .++ ...+..++..+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999886542111 11 56788899999999999999999987641 121 235666677778889999999
Q ss_pred HHHHHHHhcCCCCchh-----HHHHHHHHHhcCCcHHHHHH
Q 006364 547 RIADALMKMEPAGSGS-----YVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 582 (648)
..+++++ +.|..... ...++..+ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 88875433 44555555 56776666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=85.65 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=113.9
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCC---ChhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-CH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEK---SEFAWTA----------------IISALARHGDYESVMNQFKEMENKGVRP-DS 458 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 458 (648)
...+...|++++|...|+...+. +...|.. +..+|.+.|++++|+..|++..+. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 33455667777777777665432 2334444 888899999999999999999884 45 46
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC--HHHHHHHHhhCCCC-CCHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR--LEEAEELVGQIPGG-PGLSVLQSLLG 534 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~l~~ 534 (648)
..+..+..++...|++++|+..|++..+. .|+ ...|..+...|...|. .+.+...++..... |....+..+..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 78888888999999999999999999755 776 8888888888876654 44556666665532 22234555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
++...|++++|...+++++++.|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7777899999999999999999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-07 Score=87.28 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=118.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKG-VRPDSI----TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSC 499 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 499 (648)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788888999999888887632 222221 2334666677788999999999988763222223 346888
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-------CC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-------GG-P-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYV 564 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 564 (648)
+...|...|++++|...++++. .. + ...++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999988887654 11 1 23477888999999999999999999999875432 56899
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHh
Q 006364 565 LMSNLYAEKGD-WEMVAILRKGMK 587 (648)
Q Consensus 565 ~l~~~~~~~g~-~~~a~~~~~~m~ 587 (648)
.++.+|...|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699998887664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-07 Score=84.07 Aligned_cols=122 Identities=9% Similarity=-0.017 Sum_probs=81.7
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG 540 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 540 (648)
.+...+...|++++|+..|++. +.|+...+..+...|.+.|++++|...+++.. .+.+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3344455566666666666544 24455566666666666666666666665543 2345566777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 541 NVEMGERIADALMKMEPAGS----------------GSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+++.|...++++++..|.+. ..+..++.+|...|++++|.+.+++..+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777777666 77888888888888888888888776654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-05 Score=82.71 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=134.4
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHH-HHHHh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES-QRVFN 416 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 416 (648)
+.+..+|+++....+-+...|...+.-+...| +.+.|..++...+.. +.+...+.. |+...+.++. ..+.+
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~--~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG--QKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 34667888877755556777777777777777 889999999998887 444433332 2221111111 11111
Q ss_pred hcC------------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCcHHHHHHHHHH
Q 006364 417 ETQ------------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC-GRNGMIHKGRHLFDS 483 (648)
Q Consensus 417 ~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~ 483 (648)
... ......|-..+....+.++.+.|..+|++. .. ..++...|......- ...++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 002245777777777788899999999998 32 123344443221111 123368999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 484 MLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 484 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 346 al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98874322 4556667888888999999999999985 3578899999888889999999988888774
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=83.59 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC-hh---H
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--KS-EF---A 425 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 425 (648)
+...+..+...+...| +.++|...+..+.+..... ....+..+..+|.+.|++++|...|+...+ |+ .. +
T Consensus 3 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445556667778888 9999999999999865432 245778889999999999999999998764 32 22 4
Q ss_pred HHHHHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 426 WTAIISALAR------------------HGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 426 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+..+..++.. .|+.++|+..|+++.+. .|+.. .+..... ...+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH--
Confidence 5555555554 57899999999999984 45542 2221110 00111111
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
......+...|.+.|++++|...++++. ..|+ ...+..+..++...|+.+.|...++.+....|.+..
T Consensus 147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1122356788899999999999988765 2233 256888899999999999999999999998888754
Q ss_pred h
Q 006364 562 S 562 (648)
Q Consensus 562 ~ 562 (648)
.
T Consensus 220 ~ 220 (225)
T 2yhc_A 220 H 220 (225)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-07 Score=83.87 Aligned_cols=157 Identities=12% Similarity=0.038 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLS----------------VLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
+-.....+...|++++|+..|++..+ ..|+ ...|.. +..++...|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33455677889999999999999987 3555 345556 788889999999999999999865
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCchhH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN--VEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
.|+ ...+..+..+|...|++++|...+++.. .+.+..+|..+...+...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 776 8899999999999999999999999875 45567889888888766654 34455566665433222 2356
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..++.++...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6778888889999999999987764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.1e-07 Score=85.36 Aligned_cols=163 Identities=11% Similarity=-0.017 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCCC--hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD-S----ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEPS--PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 495 (648)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|+..++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888999999999888777432211 1 2233455566788899999999988764311 1222 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Cc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPA------GS 560 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 560 (648)
+|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999887654 1122 257888999999999999999999999876532 15
Q ss_pred hhHHHHHHHHHhcCCcHHH-HHHHHHHh
Q 006364 561 GSYVLMSNLYAEKGDWEMV-AILRKGMK 587 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 587 (648)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77676543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=88.10 Aligned_cols=132 Identities=10% Similarity=-0.024 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSL 532 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 532 (648)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334566777888889999999999999999865 786 8889999999999999999999999987 34665544433
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 533 L-GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 533 ~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
. ..+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 34677888899999999999999999999999999999999999999999988763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-07 Score=89.99 Aligned_cols=194 Identities=6% Similarity=-0.038 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
++++|..++....+.... . .+...+++++|...|.. ....|...|++++|+..|.+..+
T Consensus 6 ~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888888877764221 1 12225788888888765 46778899999999999998876
Q ss_pred C----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 452 K----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 452 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
. |-.+. ..+|..+...|...|++++|+..|++..+.+.- .|. ..++..+..+|.+ |++++|+..+++..
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 3 11111 357888888999999999999999987654211 122 5678889999998 99999999998764
Q ss_pred ---C--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 522 ---G--GP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS------GSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 522 ---~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
. .+ ...++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 11 145788899999999999999999999999876543 367788889999999999999998765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=79.27 Aligned_cols=125 Identities=8% Similarity=-0.021 Sum_probs=92.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. .+.+...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555666667777777777766543 443 6667777777777777777777776644 344567788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCcHHHHHHHHHHh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNL--YAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 587 (648)
...|+++.|...++++++..|.++..+..+..+ +...|++++|.+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999998888554444 888899999999887664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-07 Score=74.39 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|.++++.+.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45556666666677777777777776544 343 5666777777777777777777776654 33466778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...|+++.|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999988888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=78.86 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=85.8
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|+++.|...++++++++|.++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 45665 6667777888889999999999988765 44577888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=75.73 Aligned_cols=116 Identities=5% Similarity=-0.054 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 534 (648)
...+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. .+.+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345556666667777777777777777644 343 6677777777777788888877776654 3345677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
.+...|+++.|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999988875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=76.29 Aligned_cols=114 Identities=7% Similarity=0.004 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|...|+...+ ..|+ ...+..+..++...|++++|...+++.. .+.+...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4445555555555556666655555542 2342 5555566666666666666666665543 23456677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
+...|+++.|...++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888889999999999999999988899999888887664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-07 Score=81.69 Aligned_cols=144 Identities=8% Similarity=-0.044 Sum_probs=79.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555555666666666655555555555555555555555555555555555431 223344555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGP-GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
+|++.|+...+...-.+... +...|. ...| ...+|..+..++...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555543211111000 000000 0111 236778888888899999999999999999
Q ss_pred cCCCC
Q 006364 555 MEPAG 559 (648)
Q Consensus 555 ~~p~~ 559 (648)
+.|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=79.26 Aligned_cols=174 Identities=10% Similarity=-0.047 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 006364 375 HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-SEFAWTAIISALARHG----DYESVMNQFKEM 449 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m 449 (648)
+|...+....+.| ++..+..|...|...+++++|.++|+...+. +..++..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455566666553 6777888888999999999999999977654 67788888888887 6 899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHh
Q 006364 450 ENKGVRPDSITFLSVLTVCGR----NGMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGR----VGRLEEAEELVG 518 (648)
Q Consensus 450 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 518 (648)
.+.| +...+..+...|.. .+++++|+.+|++..+. .|+ ...+..|...|.. .+++++|...++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 55677777777776 88999999999998643 553 7888889999988 889999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCC
Q 006364 519 QIPGG-PGLSVLQSLLGACRIH-G-----NVEMGERIADALMKMEPA 558 (648)
Q Consensus 519 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 558 (648)
+.... +++..+..|...+... | |.++|...++++.+.+..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 87533 5666777888877653 3 899999999999887644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-06 Score=80.17 Aligned_cols=201 Identities=15% Similarity=0.019 Sum_probs=141.0
Q ss_pred HHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHhhcCCHHHHHHHHhhcC
Q 006364 344 FFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIV---GSALLDMYGKRGSIFESQRVFNETQ 419 (648)
Q Consensus 344 ~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~ 419 (648)
+.++.. ...|+..++..+...+.-.- + .+.......+... +...+..+...|++++|.+.++...
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~----~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI----I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT----H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH----H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344444 44677777777776665432 1 1111111222222 2334677889999999999999865
Q ss_pred CC-----C----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 420 EK-----S----EFAWTAIISALARHGDYESVMNQFKEMENKGVR-PD----SITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 420 ~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
+. + ...+..+...+...|++++|+..|++....... ++ ..+++.+..+|...|++++|..+|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 1 113344667777788999999999999884322 33 2368889999999999999999999987
Q ss_pred Hhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 006364 486 KDY----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGPG-LSVLQSLLGACRIHGN-VEMGERIADA 551 (648)
Q Consensus 486 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~ 551 (648)
+.. +..|. ..+|..+...|.+.|++++|...+++.. ..+. ..+|..+..++...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 421 22233 5588899999999999999999987654 1122 6688899999999995 6999999999
Q ss_pred HHhc
Q 006364 552 LMKM 555 (648)
Q Consensus 552 ~~~~ 555 (648)
++++
T Consensus 263 Al~i 266 (293)
T 3u3w_A 263 ASFF 266 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.2e-06 Score=78.67 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH--HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC----
Q 006364 437 GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH--KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR---- 509 (648)
Q Consensus 437 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---- 509 (648)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. .|. ...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 45555555555555531 223444444444444444444 555555555533 332 4444444444444443
Q ss_pred --HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 510 --LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV-EMGERIADALMKME---PAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 510 --~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
++++++.++++. .+-|...|+-+...+...|+. +......+++.+++ |.++..+..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 555555555433 334555555555555555542 22334444444443 5555555566666666666666666
Q ss_pred HHHHHh
Q 006364 582 LRKGMK 587 (648)
Q Consensus 582 ~~~~m~ 587 (648)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=82.27 Aligned_cols=117 Identities=6% Similarity=0.064 Sum_probs=73.0
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH-HHHcCCH--
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA-CRIHGNV-- 542 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~-- 542 (648)
...|++++|...++...+. .|+ ...|..+...|...|++++|...+++.. .+.+...|..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4456666666666665543 343 5666666666666666666666666543 23345566666666 5566776
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.|...++++++.+|.++..+..++.+|...|++++|...+++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-07 Score=79.93 Aligned_cols=155 Identities=13% Similarity=0.036 Sum_probs=119.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV-CGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 470 (648)
...+...+.+.|++++|...|+...+ .+...|..+...+...|++++|+..|++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566778889999999999998875 36778999999999999999999999988763 3444332222111 112
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG---LSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~a 545 (648)
.+...+|+..++...+. .|+ ...+..+..++...|++++|...++++. ..|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233478888888754 776 8889999999999999999999998764 3343 56889999999999999999
Q ss_pred HHHHHHHHh
Q 006364 546 ERIADALMK 554 (648)
Q Consensus 546 ~~~~~~~~~ 554 (648)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=89.61 Aligned_cols=142 Identities=9% Similarity=0.014 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
+...|..+...|.+.|++++|+..|++..+. .|+...+ .. +.+.++ .|. ...|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~~--~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------Ch--HHHHHH----------HHHHHHHHHHH
Confidence 3445666666666677777777777666653 2222100 00 011000 111 4677778
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
..+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...++++++++|.++.++..++.++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 345678889999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 006364 579 V-AILRKGM 586 (648)
Q Consensus 579 a-~~~~~~m 586 (648)
+ ...++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 8 4455555
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=77.76 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=76.5
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+. ..+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...|++.. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34442 45566666777778888888888877644 665 7777778888888888888888877654 34456678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
..+..++...|++++|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-07 Score=74.17 Aligned_cols=95 Identities=4% Similarity=-0.087 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+...|..+..++...|++++|...++++++++|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4456667777777888888888777654 34467778888888888888888888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-07 Score=72.24 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA--GSGSYVLMSNL 569 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 569 (648)
...+..+...+.+.|++++|...+++.. .+.+...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566777778888888888888887654 3456778888888999999999999999999999999 99999999999
Q ss_pred HHhc-CCcHHHHHHHHHHhhCC
Q 006364 570 YAEK-GDWEMVAILRKGMKSKG 590 (648)
Q Consensus 570 ~~~~-g~~~~a~~~~~~m~~~~ 590 (648)
|... |++++|.+.+++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998876543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=89.36 Aligned_cols=187 Identities=5% Similarity=-0.118 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLT 466 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 466 (648)
+...+..+...+.+.|++++|...|+...+ .+...|..+..+|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345566777888888999999999887652 36778888999999999999999999988874 44 4577888888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH---HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD---MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 542 (648)
++...|++++|...|+...+. .|+ ...+...+. ...+...+.. ......+++..+...+.. + ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 899999999999999887654 332 111111111 2222222222 222233344444444433 2 26889
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 588 (648)
+.|.+.++++.+.+|++......+..++.+. +++++|.+++.+..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999888888888888877 778999999987765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.53 E-value=8.4e-05 Score=76.22 Aligned_cols=200 Identities=7% Similarity=-0.051 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH-HHHhhc
Q 006364 238 DAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSE-KVFDEL 316 (648)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~ 316 (648)
.+..+|++.... .+.+...|...+.-+...|+++.|..+++..+.. +.+...+. .|+...+.++.. .+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 456677777664 2334556666666677788888888888888877 44433332 233222211111 111111
Q ss_pred C--C-------C---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH--HHHHhccCchhhHHHHHHHHHH
Q 006364 317 S--C-------R---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS--VLNAVGAAEDISLKHGQRCHSH 382 (648)
Q Consensus 317 ~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~--ll~a~~~~~~~~~~~a~~~~~~ 382 (648)
. . + ....|...+....+.++.+.|..+|.+. .....+...|.. .+.... .+ +.+.|..+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~--d~~~ar~ife~ 345 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TG--SRATPYNIFSS 345 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HC--CSHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CC--ChHHHHHHHHH
Confidence 0 0 0 0123444444444555566666666666 311122222321 111111 11 35566666666
Q ss_pred HHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006364 383 IIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEME 450 (648)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (648)
..+.- +.++..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+..+++++.
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55542 2223334445555555566666666666553 234445555554445555555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.6e-05 Score=70.66 Aligned_cols=160 Identities=10% Similarity=0.090 Sum_probs=126.5
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc------H
Q 006364 406 GSIFESQRVFNETQE---KSEFAWTAIISALARHGDYE--SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM------I 474 (648)
Q Consensus 406 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 474 (648)
+++++++++++.+.+ ++..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 678888888887764 47778888888888888888 9999999999864 3355667665555556665 8
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEE-AEELVGQIPG-----GPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
+++++.++.++.. .|+ ...|+.+..++.+.|+..+ +..+.+++.. ..++..+..+...+...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999865 776 8889999999999888544 5567776542 3577889999999999999999999
Q ss_pred HHHHHHh-cCCCCchhHHHHHHH
Q 006364 548 IADALMK-MEPAGSGSYVLMSNL 569 (648)
Q Consensus 548 ~~~~~~~-~~p~~~~~~~~l~~~ 569 (648)
+++.+.+ .+|.....|...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 799988777765543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-07 Score=77.98 Aligned_cols=110 Identities=8% Similarity=-0.052 Sum_probs=85.0
Q ss_pred CCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+ ...+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|...+++.. .+.++..|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3443 345566677778888888888888887654 564 7778888888888888888888888764 34466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
..+..++...|++++|...+++++++.|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 8888899999999999999999999999887664433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=73.20 Aligned_cols=93 Identities=6% Similarity=-0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
.+..+...+.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566778888999999999988765 4457888999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhh
Q 006364 574 GDWEMVAILRKGMKS 588 (648)
Q Consensus 574 g~~~~a~~~~~~m~~ 588 (648)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-06 Score=68.55 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666666655433 332 5555555666666666666666555443 223455666666777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
...|+++.|...++++.+..|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777766666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=76.70 Aligned_cols=128 Identities=8% Similarity=0.095 Sum_probs=99.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH-HhhcCCH-
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM-LGRVGRL- 510 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~-~~~~g~~- 510 (648)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .|+ ...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35678888888888887742 345678888888889999999999999988755 454 7778888888 7788998
Q ss_pred -HHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 511 -EEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 511 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
++|...+++.. .+.+...|..+...+...|+++.|...++++++..|+++.....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99999988765 34457788889999999999999999999999999988765433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=71.76 Aligned_cols=96 Identities=8% Similarity=-0.081 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+...+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 36677777777778888888887777654 3445677888888888888888888888888888888888888889999
Q ss_pred HhcCCcHHHHHHHHHHhh
Q 006364 571 AEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 571 ~~~g~~~~a~~~~~~m~~ 588 (648)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888999888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.1e-06 Score=78.35 Aligned_cols=162 Identities=15% Similarity=0.015 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQE--K-SE------FAWTAIISALARHGDYESVMNQFKEMENKGV---RPD--SI 459 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 459 (648)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999999875432 1 11 2344566677888999999999999886321 122 34
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC-CH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP-GL 526 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 526 (648)
+++.+...|...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|...+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732222232 2588899999999999999999988754 111 25
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 006364 527 SVLQSLLGACRIHGNVEMG-ERIADALMKM 555 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 555 (648)
.+|..+...+...|+.+.| ...++++.++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7878887754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-06 Score=75.81 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=37.1
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHH
Q 006364 404 KRGSIFESQR---VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 404 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 475 (648)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 333322223445555555555555666665555555431 11111 233444444445555555
Q ss_pred HHHHHHHHhH
Q 006364 476 KGRHLFDSML 485 (648)
Q Consensus 476 ~a~~~~~~m~ 485 (648)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-06 Score=70.37 Aligned_cols=110 Identities=11% Similarity=-0.063 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+......+...|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34455555666677777777777766544 454 6667777777777777777777776654 33456677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALMKME------PAGSGSYVLMSNLYA 571 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 571 (648)
+...|++++|...++++++++ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888888888888888888888 777777776666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=73.46 Aligned_cols=109 Identities=8% Similarity=-0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|...+++.. .+.++..|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34455566677788888888888877654 564 7777778888888888888888887754 34456677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+...|+++.|...+++++++.|.++........+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 89999999999999999999998877765554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=73.78 Aligned_cols=109 Identities=15% Similarity=-0.020 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 534 (648)
...+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666667777778888888888777654 554 7777888888888888888888887754 3445778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
++...|+++.|...++++++++|+++..|...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998876655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=74.61 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|...++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788889999999999999999999865 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-06 Score=70.21 Aligned_cols=112 Identities=10% Similarity=0.001 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQS 531 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 531 (648)
...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|...+++.. .+.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444555555555566666665555542 2444 4555556666666666666666665543 2335666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
+..++...|+++.|...+++++++.|.++..+..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77778888888888888888888888887777777666544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=72.14 Aligned_cols=93 Identities=4% Similarity=-0.033 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hHHH
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-------SYVL 565 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 565 (648)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..+++++++.|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345556666666666666666666543 3344566666777777777777777777777776665532 5666
Q ss_pred HHHHHHhcCCcHHHHHHHHHHh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++.+|...|++++|.+.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777777777777776544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-06 Score=69.21 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999998865 34567889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006364 572 EKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999987653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=77.00 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=87.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH---hcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK---DYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
...|++++|.++++..... ......++..+...+...|++++|...+++..+ ..+..|. ...+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444321 112345566666666777777777777766654 1123333 5566667777777777
Q ss_pred HHHHHHHHhhCC----CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----chhHHHHHHHHHhcC
Q 006364 510 LEEAEELVGQIP----GGP-G----LSVLQSLLGACRIHGNVEMGERIADALMKMEP--AG----SGSYVLMSNLYAEKG 574 (648)
Q Consensus 510 ~~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g 574 (648)
+++|...+++.. ..+ + ..++..+...+...|++++|...++++++..+ .+ ...+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 777776665533 011 1 23455666667777777777777777665432 11 123566777777777
Q ss_pred CcHHHHHHHHHHh
Q 006364 575 DWEMVAILRKGMK 587 (648)
Q Consensus 575 ~~~~a~~~~~~m~ 587 (648)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777776666543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-06 Score=68.05 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
....+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35677888999999999999999999865 3457888999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHhhC
Q 006364 571 AEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 571 ~~~g~~~~a~~~~~~m~~~ 589 (648)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999887653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=76.40 Aligned_cols=168 Identities=9% Similarity=-0.006 Sum_probs=101.9
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
+......|.++++.+.|+...+. ....|..+...+...|++++|+..|++.... .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444456666666666543321 3456677777777888888888888887763 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.-. .. .....|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 013566677777888888888888777654 34567788888899999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCcHHHH-HHHHHHh
Q 006364 554 KMEPAGSGSYVLMSNLYAEKGDWEMVA-ILRKGMK 587 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 587 (648)
++.|.++..+..++.++...|+.+++. ..+..|-
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888777766 4444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-06 Score=77.09 Aligned_cols=182 Identities=11% Similarity=-0.020 Sum_probs=124.2
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 006364 404 KRGSIFESQRVFNETQE--K-SEFAWTAI-------ISALARHGDYESVMNQFKEMENKGVRPDS--------------- 458 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 458 (648)
..++...|.+.|.+..+ | ..-.|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887653 2 44567766 4555555555666555554443 33332
Q ss_pred -------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----H
Q 006364 459 -------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGL----S 527 (648)
Q Consensus 459 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 527 (648)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123345566778888888888887753 3565336666677888888888888888866543432 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKME--PA-GSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
++..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|...++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67777888888888888888888887433 33 44577888888888888888888888887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-06 Score=69.57 Aligned_cols=112 Identities=7% Similarity=-0.072 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
.+...+..+...+...|++++|...|+...+. .|+ ...|..+..++...|++++|...+++.. .+.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566667777777777777777777777654 454 6677777777888888888877777654 34456778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPA-----GSGSYVLMSNLY 570 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 570 (648)
..++...|+++.|...+++++++.|+ +......+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888888999999999998888877 455555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=69.23 Aligned_cols=95 Identities=6% Similarity=-0.033 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 7788999999999999999999998864 33478889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=69.43 Aligned_cols=127 Identities=7% Similarity=-0.066 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777778888888888888877642 234667777777788888888888888887654 454 677778888
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQS--LLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
++.+.|++++|...+++.. .+.+...+.. ++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887654 2334444433 33346677888888888777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=88.31 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=97.1
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566788899999999888755 676 8888889999999999999999888764 34567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCcHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNL--YAEKGDWEMVAILRKG 585 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 585 (648)
+++|.+.+++++++.|.++..+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999988 8889999999998873
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.9e-06 Score=76.41 Aligned_cols=138 Identities=13% Similarity=0.054 Sum_probs=100.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~ 503 (648)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777788888888888777653 355444445555778888999999988755321 1 121 3467778888
Q ss_pred HhhcCCHHHHHHHHhhCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGG---P--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
+.+.|++++|+..+++.... | ....+.....++...|+.++|...++++...+|. +..+..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999998876422 3 3346777888899999999999999999999998 766665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-06 Score=66.95 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 6778888999999999999999998865 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006364 572 EKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|.+.+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-06 Score=84.01 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+... .. .|. ...|..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~------~~~~~~~~~nla 324 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----AS------ESFLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HH------HHHHHHHHHHHH
Confidence 446777777777888888888888777662 2221100 0 00000 00 111 45777888
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 579 (648)
.+|.+.|++++|+..+++.. .+.+...|..+..++...|+++.|...++++++++|.+..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888889988888888765 3456788999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhh
Q 006364 580 AI-LRKGMKS 588 (648)
Q Consensus 580 ~~-~~~~m~~ 588 (648)
.+ .++.|-.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 64 4555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.9e-06 Score=67.93 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+...+..+...+.+.|++++|...+++.. ..|+ ...|..+...+...|+++.|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 37888899999999999999999998865 4566 678888999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHhh
Q 006364 568 NLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=78.49 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S---------------EFAWTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999987653 2 2 356666666666666666666666666653
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
. +.+...+..+..++...|++++|+..|+++.+. .|+ ...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 223455556666666666666666666666533 444 45555555555555555555
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-06 Score=76.25 Aligned_cols=119 Identities=8% Similarity=0.084 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CCh----------------hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSE----------------FAWTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
...+..+...+.+.|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44567788889999999999999997653 222 56666777777777777777777776663
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
-+.+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++...++.+++.
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556666666667777777777777766543 454 555666666665555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-06 Score=66.40 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=63.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACR 537 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 537 (648)
+..+...+...|++++|+..|+...+. .|+ ...|..+..++.+.|++++|+..+++.. .+.+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334445566677777777777777644 564 6677777777777777777777776654 3345667777777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCc
Q 006364 538 IHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
..|++++|...++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.1e-06 Score=70.73 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 456777888888889999999999999999999999999999999999999999888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-06 Score=67.63 Aligned_cols=95 Identities=5% Similarity=0.056 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG-------SGSYV 564 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 564 (648)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|+++.|...++++.+..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456667777777788888877777654 34466777888888888888888888888888887766 77888
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999987765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00099 Score=63.75 Aligned_cols=171 Identities=8% Similarity=0.002 Sum_probs=82.9
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-C-CHHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR-G-SIFE 410 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 410 (648)
..+..++|++++.++..-.+-+...|+.--..+...+. .++++...+..+..... -+..+++.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 33444566666666655333344444443333333330 24555555555554332 2333333333333333 4 5566
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc------
Q 006364 411 SQRVFNETQEK---SEFAWTAIISALARHGDYE--------SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM------ 473 (648)
Q Consensus 411 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 473 (648)
++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666666543 4445555444444444444 6666666666642 2244555554444444443
Q ss_pred -HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 474 -IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 474 -~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
++++++++++++.. .|+ ...|+.+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 55666666665533 454 5555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.8e-06 Score=68.39 Aligned_cols=62 Identities=10% Similarity=-0.103 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKM-------EPAGSGSY----VLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..|..+..++...|++++|...+++++++ +|+++..| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 89988888 8999999999999999998887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-05 Score=79.03 Aligned_cols=187 Identities=8% Similarity=-0.053 Sum_probs=135.1
Q ss_pred HHhhcCCHHHHHHHHhhcCCC-----C---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH-
Q 006364 401 MYGKRGSIFESQRVFNETQEK-----S---------------EFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDS- 458 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~- 458 (648)
.+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345667888888888765421 1 124677889999999999999999887652 112222
Q ss_pred ---HHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC
Q 006364 459 ---ITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP 524 (648)
Q Consensus 459 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~ 524 (648)
...+.+-..+...|+++++..+++..... .+..+. ...+..++..|...|++++|..++++.. .++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22333444456778999999998877532 233444 6788899999999999999999887643 122
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 525 -GLSVLQSLLGACRIHGNVEMGERIADALMKMEP---AG----SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 525 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...++..++..|...|+++.|..+++++....+ .+ ...+..++.++...|+|++|...+.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 245788888999999999999999999887542 22 2467788888999999999988776653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.9e-06 Score=63.98 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=61.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC--CHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGP--GLSVLQSLLG 534 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~ 534 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+.+.|++++|...+++.. .+. +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444555555666666666666665543 333 5556666666666666666666666543 122 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcCCCCc
Q 006364 535 ACRIH-GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 535 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+... |++++|.+.++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777778888777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.6e-06 Score=66.20 Aligned_cols=109 Identities=5% Similarity=-0.071 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCC----HHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-----GGPG----LSVL 529 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~ 529 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. ..++ ..+|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3444444555555555555555555433 232 4555555556666666666665555443 1112 5567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
..+...+...|+++.|...++++.+..| ++.....+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777888888888888888888888877 56666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-05 Score=62.56 Aligned_cols=104 Identities=8% Similarity=0.057 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
+|..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.++..++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 3444555555555555555555555542 222 344444555555555555555555544322 111 0000000
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
..+|..+..++...|+++.|.+.+++.++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666677777777777777777776553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=82.11 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=72.8
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc
Q 006364 398 LLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGM 473 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 473 (648)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+. .| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 33456667777777777775542 35667777777777777777777777777764 33 35666667777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH--HhhcCCHHHHHHHHh
Q 006364 474 IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM--LGRVGRLEEAEELVG 518 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 518 (648)
+++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777654 343 3444444444 666677777777766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=65.34 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+..+..++...|+++.|...++++++..|++ +..+..++.+|...|++++|...++++.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555555555555 4445555555555555555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=79.81 Aligned_cols=137 Identities=5% Similarity=-0.068 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
..|..+...+.+.|++++|+..|++..+. .|+.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 35666777777777777777777776651 11100 0000 11111 13444 678888999
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...+++++++.|.++..+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765 33467889999999999999999999999999999999999999999999988887775
Q ss_pred HH
Q 006364 581 IL 582 (648)
Q Consensus 581 ~~ 582 (648)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=68.39 Aligned_cols=212 Identities=12% Similarity=0.021 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhC-C-ChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARH-G-DYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~ 445 (648)
..+++..+...++..... +..+++.--..+...| .+++++++++.+.. ++..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 445677777777776532 4455666666667777 59999999998764 3667888877777776 7 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHH--------HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC-------
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIH--------KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR------- 509 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~------- 509 (648)
++++.+.. +-|...|+.-...+.+.|.++ +++++++++.+. .|. ...|+....++.+.++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99998753 335677766555555555555 899999999865 564 7888888888888886
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHHhc---C------CCCch
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEM-----------------GERIADALMKM---E------PAGSG 561 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~-----------------a~~~~~~~~~~---~------p~~~~ 561 (648)
++++++.++++. .+-|...|+-+-..+...|+... -..+.+.+.++ . +..+-
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 688988887765 55688899888888877765410 12233333332 1 35566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
....|+.+|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 788999999999999999999998853
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-05 Score=62.03 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h---HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P---DHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-G---LSVLQSLLG 534 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 534 (648)
+...+...|++++|...|+...+. .|+ . ..+..+..++.+.|++++|...+++.. ..| + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344455666777777777666554 233 2 456666677777777777777766543 112 2 556777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
++...|+++.|...++++++..|+++........+-
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 888888899999999998888888776655444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=68.87 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=67.50 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=65.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|...+++.. .+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777777532000244 6677777788888888888888877754 34456777888888888889999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 006364 548 IADALMKMEPAGSGSYV 564 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~ 564 (648)
.++++++..|.++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999888888876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-06 Score=80.01 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677777888888888889888888776 3454432 234455555443321 136778888
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCCcHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA-EKGDWEMV 579 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 579 (648)
+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...++++++++|.++.++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888764 34567788888899999999999999999999999999888888888844 45667777
Q ss_pred HHHHHHHhh
Q 006364 580 AILRKGMKS 588 (648)
Q Consensus 580 ~~~~~~m~~ 588 (648)
...+++|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=75.08 Aligned_cols=110 Identities=5% Similarity=-0.130 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLL 533 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 533 (648)
+...+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888889999999999999998765 674 8888999999999999999999998865 334677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
.++...|++++|...++++++++|+++..+...++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 999999999999999999999988775444433333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.2e-06 Score=70.29 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS-GSYVLMSNLY 570 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 570 (648)
...|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888888899999999988887765 445678889999999999999999999999999999987 5555555554
Q ss_pred H
Q 006364 571 A 571 (648)
Q Consensus 571 ~ 571 (648)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.001 Score=63.29 Aligned_cols=192 Identities=8% Similarity=-0.033 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC-hHHHHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG--SIFESQRVFNETQE---KSEFAWTAIISALARHGD-YESVMNQF 446 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 446 (648)
++++..++..+..... -+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4455555555555432 24444544444444555 36677777766553 355666666666666666 47777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccc--------------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc----
Q 006364 447 KEMENKGVRPDSITFLSVLTVCGRN--------------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---- 507 (648)
Q Consensus 447 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---- 507 (648)
+++.+.. +-|...|+.....+.+. +.+++++++++..... .|+ ...|+.+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 7777643 22344444433333222 4567777777776644 564 55665554444444
Q ss_pred -------CCHHHHHHHHhhCC-CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 508 -------GRLEEAEELVGQIP-GGPGLSVLQSLLGAC-----RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 508 -------g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+.++++++.++++. ..|+. .|..+..++ ...|..++....+.++.+++|...+-|..+..-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 34556666555543 23332 333222111 1245556666667777777776666665554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=68.53 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCch
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEP------AGSG 561 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 561 (648)
.+..+...+...|++++|.+.+++.. ..+ ...++..+...+...|++++|...++++++..+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444555555555554444322 001 133455666677777777777777777765432 1245
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678888888899999999888876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=81.42 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=91.1
Q ss_pred hcccCcHHHHHHHHHHhHHhcC--C---CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYH--I---EPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQS 531 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 531 (648)
+...|++++|+.++++..+... + .|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766553311 1 233 5667777888888888888877776543 2233 346788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCC
Q 006364 532 LLGACRIHGNVEMGERIADALMK-----MEPAGSG---SYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEV 595 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 595 (648)
|...|...|++++|+.+++++++ ++|++|. ....+..++...|++++|..++.+++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999999998888876 4677655 4568888899999999999999999886644444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-06 Score=67.54 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYV 564 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 564 (648)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667777888888888888888887754 34567788889999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCcHHHHHHHH
Q 006364 565 LMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~ 584 (648)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777655443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00023 Score=74.29 Aligned_cols=169 Identities=6% Similarity=-0.046 Sum_probs=137.4
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 406 GSIFESQRVFNETQE---KSEFAWTAIISALARHGD----------YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 406 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
..-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888887664 356678877777777777 899999999999853 335677887777778888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc-------
Q 006364 473 --MIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG-RLEEAEELVGQIP--GGPGLSVLQSLLGACRIH------- 539 (648)
Q Consensus 473 --~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 539 (648)
+++++++.++++.+. .|. ...|+.-..++.+.| .++++++.++++. .+-+...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999865 675 888888888888999 8999999999886 345788998888877663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 540 -------GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 540 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
+.++++.+.++++++.+|.+.++|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=66.10 Aligned_cols=73 Identities=11% Similarity=-0.064 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-C-------CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP-G-------GP-GLSVL----QSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++++|...|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66666666667777766666665433 2 45 45578 889999999999999999999999999998876
Q ss_pred HHHHHH
Q 006364 563 YVLMSN 568 (648)
Q Consensus 563 ~~~l~~ 568 (648)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=77.42 Aligned_cols=152 Identities=10% Similarity=0.062 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
...+..+...|.+.|++++|...|+.....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888999999999999999987653211111 1223333444433221 13677788888889
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHHcCCHHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGA-CRIHGNVEMGER 547 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~a~~ 547 (648)
|++++|+..++...+. .|+ ...|..+..+|...|++++|...|++.. ..| +..++..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 565 7888889999999999999999998875 334 34455555544 234566778888
Q ss_pred HHHHHHhcCCCCch
Q 006364 548 IADALMKMEPAGSG 561 (648)
Q Consensus 548 ~~~~~~~~~p~~~~ 561 (648)
.++++++..|.++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999888887653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-05 Score=59.22 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.++..|..+...+...|+++.|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778888999999999999999999999999999999999999999999999999999887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=66.16 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 495 (648)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555666666665555543210 011 134555556666667777776666665432111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
.+..+...+...|++++|.+.+++.. ... ...++..+...+...|+++.|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666777777777777777665543 011 13456667778888888888888888877653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=74.45 Aligned_cols=158 Identities=10% Similarity=0.014 Sum_probs=120.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS----------------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
..+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567889999999999999875322111 246778899999999999999999887653333332
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 006364 495 ----DHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKME------ 556 (648)
Q Consensus 495 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 556 (648)
...+.+...+...|++++|..+++... ..+ ...++..|...+...|+++.|...++.+....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 234555566677899999998876543 222 35678889999999999999999999987642
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|....+|..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22346899999999999999999999987653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-05 Score=56.91 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|+++.|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5567777778888888888888877654 33466778888888999999999999999999999999999999998887
Q ss_pred hcC
Q 006364 572 EKG 574 (648)
Q Consensus 572 ~~g 574 (648)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0022 Score=61.11 Aligned_cols=177 Identities=11% Similarity=-0.003 Sum_probs=131.3
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc-HHHHHHHH
Q 006364 408 IFESQRVFNETQE---KSEFAWTAIISALARHGD--YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM-IHKGRHLF 481 (648)
Q Consensus 408 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 481 (648)
+++++.+++.+.. ++..+|+.-.-.+...|+ +++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776653 477889888888888884 899999999999863 3466777776666677777 69999999
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHhhc--------------CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc-----
Q 006364 482 DSMLKDYHIEPS-PDHYSCMVDMLGRV--------------GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH----- 539 (648)
Q Consensus 482 ~~m~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 539 (648)
+.+.+. .|+ ...|+....++.+. +.++++++.+.+.. .+-|..+|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999866 565 77777776666655 45888999888765 566888898666665554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCCcHHHHHHHHHHhh
Q 006364 540 ------GNVEMGERIADALMKMEPAGSGSYVLMSNLY---AEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 540 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 588 (648)
+-++.+.+.+++++++.|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999855544443332 245777788888887764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-05 Score=74.75 Aligned_cols=112 Identities=4% Similarity=-0.019 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
..+..+...+.+.|++++|+..|++..+. .|... .....+++.. ..+.+..+|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34555666666777777777777666532 11100 0001111111 012245678889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=74.58 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-G---------------LSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
...|..+...|.+.|++++|...|++.. ..| + ..+|..+..++...|+++.|...++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344444555555555555555554432 011 1 5778899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|.++.+|..++.+|...|++++|...+++..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-05 Score=66.16 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------CcHHHHHHHHHHhh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKG-----------DWEMVAILRKGMKS 588 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~ 588 (648)
+++|+..++++++++|+++.+|..++++|...| ++++|.+.+++..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 679999999999999999999999999999875 89999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.6e-05 Score=60.65 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+...|..+...+...|+++.|...++++++.+|.++..|..++.+|...|++++|...+++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666777777777777777777777777777777777777777777777777777766543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=54.73 Aligned_cols=69 Identities=7% Similarity=-0.046 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 523 GPGLSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
++++..+..+..++...++ .++|...++++++.+|+++.....++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888888888866655 69999999999999999999999999999999999999999999987543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00035 Score=57.62 Aligned_cols=89 Identities=2% Similarity=-0.148 Sum_probs=47.4
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 006364 500 MVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE--- 572 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 572 (648)
|...|...+.+++|.+.+++.....++..+..|...|.. .+|.++|.+.++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455554444333444445555555544 45556666666665554 345556666666665
Q ss_pred -cCCcHHHHHHHHHHhhCC
Q 006364 573 -KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 573 -~g~~~~a~~~~~~m~~~~ 590 (648)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=9.8e-05 Score=61.28 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 006364 540 GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~ 560 (648)
|++++|.+.|+++++++|++.
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999985
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00029 Score=55.31 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999999999999999999999999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00042 Score=54.90 Aligned_cols=79 Identities=6% Similarity=-0.090 Sum_probs=51.7
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
++..|+... ...|+ ...+..+...|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554 23454 6666666777777777777777666543 23446667777777777777777887777777
Q ss_pred hcCCC
Q 006364 554 KMEPA 558 (648)
Q Consensus 554 ~~~p~ 558 (648)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00053 Score=69.67 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=82.7
Q ss_pred HHHhCCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHh----cC-CCCC-hHHHH
Q 006364 432 ALARHGDYESVMNQFKEMENK---GVRPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKD----YH-IEPS-PDHYS 498 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~-~~p~-~~~~~ 498 (648)
.+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+. +| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777776542 12232 256777788888888888888877776532 22 2344 66788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIP---------GGPGLSV-LQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.|..+|...|++++|+.++++.. ..|+... ...+..++...+.++.|+..+.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877653 2344333 34444566678888899988888765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=72.62 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=79.4
Q ss_pred HHHhhcCCHHHHHHHHhhCC---------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhH
Q 006364 502 DMLGRVGRLEEAEELVGQIP---------GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKM-----EPAGS---GSY 563 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 563 (648)
..+.+.|++++|+.++++.. ..| ...+++.|..+|...|++++|+.+++++++. +|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666655432 111 1346777778888888888888888887753 45554 468
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
..|+.+|...|++++|..++++..+--. ..-...||.+.+++.+|+....+++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~--------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR--------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999987654110 0112679999999999988877664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.003 Score=65.76 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=120.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCc----------HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGM----------IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
....++|++.++++.. +.|+. ..|+.--.++.+.|+ ++++++.++.+.+. .|. ..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3446788999999998 56664 455554455555565 99999999999865 676 8888888888
Q ss_pred HhhcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-----
Q 006364 504 LGRVG--RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG-NVEMGERIADALMKMEPAGSGSYVLMSNLYAEK----- 573 (648)
Q Consensus 504 ~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 573 (648)
+.+.| ++++++++++++. .+-+..+|+.-...+...| ..+++.+.++++++.+|.+.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 89999 7799999999886 5568889999998999999 899999999999999999999999999998874
Q ss_pred ---------CCcHHHHHHHHHHh
Q 006364 574 ---------GDWEMVAILRKGMK 587 (648)
Q Consensus 574 ---------g~~~~a~~~~~~m~ 587 (648)
++++++.+.+++..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 45678877776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00024 Score=70.89 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMK-----MEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
.+++.|..+|...|++++|+.+++++++ ++|++| ..|..|+.+|...|++++|..++++..+--.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~------- 413 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME------- 413 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-------
Confidence 4567777777778888888887777775 345554 4688999999999999999999987654110
Q ss_pred EEEEcCCCceEEEecCCCCCcChHHHHHHHHH
Q 006364 599 WADVGDIDGLHGFSSGDNTHPRSEEIYRMAEC 630 (648)
Q Consensus 599 ~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 630 (648)
..-...||.+.+++.+|++
T Consensus 414 -------------~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 414 -------------VAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HHTCTTCHHHHHHHHHHHC
T ss_pred -------------HHcCCCChHHHHHHHHHhc
Confidence 0112679999998887763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00065 Score=50.84 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...|..+...+...|+++.|...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888889999999999999999999999999999999999999999999999999988765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0029 Score=51.94 Aligned_cols=112 Identities=9% Similarity=-0.051 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHH
Q 006364 437 GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEE 512 (648)
Q Consensus 437 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 512 (648)
+++++|+..|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34433 666777888889999999998754 356778888888887 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEP 557 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 557 (648)
|.+++++.....++..+..|...+.. .+|.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987766778888889988888 8999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.001 Score=51.06 Aligned_cols=64 Identities=6% Similarity=-0.088 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
...+..+..+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...+++++++.|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5555666666666666666666665543 223445566666666666666666666666666544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.016 Score=55.48 Aligned_cols=135 Identities=10% Similarity=-0.025 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc--------cCcHHHHHHHHHHhHHh
Q 006364 422 SEFAWTAIISALAR--HG---DYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGR--------NGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 422 ~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~ 487 (648)
+...|...+.+... .+ ...+|+.+|++..+ ..|+- ..|..+..++.. ..........+.... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~-a 269 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV-T 269 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-h
Confidence 55666666655332 22 34778888888877 45663 344433333320 000011111111110 0
Q ss_pred cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 488 YHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 488 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
....| +..+|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 01112 24455554444444455555555555443 22444444444445555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0027 Score=48.39 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=50.6
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLS-VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
....+.+.|++++|...+++.. .+.+.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3556677888888888887654 334566 788888888889999999999999999999988776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0076 Score=57.61 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHhcc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---cC-----C---HHHHHHH
Q 006364 454 VRPDSITFLSVLTVCGR-----NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR---VG-----R---LEEAEEL 516 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 516 (648)
.+.+...|...+++... .....+|+.+|++..+. .|+ ...|..+..+|.- .+ . +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45667777777766532 34468899999999855 898 6666655444421 11 1 1222322
Q ss_pred HhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 517 VGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 517 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...+. .+.++.+|..+...+...|+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22232 356778888888888888999999999999999996 4678899999999999999999999876553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=64.33 Aligned_cols=94 Identities=10% Similarity=-0.130 Sum_probs=61.7
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDY--HIE---PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQSLL 533 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 533 (648)
..|++++|..++++..+.. -+. |+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456677776666654321 122 23 5567777777777777777777766543 2243 34578888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCchhH
Q 006364 534 GACRIHGNVEMGERIADALMK-----MEPAGSGSY 563 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 563 (648)
..|..+|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 888888888888888888876 357666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0024 Score=48.64 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=53.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG-SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
....+...|+++.|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999 9999999999999999999999987653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.088 Score=41.33 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=95.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
+.-.|..++..++..+.... .+..-||-++.-....-+-+-..+.++..-+-|.+.| +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34567788888888887653 2344455555544444555556666666644443332 333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
....+-.+. .+.......+.....+|.-+.-.+++..++..+|.+|+....++++|.+.|+..++.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333333322 233345566778888999998899988877778888999999999999999999999999999999885
Q ss_pred c
Q 006364 593 K 593 (648)
Q Consensus 593 ~ 593 (648)
-
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0045 Score=61.83 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=59.6
Q ss_pred hcccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYH--IEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQS 531 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 531 (648)
+...|++++|+.++++..+... +.|+ ..+++.++.+|...|++++|+.++++.. ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666665543211 1222 4556666667777777777766665443 2233 335777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 006364 532 LLGACRIHGNVEMGERIADALMK-----MEPAGSGSYV 564 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 564 (648)
|...|...|++++|+.+++++++ ++|++|.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 78888888888888888888775 4677765543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=44.29 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
+...+..|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566667777777777777665533 124567888999999999999999999999999999998775
Q ss_pred HHHH
Q 006364 564 VLMS 567 (648)
Q Consensus 564 ~~l~ 567 (648)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=1.4 Score=45.75 Aligned_cols=114 Identities=14% Similarity=0.019 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 438 DYESVMNQFKEMENKG-VRPDSI--TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876533 322221 2233333445555344555555554332 334333444444555779999999
Q ss_pred HHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 515 ELVGQIPGGP--GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 515 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..|+.|+..+ .....--+..+....|+.+.|..+++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999887542 233333455677788999999998888875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.025 Score=51.68 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCcHHHHHHHHHHhhCCCccCCc
Q 006364 526 LSVLQSLLGACRI-----HGNVEMGERIADALMKMEPAG-SGSYVLMSNLYAEK-GDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 526 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
...|..|+..|.. -|+.++|++.|+++++++|+. ..+++..+..++.. |+.+++.+.+++......+.+|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 4455666666665 488999999999999999974 89999999988884 88999999998888777665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.017 Score=47.22 Aligned_cols=91 Identities=15% Similarity=0.022 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHHcCCHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG---RLEEAEELVGQIP-GG-P--GLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~a 545 (648)
....+.+.|.+..+. +. ++..+...+..++.+.+ +.+++..+++... .. | ....+-.|.-++.+.|+++.|
T Consensus 13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544332 22 45555556666666666 4556666665543 11 3 245566777788999999999
Q ss_pred HHHHHHHHhcCCCCchhHHH
Q 006364 546 ERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999988655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0064 Score=59.38 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=141.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006364 90 SEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASAC 169 (648)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 169 (648)
..+.+|+.|-.+..+.|.+.+|++-|= +..|+..|..+|....+.| .+++-+..+...++..-.|. .=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 456778888888888888888877653 3467778888999998888 88777777665555433343 335788888
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-CChhhHHHHHHHHHH
Q 006364 170 GHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNREDAVSLFKEMRL 248 (648)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-g~~~~a~~~~~~m~~ 248 (648)
++.+++.+-.+++. .||..-...+-+-|...|.++.|.-+|..+..-.-.+ .+++. |++..|++.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLA-stLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA-STLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTS-SSSSSCSGGGSSTTTTTT---
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHH-HHHHHHHHHHHHHHHHHh---
Confidence 88888776554443 5677667777888888888888888887776421111 11111 344433332111
Q ss_pred CCCCCChhhHHHHHHHHhcCCchHHHH------------------------------HHHHHHHHhcC-CCCchhHHHHH
Q 006364 249 DGVCPNDVTFIGLIHAISIGNLVKEGR------------------------------MIHGLCIKTNF-LSEPSVCNCLI 297 (648)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~~~~~~a~------------------------------~~~~~~~~~~~-~~~~~~~~~li 297 (648)
.-+..||--+-.+|...+.+..|. .+++.-. |+ .....+++-|.
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELa 270 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 270 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 124455655555665555444432 2222211 11 23445567777
Q ss_pred HHHHhcCChHHHHHHHhhc----CCC-------CcccHHHHHHHHHhcCCcHHHHH
Q 006364 298 TMYARFESMQDSEKVFDEL----SCR-------EIISWNALISGYAQNGLSLAAVQ 342 (648)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~ 342 (648)
-.|++- ++++..+.++.. .-| ....|.-++-.|....+++.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777765 444444444332 222 33578888888888888887754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.057 Score=40.32 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHhhcCC---HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 493 SPDHYSCMVDMLGRVGR---LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+...+..+..++...++ .++|..++++.. .+.++..+..+...+...|+++.|...|+++++.+|++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46677777777755444 688888887765 44556677777788888888888888888888888873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.063 Score=59.07 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=60.3
Q ss_pred hcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 006364 404 KRGSIFESQR-VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 404 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
..+++++|.+ ++..+..+ .....++..+.+.|..++|+++.+. | ..-| ......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~f----~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPD-------Q-DQKF----ELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHHH----HHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCC-------c-chhe----ehhhhcCCHHHHHHHHH
Confidence 4577777777 55333301 1226666777777777777765531 1 1112 22345677888877754
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 483 SMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 483 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
.+ .+...|..+.+.+.+.|+++.|.+.|.++.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 32 346778888888888888888888887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.27 Score=53.98 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=57.2
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
....|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445678888887776653 456788888888888888888888877642 223333333355555444443
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+..... | + ++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~-~---~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G---K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333221 1 1 222333444556666665555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.25 Score=48.54 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=89.8
Q ss_pred CCChhHHHHHhhcCCCCCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHH
Q 006364 7 SGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIV 84 (648)
Q Consensus 7 ~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 84 (648)
.|++.+|+..|- +..|...|..+|....+.+ +.+-=|-.|.+...+ ++..=+.|+-+|++.+++.+..++..
T Consensus 67 ~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk~~rL~elEefl~--- 140 (624)
T 3lvg_A 67 KGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN--- 140 (624)
T ss_dssp SSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHTSCSSSTTTSTTS---
T ss_pred cCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHhhCcHHHHHHHHc---
Confidence 344444444442 2233444555566555555 222223334333222 33333455666666665554443332
Q ss_pred HhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC------------------------CCcchHHHHHHHHHcCCCCh
Q 006364 85 KFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN------------------------KDSVSWNAILSGYTQDGDYG 140 (648)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~ 140 (648)
.|+..-...+-+-+...|.++.|.-+|..+.. .++.+|.-+-.+|...+ .+
T Consensus 141 ----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-Ef 215 (624)
T 3lvg_A 141 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EF 215 (624)
T ss_dssp ----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TT
T ss_pred ----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HH
Confidence 34444445555555556666666666655542 25566777777777666 55
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcC-CCCcchHHHHHHHHHhC
Q 006364 141 VEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGY-GTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 207 (648)
.-|.-.--.+. ........++.-|-..|.+++-..+++.-+ |+ .....+++-|.-.|+|-
T Consensus 216 rLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 216 RLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc
Confidence 44433322222 112223345555666666666666555443 21 23344556666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.051 Score=44.48 Aligned_cols=66 Identities=8% Similarity=-0.008 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHG---NVEMGERIADALMKME-P-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..+...+.+++.+.+ +.++|..+++.+.+.+ | .+...+..|+-.|.+.|++++|.+.++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 478888999999999988 6779999999999988 6 4678899999999999999999999998875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.12 Score=39.55 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKME-------PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..-...++..+...|+++.|..-++.+++.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556788899999999999999999998753 34466899999999999999999999988764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.2 Score=37.49 Aligned_cols=127 Identities=9% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877766 4566788888888888888888888877542 23333334445666555444
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+.
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHH
Confidence 4333222 1 13334444556777777777776654222111 112335555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=1.4 Score=34.74 Aligned_cols=140 Identities=8% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 006364 231 MISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSE 310 (648)
Q Consensus 231 li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 310 (648)
+++|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+ |--.|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHHH
Confidence 3446667777766666553 23344444444333333333333333322 222222 2344444444
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 311 KVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
..+-.+.. +....+..+......|.-++--+++..+..+.+|++.....+..||.+.| +..++.+++.+..+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg--~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVG--DERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhhH
Confidence 44443322 22344555666777777777777777765566777777777788888888 777777777777777653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.78 Score=36.00 Aligned_cols=90 Identities=14% Similarity=-0.024 Sum_probs=55.7
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH---HHHHHhhCCCC--C--CHHHHHHHHHHHHHcCCHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE---AEELVGQIPGG--P--GLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
..+.+-|...... +. |+..+--.+..++.+.....+ ++.+++..... | .....-.|.-++.+.|+++.|.+
T Consensus 18 ~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444332 22 555555555666666655444 56666554422 2 22344556678899999999999
Q ss_pred HHHHHHhcCCCCchhHHHH
Q 006364 548 IADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l 566 (648)
.++.+++.+|.+..+..+.
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999987665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.21 Score=52.97 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...|...|+++.|.++++++...-|.+-.+|..|+.+|...|+|+.|.-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557789999999999999999999999999999999999999999999998774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.79 Score=38.50 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=19.9
Q ss_pred cccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 69 DHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
..|+++.|.++...+ .+...|..|-+...+.|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444443332 23334444444444444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.16 Score=46.49 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhc-----CCHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 006364 496 HYSCMVDMLGRV-----GRLEEAEELVGQIP-GGP--GLSVLQSLLGACRI-HGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 496 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~ 558 (648)
.|..|...|.+. |+.++|.+.|++.. ..| +..++......++. .|+.+.+.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444555555442 55555555555433 222 13444444444444 25555555556665555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.78 E-value=0.95 Score=36.53 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 508 GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 508 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
++.++|.++|+.+. .+.-..+|-.....-.++|++..|.+++.+++.+.|.+.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 45555555555442 2222667777777778899999999999999998887654433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.74 Score=37.96 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=60.8
Q ss_pred CCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 452 KGVRPDSI--TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-------PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 452 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+.+++...|++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556543 3344455666777777777766664433222333 2355666777777777777777666532
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 522 ------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 522 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..++..+ ++. ...... .-.. .+.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~--~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRP--STG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccc--ccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1121100 000 000000 0000 1233456678999999999999999998754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.08 E-value=1.7 Score=35.17 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=45.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
..+|.++|..+|+.++.+...-+.+|...++--.+.|+...|.+++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 348999999999999887655577888888888899999999999997776443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.78 Score=44.91 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh-----CCCccCCce
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS-----KGVRKEVGF 597 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 597 (648)
...++.++...|+.+.+...++.+...+|-+...|..++.+|.+.|+..+|.+.+++++. .|+.|.|..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445666777888888888888888888888888899999999999999888888877643 477666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.07 E-value=2.7 Score=33.11 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 491 EPSPDHYSCMVDMLGRVGRL---EEAEELVGQIP-GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 491 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+..+--.+..++.+.... .+++.+++... ..| ....+--|.-++.+.|+++.|.+..+.+++.+|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 45555555556666666543 34555555433 223 23445556667777777777777777777777776544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.06 E-value=1.2 Score=34.96 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEM---GERIADALMKME-P-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|+..+--.+.+++.+.++... +..+++.+...+ | ..-.....|+-.+.+.|++++|.+..+.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4778888888888888876655 888888877766 4 3456778899999999999999999998874
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.19 E-value=9.8 Score=30.43 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 491 EPSPDHYSCMVDMLGRVGRL---EEAEELVGQIP-GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 491 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+..+--.+..++.+..+. .+++.+++... ..| .....--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 57777777777788887754 45666666543 223 23345556678889999999999999999999988544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.08 E-value=9.1 Score=43.54 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhh
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDIS 372 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~ 372 (648)
...++..+.+.+..+-+.++..-.+ .+...--.+..+|...|++++|.+.|.+...++..+..... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~------------~ 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA------------V 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS------------S
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh------------h
Confidence 4456667778888888887665554 34444445667888999999999999987654432221100 0
Q ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCHHHHHHHHhhc----CCCC----hhHHHHHHHHHHhCCChHHH
Q 006364 373 LKHGQRCHSHIIKVG--LDSDPIVGSALLDMYGKRGSIFESQRVFNET----QEKS----EFAWTAIISALARHGDYESV 442 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A 442 (648)
... ...+.... ...-..-|..++..+.+.|.++.+.++-... ...+ ...|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 1122345677778888888888877665432 2222 12689999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 006364 443 MNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 443 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 476 (648)
...+-.+.....+ ...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9999888765443 3455566666666555444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.85 E-value=6.1 Score=39.35 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhc----cc
Q 006364 406 GSIFESQRVFNETQE-----K----SEFAWTAIISALARHGDYESVMNQFKEMEN-KGVRPDSITFLSVLTVCG----RN 471 (648)
Q Consensus 406 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~----~~ 471 (648)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+.. .|..+...+ .+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888887754432 1 344577788999999999999888876654 343333332 3333221 12
Q ss_pred C--cHHHHHHHHHHhHH--hcCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CC-CC----HHHHHHHHHHH
Q 006364 472 G--MIHKGRHLFDSMLK--DYHIEP---SPDHYSCMVDMLGRVGRLEEAEELVGQIP---GG-PG----LSVLQSLLGAC 536 (648)
Q Consensus 472 g--~~~~a~~~~~~m~~--~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~----~~~~~~l~~~~ 536 (648)
. +.+.-..+.+.... ...+-- .......|...|...|++.+|.+++..++ .. -+ ...+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 22222222222110 001111 12344678899999999999999998765 11 11 34566677889
Q ss_pred HHcCCHHHHHHHHHHHHh---cCCCCc----hhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 537 RIHGNVEMGERIADALMK---MEPAGS----GSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...+|+..|..+++++.. -.+.++ ..|...+..+...++|.+|.+.+.+.-
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999998753 123332 467888999999999999888776553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.58 E-value=4.8 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+-.-|++.+..+.+.+|++.+|+..|.++++-+.....+...+|-.+.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 335699999999999999999999999999998876655556666553
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=86.28 E-value=14 Score=33.69 Aligned_cols=20 Identities=5% Similarity=-0.094 Sum_probs=10.8
Q ss_pred HHHHHHhCCChhHHHHHhcc
Q 006364 98 LITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~ 117 (648)
.+...++.|+.+-+..+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444555666655555554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.26 E-value=4 Score=30.22 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
+.-+...-++.+....+.|++....+.|.||.+.+++..|.++|+....+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344566666677777789999999999999999999999999999987653 3335567777653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.75 E-value=3.3 Score=34.14 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIPGG 523 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 523 (648)
.+.---+..+|.+.|++++|+.+++.++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344444667777777777777777777643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.73 E-value=7.5 Score=41.33 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|...|+++.|+++-++.+. ..|+ -.+|..|..+|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567888888888887764 4776 7888888888888888888888888776
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.49 E-value=51 Score=35.97 Aligned_cols=250 Identities=11% Similarity=-0.005 Sum_probs=130.2
Q ss_pred HHHhcCChHHHHHHHhhcCCC----Cc--ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CC--C-----CCHHHHHHHHHH
Q 006364 299 MYARFESMQDSEKVFDELSCR----EI--ISWNALISGYAQNGLSLAAVQAFFGVIK-ES--K-----PNAYTFGSVLNA 364 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~-----p~~~~~~~ll~a 364 (648)
+....|+.+++..+++.-... +. ..-..+.-+.+..|..++++.++..... .. . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345678888888888876542 11 2233344566677777788888877665 21 0 111111122122
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLD-SDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYE 440 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 440 (648)
.+..|..+ +++...+..+....-. ......-+|...|.-.|+-+....++..+.+. ++.-.-++.-|+...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 22222112 3334444443332110 00112223444455667877777777654322 2223334445566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFL---SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
.+-.+.+.+... ..| ..-|. .+..+|+..|+.....++++.+.++ ...++.....+.-++.-.|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888763 122 22333 3445788899987777798888654 2223444444444555567766677777
Q ss_pred hhCCCCCCHHHHHHHHHHH--HHcCCH-HHHHHHHHHHH
Q 006364 518 GQIPGGPGLSVLQSLLGAC--RIHGNV-EMGERIADALM 553 (648)
Q Consensus 518 ~~~~~~~~~~~~~~l~~~~--~~~g~~-~~a~~~~~~~~ 553 (648)
+.+....++.+-....-++ ...|+- ..+...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6555344444433333222 223332 34555555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.18 E-value=5.8 Score=38.69 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----hcCCCCChHHHHH
Q 006364 427 TAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK----DYHIEPSPDHYSC 499 (648)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~ 499 (648)
..++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|++.|+...+ +.|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566777788888888888887764 344677888888888888888888888877643 4688888665433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.05 E-value=8 Score=28.43 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=62.0
Q ss_pred cChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHH
Q 006364 71 EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEM 150 (648)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m 150 (648)
..-++|..|-+.+...|. ...+.-.-+..+...|++++|..+.+...-||..+|-++-.. +.| ..+++...+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLG-LGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHHH
Confidence 356777778777776653 333333444667789999999999999999999999887654 566 667777777777
Q ss_pred HHCCCCCChhhHH
Q 006364 151 MRKGLRLDHVSFT 163 (648)
Q Consensus 151 ~~~g~~p~~~t~~ 163 (648)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 34444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.39 E-value=18 Score=32.60 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHhhc
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD----HYSCMVDMLGRV 507 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l~~~~~~~ 507 (648)
.+.+.|+.++|++....-++. -+-|...-..++.-+|-.|++++|..-++...+- .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 344566666666666665554 2334444455566666667777776666665432 45422 23333322
Q ss_pred CCHHHHHHHHhh--CC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCch
Q 006364 508 GRLEEAEELVGQ--IP--GGPGLSVLQSLLGACR--IHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 508 g~~~~A~~~~~~--~~--~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
....+ ++|.. .| ..........++.+.. ..|+.+.|..+-+.+.+.-|..+.
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111 12221 11 1111222333444433 346777777777776666655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.87 E-value=9 Score=30.19 Aligned_cols=81 Identities=9% Similarity=0.040 Sum_probs=51.7
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHH
Q 006364 443 MNQFKEME-NK-GVRPDSITFLSVLTVCGRNG---MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 443 ~~~~~~m~-~~-g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
+..|++.- +. +-.|+..|--....++.++. +..+|+.+++...+. .|. .+.+-.|.-++.|.|++++|.+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444433 22 34455555444455554443 566788888888766 353 6667777888889999999998
Q ss_pred HHhhCC-CCCCH
Q 006364 516 LVGQIP-GGPGL 526 (648)
Q Consensus 516 ~~~~~~-~~~~~ 526 (648)
..+.+. ..|+-
T Consensus 100 y~d~lL~~eP~N 111 (134)
T 3o48_A 100 YVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHTTCTTC
T ss_pred HHHHHHhhCCCC
Confidence 888754 44543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.82 E-value=8.7 Score=43.69 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=73.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 428 AIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
.++..+...+.++-|.++..- ++-+...--.+..++...|++++|.++|.+... ++.++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 455566666666666553321 233433333445566777777777777776531 232211000
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHhcCCcHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-----SYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 581 (648)
....+...+..... ...-..-|..++..+.+++.++.+.+..+.+++..+.+.. .|..+.+.+...|++++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00000111111111 1122334555666666666666666666666654432221 35555666666677776666
Q ss_pred HHHHHhhCCCcc
Q 006364 582 LRKGMKSKGVRK 593 (648)
Q Consensus 582 ~~~~m~~~~~~~ 593 (648)
.+-.+.+...++
T Consensus 960 aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 960 ALMVLSTTPLKK 971 (1139)
T ss_dssp HHHHHHHSSSCH
T ss_pred HHHhCCCHHHHH
Confidence 665555444433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.32 E-value=32 Score=32.00 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHH----HHHhHh-CCCCCHHHHHHHHHHhccC
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQA----FFGVIK-ESKPNAYTFGSVLNAVGAA 368 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~-~~~p~~~~~~~ll~a~~~~ 368 (648)
.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+ +.+++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4556667888888888877543 22345556666655554 333333 6777777777777666553
Q ss_pred chhh---HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CChH
Q 006364 369 EDIS---LKHGQRCHSHIIKVG--LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARH---GDYE 440 (648)
Q Consensus 369 ~~~~---~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 440 (648)
.... ..-.........+.| ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3111 122222223333333 2357888999999999999999999987633322344444444333332 2222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
++ |...--.++ -|...|+...|..+|+...+.
T Consensus 186 e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 21 111111222 244567888888888877544
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=82.03 E-value=30 Score=34.04 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=9.4
Q ss_pred HHHHHhCCChhHHHHHhcc
Q 006364 99 ITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~ 117 (648)
+...++.|+.+-+.-+++.
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC
Confidence 3334445555555555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.88 E-value=7.1 Score=28.75 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHCC
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLDG 250 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~g 250 (648)
..++|..|-+.+...+- ...+--+-+..+...|++++|..+.+....||...|-++-. |-.+++..-+.++..+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34455555555544432 22222223345667899999999999999999999999887 66666666665655543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.57 E-value=42 Score=32.49 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=11.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhhc
Q 006364 397 ALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~ 418 (648)
.|...|.+.|+.++..+++...
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.43 E-value=6.8 Score=28.81 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHCC
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLDG 250 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~g 250 (648)
..++|..|-+.+...+- ...+--+-+..+...|++++|..+.+....||...|-++-. |-.+++..-+.++..+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34455555555544432 22222223345667899999999999999999999998887 66666666666666554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.37 E-value=12 Score=27.53 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=60.8
Q ss_pred cChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHH
Q 006364 71 EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEM 150 (648)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m 150 (648)
..-++|..|-+.+...|. ...+.-.-+..+...|++++|..+.+...-||..+|-++-.. +.| ..+++...+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLG-LGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHHH
Confidence 356777778887776653 333333444667789999999999999999999999888665 445 556666666677
Q ss_pred HHCCCCCChhhHH
Q 006364 151 MRKGLRLDHVSFT 163 (648)
Q Consensus 151 ~~~g~~p~~~t~~ 163 (648)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6655 34444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.62 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.4 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.85 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.19 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.4e-19 Score=176.44 Aligned_cols=310 Identities=10% Similarity=0.065 Sum_probs=220.4
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhc---CCCCcccHHHHHHHHHh
Q 006364 257 TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDEL---SCREIISWNALISGYAQ 333 (648)
Q Consensus 257 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~ 333 (648)
++..+...+...|++++|...+....+... .+..............+....+....... .................
T Consensus 69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344444444445555555555554444331 22222222333333333333333322222 22233444445555666
Q ss_pred cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHH
Q 006364 334 NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQR 413 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 413 (648)
.+....+...+.......+.+...+..+...+...+ ..+.|...+....+.. +.+...+..+...|...|++++|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cchhhhhHHHHHHhhccCcchhHHHHhhcccccccC--cHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHH
Confidence 666677777666666544455666666667777777 7778888777777654 3355677788888899999999999
Q ss_pred HHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 414 VFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 414 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
.|+.... .+...|..+...+.+.|++++|+..|++..+. .|+ ..++..+...+...|++++|.+.++.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 300 (388)
T d1w3ba_ 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-- 300 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--
Confidence 8886553 46677888889999999999999999998874 454 577888888999999999999999988755
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GG-PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
.|+ ...+..+...+.+.|++++|.+.+++.. .. .+..+|..+..++...|++++|...++++++++|+++.+|..|
T Consensus 301 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 301 -CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred -CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 454 7888899999999999999999998854 33 4577888899999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 006364 567 SNLYAEKGD 575 (648)
Q Consensus 567 ~~~~~~~g~ 575 (648)
+++|.+.||
T Consensus 380 g~~~~~~~D 388 (388)
T d1w3ba_ 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCC
Confidence 999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.9e-18 Score=171.69 Aligned_cols=345 Identities=15% Similarity=0.156 Sum_probs=276.3
Q ss_pred CChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
|++++|.+.|+++.+. .| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|...
T Consensus 13 G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 5666666666666654 35 45667777888999999999999999998875 44567888999999999999999999
Q ss_pred HhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 313 FDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 313 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
+...... +...+..........+....+............................+ ....+........... +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHC-T
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--hhhhhHHHHHHhhccC-c
Confidence 9887543 33445555555666677777777776666633334444444444444555 6666666666666544 3
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.+...+..+...+...|++++|...++...+ .+..+|..+...+...|++++|+..|++....+ ..+...+..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHH
Confidence 4567788889999999999999999987653 367789999999999999999999999998853 445677888888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+.+.|++++|+..|++..+ +.|+ ...+..+..++...|++++|.+.++... .+.+...+..+...+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence 99999999999999999875 4776 8899999999999999999999998765 4567788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+|...++++++..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1e-12 Score=126.22 Aligned_cols=263 Identities=11% Similarity=0.025 Sum_probs=157.4
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhH
Q 006364 297 ITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISL 373 (648)
Q Consensus 297 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~ 373 (648)
...+.+.|++++|...|++..+. ++.+|..+..++...|++++|+..|.+..+-.+-+...+..+...+...+ +.
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES--LQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc--cc
Confidence 33455555555555555554321 23445555555555555555555555554422223344444444444444 44
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 374 KHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
++|...+........... .......... ...+.......+..+...+...+|...|.+.....
T Consensus 104 ~~A~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYA-HLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccchH-HHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 444444444333211100 0000000000 00001111112233445566788888888877632
Q ss_pred -CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 -VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 -~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
-.++...+..+...+...|++++|+..|+..... .|+ ...|..+...|.+.|++++|.+.+++.. .+.+..+|
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2345667778888889999999999999998755 676 8888899999999999999999998765 34467789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHhcCCcHHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGS-----------YVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 581 (648)
..++.+|...|++++|...+++++++.|.+... |..+..++...|+++.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999988876553 4556777777777765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.3e-13 Score=126.95 Aligned_cols=227 Identities=9% Similarity=-0.004 Sum_probs=158.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 006364 326 ALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405 (648)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (648)
.....+.+.|++++|+..|++..+..+-+..+|..+..++...| +.+.|...+....+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~~p----------------- 84 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE--QELLAISALRRCLELKP----------------- 84 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHhhhcccc-----------------
Confidence 34556677777777777777776644444555555555555555 55555555555444321
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHhc
Q 006364 406 GSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI----------------TFLSVLTVCG 469 (648)
Q Consensus 406 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~a~~ 469 (648)
.+...|..+...|...|++++|++.+++.... .|+.. .....+..+.
T Consensus 85 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 85 ---------------DNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred ---------------ccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 23344555555555555555555555555442 12110 0111122334
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
..+...++...|....+...-.++...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|++++|.+
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence 4567888999998887653334457888899999999999999999998864 44568889999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.1e-08 Score=96.65 Aligned_cols=260 Identities=8% Similarity=-0.036 Sum_probs=170.5
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC--C-C-----cccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHh
Q 006364 296 LITMYARFESMQDSEKVFDELSC--R-E-----IISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAV 365 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~~--~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~ 365 (648)
....+...|++++|..++++... | + ...++.+...|...|++++|+..|++... ...++...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------- 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-------- 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--------
Confidence 34555666777777776665421 1 1 12455555666666777777666665543 11111110
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHH
Q 006364 366 GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------K----SEFAWTAIISALA 434 (648)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~ 434 (648)
....+..+...|...|++..+...+..... + ....+..+...+.
T Consensus 90 -------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 144 (366)
T d1hz4a_ 90 -------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144 (366)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence 112234455566677777777776664321 1 1234566777888
Q ss_pred hCCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHh
Q 006364 435 RHGDYESVMNQFKEMENKGVR----PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDMLG 505 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~ 505 (648)
..|+++.+...+......... ....++......+...|+...+...+........-... ...+..+...+.
T Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T d1hz4a_ 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 899999999999888763222 22345555666677788888888887776543222211 345666777888
Q ss_pred hcCCHHHHHHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCchhHHHHHHHHHhc
Q 006364 506 RVGRLEEAEELVGQIPG-G-----PGLSVLQSLLGACRIHGNVEMGERIADALMKM------EPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~ 573 (648)
..|++++|...++.... . .....+..+..++...|+++.|...+++++.. .|....++..++.+|...
T Consensus 225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 99999999999987651 1 22445667788899999999999999998743 355567899999999999
Q ss_pred CCcHHHHHHHHHHhh
Q 006364 574 GDWEMVAILRKGMKS 588 (648)
Q Consensus 574 g~~~~a~~~~~~m~~ 588 (648)
|++++|.+.+++..+
T Consensus 305 g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALK 319 (366)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=4.3e-09 Score=99.43 Aligned_cols=189 Identities=9% Similarity=0.066 Sum_probs=121.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGD-YESVMNQFKEMENKGVRPD-SITFLSVLTVC 468 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 468 (648)
.++.+...+.+.+..++|+++++.+.+ | +..+|+....++...|+ +++|+..+++..+. .|+ ..+|......+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 344455556666677777777776553 2 45566766666666553 67777777776663 333 56666666677
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC----
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN---- 541 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---- 541 (648)
.+.|++++|++.++.+.+. .|+ ...|..+..++.+.|++++|++.++++. .+.+...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 7777777777777777643 565 6677777777777777777777777654 33456666666655555443
Q ss_pred --HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 542 --VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 542 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.|...+.++++++|.+...|..++.++...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 456777777777777777777777777665544 3555565555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=3.6e-08 Score=92.88 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S-EFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5677788888887665566677788888888889999999999887653 2 2 3468888888888889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC----
Q 006364 448 EMENKGVRPDSITFLSVLT-VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP---- 521 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 521 (648)
++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .|+ ...|...++.+.+.|++++|..+|++..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 8887532 23333333222 234467888899999988765 454 7788888888888999999988888753
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 522 GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 522 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
..| ....|...+..-..+|+.+.+..+++++.+..|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 222 245788888888888999999888888888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=5e-08 Score=93.92 Aligned_cols=288 Identities=10% Similarity=-0.019 Sum_probs=175.4
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChHHHHHHHhhcCC-----CC----cccHHHHHH
Q 006364 263 HAISIGNLVKEGRMIHGLCIKTNFLSE----PSVCNCLITMYARFESMQDSEKVFDELSC-----RE----IISWNALIS 329 (648)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~ 329 (648)
..+...|++++|..+++...+..-..+ ...+..+...|...|++++|...|+.... ++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345678888888888888776432111 23466677888899999999988877642 11 134555666
Q ss_pred HHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhhcC
Q 006364 330 GYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS---DPIVGSALLDMYGKRG 406 (648)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g 406 (648)
.+...|++..+...+..... +. ...+... ....+..+...|...|
T Consensus 100 ~~~~~~~~~~a~~~~~~al~-----------------------------~~---~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQ-----------------------------LI---NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------------HH---HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------Hh---HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 77788888888887766543 00 0000000 1122334455566666
Q ss_pred CHHHHHHHHhhcCC--------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHhcccC
Q 006364 407 SIFESQRVFNETQE--------KSEFAWTAIISALARHGDYESVMNQFKEMENK--GVRPD----SITFLSVLTVCGRNG 472 (648)
Q Consensus 407 ~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~t~~~ll~a~~~~g 472 (648)
+++.+...+..... ....++..+...+...++...+...+.+.... ..... ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 66666666654431 12234555556667777777777777665441 11111 123444555667788
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHHHcCCH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP-GLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~ 542 (648)
++++|...+....+...-.+. ...+..+...+...|++++|...+++.. ..| ...++..+...+...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 888888888776533111111 4455667788888888888888877653 222 234667777888888999
Q ss_pred HHHHHHHHHHHhcCCC---------CchhHHHHHHHHHhcCCcHHHHHH
Q 006364 543 EMGERIADALMKMEPA---------GSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
++|.+.+++++++.+. ....+..+...+...++.+++.+-
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999988888876432 122344455556667777777553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.1e-08 Score=96.45 Aligned_cols=160 Identities=8% Similarity=0.042 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccC-cHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNG-MIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
..|+.+...+.+.+.+++|+++++++++ +.|+. ..|+....++...| ++++|+..++...+. .|+ ..+|..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---~p~~~~a~~~~ 118 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---QPKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---HHhhhhHHHHH
Confidence 3677778888999999999999999999 56765 56677777777766 599999999999755 787 8999999
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC---
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD--- 575 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--- 575 (648)
...+.+.|++++|++.++++. .+.+..+|..+...+...|+++.|...++++++++|.+..+|..++.++...|+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 999999999999999999876 456789999999999999999999999999999999999999999999988877
Q ss_pred ---cHHHHHHHHHHhh
Q 006364 576 ---WEMVAILRKGMKS 588 (648)
Q Consensus 576 ---~~~a~~~~~~m~~ 588 (648)
+++|.+.+.+..+
T Consensus 199 ~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHH
Confidence 4677777665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=6.7e-10 Score=106.61 Aligned_cols=232 Identities=8% Similarity=-0.061 Sum_probs=169.5
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
..|++++|+..++...+..+.+...+..+..++...+..+.+++...+..+.+.........+......+...|..++|.
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 34456788888888877556666677666666656553367888888888887754433333445567788889999999
Q ss_pred HHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 413 RVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 413 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
..++...+. +..+|+.+...+.+.|++++|...+.+... +.|+.. .+...+...+..+++...+......
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~-- 237 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG-- 237 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--
Confidence 999987753 677899999999999999888766655443 122221 2223344455666777777776543
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
.|+ ...+..++..+...|+.++|...+.+.. ..| +..+|..++..+...|+.++|...++++++++|.+...|..|
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 443 5666777788888899999999888755 334 456788888999999999999999999999999998999988
Q ss_pred HHHHHh
Q 006364 567 SNLYAE 572 (648)
Q Consensus 567 ~~~~~~ 572 (648)
+..+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 888764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=8.7e-09 Score=94.57 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVC 468 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 468 (648)
.++..+..+|.+.|++++|.+.|++..+ .++.+|+.+..+|.+.|++++|+..|++..+. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 3555667778888888888888876542 36778888888888888888888888888773 443 45677777778
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHH----HcCCH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACR----IHGNV 542 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~----~~g~~ 542 (648)
...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+..... ..+....+. ++..+. ..+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 8888888888888887654 454 4444444444555555444443333221 111111111 111111 11223
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.+...+.......|....+|..++.+|...|++++|.+.+++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333333334444566667778888888888888888888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1.6e-07 Score=88.34 Aligned_cols=181 Identities=10% Similarity=0.056 Sum_probs=144.6
Q ss_pred CCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 406 GSIFESQRVFNETQE----KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 406 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
+..++|..+|+...+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+.+.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456788888886542 3567899999999999999999999999987533333457889999999999999999999
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHH-HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 482 DSMLKDYHIEPS-PDHYSCMVDM-LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 482 ~~m~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
+.+.+. .|+ ...|...+.. +...|+.+.|..+++.+. .+.++..|...+..+...|+.+.|..+|+++++..|
T Consensus 158 ~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999754 454 4455444443 344689999999999876 345688999999999999999999999999999877
Q ss_pred CCch----hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 558 AGSG----SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 558 ~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543 6777777778889999999999988653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=4.7e-08 Score=89.50 Aligned_cols=200 Identities=10% Similarity=-0.070 Sum_probs=124.7
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 006364 357 TFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISAL 433 (648)
Q Consensus 357 ~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 433 (648)
++..+-.++.+.| +.+.|...|...++.. +.++.+++.+..+|.+.|++++|.+.|+...+ .+..+|..+..+|
T Consensus 39 ~~~~~G~~y~~~g--~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLG--LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 3334444555555 6666666666666543 33566777888888888888888888887653 3566888888999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR---- 509 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~---- 509 (648)
...|++++|+..|++..+.. +.+......+..++.+.+..+....+....... .+....+.. +..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhhH-HHHHHHHHHHHHH
Confidence 99999999999999988742 223444334444445555555555555544322 232222322 222222222
Q ss_pred HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 510 LEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 510 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
.+.+...+.... ..| ...+|..+...+...|+++.|...+++++..+|++...|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222222222111 112 2346777889999999999999999999999998865553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=8.9e-08 Score=74.99 Aligned_cols=104 Identities=15% Similarity=0.031 Sum_probs=74.0
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|+.+|+..++. .|+ ...|..+..+|.+.|++++|+..+++.. .+.++..|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34556677777777777777644 565 6677777777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
+++|...++++++++|.++..+..+.++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 777777777777777777777777766544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.1e-07 Score=72.82 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=82.4
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
-...+.+.|++++|+..|++.. .+.++..|..+..++...|+++.|...++++++++|.++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 4677889999999999999875 56678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006364 578 MVAILRKGMKS 588 (648)
Q Consensus 578 ~a~~~~~~m~~ 588 (648)
+|...+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=1.2e-08 Score=97.56 Aligned_cols=209 Identities=5% Similarity=-0.169 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--CHHHHHHHHhhcCC---CChhHHHH-HHHHHHhCCChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG--SIFESQRVFNETQE---KSEFAWTA-IISALARHGDYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~ 445 (648)
.++++...++.+.+.. +.+...+..+..++...+ ++++|...+....+ ++...|.. ....+...+.+++|+..
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence 4566666676666654 234444455544444443 46777777766542 24444443 33556666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GG 523 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 523 (648)
+++..+.. +-+...|..+...+...|++++|...+....+. .|. .......+...+..+++...+.... .+
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence 77766642 223556666666667777776665555444322 222 1112233444555566665555432 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++...+..++..+...|+.+.|...+.+..+.+|.+..++..++.+|...|++++|.+.+++..+
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445666777788889999999999999999999999999999999999999999999998764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=1.1e-07 Score=83.18 Aligned_cols=114 Identities=5% Similarity=-0.148 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSL 532 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 532 (648)
|+...+......+...|++++|+..|+..++. .|+ ...|..+..+|.+.|++++|+..+++.. ..| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55566666667777777777777777776644 555 6667777777777777777777776654 223 45667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
+.++...|+++.|...+++++++.|.+...+...+..+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 7777777777777777777777666555444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=6e-07 Score=74.70 Aligned_cols=115 Identities=9% Similarity=-0.028 Sum_probs=93.6
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...|.+.|++++|+..|++..+. .|+ ...|..+..+|...|++++|...|++.. .+.+..+|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 44667888999999999888754 676 8888889999999999999999988765 45567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCCcHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYA--EKGDWEMVAIL 582 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 582 (648)
+++|...++++.++.|.++..+..+..+.. ..+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888776643 33456666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=1.7e-07 Score=72.55 Aligned_cols=88 Identities=7% Similarity=-0.098 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
.+...+.+.|++++|...+++.. .+-++.+|..+..++...|+++.|+..++++++++|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45677888999999999998865 3346888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006364 577 EMVAILRKGM 586 (648)
Q Consensus 577 ~~a~~~~~~m 586 (648)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=7.6e-07 Score=82.62 Aligned_cols=187 Identities=7% Similarity=-0.013 Sum_probs=127.7
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 006364 398 LLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVMNQFKEMENKGV---RPD--SITFLS 463 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 463 (648)
....|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45678888888888888876542 12 35788889999999999999999998765211 111 345566
Q ss_pred HHHHh-cccCcHHHHHHHHHHhHHhc---CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CC----CH-HHH
Q 006364 464 VLTVC-GRNGMIHKGRHLFDSMLKDY---HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-G---GP----GL-SVL 529 (648)
Q Consensus 464 ll~a~-~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~-~~~ 529 (648)
+...| ...|++++|++.|++..+-. +..+. ..++..+...+...|++++|...+++.. . .+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 66666 44699999999998875432 22222 5668889999999999999999998753 1 11 11 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHh--cCCcHHHHHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSG-----SYVLMSNLYAE--KGDWEMVAILRK 584 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~ 584 (648)
...+..+...|+.+.|...++++.+.+|..+. ....++.++.. .+++++|...++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555677889999999999999999875433 33455555554 345778877774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.5e-07 Score=75.93 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
.|+- ...+...|++++|++.|.++ ..|+..+|..+..++...|++++|++.|++.++. .|+ ...|..+..+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 79 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHH
Confidence 3543 55667888899998888764 4567778888888888899999999999888754 676 7888888888
Q ss_pred HhhcCCHHHHHHHHhhCC----CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 504 LGRVGRLEEAEELVGQIP----GGP--------------GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~----~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+.+.|++++|.+.|++.. ..+ ...++..+..++...|+++.|.+.++++.++.|..
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 888899888888777642 111 12455666777788888888888888888777754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.4e-07 Score=74.55 Aligned_cols=91 Identities=8% Similarity=-0.097 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
......|.+.|++++|+..|++.. .+.+...|..+...+...|+++.|...++++++++|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 344667889999999999999876 556788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhh
Q 006364 576 WEMVAILRKGMKS 588 (648)
Q Consensus 576 ~~~a~~~~~~m~~ 588 (648)
+++|.+.+++...
T Consensus 94 ~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 94 FRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3.3e-07 Score=79.94 Aligned_cols=97 Identities=6% Similarity=-0.079 Sum_probs=78.9
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
|+....-.....|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|+... .+.|+ ..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 445556667788899999999999999888742 3346778888888899999999999999886 56887 888888
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+..+|.+.|++++|...+++..
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999998888653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=4.5e-06 Score=71.53 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=83.0
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 477 (648)
...+...|+++.|.+.|..+..++..+|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 455666777888888887777777777777777788888888888888877763 343 56677777777778888888
Q ss_pred HHHHHHhHHhcCC-------------CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 478 RHLFDSMLKDYHI-------------EPS-PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 478 ~~~~~~m~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+..|++......- .++ ..++..+..++.+.|++++|.+.+...
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776542110 111 245556677777778888887777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.7e-06 Score=71.40 Aligned_cols=133 Identities=8% Similarity=-0.029 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
.+......+.+.|++++|+..|.+.+.. -|.... .... -......+ ...+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~---------~~~~---~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS---------FSNE---EAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC---------CCSH---HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc---------cchH---HHhhhchh--------HHHHHHHHHHHH
Confidence 4455566777788888888888777652 111000 0000 00011111 123577788899
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 579 (648)
.+.|++++|+..++... .+.++.+|..++.++...|+++.|...++++++++|+++.+...+..++...+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 4457889999999999999999999999999999999999999999998777655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1e-06 Score=68.88 Aligned_cols=107 Identities=14% Similarity=-0.008 Sum_probs=85.5
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC---HHHHHHHHhhCCC-CCCH---HHHHHHH
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR---LEEAEELVGQIPG-GPGL---SVLQSLL 533 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~---~~~~~l~ 533 (648)
..++..+...+++++|.+.|+..... .|+ ..++..+..++.+.++ +++|+.+++++.. .|++ .+|..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35677788889999999999998754 665 7888888888887554 4568999988653 3433 3688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
.+|...|++++|.+.++++++++|++..+...+..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887776665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=3.6e-06 Score=77.88 Aligned_cols=172 Identities=8% Similarity=0.019 Sum_probs=130.6
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
++++|.++|. .....|...|++++|++.|.+..+. +-+|+ ..+|..+..+|...|++++|.+.+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4667766644 4577899999999999999998762 22222 367888899999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHhh-cCCHHHHHHHHhhCC------CC-C-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 482 DSMLKDYHIEPS----PDHYSCMVDMLGR-VGRLEEAEELVGQIP------GG-P-GLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 482 ~~m~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~------~~-~-~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
+...+-+.-..+ ..++..+...|.. .|++++|.+.+++.. .. + ...++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987643221222 5566777777754 699999999987654 11 1 134678889999999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 549 ADALMKMEPAGSG-------SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 549 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++++....|.++. .+...+.++...|+++.|.+.+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999998876643 4567788888999999999999876543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.2e-05 Score=67.16 Aligned_cols=108 Identities=8% Similarity=-0.019 Sum_probs=77.6
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD-HYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIH 539 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (648)
+......+.+.|++++|+..|...++...-.+... .....+. . ....+|..+..+|.+.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~------------~--------~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ------------A--------LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHH------------H--------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhc------------h--------hHHHHHHHHHHHHHhh
Confidence 33444566667777777777776665432222200 0000000 0 0124567788889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|+++.|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.14 E-value=1.9e-05 Score=65.89 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
..|..+..+|.+.|++++|+..++... .+.+..+|..+..++...|+++.|...++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356678888999999999999988765 566788899999999999999999999999999999999999999998877
Q ss_pred cCCcHH-HHHHHHHH
Q 006364 573 KGDWEM-VAILRKGM 586 (648)
Q Consensus 573 ~g~~~~-a~~~~~~m 586 (648)
.+...+ ..+++..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 765543 44454444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.4e-06 Score=68.08 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=78.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--chhHHHHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG---NVEMGERIADALMKMEPAG--SGSYVLMSNL 569 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 569 (648)
...+++.+...+++++|.+.|++.. .+.++.++..+..++...+ ++++|..+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3567888889999999999999876 5678889999999887644 5567999999999988755 4588999999
Q ss_pred HHhcCCcHHHHHHHHHHhh
Q 006364 570 YAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 570 ~~~~g~~~~a~~~~~~m~~ 588 (648)
|.+.|++++|.+.++++.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.1e-05 Score=67.56 Aligned_cols=129 Identities=5% Similarity=-0.034 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh
Q 006364 427 TAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLG 505 (648)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~ 505 (648)
......+...|++++|+..|.+.... .+. .... .... . ...+.|. ...|..+..++.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~-------~~~~---~~~~-------~---~~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VEG-------SRAA---AEDA-------D---GAKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HHH-------HHHH---SCHH-------H---HGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hhh-------hhhh---hhhH-------H---HHHhChhhHHHHHHHHHHHH
Confidence 34556677788888888888876541 000 0000 0000 0 0122343 667888899999
Q ss_pred hcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 506 RVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+.|++++|+..+++.. .+.++.+|..++.++...|+++.|...++++++++|+++.++..+..++.......
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 45677889999999999999999999999999999999999998888876544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=6.6e-06 Score=68.93 Aligned_cols=86 Identities=8% Similarity=0.034 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcC
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGD 604 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 604 (648)
....|..+..++.+.|+++.|...++++++++|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 45567888889999999999999999999999999999999999999999999999999887642
Q ss_pred CCceEEEecCCCCCcChHHHHHHHHHHHHHhccc
Q 006364 605 IDGLHGFSSGDNTHPRSEEIYRMAECLGSEMKYL 638 (648)
Q Consensus 605 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 638 (648)
.|....+...|..+...++..
T Consensus 141 -------------~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 141 -------------APEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHH
Confidence 244456677777776666533
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7e-06 Score=64.95 Aligned_cols=91 Identities=5% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-------SYVLMS 567 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 567 (648)
+..+...+.+.|++++|+..|.+.. .+.+..+|..+..++...|+++.|...++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456777888888888888887765 4556888899999999999999999999999999888765 456677
Q ss_pred HHHHhcCCcHHHHHHHHHHh
Q 006364 568 NLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~m~ 587 (648)
.++...+++++|.+.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888889999999987654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=7.2e-06 Score=67.27 Aligned_cols=62 Identities=11% Similarity=-0.061 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..+..++.+.|+++.|...++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888889999999999999999999999999999999999999999988876653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=3e-05 Score=63.44 Aligned_cols=128 Identities=8% Similarity=-0.062 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
..+......+.+.|++.+|+..|.+.... .|... ...-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45666777888889999999998888763 11100 0000000000000 123467788999
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
|.+.|++++|++.+++.. .+.+..+|..++.++...|+++.|...++++++++|.++.+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999998865 456788999999999999999999999999999999999888877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.00069 Score=60.95 Aligned_cols=180 Identities=6% Similarity=-0.078 Sum_probs=114.1
Q ss_pred CCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHHHH
Q 006364 406 GSIFESQRVFNETQEK-SEFAWTAIISALAR----HGDYESVMNQFKEMENKGVRPDSITFL-SVLTVCGRNGMIHKGRH 479 (648)
Q Consensus 406 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~ 479 (648)
.+...|...+.....+ +...+..+...+.. ..+.+.|...+++..+.|..+....+. ..............+..
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHH
Confidence 3455555555544332 33444444444432 456778888888877765432222211 11112234556677777
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 006364 480 LFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADA 551 (648)
Q Consensus 480 ~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 551 (648)
.+..... ..+...+..|...|.. ..+...+...++......+...+..|...+.. ..|.+.|...+++
T Consensus 132 ~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 7776543 2446666677777665 44567777777766555677777777766665 5689999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCCC
Q 006364 552 LMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 591 (648)
+.+.+ ++..+..|+.+|.. ..+.++|.+.+++.-+.|.
T Consensus 208 aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 208 ACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 98875 56788899999986 3478899999988776664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=1.6e-05 Score=66.31 Aligned_cols=62 Identities=6% Similarity=-0.056 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+|..+..++...|+++.|...++++++++|.+..+|..++.+|...|++++|.+.+++..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=9.2e-07 Score=88.86 Aligned_cols=146 Identities=10% Similarity=0.078 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 006364 439 YESVMNQFKEMENKGVRPDSITFLSVLTVC--GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 439 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
+..+++.++...+....++..-....+..+ ...+.++.++..+... +++.|+ ...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345566666655543334432222222121 2234455555444433 355565 6667777777777777777776
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 516 LVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 516 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+..........++..++..++..|+++.|...|+++.++.|+++..|..|+.+|...|++.+|...+.+..
T Consensus 142 ~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555432111134566677778888888888888888888888888888888888888888888877776554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=2.4e-05 Score=60.03 Aligned_cols=87 Identities=8% Similarity=-0.042 Sum_probs=53.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh
Q 006364 428 AIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLG 505 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~ 505 (648)
.+...+.+.|++++|+..|++.... .| +...|..+..++.+.|++++|+..|+...+. .|+ ...+..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHH
Confidence 3455566666666666666666653 33 3455666666666666666666666666533 554 566666666666
Q ss_pred hcCCHHHHHHHHhh
Q 006364 506 RVGRLEEAEELVGQ 519 (648)
Q Consensus 506 ~~g~~~~A~~~~~~ 519 (648)
..|++++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=2.8e-05 Score=65.28 Aligned_cols=118 Identities=13% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL--EEAEELVGQIPGGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 541 (648)
........|++++|.+.|.....-+.-.+-.. +. .+.+ .++..+-. .....+..+...+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~-~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LR-DFQFVEPFATALVE-----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GT-TSTTHHHHHHHHHH-----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------Cc-chHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
Confidence 33466788999999999988875322111000 00 0110 11111111 124567888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh-----CCCccCC
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS-----KGVRKEV 595 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 595 (648)
++.|...++++++.+|.+...|..++.+|...|++.+|.+.+++++. .|+.|.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999999998743 4666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=1.8e-05 Score=63.95 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=70.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccc----------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRN----------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
-+.+.+++|+..|+...+. .|+ ...+..+..+|... +.+++|+..|+++.+ +.|+ ..+|..+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 3445566666666666663 333 34454555454422 334556666665553 2554 55555555
Q ss_pred HHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 502 DMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
.+|...|++. ++... ..++++.|.+.|+++++++|++...+..|..... |.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k-------a~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK-------APQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT-------HHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH-------HHH
Confidence 5554443211 11110 1124688999999999999999888877777654 445
Q ss_pred HHHHHhhCCC
Q 006364 582 LRKGMKSKGV 591 (648)
Q Consensus 582 ~~~~m~~~~~ 591 (648)
+..+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 5555545543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.0032 Score=57.82 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=86.9
Q ss_pred CCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHH
Q 006364 54 VFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGY 133 (648)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 133 (648)
.||..--..+...|.+.|.++.|..+|..+. -|..++..|.+.+++..|.+++... .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 4566666677788889999999999987542 3778888888999999988887654 3566888888888
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCE 208 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (648)
.+.. ...-+ .+.......+......++..|-..|.++....+++..... -..+..+++-++..|++.+
T Consensus 80 ~~~~-e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGK-EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTT-CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HhCc-HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 8877 54332 2223334456666677888888888888888888866532 2456667788888888864
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=2.2e-05 Score=63.43 Aligned_cols=95 Identities=9% Similarity=0.126 Sum_probs=67.8
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
|.+.+.+++|++.|+...+. .|+ ...+..+..+|...+++..+.+ ..+.+++|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 44556677777777777644 565 6666666666665555444333 223467899
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCC-----------cHHHHHHHHHHh
Q 006364 547 RIADALMKMEPAGSGSYVLMSNLYAEKGD-----------WEMVAILRKGMK 587 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~ 587 (648)
..++++++++|+++.+|..++.+|...|+ +++|.+.+++..
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 99999999999999999999999988764 567777776554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00011 Score=54.16 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP--------GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
..+-.+...+.+.|++++|...+++.. ..+ ...++..|..++.+.|++++|...++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334456677777777777777766542 112 25678889999999999999999999999999999998888
Q ss_pred HHHHH
Q 006364 566 MSNLY 570 (648)
Q Consensus 566 l~~~~ 570 (648)
+....
T Consensus 86 l~~~~ 90 (95)
T d1tjca_ 86 LKYFE 90 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00035 Score=54.72 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
+-.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|...|++++|++.++.++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344455555566666666665555531 2234455555555555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.53 E-value=0.032 Score=50.95 Aligned_cols=135 Identities=8% Similarity=0.010 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHH
Q 006364 253 PNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYA 332 (648)
Q Consensus 253 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 332 (648)
||..-...+..-|.+.|.++.|..++..+.. |..++..|.+.++++.|.+.+.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 3444444455555566666666666654332 345556666666666666665544 24445666666665
Q ss_pred hcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 333 QNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
+.....-| .+.. ....+......++..+-..| ..++...++...... -..+...++-++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~--~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRG--YFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 55443322 1111 23334444455566665555 555555555544321 2344555666666666643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.44 E-value=0.013 Score=52.01 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=26.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHhhc
Q 006364 260 GLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FESMQDSEKVFDEL 316 (648)
Q Consensus 260 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~ 316 (648)
.+-..+...+++++|.+.|+...+.| +...+..|..+|.. ..+...|...+...
T Consensus 7 ~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a 64 (265)
T d1ouva_ 7 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 64 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence 33334445556666666666555544 23333344444443 33445555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00026 Score=57.86 Aligned_cols=62 Identities=10% Similarity=-0.166 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPA-----------GSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..|+.+..++...|+++.|...+++.+++.|. ...+|..++.+|...|++++|.+.+++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888887765432 123678899999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.00023 Score=63.66 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=87.4
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 512 (648)
.+.|++++|+..+++.++. -+-|...+..+...++..|++++|...|+...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 4578889999999888884 2334677888888889999999999999888754 776 5566666666655555555
Q ss_pred HHHHHhh--CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 513 AEELVGQ--IPGGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 513 A~~~~~~--~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
+..-... ...+|+ ...+......+...|+.+.|...++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4433222 112232 22333445667788999999999999999888876654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=2.8e-05 Score=77.75 Aligned_cols=167 Identities=7% Similarity=-0.073 Sum_probs=92.1
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQ---EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
.++.|...+.... .++...|..+...+.+.|+.++|...+.+.... .| ..++..+...+...|++++|+..|++
T Consensus 101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~ 177 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRH 177 (497)
T ss_dssp HHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444444444332 234566777888888899999999888776542 12 35677788888999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA-- 558 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-- 558 (648)
..+. .|+ ...|+.|...+...|+..+|...|.+.. .+|.+.++..|...+.+..+...+. ...+.
T Consensus 178 A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~-------~~~~~~~ 247 (497)
T d1ya0a1 178 AAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV-------KTKWGVS 247 (497)
T ss_dssp HHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC-------CSSCCHH
T ss_pred HHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh-------ccccccc
Confidence 8754 787 7899999999999999999999887754 5678888888877766543321110 00011
Q ss_pred -CchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 559 -GSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 559 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
-...+..+...+...+.+++..++.+++
T Consensus 248 ~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 248 DFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 1224555556666667766665555433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.21 E-value=0.00012 Score=65.59 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=85.2
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 544 (648)
..+.|++++|+..+++.++. .|+ ...+..++.+|+..|++++|...++... ..| +...+..+...+...+..+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 35679999999999999865 786 8999999999999999999999998865 334 34555555555544443333
Q ss_pred HHHHHHHHHh-cCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 545 GERIADALMK-MEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 545 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+......... .+|++...+...+.++...|++++|.+.+++..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222111111 23444556677788899999999999999887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.0033 Score=52.07 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK----DYHIEPSPDHY 497 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 497 (648)
..+..+...+...|++++|+..++++.+. -+-+...|..++.++...|+.++|++.|+.+.+ ..|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 46777888888999999999999998874 234578888899999999999999988888743 46888886653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00094 Score=48.79 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG-------SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...+-.++..+...|+++.|...+++++++.|.+ ..+|..|+.+|.+.|++++|.+.+++..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 4445678889999999999999999999876544 35789999999999999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0012 Score=53.58 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
..|+.+..+|...|++++|...+++.. ..++ ..++..+..++...|++++|...|++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 345555666666666666655554432 1111 2246778888999999999999999999886544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.26 Score=47.22 Aligned_cols=52 Identities=15% Similarity=-0.077 Sum_probs=28.3
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh
Q 006364 297 ITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 297 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
+..+.+.++++.....+..-+ .++..-.....+....|+..+|...+...-.
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~ 130 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 344555666666555443221 1233333455566667777777776666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.40 E-value=0.058 Score=39.79 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=100.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++..-+-|.+.|-. ....++.++.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 44568888888888887753 345566667766666666677777777775555444421 11223344444442
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
+.......+.....+|.-+.-.++++.+.+.+..+|+....++++|.+.|...++.+++.+.-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 23344556778888999999999999988888888999999999999999999999999999999875
Q ss_pred c
Q 006364 593 K 593 (648)
Q Consensus 593 ~ 593 (648)
-
T Consensus 153 e 153 (161)
T d1wy6a1 153 E 153 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.24 E-value=0.34 Score=37.01 Aligned_cols=49 Identities=2% Similarity=-0.050 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCCC
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 591 (648)
|.+.|.+.++++.+.+ ++.....|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4556666666665543 34455566666654 2456666666666555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.02 E-value=0.46 Score=36.19 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEA 513 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 513 (648)
++++|+.+|++..+.|... ....+ +.....+.++|.+.+++..+. | ++..+..|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5677888888877766322 22222 234456788888888877554 3 34455555555543 4567888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 006364 514 EELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 558 (648)
.++|++....-++.....|...+.. ..|.++|.+.++++.+.+..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888876655556666666666654 45888999999998877643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.19 Score=37.38 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 492 PSPDHYSCMVDMLGRVG---RLEEAEELVGQIP-GGP-GL-SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 492 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
|+..+--....++.+.. +.++++.++++.. ..| +. ..|-.|.-+|.+.|+++.|.+.++++++++|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44445445555555543 3456666666543 122 22 455566666777777777777777777777776544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.85 E-value=0.6 Score=34.60 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+.++|+.+++...+. .|. ...+-.|.-+|.+.|++++|.+.++.+
T Consensus 53 d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 53 DERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555555433 232 234444455555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.68 E-value=2.3 Score=31.20 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=93.4
Q ss_pred hhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.-.|.+++..++..+...+ +..-||=+|.-....-+.+-..+.++..-+ -.| ....++.......+
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHHH
Confidence 3467888888888776543 455566566555555555555555544422 111 13445556666665
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
-.+ ..+.+....-++.+..+|+-+.-.++.+.+. .+|++...-.+..+|.+.|+..++..++.++-+.+
T Consensus 80 ~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 80 VIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 544 3345667777889999999999888888743 56899999999999999999999999999887654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.19 E-value=3 Score=28.88 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 521 PGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 521 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
-.-|++.+..+.+.+|++.+|+..|.++++........+...|-.+
T Consensus 36 DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 36 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3569999999999999999999999999999886654445566654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.89 E-value=5.6 Score=27.49 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+.-++..-++.+....+.|++....+.|.||.+.+++..|.++|+....+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 445566666777777789999999999999999999999999999887653 344557766654
|