Citrus Sinensis ID: 006437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
Protein Sequence
MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVGR
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccHHHHHHHHcccccccHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHcHHHccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHccccEHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlwrckrslfyTAQRTQILKTIISFKsihqisspkvcatthqdfpiilaphivhstllncpsdlIALSFFIWCAKqrdyfhdvqsFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDemgrfgftpntfARNIVMDVLFKIGRVDLGIKVlketqlpnflSFNIALCnlcklndvsnvKDVIGMmvrkgfypnVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMvqngcspnvVTYTSLIKGFMEAKMFSIAFSFLDMleseghapdlvFHNVLIDCLskmgsyddaLDVYDGLLelklvpdsytfCSLLSTVCLsgrfsllpklvcglevEADLVVYNALLSYFCKAGFPNQAVKLYNTMldkgftpdnysFVGLLRGLCGARKIDEAINVYQGivmnnpavnaHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKhiavppnaYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLgllsdetmtpvslfdgfvpcerragnanhlllnggvgr
Flexible Loop (DISEMBL)
mlwrckrslfytAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGelarvgcvikAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEkmvqngcspNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRaivekypldvVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERragnanhlllnggvgr
Low Complexity Region (SEG)
MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVGR
Disordered region (IsUnstruct)
*LWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLL******
Disordered Region (DISOPRED)
MLWRC**SLFY***RTQILKTIISFKSIHQISS*****TTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVGR
Disordered Region (DISEMBL)
MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVGR
Disordered Region (DISPRO)
MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMTPVSLFDGFVPCERRAGNANHLLLNGGVGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	645	2.2.26 [Sep-21-2011]
Q3EDA9	608	Putative pentatricopeptid	yes	no	0.896	0.950	0.414	1e-130
Q9C8T7	559	Pentatricopeptide repeat-	no	no	0.646	0.745	0.268	4e-47
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.815	0.697	0.235	1e-46
Q9SH26	577	Pentatricopeptide repeat-	no	no	0.706	0.790	0.261	1e-45
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.669	0.683	0.252	2e-45
Q9SXD8	634	Pentatricopeptide repeat-	no	no	0.682	0.694	0.263	2e-45
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.669	0.703	0.252	3e-44
Q9CAN6	590	Pentatricopeptide repeat-	no	no	0.631	0.689	0.263	8e-44
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.648	0.663	0.251	5e-43
Q9LQ15	528	Pentatricopeptide repeat-	no	no	0.668	0.816	0.252	1e-42

>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2

 Score =  467 bits (1202), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/598 (41%), Positives = 364/598 (60%), Gaps = 20/598 (3%)

Query: 1   MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCAT---THQDFPIILAPHIVHSTL 57
           MLWRC     +  QR +IL T+ SF SIH     +  A    TH +         V+S L
Sbjct: 1   MLWRCN----WVKQRKRILNTL-SFSSIHGQYPREYTAAKPLTHDN---------VYSCL 46

Query: 58  LNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVI 117
              P+DL  L+FF WCAKQ +YFHD ++FDHM+ VV +LT  + ++  I+  L   GC I
Sbjct: 47  RESPADLKTLNFFFWCAKQNNYFHDDRAFDHMVGVVEKLTREYYSIDRIIERLKISGCEI 106

Query: 118 KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVL 177
           K + FLL L I+WRG +Y   +E +  M  FGF PNT A N++MDV FK+  V+  +++ 
Sbjct: 107 KPRVFLLLLEIFWRGHIYDKAIEVYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIF 166

Query: 178 KETQLPNFLSFNIALCNLCKLN---DVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234
           +  +  NF SF+IAL + C      D+  VK V+  M+ +GFYPN   F  +L   C+ G
Sbjct: 167 EGIRFRNFFSFDIALSHFCSRGGRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTG 226

Query: 235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYT 294
            ++EA+Q++GLMI  G S+SVN W++L+ GF R      A  L+ KM+Q GCSPN+VTYT
Sbjct: 227 CVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYT 286

Query: 295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354
           SLIKGF++  M   AF+ L  ++SEG APD+V  N++I   +++G +++A  V+  L + 
Sbjct: 287 SLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKR 346

Query: 355 KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKL 414
           KLVPD YTF S+LS++CLSG+F L+P++  G+  + DLV  N L + F K G+ + A+K+
Sbjct: 347 KLVPDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDLVTGNLLSNCFSKIGYNSYALKV 406

Query: 415 YNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474
            + M  K F  D Y++   L  LC       AI +Y+ I+     ++AH H+AI+D LIE
Sbjct: 407 LSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIE 466

Query: 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT 534
            G+ + A+ LF+R I+EKYPLDVVSYTVAI+GL+   R EEAY L   MK   + PN  T
Sbjct: 467 LGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRT 526

Query: 535 YRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592
           YR ++   CKE+  + V+++L++ I   +ELD +T  ++   + ++    S    + E
Sbjct: 527 YRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLLSRYRGDFSEFRSVFE 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 214/424 (50%), Gaps = 7/424 (1%)

Query: 152 PNTFARNIVMDVLFKIGRVDLGIKVLKETQL----PNFLSFNIALCNLCKLNDVSNVKDV 207
           P+ F  N ++  + K+ + DL I + ++ Q      N  ++NI +   C+ + +S    +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRR 267
           +G M++ G+ P++     LLN +C   RI++A  L+  M+ +G       +T LI G   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 268 LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327
             +   A  L ++MVQ GC PN+VTY  ++ G  +     +AF+ L+ +E+     D+V 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL- 386
            N +ID L K    DDAL+++  +    + P+  T+ SL+S +C  GR+S   +L+  + 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 387 --EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID 444
             ++  +LV +NAL+  F K G   +A KL++ M+ +   PD +++  L+ G C   ++D
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504
           +A  +++ +V  +   +   +  ++    ++ R     +LFR         D V+YT  I
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564
           +GL   G  + A  ++ QM    VPP+  TY ++L   C    ++    +   +  + I+
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 565 LDYH 568
           LD +
Sbjct: 428 LDIY 431

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  188 bits (477), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 263/551 (47%), Gaps = 25/551 (4%)

Query: 32  SSPKVCATTHQDFPIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMIS 91
           +SP   A +  D  ++        +L + P D  AL  F   +K+ ++  +   ++ ++ 
Sbjct: 39  ASPHSAALSSTDVKLL-------DSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILL 91

Query: 92  VVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEM-GRFGF 150
            + R +G F+ ++ I+ ++    C +   TFL+ +  Y + E+   +L   D M   FG 
Sbjct: 92  RLGR-SGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGL 150

Query: 151 TPNTFARNIVMDVLF--------KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVS 202
            P+T   N ++++L         +I    + +  +K    P+  +FN+ +  LC+ + + 
Sbjct: 151 KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK----PDVSTFNVLIKALCRAHQLR 206

Query: 203 NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLI 262
               ++  M   G  P+ + F  ++  + + G +  A ++   M+  G S S  +  V++
Sbjct: 207 PAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV 266

Query: 263 DGFRRLRRL-DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH 321
            GF +  R+ D   ++ E   Q+G  P+  T+ +L+ G  +A     A   +D++  EG+
Sbjct: 267 HGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326

Query: 322 APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF---SL 378
            PD+  +N +I  L K+G   +A++V D ++     P++ T+ +L+ST+C   +    + 
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386

Query: 379 LPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC 438
           L +++    +  D+  +N+L+   C       A++L+  M  KG  PD +++  L+  LC
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446

Query: 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498
              K+DEA+N+ + + ++  A +   +  ++D   +A +  +A ++F    V     + V
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506

Query: 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV 558
           +Y   I GL +  R E+A  L  QM      P+ YTY  +L  FC+  +IK    ++Q +
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566

Query: 559 IDARIELDYHT 569
                E D  T
Sbjct: 567 TSNGCEPDIVT 577

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 240/489 (49%), Gaps = 33/489 (6%)

Query: 127 RIYWRGEMYGMVLEAFDEMGRFGFT------PNTFARNIVMDVLFKIGRVDLGIKVLKET 180
           R   R  ++ M L+  D +G FG        P+ F  N ++  + K+ + DL I + ++ 
Sbjct: 54  REILRNGLHSMKLD--DAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111

Query: 181 QL----PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRI 236
           Q      N  ++NI +   C+ + +S    ++G M++ G+ P++     LLN +C   RI
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171

Query: 237 AEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL 296
           ++A  L+  M+ +G       +T LI G     +   A  L ++MVQ GC PN+VTY  +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231

Query: 297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL 356
           + G  +     +AF+ L+ +E+     ++V ++ +ID L K    DDAL+++  +    +
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291

Query: 357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVK 413
            P+  T+ SL+S +C   R+S   +L+  +   ++  ++V +NAL+  F K G   +A K
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351

Query: 414 LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473
           LY+ M+ +   PD +++  L+ G C   ++DEA ++++ ++  +   N   +  +++   
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411

Query: 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533
           +A R  + ++LFR         + V+YT  I G  +    + A +++ QM    V PN  
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE- 592
           TY  +L   CK  N K+ K        A +  +Y    ++   I+ +       N ++E 
Sbjct: 472 TYNTLLDGLCK--NGKLEK--------AMVVFEYLQRSKMEPTIYTY-------NIMIEG 514

Query: 593 MCNLGLIPD 601
           MC  G + D
Sbjct: 515 MCKAGKVED 523

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 222/439 (50%), Gaps = 7/439 (1%)

Query: 138 VLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL----PNFLSFNIALC 193
            ++ F +M +    P+    N ++  + K+ + +L I + ++ Q      +  +++I + 
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 194 NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL 253
             C+ + +S    V+  M++ G+ P++     LLN +C   RI++A  L+  M+ +G   
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFL 313
               +T LI G     +   A  L ++MVQ GC P++VTY +++ G  +     +A S L
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246

Query: 314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373
             +E      D+V +N +ID L K    DDAL+++  +    + PD +T+ SL+S +C  
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNY 306

Query: 374 GRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF 430
           GR+S   +L+  +   ++  ++V ++AL+  F K G   +A KLY+ M+ +   PD +++
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366

Query: 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV 490
             L+ G C   ++DEA ++++ ++  +   N   ++ ++    +A R  + ++LFR    
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426

Query: 491 EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550
                + V+YT  I G  +    + A +++ QM  + V PN  TY ++L   CK   +  
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAK 486

Query: 551 VKRLLQDVIDARIELDYHT 569
              + + +  + +E D +T
Sbjct: 487 AMVVFEYLQRSTMEPDIYT 505

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 223/455 (49%), Gaps = 15/455 (3%)

Query: 127 RIYWRGEMYGMVLEAFDEMGRFGFT------PNTFARNIVMDVLFKIGRVD----LGIKV 176
           R   R  ++ M L+  D +G FG        P+    N ++  + K+ + D    LG K+
Sbjct: 54  REILRNGLHDMKLD--DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKM 111

Query: 177 LKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRI 236
            +   +    ++NI +   C+ + +S    ++G M++ G+ P++     LLN +C   RI
Sbjct: 112 QRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171

Query: 237 AEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL 296
           ++A  L+  M+ +G       +T LI G     +   A  L ++MVQ GC PN+VTY  +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231

Query: 297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL 356
           + G  +     +A + L+ +E+     D+V  N +ID L K    DDAL+++  +    +
Sbjct: 232 VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 291

Query: 357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVK 413
            P+  T+ SL+S +C  GR+S   +L+  +   ++  +LV +NAL+  F K G   +A K
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351

Query: 414 LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473
           LY+ M+ +   PD +++  L+ G C   ++D+A  +++ +V  +   +   +  ++    
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411

Query: 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533
           ++ R     +LFR         D V+YT  I+GL   G  + A  ++ QM    VPP+  
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471

Query: 534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYH 568
           TY ++L   C    ++    +   +  + I+LD +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 221/439 (50%), Gaps = 7/439 (1%)

Query: 138 VLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL----PNFLSFNIALC 193
            ++ F EM +    P+    + ++  + K+ + DL I   ++ ++     N  ++NI + 
Sbjct: 49  AVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMIN 108

Query: 194 NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL 253
            LC+ + +S    ++G M++ G+ P++     LLN FC   RI+EA  L+  M+ +G   
Sbjct: 109 CLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 168

Query: 254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFL 313
               +T L+ G  +  +   A  L E+MV  GC P++VTY ++I G  +     +A + L
Sbjct: 169 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228

Query: 314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373
           + +E      D+V ++ +ID L K    DDAL+++  +    + PD +T+ SL+S +C  
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNY 288

Query: 374 GRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF 430
           GR+S   +L+  +   ++  ++V +N+L+  F K G   +A KL++ M+ +   P+  ++
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348

Query: 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV 490
             L+ G C   ++DEA  ++  +V  +   +   +  +++   +A +    ++LFR    
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408

Query: 491 EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550
                + V+YT  I G  +    + A +++ QM    V PN  TY  +L   CK   ++ 
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468

Query: 551 VKRLLQDVIDARIELDYHT 569
              + + +  +++E D +T
Sbjct: 469 AMVVFEYLQKSKMEPDIYT 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1

 Score =  179 bits (453), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 212/421 (50%), Gaps = 14/421 (3%)

Query: 143 DEMGRFGFT------PNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIAL 192
           D +G FG        P+    + ++  + K+ + DL I + ++ Q      N  +++I +
Sbjct: 58  DAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFI 117

Query: 193 CNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTS 252
              C+ + +S    ++G M++ G+ P++     LLN FC   RI+EA  L+  M+ +G  
Sbjct: 118 NYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 177

Query: 253 LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF 312
                +T L+ G  +  +   A  L E+MV  GC P++VTY ++I G  +     +A + 
Sbjct: 178 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 237

Query: 313 LDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCL 372
           L+ +E      D+V +N +ID L K    DDA D+++ +    + PD +T+  L+S +C 
Sbjct: 238 LNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCN 297

Query: 373 SGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTML-DKGFTPDNY 428
            GR+S   +L+  +    +  DLV +NAL+  F K G   +A KLY+ M+  K   PD  
Sbjct: 298 YGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVV 357

Query: 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRA 488
           ++  L++G C  ++++E + V++ +       N   +T ++    +A  C  A  +F++ 
Sbjct: 358 AYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417

Query: 489 IVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI 548
           + +    D+++Y + + GL   G  E A +++  M+   +  +  TY  M+ + CK   +
Sbjct: 418 VSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKV 477

Query: 549 K 549
           +
Sbjct: 478 E 478

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 212/425 (49%), Gaps = 7/425 (1%)

Query: 152 PNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCKLNDVSNVKDV 207
           P+    + ++  + K+ + DL I + ++ Q      N  +++I +   C+ + +S    V
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRR 267
           +  M++ G+ P++     LLN FC   RI++A  L+G M+ +G       +  LI G  R
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 268 LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327
             R   A  L ++MV  GC P++VTY  ++ G  +     +A S L  +E     P +V 
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL- 386
           +N +ID L    + +DAL+++  +    + P+  T+ SL+  +C  GR+S   +L+  + 
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 387 --EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID 444
             ++  ++V ++AL+  F K G   +A KLY+ M+ +   PD +++  L+ G C   ++D
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504
           EA ++++ ++  +   N   +  ++    +A R  + ++LFR         + V+YT  I
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564
            G  +    + A I++ QM    V P+  TY ++L   C    ++    + + +  +++E
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498

Query: 565 LDYHT 569
            D +T
Sbjct: 499 PDIYT 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2 SV=1

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 221/444 (49%), Gaps = 13/444 (2%)

Query: 139 LEAFDEMGRFGFT------PNTFARNIVMDVLFKIGRVDLGIKVLKETQL----PNFLSF 188
           +E  D +G FG        P+    + ++  + K+ + DL I   ++ ++     N  ++
Sbjct: 57  IELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTY 116

Query: 189 NIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT 248
           NI +   C+ + +S    ++G M++ G+ P++     LLN FC   RI++A  L+  M+ 
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176

Query: 249 LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSI 308
           +G       +T LI G     +   A  L ++MVQ GC P++VTY +++ G  +     +
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236

Query: 309 AFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS 368
           A + L+ +E+     ++V ++ +ID L K    DDAL+++  +    + P+  T+ SL+S
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 369 TVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP 425
            +C  GR+S   +L+  +   ++  +LV ++AL+  F K G   +A KLY  M+ +   P
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356

Query: 426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLF 485
           + +++  L+ G C   ++ EA  + + ++  +   N   +  +++   +A R  K ++LF
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELF 416

Query: 486 RRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE 545
           R         + V+YT  I G  +    + A +++ QM  + V PN  TY ++L   CK 
Sbjct: 417 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476

Query: 546 RNIKMVKRLLQDVIDARIELDYHT 569
             +     + + +  + +E D +T
Sbjct: 477 GKLAKAMVVFEYLQRSTMEPDIYT 500

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
225443409	659	PREDICTED: putative pentatricopeptide re	0.925	0.905	0.557	0.0
449435890	665	PREDICTED: putative pentatricopeptide re	0.927	0.899	0.515	1e-176
240254086	608	pentatricopeptide repeat-containing prot	0.896	0.950	0.414	1e-129
297844618	741	predicted protein [Arabidopsis lyrata su	0.910	0.792	0.415	1e-126
357147565	623	PREDICTED: putative pentatricopeptide re	0.858	0.889	0.384	1e-115
356573455	1122	PREDICTED: uncharacterized protein LOC10	0.730	0.419	0.459	1e-113
125533078	631	hypothetical protein OsI_34787 [Oryza sa	0.868	0.887	0.381	1e-110
110289653	631	pentatricopeptide, putative, expressed [	0.868	0.887	0.379	1e-109
222613334	706	hypothetical protein OsJ_32592 [Oryza sa	0.868	0.793	0.379	1e-109
357503345	646	Pentatricopeptide repeat-containing prot	0.817	0.815	0.406	1e-108

>gi|225443409|ref|XP_002267486.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Vitis vinifera] gi|297735747|emb|CBI18434.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/608 (55%), Positives = 457/608 (75%), Gaps = 11/608 (1%)

Query: 3   WRC--KRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFP-----IILAPHIVHS 55
           WR   K    +   +T  L  + S  +  Q  +PK     H +FP     ++L   ++ S
Sbjct: 5   WRLFLKTPFHFFNPKTPSLTPLFSLSNHPQ--NPKFTRENH-NFPEKKPGLVLTDQLLES 61

Query: 56  TLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC 115
           TLLNCPSDLIALSFF+WCAKQ ++FH  ++FDHM+ VV RLT +  T+RG++ EL  +GC
Sbjct: 62  TLLNCPSDLIALSFFLWCAKQPNFFHHRRAFDHMVDVVARLTQKSGTIRGVMDELGSIGC 121

Query: 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIK 175
           V+KAQTFLL LRI WRG++YG+V + ++EM  FG+ PN F  N+++DVLFKI R ++ +K
Sbjct: 122 VVKAQTFLLLLRICWRGKLYGLVFDVYEEMIAFGYVPNAFVCNVIIDVLFKIKRGEVALK 181

Query: 176 VLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235
            LKET++ NFL+F+IALCNLC+LND+  V DV+ MM+RKG+ P+V +F ++LNCFCK+GR
Sbjct: 182 FLKETRVSNFLTFSIALCNLCRLNDLVGVGDVLRMMLRKGYCPSVEIFSMVLNCFCKVGR 241

Query: 236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS 295
            AEA+Q+LGLM TLG  +SV  W++LIDG+RR+ ++  AG L EKMV+ GCSPNVVTYT+
Sbjct: 242 FAEAFQVLGLMATLGIPISVTVWSILIDGYRRIGKIGRAGNLLEKMVETGCSPNVVTYTT 301

Query: 296 LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELK 355
           LIKGFME+ M S A   L ++ ++G   DLV +NVLIDCLSK+G YDDAL ++  L + K
Sbjct: 302 LIKGFMESGMVSRALDVLRIMGTKGCDYDLVLYNVLIDCLSKVGRYDDALGIFFSLPKRK 361

Query: 356 LVPDSYTFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKL 414
           +VPDSYTF S+LS +CLS RFSLLPKL   GLEV  DLVV N+LLSYFCKAGFP+ AV+ 
Sbjct: 362 MVPDSYTFSSILSAICLSQRFSLLPKLFSSGLEVHTDLVVCNSLLSYFCKAGFPSLAVEF 421

Query: 415 YNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474
           YN MLD+GF  D YSFVGLL GLCG+ ++DEA+NVY GI++N+  ++AH+HT I+  LI+
Sbjct: 422 YNDMLDRGFMIDQYSFVGLLSGLCGSGRVDEAVNVYSGILVNHSDLDAHIHTVIIGGLIK 481

Query: 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT 534
           AG+ H+A++LF++A+VE+Y LD VSYTVAI GLL+GGRT EA ILY+QMK   + PNA+T
Sbjct: 482 AGKFHRAVRLFKKAMVERYTLDAVSYTVAIYGLLKGGRTGEACILYNQMKEAGLAPNAHT 541

Query: 535 YRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594
           Y ++L  FCKER++KMVK+++Q++I A +EL+  T IR+T F+FK   S S  N L+EM 
Sbjct: 542 YNIILSCFCKERDMKMVKQMIQEMIAAGVELECDTLIRITNFLFKSKFSHSVFNLLIEMW 601

Query: 595 NLGLIPDE 602
             GL+P++
Sbjct: 602 GAGLMPNK 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435890|ref|XP_004135727.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830-like [Cucumis sativus]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/615 (51%), Positives = 429/615 (69%), Gaps = 17/615 (2%)

Query: 1   MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATT----------HQDFP----I 46
           M+WR   ++F  A R QI++T  + +S  + ++P +  T            Q F     +
Sbjct: 1   MIWRYGCNIFQIASR-QIIRTF-AHQSYRRCTTPHINLTKILHNRLDEDIEQKFSENRQV 58

Query: 47  ILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGI 106
           IL   +V++TLLNC SDLIALSFF+WCAKQ ++FH+  +FD+M+ VV+RL  ++ETV GI
Sbjct: 59  ILTNDLVYTTLLNCSSDLIALSFFMWCAKQPNFFHNPAAFDYMVGVVSRLMKQYETVNGI 118

Query: 107 VGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFK 166
           +G L  VG V KAQTFLL LRIYWRG MY +V EAFD M R+GFTPNTFARN++MDVLFK
Sbjct: 119 LGGLESVGNVTKAQTFLLLLRIYWRGGMYDLVFEAFDHMDRYGFTPNTFARNVIMDVLFK 178

Query: 167 IGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL 226
           +GR D+ +KV KET LPNFL+FNI LCNL K  D+  + D    M+R G+ PN   FE++
Sbjct: 179 VGRADVALKVFKETLLPNFLTFNIVLCNLSKTKDLIGIGDTFRCMLRMGYCPNPGTFEVV 238

Query: 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC 286
           LN  CK+GR+AEAYQ+ G+M T G S+SVN WT++IDGF RLRR + A  L +KM ++GC
Sbjct: 239 LNGLCKLGRLAEAYQVWGIMTTFGISMSVNIWTIMIDGFCRLRRTEEASSLVKKMKKSGC 298

Query: 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALD 346
           SPN+VTYT+LIKG++ A+  S AF  L ++ESEG +PDL+ +NVLID L+K   Y+DAL 
Sbjct: 299 SPNIVTYTTLIKGYIYAQRISDAFDVLSIIESEGPSPDLILYNVLIDSLAKNERYNDALS 358

Query: 347 VYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG 406
           ++  L +  ++PD YTF SLL+T+CLS R  LLPKLV G  VE DLV  N+LLSY  KAG
Sbjct: 359 IFLSLHKRNILPDCYTFSSLLNTICLSKRLFLLPKLVDGFLVEVDLVACNSLLSYLGKAG 418

Query: 407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT 466
           F   A++LYN M++ G  PD YS +G+L GLC +R+I EA+ +Y GI++N   V+AH+HT
Sbjct: 419 FAALALELYNNMVNGGLMPDKYSVLGVLTGLCESRRIGEAVRLYNGILLNYTGVDAHIHT 478

Query: 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526
            I+D LI+AG+ H AI++FRR ++E+  LDVVSY+VAIRGLL  GR  EA  LY+ MK  
Sbjct: 479 VIIDGLIKAGKFHSAIRIFRRNLLEENSLDVVSYSVAIRGLLLVGRNTEASNLYNYMKEA 538

Query: 527 AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSS- 585
            + PN +   VML +FCKE+   +VK++LQ++ID  I++  +   RL   I +  + S  
Sbjct: 539 GINPNGHVCNVMLSTFCKEKKFALVKQMLQEMIDLGIKMSRNNFFRLYNAICRSSNGSHL 598

Query: 586 AVNQLVEMCNLGLIP 600
            +  L+EM  LGL+P
Sbjct: 599 VIYLLIEMKVLGLLP 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254086|ref|NP_173127.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806394|sp|Q3EDA9.2|PPR46_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g16830 gi|332191383|gb|AEE29504.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/598 (41%), Positives = 364/598 (60%), Gaps = 20/598 (3%)

Query: 1   MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCAT---THQDFPIILAPHIVHSTL 57
           MLWRC     +  QR +IL T+ SF SIH     +  A    TH +         V+S L
Sbjct: 1   MLWRCN----WVKQRKRILNTL-SFSSIHGQYPREYTAAKPLTHDN---------VYSCL 46

Query: 58  LNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVI 117
              P+DL  L+FF WCAKQ +YFHD ++FDHM+ VV +LT  + ++  I+  L   GC I
Sbjct: 47  RESPADLKTLNFFFWCAKQNNYFHDDRAFDHMVGVVEKLTREYYSIDRIIERLKISGCEI 106

Query: 118 KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVL 177
           K + FLL L I+WRG +Y   +E +  M  FGF PNT A N++MDV FK+  V+  +++ 
Sbjct: 107 KPRVFLLLLEIFWRGHIYDKAIEVYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIF 166

Query: 178 KETQLPNFLSFNIALCNLCKLN---DVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234
           +  +  NF SF+IAL + C      D+  VK V+  M+ +GFYPN   F  +L   C+ G
Sbjct: 167 EGIRFRNFFSFDIALSHFCSRGGRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTG 226

Query: 235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYT 294
            ++EA+Q++GLMI  G S+SVN W++L+ GF R      A  L+ KM+Q GCSPN+VTYT
Sbjct: 227 CVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYT 286

Query: 295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354
           SLIKGF++  M   AF+ L  ++SEG APD+V  N++I   +++G +++A  V+  L + 
Sbjct: 287 SLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKR 346

Query: 355 KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKL 414
           KLVPD YTF S+LS++CLSG+F L+P++  G+  + DLV  N L + F K G+ + A+K+
Sbjct: 347 KLVPDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDLVTGNLLSNCFSKIGYNSYALKV 406

Query: 415 YNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474
            + M  K F  D Y++   L  LC       AI +Y+ I+     ++AH H+AI+D LIE
Sbjct: 407 LSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIE 466

Query: 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT 534
            G+ + A+ LF+R I+EKYPLDVVSYTVAI+GL+   R EEAY L   MK   + PN  T
Sbjct: 467 LGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRT 526

Query: 535 YRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592
           YR ++   CKE+  + V+++L++ I   +ELD +T  ++   + ++    S    + E
Sbjct: 527 YRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLLSRYRGDFSEFRSVFE 584

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844618|ref|XP_002890190.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336032|gb|EFH66449.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/592 (41%), Positives = 361/592 (60%), Gaps = 5/592 (0%)

Query: 1   MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNC 60
           MLWRC     +  QR +IL T+ SF S+H   S +  A         L    V+S L   
Sbjct: 131 MLWRCN----WVKQRKKILNTL-SFSSVHGQYSLENTAGPRSIASKPLTHDNVYSCLRES 185

Query: 61  PSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQ 120
           PSDL  L+FF WCA+Q +YFHD ++FDHM+ VV +LT  + ++  I+ EL   GC IK +
Sbjct: 186 PSDLKTLNFFFWCARQNNYFHDDRAFDHMVGVVEKLTREYYSIDRIIEELKVYGCEIKPR 245

Query: 121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKET 180
            FLL L I+WRG +Y   ++ +  M  FG+ PNT A N++MDV FK+  V+  +++ +  
Sbjct: 246 VFLLLLEIFWRGHIYDKAIQVYTGMSSFGYVPNTRAMNMMMDVNFKVNLVNGALEIFEGI 305

Query: 181 QLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY 240
           +  NF SF+IAL + C   D+  VK V+  M+ +GFYPN   F  +L   C+ G +AEA+
Sbjct: 306 RFRNFFSFDIALSHFCSRGDLVCVKIVLKRMIGEGFYPNTERFGQILRLCCRTGCVAEAF 365

Query: 241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300
           Q++GLMI  G S+SVN W++L+ GF R      A  L+ KM+Q  C PN+VTYTSLIKGF
Sbjct: 366 QVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQISCFPNLVTYTSLIKGF 425

Query: 301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDS 360
           ++  M   AF+ L  ++SEG APD+V  N++I   +++G +++A +V+  L + KLVPD 
Sbjct: 426 VDLGMVEEAFTVLSKVQSEGLAPDIVLCNLMIHTFTRLGRFEEARNVFTSLKKRKLVPDQ 485

Query: 361 YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD 420
           YTF S+LS++CLSG F L+P++  G+  + DLV  N L + F K G+ + A+K+   M +
Sbjct: 486 YTFVSILSSLCLSGEFDLVPRITHGIGTDFDLVTGNLLSNCFSKIGYYSYALKVLGIMSN 545

Query: 421 KGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHK 480
           K    D Y++   L  LC       AI +Y+ I   N  + AH H+AI+D LIE GR + 
Sbjct: 546 KDLALDCYTYTVYLTALCRGGAPRAAIKMYEIITRENKHLGAHFHSAIIDSLIELGRYNT 605

Query: 481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL 540
           AI LF+R I+EKYPLDVVS+TVAI+GL+   R +EA  L S MK   + PN  TYR ++ 
Sbjct: 606 AIHLFKRCILEKYPLDVVSFTVAIKGLMRAKRIDEACSLCSDMKENGIFPNRRTYRTIIS 665

Query: 541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592
             CKE+  + VK++L++ I+  +ELD +T  ++   + ++    S    + E
Sbjct: 666 GLCKEKETEKVKKILRECIEEGVELDPNTKFKVFSLLSRYRGDFSEFRSVFE 717

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147565|ref|XP_003574395.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830-like [Brachypodium distachyon]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/554 (38%), Positives = 323/554 (58%)

Query: 45  PIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVR 104
           P  L+P +V + +  CPSD +ALSFF+WCA++  YFH   SFD ++   TRL  R     
Sbjct: 27  PPPLSPRLVDAAVSRCPSDALALSFFLWCARRPAYFHPPSSFDRVLPAATRLASRLPAAP 86

Query: 105 GIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL 164
            ++ EL  +GC I   TFLL LR+YWRG +Y +VL  FD+M  +GF  N FARNI +DVL
Sbjct: 87  ELLCELQNLGCPISPHTFLLLLRLYWRGGLYPLVLNLFDQMPLWGFHHNIFARNIALDVL 146

Query: 165 FKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFE 224
            + GRVD  +  +++   PN+L++ I L +LC+  D S V+     M+++G  P+     
Sbjct: 147 LRTGRVDAALIFMQDNPSPNYLTYAIVLTHLCRAGDWSGVRTCFRAMLQQGLIPSSASLA 206

Query: 225 ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQN 284
            +  C  K G ++E  QL    +  G  ++   W+ LI       RLD A  + E MV+ 
Sbjct: 207 SVFACCSKAGTMSELLQLFSYALVSGRQITSVMWSCLIARICSEGRLDEACIILENMVRC 266

Query: 285 GCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDA 344
           G SP VVTYT L++G   A         L  + S G  PDLV +NVL+DC+ K   YD+A
Sbjct: 267 GSSPTVVTYTPLVRGLFRAGRHDKVSELLGSMASNGCNPDLVLYNVLMDCMMKERRYDEA 326

Query: 345 LDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCK 404
           LD+Y  L + ++ PD+YT  +L+  + LS    LLP+L+ G ++  DLV  N++LS  CK
Sbjct: 327 LDIYLNLHQSQIKPDAYTLSTLVHVLQLSHNIDLLPRLILGSDISYDLVACNSVLSALCK 386

Query: 405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHV 464
           +GFP++A++ Y   +  G  PD+YS+VGLL  LC   +ID AINVY+ ++ +NP  +A++
Sbjct: 387 SGFPSEALQFYIDKIGLGIRPDSYSYVGLLDSLCQLGRIDHAINVYRSVLASNPDSDAYI 446

Query: 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524
           H++I+  L+   + + A  +FR A+ + Y LDVV YT+ + GL      EEA  L+ +MK
Sbjct: 447 HSSILRGLVSRRQNNMAFAIFREAVRQNYALDVVCYTIVLHGLFRAHLIEEACDLFDKMK 506

Query: 525 HIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS 584
           H  + PN  TY VML   C+ +++  V +LL ++    +++D  +   +   + K    S
Sbjct: 507 HSGIAPNTCTYNVMLRGLCRTQDMHAVTQLLGEMECTNVQMDSISFNVVVVLLVKLQHIS 566

Query: 585 SAVNQLVEMCNLGL 598
           SA+  + EM NLG+
Sbjct: 567 SAIGLIREMHNLGM 580

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573455|ref|XP_003554875.1| PREDICTED: uncharacterized protein LOC100816100 [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/490 (45%), Positives = 312/490 (63%), Gaps = 19/490 (3%)

Query: 56  TLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC 115
           +L  CPSDLIALS F+W A++R   HD  +FD +++V+ RLT R++TV  I+  L  +GC
Sbjct: 37  SLSRCPSDLIALSLFLWSAQRRR--HDSFAFDRIVTVLLRLTHRYDTVPAILSHLETIGC 94

Query: 116 --VIKAQTFLLFLRIYWRGEMYGMVLEAFDEM-GRFGFTPNTFARNIVMDVLFKIGRVDL 172
             +    + L+ LRIY R  MY M+LEA+  +   + F P+TFARN+VMD LF++G   L
Sbjct: 95  ASLTNPVSQLVLLRIYSRAGMYAMLLEAYHHLQASYAFVPDTFARNLVMDALFRVGHSHL 154

Query: 173 GI----KVLKETQLPNFLSFNIALCNLCKLNDV------SNVKDVIGMMVRKGFYPNVRM 222
            +     +   T  PNF +F+I L +L KLN+        ++  ++ +++  G+ P+   
Sbjct: 155 ALTLTLSLFSHTHPPNFFTFHILLLHLSKLNNNNLNLYLPHIARILRLLLWAGYSPSPLT 214

Query: 223 FEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282
           F++LLN  CK+    +AYQLL LM  LG + SVN WT+LI  + +  RL +A  L+  M+
Sbjct: 215 FQMLLNSLCKINAFPQAYQLLALMTALGINFSVNIWTILIHNYCKFGRLRLANNLFHNML 274

Query: 283 QNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYD 342
           Q GCSPNVVTYT L K FM++ M + AF   +++ S G +PDL+  NVLIDCLSK G   
Sbjct: 275 QTGCSPNVVTYTILFKAFMQSNMPTPAFRLFNIMLSSGQSPDLILCNVLIDCLSKAGRCQ 334

Query: 343 DALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSY 401
           DA+ V+  L E  L PDSYTF SLLST+C S  F LLPKLV     ++ADLV  NALLS 
Sbjct: 335 DAIQVFLSLSERNLKPDSYTFASLLSTICRSRMFYLLPKLVLVSRHIDADLVFCNALLSS 394

Query: 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVN 461
             KA  P+ AV  Y+ M+D+GF PD Y+F GLL  LC A ++D+A+NVY G+VM+    +
Sbjct: 395 LTKADLPSLAVGFYDHMIDEGFVPDKYTFAGLLSALCCAGRVDKAVNVYHGVVMSYHDTD 454

Query: 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILY- 520
           AH+HT I+  L++ G+ HKA+ + R A++ KYPLD V+YTV I  LL G RT+EA  L  
Sbjct: 455 AHIHTVIIVGLLKTGKFHKAVSVLRFAVMNKYPLDTVAYTVGICALLRGRRTQEACTLQL 514

Query: 521 --SQMKHIAV 528
               +KH AV
Sbjct: 515 VIRYVKHRAV 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125533078|gb|EAY79643.1| hypothetical protein OsI_34787 [Oryza sativa Indica Group]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 321/564 (56%), Gaps = 4/564 (0%)

Query: 53  VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELAR 112
           V +T+  CPSD +A++FF+WCA+   YFH   SFD ++    RL  R  T   I+ +L  
Sbjct: 42  VDATVSRCPSDALAITFFLWCARCPAYFHPPSSFDRLLPAAARLASRLRTAPAILHQLRA 101

Query: 113 VGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDL 172
           +GC I+  TFLL LR+YWRG +Y +VL+ FD+M  +GF PN FARN+V+DVL +      
Sbjct: 102 LGCPIRPHTFLLLLRLYWRGGIYPLVLQLFDQMPLWGFHPNAFARNVVLDVLLRTRHHHS 161

Query: 173 GIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232
            +  L++   PN+L++ I L +LC+  +   V+     M+ +GF P+      +  C  K
Sbjct: 162 ALCFLRDNPSPNYLTYAILLTHLCRSGNWPGVRACFLAMLHQGFLPSAASLNAVFACCTK 221

Query: 233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT 292
           +   +E  QLLG  +  G  L+   WT LI    R  +LD A  +  KM+ +G  P VVT
Sbjct: 222 LAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRMLAKMLASGSPPTVVT 281

Query: 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL 352
           YT +++    A    IA      + S   +PDLV HNVL+DC++K   YD AL VY  L 
Sbjct: 282 YTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKDKRYDAALGVYLNLH 341

Query: 353 ELKLVPDSYTFCSLLSTVCLSGRFSLLPKL-VCGLEVEADLVVYNALLSYFCKAGFPNQA 411
           E ++ PD+YT  +L+  + LS   SLLP+L +   ++  DLV  N++L+  CK+GFP+QA
Sbjct: 342 ESQMKPDAYTLSTLVRALHLSRNVSLLPRLFLDSADIPYDLVACNSVLNALCKSGFPSQA 401

Query: 412 VKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471
           V+ +  M+     PD+YS+VGLL  LC   +ID AINVY  IV ++P  NA+VH AI+  
Sbjct: 402 VQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHAINVYHSIVSSDPDSNAYVHAAILCG 461

Query: 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531
           L++ G    A+ +   A+ + Y LD V YTV + GLL+    EEA +L+ +MK   +  N
Sbjct: 462 LVKKGHNRMALMILNEAVRQNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASN 521

Query: 532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLV 591
             TY +ML   C+ R+   +K  L+++  + +E+D  +   L  F+ K    SSA   + 
Sbjct: 522 TCTYNIMLRGLCRTRDTHALKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVR 581

Query: 592 EMCNLGLIPDEMWRKLGLLSDETM 615
           EM NLG+   E+  K   L  ++M
Sbjct: 582 EMVNLGM---ELSAKTSSLISQSM 602

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110289653|gb|AAP55169.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 320/564 (56%), Gaps = 4/564 (0%)

Query: 53  VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELAR 112
           V +T+  CPSD +A++FF+WCA+   YFH   SFD ++    RL  R  T   I+ +L  
Sbjct: 42  VDATVSRCPSDALAITFFLWCARCPAYFHPPSSFDRLLPAAARLASRLRTAPAILHQLRA 101

Query: 113 VGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDL 172
           +GC I+  TFLL LR+YWRG +Y +VL+ FD+M  +GF PN FARN+V+DVL +      
Sbjct: 102 LGCPIRPHTFLLLLRLYWRGGIYPLVLQLFDQMPLWGFHPNAFARNVVLDVLLRTRHHHS 161

Query: 173 GIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232
            +  L++   PN+L++ I L +LC+  +   V+     M+ +GF P+      +  C  K
Sbjct: 162 ALCFLRDNPSPNYLTYAILLTHLCRSGNWPGVRACFLAMLHQGFLPSAASLNAVFACCTK 221

Query: 233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT 292
           +   +E  QLLG  +  G  L+   WT LI    R  +LD A  +  KM+ +G  P VVT
Sbjct: 222 LAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRMLAKMLASGSPPTVVT 281

Query: 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL 352
           YT +++    A    IA      + S   +PDLV HNVL+DC++K   YD AL VY  L 
Sbjct: 282 YTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKDKRYDAALGVYLNLH 341

Query: 353 ELKLVPDSYTFCSLLSTVCLSGRFSLLPKL-VCGLEVEADLVVYNALLSYFCKAGFPNQA 411
           E ++ PD+YT  +L+  + LS   SLLP+L +   ++  DLV  N++L+   K+GFP+QA
Sbjct: 342 ESQMKPDAYTLSTLVRALHLSRNVSLLPRLFLDSADIPYDLVACNSVLNALRKSGFPSQA 401

Query: 412 VKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471
           V+ +  M+     PD+YS+VGLL  LC   +ID AINVY  IV ++P  NA+VH AI+  
Sbjct: 402 VQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHAINVYHSIVSSDPDSNAYVHAAILCG 461

Query: 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531
           L++ G    A+ +   A+ + Y LD V YTV + GLL+    EEA +L+ +MK   +  N
Sbjct: 462 LVKKGHNRMALMILNEAVRQNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASN 521

Query: 532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLV 591
             TY +ML   C+ R+   +K  L+++  + +E+D  +   L  F+ K    SSA   + 
Sbjct: 522 TCTYNIMLRGLCRTRDTHALKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVR 581

Query: 592 EMCNLGLIPDEMWRKLGLLSDETM 615
           EM NLG+   E+  K   L  ++M
Sbjct: 582 EMVNLGM---ELSAKTSSLISQSM 602

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222613334|gb|EEE51466.1| hypothetical protein OsJ_32592 [Oryza sativa Japonica Group]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 320/564 (56%), Gaps = 4/564 (0%)

Query: 53  VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELAR 112
           V +T+  CPSD +A++FF+WCA+   YFH   SFD ++    RL  R  T   I+ +L  
Sbjct: 117 VDATVSRCPSDALAITFFLWCARCPAYFHPPSSFDRLLPAAARLASRLRTAPAILHQLRA 176

Query: 113 VGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDL 172
           +GC I+  TFLL LR+YWRG +Y +VL+ FD+M  +GF PN FARN+V+DVL +      
Sbjct: 177 LGCPIRPHTFLLLLRLYWRGGIYPLVLQLFDQMPLWGFHPNAFARNVVLDVLLRTRHHHS 236

Query: 173 GIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232
            +  L++   PN+L++ I L +LC+  +   V+     M+ +GF P+      +  C  K
Sbjct: 237 ALCFLRDNPSPNYLTYAILLTHLCRSGNWPGVRACFLAMLHQGFLPSAASLNAVFACCTK 296

Query: 233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT 292
           +   +E  QLLG  +  G  L+   WT LI    R  +LD A  +  KM+ +G  P VVT
Sbjct: 297 LAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRMLAKMLASGSPPTVVT 356

Query: 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL 352
           YT +++    A    IA      + S   +PDLV HNVL+DC++K   YD AL VY  L 
Sbjct: 357 YTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKDKRYDAALGVYLNLH 416

Query: 353 ELKLVPDSYTFCSLLSTVCLSGRFSLLPKL-VCGLEVEADLVVYNALLSYFCKAGFPNQA 411
           E ++ PD+YT  +L+  + LS   SLLP+L +   ++  DLV  N++L+   K+GFP+QA
Sbjct: 417 ESQMKPDAYTLSTLVRALHLSRNVSLLPRLFLDSADIPYDLVACNSVLNALRKSGFPSQA 476

Query: 412 VKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471
           V+ +  M+     PD+YS+VGLL  LC   +ID AINVY  IV ++P  NA+VH AI+  
Sbjct: 477 VQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHAINVYHSIVSSDPDSNAYVHAAILCG 536

Query: 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531
           L++ G    A+ +   A+ + Y LD V YTV + GLL+    EEA +L+ +MK   +  N
Sbjct: 537 LVKKGHNRMALMILNEAVRQNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASN 596

Query: 532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLV 591
             TY +ML   C+ R+   +K  L+++  + +E+D  +   L  F+ K    SSA   + 
Sbjct: 597 TCTYNIMLRGLCRTRDTHALKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVR 656

Query: 592 EMCNLGLIPDEMWRKLGLLSDETM 615
           EM NLG+   E+  K   L  ++M
Sbjct: 657 EMVNLGM---ELSAKTSSLISQSM 677

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503345|ref|XP_003621961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496976|gb|AES78179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/553 (40%), Positives = 330/553 (59%), Gaps = 26/553 (4%)

Query: 61  PSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCV---- 116
           P DLI L  F+  +K   +     + + M+ V  R+   ++T + I+ +L  +G +    
Sbjct: 16  PFDLITLGSFLRSSKPNSF-----AINQMLPVFARVIHHYKTHQTILSKLVSIGSINLST 70

Query: 117 --IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF-GF--TPNTFARNIVMDVLFKIGRVD 171
             I    F+  LRI+ R   + ++++  D M  F GF  +  TFA N++M+ LFK  +  
Sbjct: 71  ININPNPFINLLRIFSRSGNHELLIKTCDYMVEFHGFQISSKTFASNLLMESLFKASQPK 130

Query: 172 LGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFC 231
              K+  ET+ PNFL+FNIAL +L   ND+ NVK V+  M+R  + PN   F  +LN FC
Sbjct: 131 NAFKIFGETRSPNFLTFNIALFHLSNFNDIVNVKYVLREMLRLRYCPNASTFSAVLNAFC 190

Query: 232 KMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV 291
           KM    + YQ+LGLMI LG  LSVN WTVLI  F +L +LD+A  L++KM+Q+ CSPN V
Sbjct: 191 KMNAFRQVYQILGLMIGLGIELSVNVWTVLIHHFCKLGKLDVADDLFDKMIQSCCSPNSV 250

Query: 292 TYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGL 351
           TYT LIK  ME+   ++A      + S G  PDLVF+N+LIDCLSK G +++A+ V++  
Sbjct: 251 TYTPLIKAVMESDDVTLALRLEQKMNSVGIVPDLVFYNMLIDCLSKSGMHEEAIRVFE-- 308

Query: 352 LELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE-VEADLVVYNALLSYFCKAGFPNQ 410
            +    PD YTF SLLS +C S +F LLPKLV   + +  DLV  NALL  + KAG+ ++
Sbjct: 309 -QKNFKPDKYTFTSLLSAICRSEQFDLLPKLVQHCKHISRDLVFCNALLISYVKAGYSSR 367

Query: 411 AVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470
           A++LY  M+ +GF PD Y+F GLL  LC   + DEA+ V++ + M++   + H+HT I +
Sbjct: 368 ALELYERMISEGFKPDKYTFAGLLSALCAENRNDEAVKVWRAVTMDHTD-DVHIHTVISN 426

Query: 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP 530
            L +AG+  +A  +F    V+KYPLD ++Y V I   L  GRT EA  LY QMK   + P
Sbjct: 427 ELKKAGQYEQASDVFISEAVKKYPLDSIAYGVGIDAHLRSGRTLEARTLYDQMKKNGLEP 486

Query: 531 NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQL 590
           N  T+ ++L    + ++++MVK+LLQD+ID+RI+L       L KF   +       N L
Sbjct: 487 NFQTFNMILFRSLEVKDLQMVKQLLQDMIDSRIKLSDRNFFNLRKFQCNW-------NLL 539

Query: 591 VEMCNLGLIPDEM 603
            EM +LGL+  ++
Sbjct: 540 TEMRDLGLLSSKV 552

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
TAIR|locus:2015671	608	AT1G16830 "AT1G16830" [Arabido	0.900	0.955	0.416	3.6e-121
TAIR|locus:2031301	577	AT1G63400 [Arabidopsis thalian	0.652	0.729	0.269	2.4e-44
TAIR|locus:2203916	634	AT1G62590 [Arabidopsis thalian	0.675	0.687	0.263	2e-43
TAIR|locus:2015218	590	AT1G63070 [Arabidopsis thalian	0.632	0.691	0.262	2.2e-43
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.668	0.701	0.253	4.5e-43
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.843	0.721	0.237	4.7e-43
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.767	0.785	0.227	1.4e-42
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.643	0.757	0.254	1.1e-41
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.768	0.787	0.226	1.2e-40
TAIR|locus:2174165	504	AT5G16640 [Arabidopsis thalian	0.581	0.744	0.267	1.7e-40

TAIR|locus:2015671 AT1G16830 "AT1G16830" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 248/595 (41%), Positives = 363/595 (61%)

Query:     1 MLWRCKRSLFYTAQRTQILKTIISFKSIHQISSPKVCATTHQDFPIILAPHIVHSTLLNC 60
             MLWRC     +  QR +IL T+ SF SIH    P+         P  L    V+S L   
Sbjct:     1 MLWRCN----WVKQRKRILNTL-SFSSIHG-QYPREYTAAK---P--LTHDNVYSCLRES 49

Query:    61 PSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQ 120
             P+DL  L+FF WCAKQ +YFHD ++FDHM+ VV +LT  + ++  I+  L   GC IK +
Sbjct:    50 PADLKTLNFFFWCAKQNNYFHDDRAFDHMVGVVEKLTREYYSIDRIIERLKISGCEIKPR 109

Query:   121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKET 180
              FLL L I+WRG +Y   +E +  M  FGF PNT A N++MDV FK+  V+  +++ +  
Sbjct:   110 VFLLLLEIFWRGHIYDKAIEVYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIFEGI 169

Query:   181 QLPNFLSFNIALCNLCKLN---DVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIA 237
             +  NF SF+IAL + C      D+  VK V+  M+ +GFYPN   F  +L   C+ G ++
Sbjct:   170 RFRNFFSFDIALSHFCSRGGRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVS 229

Query:   238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLI 297
             EA+Q++GLMI  G S+SVN W++L+ GF R      A  L+ KM+Q GCSPN+VTYTSLI
Sbjct:   230 EAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLI 289

Query:   298 KGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLV 357
             KGF++  M   AF+ L  ++SEG APD+V  N++I   +++G +++A  V+  L + KLV
Sbjct:   290 KGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLV 349

Query:   358 PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNT 417
             PD YTF S+LS++CLSG+F L+P++  G+  + DLV  N L + F K G+ + A+K+ + 
Sbjct:   350 PDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDLVTGNLLSNCFSKIGYNSYALKVLSI 409

Query:   418 MLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR 477
             M  K F  D Y++   L  LC       AI +Y+ I+     ++AH H+AI+D LIE G+
Sbjct:   410 MSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGK 469

Query:   478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRV 537
              + A+ LF+R I+EKYPLDVVSYTVAI+GL+   R EEAY L   MK   + PN  TYR 
Sbjct:   470 YNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRT 529

Query:   538 MLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592
             ++   CKE+  + V+++L++ I   +ELD +T  ++   + ++    S    + E
Sbjct:   530 IISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLLSRYRGDFSEFRSVFE 584

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 118/438 (26%), Positives = 223/438 (50%)

Query:   131 RGEMYGMVLEAFDEMGRFGFT------PNTFARNIVMDVLFKIGRVDLGIKVLKETQL-- 182
             R  ++ M L+  D +G FG        P+ F  N ++  + K+ + DL I + ++ Q   
Sbjct:    58 RNGLHSMKLD--DAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG 115

Query:   183 --PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY 240
                N  ++NI +   C+ + +S    ++G M++ G+ P++     LLN +C   RI++A 
Sbjct:   116 ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query:   241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300
              L+  M+ +G       +T LI G     +   A  L ++MVQ GC PN+VTY  ++ G 
Sbjct:   176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235

Query:   301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDS 360
              +     +AF+ L+ +E+     ++V ++ +ID L K    DDAL+++  +    + P+ 
Sbjct:   236 CKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 295

Query:   361 YTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNT 417
              T+ SL+S +C   R+S   +L+  +   ++  ++V +NAL+  F K G   +A KLY+ 
Sbjct:   296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355

Query:   418 MLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR 477
             M+ +   PD +++  L+ G C   ++DEA ++++ ++  +   N   +  +++   +A R
Sbjct:   356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415

Query:   478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRV 537
               + ++LFR         + V+YT  I G  +    + A +++ QM    V PN  TY  
Sbjct:   416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475

Query:   538 MLLSFCKERNIKMVKRLL 555
             +L   CK  N K+ K ++
Sbjct:   476 LLDGLCK--NGKLEKAMV 491

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 2.0e-43, P = 2.0e-43
 Identities = 119/451 (26%), Positives = 222/451 (49%)

Query:   131 RGEMYGMVLEAFDEMGRFGFT------PNTFARNIVMDVLFKIGRVD----LGIKVLKET 180
             R  ++ M L+  D +G FG        P+    N ++  + K+ + D    LG K+ +  
Sbjct:    58 RNGLHDMKLD--DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLE 115

Query:   181 QLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY 240
              +    ++NI +   C+ + +S    ++G M++ G+ P++     LLN +C   RI++A 
Sbjct:   116 IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query:   241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300
              L+  M+ +G       +T LI G     +   A  L ++MVQ GC PN+VTY  ++ G 
Sbjct:   176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235

Query:   301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDS 360
              +     +A + L+ +E+     D+V  N +ID L K    DDAL+++  +    + P+ 
Sbjct:   236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295

Query:   361 YTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNT 417
              T+ SL+S +C  GR+S   +L+  +   ++  +LV +NAL+  F K G   +A KLY+ 
Sbjct:   296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355

Query:   418 MLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR 477
             M+ +   PD +++  L+ G C   ++D+A  +++ +V  +   +   +  ++    ++ R
Sbjct:   356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415

Query:   478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRV 537
                  +LFR         D V+YT  I+GL   G  + A  ++ QM    VPP+  TY +
Sbjct:   416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475

Query:   538 MLLSFCKERNIKMVKRLLQDVIDARIELDYH 568
             +L   C    ++    +   +  + I+LD +
Sbjct:   476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 109/416 (26%), Positives = 211/416 (50%)

Query:   142 FDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCK 197
             F +M +    P+    + ++  + K+ + DL I + ++ Q      N  +++I +   C+
Sbjct:    63 FGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCR 122

Query:   198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA 257
              + +S    ++G M++ G+ P++     LLN FC   RI+EA  L+  M+ +G       
Sbjct:   123 RSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVT 182

Query:   258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE 317
             +T L+ G  +  +   A  L E+MV  GC P++VTY ++I G  +     +A + L+ +E
Sbjct:   183 FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME 242

Query:   318 SEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS 377
                   D+V +N +ID L K    DDA D+++ +    + PD +T+  L+S +C  GR+S
Sbjct:   243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302

Query:   378 LLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTML-DKGFTPDNYSFVGL 433
                +L+  +    +  DLV +NAL+  F K G   +A KLY+ M+  K   PD  ++  L
Sbjct:   303 DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTL 362

Query:   434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY 493
             ++G C  ++++E + V++ +       N   +T ++    +A  C  A  +F++ + +  
Sbjct:   363 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 422

Query:   494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIK 549
               D+++Y + + GL   G  E A +++  M+   +  +  TY  M+ + CK   ++
Sbjct:   423 HPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 111/438 (25%), Positives = 221/438 (50%)

Query:   139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL----PNFLSFNIALCN 194
             ++ F EM +    P+    + ++  + K+ + DL I   ++ ++     N  ++NI +  
Sbjct:    50 VDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINC 109

Query:   195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS 254
             LC+ + +S    ++G M++ G+ P++     LLN FC   RI+EA  L+  M+ +G    
Sbjct:   110 LCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 169

Query:   255 VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD 314
                +T L+ G  +  +   A  L E+MV  GC P++VTY ++I G  +     +A + L+
Sbjct:   170 TVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 229

Query:   315 MLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSG 374
              +E      D+V ++ +ID L K    DDAL+++  +    + PD +T+ SL+S +C  G
Sbjct:   230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 289

Query:   375 RFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV 431
             R+S   +L+  +   ++  ++V +N+L+  F K G   +A KL++ M+ +   P+  ++ 
Sbjct:   290 RWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349

Query:   432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE 491
              L+ G C   ++DEA  ++  +V  +   +   +  +++   +A +    ++LFR     
Sbjct:   350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409

Query:   492 KYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMV 551
                 + V+YT  I G  +    + A +++ QM    V PN  TY  +L   CK   ++  
Sbjct:   410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469

Query:   552 KRLLQDVIDARIELDYHT 569
               + + +  +++E D +T
Sbjct:   470 MVVFEYLQKSKMEPDIYT 487

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 4.7e-43, P = 4.7e-43
 Identities = 132/556 (23%), Positives = 266/556 (47%)

Query:    56 TLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC 115
             +L + P D  AL  F   +K+ ++  +   ++ ++  + R +G F+ ++ I+ ++    C
Sbjct:    56 SLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGR-SGSFDDMKKILEDMKSSRC 114

Query:   116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEM-GRFGFTPNTFARNIVMDVLF---KIGRVD 171
              +   TFL+ +  Y + E+   +L   D M   FG  P+T   N ++++L     +  V+
Sbjct:   115 EMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVE 174

Query:   172 LGIKVLKETQL-PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCF 230
             +    +    + P+  +FN+ +  LC+ + +     ++  M   G  P+ + F  ++  +
Sbjct:   175 ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234

Query:   231 CKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRL-DMAGYLWEKMVQNGCSPN 289
              + G +  A ++   M+  G S S  +  V++ GF +  R+ D   ++ E   Q+G  P+
Sbjct:   235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query:   290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYD 349
               T+ +L+ G  +A     A   +D++  EG+ PD+  +N +I  L K+G   +A++V D
Sbjct:   295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354

Query:   350 GLLELKLVPDSYTFCSLLSTVCLSGRF---SLLPKLVCGLEVEADLVVYNALLSYFCKAG 406
              ++     P++ T+ +L+ST+C   +    + L +++    +  D+  +N+L+   C   
Sbjct:   355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query:   407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT 466
                 A++L+  M  KG  PD +++  L+  LC   K+DEA+N+ + + ++  A +   + 
Sbjct:   415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query:   467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526
              ++D   +A +  +A ++F    V     + V+Y   I GL +  R E+A  L  QM   
Sbjct:   475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534

Query:   527 AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA 586
                P+ YTY  +L  FC+  +IK    ++Q +     E D  T   L   + K      A
Sbjct:   535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

Query:   587 VNQL--VEMCNLGLIP 600
                L  ++M  + L P
Sbjct:   595 SKLLRSIQMKGINLTP 610

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 1.4e-42, P = 1.4e-42
 Identities = 115/506 (22%), Positives = 242/506 (47%)

Query:    53 VHSTLLNCPSDLIALSFFIWCAKQ-RDYFHDVQSFDHMISVVTRLTG-RFETVRGIVGEL 110
             VH +LL       A   F  C+   RD F  V+ +D+    + RL   + +    + G++
Sbjct:    15 VHRSLLGKGKCGTAPPSFSHCSFWVRD-FSGVR-YDYRKISINRLNDLKLDDAVNLFGDM 72

Query:   111 ARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRV 170
              +         F   L    +   + +V+   ++M   G + N +  +I+++   +  ++
Sbjct:    73 VKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQL 132

Query:   171 DLGIKVL-KETQL---PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL 226
              L + VL K  +L   P+ ++ N  L   C  N +S+   ++G MV  G+ P+   F  L
Sbjct:   133 SLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTL 192

Query:   227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC 286
             ++   +  R +EA  L+  M+  G    +  + ++++G  +   +D+A  L +KM Q   
Sbjct:   193 IHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKI 252

Query:   287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALD 346
              P VV Y ++I      K  + A +    ++++G  P++V +N LI CL   G + DA  
Sbjct:   253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query:   347 VYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFC 403
             +   ++E K+ P+  TF +L+      G+     KL   +    ++ D+  Y++L++ FC
Sbjct:   313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372

Query:   404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH 463
                  ++A  ++  M+ K   P+  ++  L++G C A+++DE + +++ +       N  
Sbjct:   373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query:   464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523
              +T ++    +A  C  A  +F++ + +    D+++Y++ + GL   G+ E A +++  +
Sbjct:   433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492

Query:   524 KHIAVPPNAYTYRVMLLSFCKERNIK 549
             +   + P+ YTY +M+   CK   ++
Sbjct:   493 QRSKMEPDIYTYNIMIEGMCKAGKVE 518

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 108/424 (25%), Positives = 218/424 (51%)

Query:   139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFL-SFNIALCN 194
             ++ F +M +    P+    N ++  + K+ + D+ I + K+ +   + N L +FNI +  
Sbjct:    70 IDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINC 129

Query:   195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS 254
              C    VS    ++G M++ G+ P+      L+N FC+  R+++A  L+  M+ +G    
Sbjct:   130 FCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD 189

Query:   255 VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFL- 313
             + A+  +ID   + +R++ A   ++++ + G  PNVVTYT+L+ G   +  +S A   L 
Sbjct:   190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249

Query:   314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373
             DM++ +   P+++ ++ L+D   K G   +A ++++ ++ + + PD  T+ SL++ +CL 
Sbjct:   250 DMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLH 308

Query:   374 GRF---SLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF 430
              R    + +  L+      AD+V YN L++ FCKA      +KL+  M  +G   +  ++
Sbjct:   309 DRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 368

Query:   431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV 490
               L++G   A  +D+A   +  +     + +   +  ++  L + G   KA+ +F     
Sbjct:   369 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 428

Query:   491 EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550
              +  LD+V+YT  IRG+ + G+ EEA+ L+  +    + P+  TY  M+   C +  +  
Sbjct:   429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488

Query:   551 VKRL 554
             V+ L
Sbjct:   489 VEAL 492

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 116/513 (22%), Positives = 239/513 (46%)

Query:    49 APHIVHSTLL---NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTR-LTG-RFETV 103
             A   VH +L+   N  +   + SFF W    R  F    S+D+   +    L+  + +  
Sbjct:    11 AKRFVHRSLVVRGNAATVSPSFSFF-W----RRAFSGKTSYDYREKLSRNGLSELKLDDA 65

Query:   104 RGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDV 163
               + GE+ +         F   L    +   + +V+   ++M   G   N +  +I+++ 
Sbjct:    66 VALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINC 125

Query:   164 LFKIGRVDLGIKVL-KETQL---PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN 219
               +  ++ L + VL K  +L   PN ++ +  L   C    +S    ++  M   G+ PN
Sbjct:   126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query:   220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWE 279
                F  L++      + +EA  L+  M+  G    +  + V+++G  +    D+A  L  
Sbjct:   186 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query:   280 KMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMG 339
             KM Q    P V+ Y ++I G  + K    A +    +E++G  P++V ++ LI CL   G
Sbjct:   246 KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305

Query:   340 SYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL---EVEADLVVYN 396
              + DA  +   ++E K+ PD +TF +L+      G+     KL   +    ++  +V Y+
Sbjct:   306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYS 365

Query:   397 ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN 456
             +L++ FC     ++A +++  M+ K   PD  ++  L++G C  ++++E + V++ +   
Sbjct:   366 SLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 425

Query:   457 NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516
                 N   +  ++  L +AG C  A ++F+  + +  P ++++Y   + GL + G+ E+A
Sbjct:   426 GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485

Query:   517 YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIK 549
              +++  ++   + P  YTY +M+   CK   ++
Sbjct:   486 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 101/378 (26%), Positives = 191/378 (50%)

Query:   170 VDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNC 229
             +DL   +++   LP+   F+  L  + K+     V  +   M   G   N+    ILLNC
Sbjct:    66 LDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNC 125

Query:   230 FCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN 289
             FC+  +++ A   LG MI LG   S+  +  L++GF R  R+  A Y++++MV  G  PN
Sbjct:   126 FCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPN 185

Query:   290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYD 349
             VV Y ++I G  ++K    A   L+ +E +G  PD+V +N LI  L   G + DA  +  
Sbjct:   186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245

Query:   350 GLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKL---VCGLEVEADLVVYNALLSYFCKAG 406
              + + ++ PD +TF +L+      GR S   +    +    ++ D+V Y+ L+   C   
Sbjct:   246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305

Query:   407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT 466
               ++A +++  M+ KG  PD  ++  L+ G C ++K++  + ++  +       N   +T
Sbjct:   306 RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query:   467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526
              ++     AG+ + A ++FRR +      ++++Y V + GL + G+ E+A ++ + M+  
Sbjct:   366 ILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN 425

Query:   527 AVPPNAYTYRVMLLSFCK 544
              +  +  TY +++   CK
Sbjct:   426 GMDADIVTYNIIIRGMCK 443

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EDA9	PPR46_ARATH	No assigned EC number	0.4147	0.8961	0.9506	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	645
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-20
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.004
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 95.3 bits (237), Expect = 3e-20
 Identities = 85/359 (23%), Positives = 147/359 (40%), Gaps = 37/359 (10%)

Query: 218 PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL 277
           P +  F +L++       I  A ++L L+   G       +T LI    +  ++D    +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 278 WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337
           + +MV  G   NV T+ +LI G   A   + AF    ++ S+   PD V  N LI    +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 338 MGSYDDALDVYDGLLELK-----LVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL 392
            G+ D A DV   L E+K     + PD  T  +L+     +G            +V+   
Sbjct: 555 SGAVDRAFDV---LAEMKAETHPIDPDHITVGALMKACANAG------------QVDRAK 599

Query: 393 VVYNALLSYFCKAGFP----------------NQAVKLYNTMLDKGFTPDNYSFVGLLRG 436
            VY  +  Y  K G P                + A+ +Y+ M  KG  PD   F  L+  
Sbjct: 600 EVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

Query: 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD 496
              A  +D+A  + Q        +    +++++     A    KA++L+      K    
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718

Query: 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLL 555
           V +    I  L EG +  +A  + S+MK + + PN  TY ++L++  ++ +  +   LL
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC 438
           D+V YN L+  +CK G   +A+KL+N M  +G  P+ Y++  L+ GLC
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 64/364 (17%)

Query: 191 ALCNLC-KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITL 249
           AL   C  L  +  VK V   +   GF P+  M   +L    K G + +A +L   M   
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185

Query: 250 GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIA 309
                                                  N+ ++ ++I G ++A  +  A
Sbjct: 186 -------------------------------------ERNLASWGTIIGGLVDAGNYREA 208

Query: 310 FS-FLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS 368
           F+ F +M E    A    F  V++   + +GS      ++  +L+  +V D++  C+L+ 
Sbjct: 209 FALFREMWEDGSDAEPRTF-VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267

Query: 369 TVCLSGR-------FSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK 421
                G        F  +P        E   V +N++L+ +   G+  +A+ LY  M D 
Sbjct: 268 MYSKCGDIEDARCVFDGMP--------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319

Query: 422 GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKA 481
           G + D ++F  ++R       ++ A   + G++     ++   +TA+VD   + GR   A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379

Query: 482 IQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL 540
                R + ++ P  +++S+   I G    GR  +A  ++ +M    V PN  T+ + +L
Sbjct: 380 -----RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVL 433

Query: 541 SFCK 544
           S C+
Sbjct: 434 SACR 437

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 60.9 bits (149), Expect = 4e-12
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300
            V  +  LIDG+ +  +++ A  L+ +M + G  PNV TY+ LI G 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544
           DVV+Y   I G  + G+ EEA  L+++MK   + PN YTY +++   CK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 80/367 (21%), Positives = 140/367 (38%), Gaps = 58/367 (15%)

Query: 183 PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQL 242
           P+  +F   L     + D++  ++V   +VR GF  +V +   L+  + K G +  A  +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244

Query: 243 LGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME 302
              M          +W  +I G+           L+  M +    P+++T TS+I     
Sbjct: 245 FDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300

Query: 303 AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYT 362
                +       +   G A D+   N LI     +GS+ +A  V+  + E K       
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETK------- 352

Query: 363 FCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG 422
                                       D V + A++S + K G P++A++ Y  M    
Sbjct: 353 ----------------------------DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384

Query: 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH------VHTAIVDRLIEAG 476
            +PD  +   +L        +D       G+ ++  A          V  A+++   +  
Sbjct: 385 VSPDEITIASVLSACACLGDLD------VGVKLHELAERKGLISYVVVANALIEMYSKCK 438

Query: 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR 536
              KA+++F   I EK   DV+S+T  I GL    R  EA I + QM  + + PN+ T  
Sbjct: 439 CIDKALEVFHN-IPEK---DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTL- 492

Query: 537 VMLLSFC 543
           +  LS C
Sbjct: 493 IAALSAC 499

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 65.3 bits (159), Expect = 7e-11
 Identities = 80/377 (21%), Positives = 140/377 (37%), Gaps = 84/377 (22%)

Query: 183 PNFLSFN--IALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY 240
           P+ ++    I+ C L  L D    +++ G +V+ GF  +V +   L+  +  +G   EA 
Sbjct: 286 PDLMTITSVISACEL--LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343

Query: 241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300
           ++   M T        +WT +I G+ +    D A   +  M Q+  SP+ +T  S++   
Sbjct: 344 KVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399

Query: 301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE------- 353
                  +     ++ E +G    +V  N LI+  SK    D AL+V+  + E       
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459

Query: 354 -----------------------LKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA 390
                                  L L P+S T  + LS     G       L+CG E+ A
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG------ALMCGKEIHA 513

Query: 391 ---------------------------------------DLVVYNALLSYFCKAGFPNQA 411
                                                  D+V +N LL+ +   G  + A
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573

Query: 412 VKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTA-IVD 470
           V+L+N M++ G  PD  +F+ LL     +  + + +  +  +           H A +VD
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633

Query: 471 RLIEAGRCHKAIQLFRR 487
            L  AG+  +A     +
Sbjct: 634 LLGRAGKLTEAYNFINK 650

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 59/254 (23%), Positives = 116/254 (45%), Gaps = 23/254 (9%)

Query: 183 PNFLSFNIALCNLCKLNDVSNVKDVIGMMVR-----KGFYPNVRMFEILLNCFCKMGRIA 237
           PN ++   AL    ++  +   K++   ++R      GF PN      LL+ + + GR+ 
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMN 541

Query: 238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLI 297
            A+              V +W +L+ G+    +  MA  L+ +MV++G +P+ VT+ SL+
Sbjct: 542 YAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

Query: 298 KGFMEAKMFSIAFSFLDMLESEGH-APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL 356
                + M +    +   +E +    P+L  +  ++D L + G   +A   Y+ + ++ +
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA---YNFINKMPI 653

Query: 357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCG--LEVEADLVVYNALL-SYFCKAGFPNQAVK 413
            PD   + +LL+  C   R   L +L      E++ + V Y  LL + +  AG  ++  +
Sbjct: 654 TPDPAVWGALLNA-CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712

Query: 414 LYNTMLDKGFTPDN 427
           +  TM + G T D 
Sbjct: 713 VRKTMRENGLTVDP 726

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337
           P+VVTY +LI G+ +      A    + ++  G  P++  +++LID L K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 89/358 (24%), Positives = 149/358 (41%), Gaps = 74/358 (20%)

Query: 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG- 285
           L   C  G++ +A +LL  M  L   +  +A+  L     RL         W++ V+ G 
Sbjct: 58  LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----RLCE-------WKRAVEEGS 106

Query: 286 --CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE---GHAP--DLVFHNVLIDCLSKM 338
             CS  + ++ SL      A M S+   F +++ +    G  P  DL   NVL+   +K 
Sbjct: 107 RVCSRALSSHPSLGVRLGNA-MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165

Query: 339 GSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA-------- 390
           G +D+AL +Y  +L   + PD YTF  +L T C       +P L  G EV A        
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-CGG-----IPDLARGREVHAHVVRFGFE 219

Query: 391 -DLVVYNALLSYFCKAG---------------------------FPN----QAVKLYNTM 418
            D+ V NAL++ + K G                           F N    + ++L+ TM
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279

Query: 419 LDKGFTPDNYSFVGLLR--GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476
            +    PD  +   ++    L G  ++   ++ Y  +V    AV+  V  +++   +  G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGY--VVKTGFAVDVSVCNSLIQMYLSLG 337

Query: 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT 534
              +A ++F R   +    D VS+T  I G  + G  ++A   Y+ M+   V P+  T
Sbjct: 338 SWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 41/331 (12%)

Query: 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVD-----LGIKVLKETQLPNFLSFNIALCN 194
           E F EM   G   N      ++D   + G+V       GI   K  + P+ + FN AL +
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFN-ALIS 550

Query: 195 LC-KLNDVSNVKDVIGMMV--RKGFYPNVRMFEILLNCFCKMG---RIAEAYQLLGLMIT 248
            C +   V    DV+  M        P+      L+      G   R  E YQ++     
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610

Query: 249 LGT----SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAK 304
            GT    +++VN+ +   D        D A  +++ M + G  P+ V +++L+     A 
Sbjct: 611 KGTPEVYTIAVNSCSQKGD-------WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

Query: 305 MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFC 364
               AF  L     +G     V ++ L+   S   ++  AL++Y+ +  +KL P   T  
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723

Query: 365 SLLSTVCLSGRFSLLPKLVCGLEVEADL---------VVYNALLSYFCKAGFPNQAVKLY 415
           +L++ +C   +    PK    LEV +++         + Y+ LL    +    +  + L 
Sbjct: 724 ALITALCEGNQL---PK---ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Query: 416 NTMLDKGFTPDNYSFVGLLRGLCGARKIDEA 446
           +   + G  P N      + GLC  R+ ++A
Sbjct: 778 SQAKEDGIKP-NLVMCRCITGLC-LRRFEKA 806

Length = 1060

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.1 bits (128), Expect = 8e-08
 Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 12/259 (4%)

Query: 304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF 363
           ++        + LE   ++       +L   L K+G  ++AL++ +  LEL+L+P+    
Sbjct: 38  ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA 97

Query: 364 CSLLSTVC-----LSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTM 418
              L  +            LL K +             AL + + + G   +A++LY   
Sbjct: 98  LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKA 156

Query: 419 LDKGFTPDNYSFVGLLRG--LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476
           L+     +  +   L  G  L    + +EA+ + +  +  NP  +A     +    ++ G
Sbjct: 157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216

Query: 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR 536
           +  +A++ + +A+ E  P +  +       LLE GR EEA     +   +          
Sbjct: 217 KYEEALEYYEKAL-ELDPDNAEALYNLALLLLELGRYEEALEALEKALELD---PDLYNL 272

Query: 537 VMLLSFCKERNIKMVKRLL 555
            + L       ++++++  
Sbjct: 273 GLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 323 PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC 371
           PD+V +N LID   K G  ++AL +++ + +  + P+ YT+  L+  +C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC-GARKIDEAINVYQGIV 454
           N+ L   C  G   QA+KL  +M +     D  ++V L R LC   R ++E   V    +
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113

Query: 455 MNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTE 514
            ++P++   +  A++   +  G    A  +F + + E+   D+ S+ V + G  + G  +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGK-MPER---DLFSWNVLVGGYAKAGYFD 169

Query: 515 EAYILYSQMKHIAVPPNAYTYRVMLLS 541
           EA  LY +M    V P+ YT+  +L +
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRT 196

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 214 KGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLM 246
           KG  P+V  +  L++  C+ GR+ EA +LL  M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 183 PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232
           P+ +++N  +   CK   V     +   M ++G  PNV  + IL++  CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 378 LLPKLVCGLEVEA----------DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN 427
           LL  + CG+ ++A          +L  +  ++     AG   +A  L+  M + G   + 
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224

Query: 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRR 487
            +FV +LR   G         ++  ++      +  V  A++D   + G    A     R
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA-----R 279

Query: 488 AIVEKYP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER 546
            + +  P    V++   + G    G +EEA  LY +M+   V  + +T+ +M+  F +  
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

Query: 547 NIKMVKRLLQDVIDARIELD 566
            ++  K+    +I     LD
Sbjct: 340 LLEHAKQAHAGLIRTGFPLD 359

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 284 NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD 314
            G  P+VVTY +LI G   A     A   LD
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD 426
           V YN L+   CKAG   +A++L+  M ++G  PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV 290
            +  LIDG  +  R++ A  L+++M + G  P+V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 329 NVLIDCLSKMGSYDDALDVYDGLLELKLVPDS 360
           N LID L K G  ++AL+++  + E  + PD 
Sbjct: 4   NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGF 423
           V YN+L+S +CKAG   +A++L+  M +KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP 425
           L  YNALL    KAG P+ A+ +   M   G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 360 SYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVV----YNALLSYFCKAGFPNQAVKLY 415
             + CS +  +   GR     +L   LE      +    Y+AL+              +Y
Sbjct: 87  GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY 146

Query: 416 NTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA 475
             +   GF PD Y    +L        + +A  ++  +    P  N      I+  L++A
Sbjct: 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDA 202

Query: 476 GRCHKAIQLFR 486
           G   +A  LFR
Sbjct: 203 GNYREAFALFR 213

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD 324
           VTY +LI G  +A     A      ++  G  PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 234 GRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTY 293
           G   EA  L   M   G S+    ++++I  F RL  L+ A      +++ G   ++V  
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363

Query: 294 TSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE 353
           T+L+  + +      A +  D +  +    +L+  N LI      G    A+++++ ++ 
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIA 419

Query: 354 LKLVPDSYTFCSLLSTVCLSG 374
             + P+  TF ++LS    SG
Sbjct: 420 EGVAPNHVTFLAVLSACRYSG 440

Length = 697

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516
                A+ + L+  GR  +A+ L  R  +   PL    + + +R L   GR  EA
Sbjct: 61  LEALEALAEALLALGRHEEALALLERL-LALDPLRERLHRLLMRALYRAGRRAEA 114

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	645
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.77
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.74
KOG2076	895	consensus RNA polymerase III transcription factor	99.72
KOG2003	840	consensus TPR repeat-containing protein [General f	99.69
KOG2076	895	consensus RNA polymerase III transcription factor	99.69
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.66
KOG2003	840	consensus TPR repeat-containing protein [General f	99.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.56
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.53
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.45
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.43
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.42
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.4
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.3
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.29
KOG1129	478	consensus TPR repeat-containing protein [General f	99.27
PF13041	50	PPR_2: PPR repeat family	99.25
PF13041	50	PPR_2: PPR repeat family	99.24
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.24
PRK12370	553	invasion protein regulator; Provisional	99.24
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.24
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.24
PRK12370	553	invasion protein regulator; Provisional	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
KOG1129	478	consensus TPR repeat-containing protein [General f	99.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.14
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.11
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.11
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.06
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.04
PRK04841	903	transcriptional regulator MalT; Provisional	98.99
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.97
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.94
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.92
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
PRK11189	296	lipoprotein NlpI; Provisional	98.89
PRK11189	296	lipoprotein NlpI; Provisional	98.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.81
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.73
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.72
KOG1125	579	consensus TPR repeat-containing protein [General f	98.72
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.62
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.6
PF12854	34	PPR_1: PPR repeat	98.6
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.6
PLN02789	320	farnesyltranstransferase	98.56
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.54
PF12854	34	PPR_1: PPR repeat	98.53
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.45
PRK15359	144	type III secretion system chaperone protein SscB;	98.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.44
PRK15359	144	type III secretion system chaperone protein SscB;	98.43
PLN02789	320	farnesyltranstransferase	98.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.39
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.39
KOG1125	579	consensus TPR repeat-containing protein [General f	98.37
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.28
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.17
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.11
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.02
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.97
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.96
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.93
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.83
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.71
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.69
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.66
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.63
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.63
KOG0553	304	consensus TPR repeat-containing protein [General f	97.63
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.62
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.56
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.55
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.47
KOG0553	304	consensus TPR repeat-containing protein [General f	97.46
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.42
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.39
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.33
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.31
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.28
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.24
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.21
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.15
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.13
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.11
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.09
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.05
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.03
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.01
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.98
PF12688	120	TPR_5: Tetratrico peptide repeat	96.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.84
PF12688	120	TPR_5: Tetratrico peptide repeat	96.76
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.7
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.64
PRK10803	263	tol-pal system protein YbgF; Provisional	96.62
PRK10803	263	tol-pal system protein YbgF; Provisional	96.61
PF13371	73	TPR_9: Tetratricopeptide repeat	96.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.48
PRK15331	165	chaperone protein SicA; Provisional	96.47
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.44
PF13371	73	TPR_9: Tetratricopeptide repeat	96.41
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.34
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.34
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.23
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.22
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.98
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.98
PRK15331	165	chaperone protein SicA; Provisional	95.89
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.73
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.72
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.69
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.66
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.51
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.45
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.37
PRK11906	458	transcriptional regulator; Provisional	95.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.2
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.06
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.95
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.94
KOG4555	175	consensus TPR repeat-containing protein [Function	94.94
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.87
KOG3941	406	consensus Intermediate in Toll signal transduction	94.7
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.22
PF13428	44	TPR_14: Tetratricopeptide repeat	94.12
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.09
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.07
PRK11906	458	transcriptional regulator; Provisional	94.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.99
KOG1585	308	consensus Protein required for fusion of vesicles	93.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.91
KOG3941	406	consensus Intermediate in Toll signal transduction	93.9
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.65
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.64
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.54
KOG1258	577	consensus mRNA processing protein [RNA processing	93.5
KOG4555	175	consensus TPR repeat-containing protein [Function	93.36
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.28
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.2
PF13512	142	TPR_18: Tetratricopeptide repeat	93.19
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.14
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.14
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.12
PF13428	44	TPR_14: Tetratricopeptide repeat	93.1
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.75
PF13431	34	TPR_17: Tetratricopeptide repeat	92.54
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.49
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.27
KOG1585	308	consensus Protein required for fusion of vesicles	92.1
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.05
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.94
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.7
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.34
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.23
PF13512	142	TPR_18: Tetratricopeptide repeat	90.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.56
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.42
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.21
PF13431	34	TPR_17: Tetratricopeptide repeat	89.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	89.52
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.34
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.27
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.01
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.0
KOG1258	577	consensus mRNA processing protein [RNA processing	88.62
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.47
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.47
PRK11619	644	lytic murein transglycosylase; Provisional	88.19
KOG4234	271	consensus TPR repeat-containing protein [General f	88.11
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.87
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.74
KOG4234	271	consensus TPR repeat-containing protein [General f	87.63
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	87.26
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.04
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.97
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.84
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.26
PRK09687	280	putative lyase; Provisional	86.03
PF13929	292	mRNA_stabil: mRNA stabilisation	85.94
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.28
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.96
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.69
PRK09687	280	putative lyase; Provisional	84.43
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.06
PF13929	292	mRNA_stabil: mRNA stabilisation	83.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	83.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.9
KOG1550	552	consensus Extracellular protein SEL-1 and related	83.74
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	83.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.97
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	82.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.59
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.09
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.0
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.0
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.86
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	81.25
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.01
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.75
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	80.74
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.68
PF13762	145	MNE1: Mitochondrial splicing apparatus component	80.38
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.21

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.8e-76  Score=644.11  Aligned_cols=533  Identities=15%  Similarity=0.205  Sum_probs=517.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437           51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW  130 (645)
Q Consensus        51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  130 (645)
                      +.+...+.++|+.+.|+++|+.+..     ||..+||.+|.+|++ .|++++|.++|++|...|+.||..||+.++++|+
T Consensus       125 n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~-~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~  198 (857)
T PLN03077        125 NAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAK-AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG  198 (857)
T ss_pred             HHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence            4555677899999999999999853     589999999999999 8999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      ..+++..+.+++..|.+.|+.||..++|+|+.+|++.|++++|.++|++|..+|.++||.++.+|++.|++++|+++|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437          211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV  290 (645)
Q Consensus       211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  290 (645)
                      |.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+++.+|++.|++++|.++|++|..    ||.
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~  354 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA  354 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974    799


Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      .+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVY  450 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  450 (645)
                      +++|++++|.++|+.+. .+|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++
T Consensus       435 ~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~  512 (857)
T PLN03077        435 SKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH  512 (857)
T ss_pred             HHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence            99999999999999875 57999999999999999999999999999986 59999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006437          451 QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP  530 (645)
Q Consensus       451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p  530 (645)
                      ..+.+.|..++..++++++++|+++|++++|.++|+.+     .||..+||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus       513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P  587 (857)
T PLN03077        513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP  587 (857)
T ss_pred             HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999987     4799999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          531 NAYTYRVMLLSFCKERNIKMVKRLLQDVI-DARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       531 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      |..||+.++.+|++.|++++|.++|+.|. +.++.|+..+|+.++++|.+.|++++|.+++++|.   ++||..
T Consensus       588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~  658 (857)
T PLN03077        588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA  658 (857)
T ss_pred             CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence            99999999999999999999999999999 78999999999999999999999999999999995   899988

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.5e-72  Score=614.77  Aligned_cols=542  Identities=17%  Similarity=0.226  Sum_probs=496.9

Q ss_pred             CCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           80 FHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      .++...+|.++..+.+ .|++++|..+|++|.+.|++|+..+|..++++|.+.+.++.|.+++..+.+.|..++...+|+
T Consensus        48 ~~~~~~~n~~i~~l~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~  126 (857)
T PLN03077         48 SSSTHDSNSQLRALCS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA  126 (857)
T ss_pred             ccchhhHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence            3688889999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437          160 VMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEA  239 (645)
Q Consensus       160 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  239 (645)
                      |+.+|++.|+++.|.++|++|..||..+||.++.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+
T Consensus       127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~  206 (857)
T PLN03077        127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG  206 (857)
T ss_pred             HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437          240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE  319 (645)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  319 (645)
                      .+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|..    ||..+|+++|.+|++.|++++|+++|++|.+.
T Consensus       207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~  282 (857)
T PLN03077        207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL  282 (857)
T ss_pred             HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999974    79999999999999999999999999999999


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHH
Q 006437          320 GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALL  399 (645)
Q Consensus       320 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li  399 (645)
                      |+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.+. .||..+|+.+|
T Consensus       283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li  361 (857)
T PLN03077        283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMI  361 (857)
T ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999875 68999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437          400 SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (645)
                      .+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|+++
T Consensus       362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~  441 (857)
T PLN03077        362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID  441 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      +|.++|++|.+    +|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.
T Consensus       442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            99999999864    6889999999999999999999999999986 578888888877777766666666666666555


Q ss_pred             HCCC------------------------------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHh
Q 006437          560 DARI------------------------------ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGL  609 (645)
Q Consensus       560 ~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~  609 (645)
                      +.|+                              .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||.. ++..+
T Consensus       517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~l  595 (857)
T PLN03077        517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISL  595 (857)
T ss_pred             HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHH
Confidence            5444                              3456667777777777777777777777777777777777 44444


Q ss_pred             hh-----cccCCccccccccccccccCCC
Q 006437          610 LS-----DETMTPVSLFDGFVPCERRAGN  633 (645)
Q Consensus       610 L~-----~~~~~~~~~~~~~~~~~~~~~~  633 (645)
                      |.     |...++.++++.+.+.....|+
T Consensus       596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~  624 (857)
T PLN03077        596 LCACSRSGMVTQGLEYFHSMEEKYSITPN  624 (857)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence            44     6666777777777655554444

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.3e-70  Score=584.91  Aligned_cols=516  Identities=16%  Similarity=0.213  Sum_probs=374.9

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC-VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      ++...|..++..+.+ .|++++|.++|++|.+.|+ +++..++..++..|.+.|.+++|..+|+.|..    ||..+|+.
T Consensus       368 ~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        368 RKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            355666666666666 6777777777777766664 34555566666667777777777777666653    66777777


Q ss_pred             HHHHHHhcCCHhHHHHHHhhcC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437          160 VMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR  235 (645)
Q Consensus       160 ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  235 (645)
                      ++.+|++.|++++|.++|+.|.    .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            7777777777777777776664    466677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhchHHHHHHHHhcCChhHHHHHH
Q 006437          236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ--NGCSPNVVTYTSLIKGFMEAKMFSIAFSFL  313 (645)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  313 (645)
                      +++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            777777777777667777777777777777777777777777777754  456677777777777777777777777777


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHh---cCCCCC
Q 006437          314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVC---GLEVEA  390 (645)
Q Consensus       314 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~---~~~~~~  390 (645)
                      +.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++   ..+..|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777666663   335666


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            77777777777777777777777777777666777777777777777777777777777777776677777777777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-----------------------cCCHHHHHHHHHHHhhCC
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE-----------------------GGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~m~~~~  527 (645)
                      +|++.|++++|.+++++|.+.|+.||..+|++++..|.+                       .+..++|..+|++|.+.|
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G  842 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG  842 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence            777777777777777777777777777777776654321                       123467999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+.|++++.+.  .++|..++++|...|+.|+..
T Consensus       843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999988889999999999999998888889999999999988432  368999999999999999875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.5e-69  Score=578.99  Aligned_cols=507  Identities=14%  Similarity=0.162  Sum_probs=480.8

Q ss_pred             HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006437           55 STLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM  134 (645)
Q Consensus        55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  134 (645)
                      ..+.+.|++..|+++|+++.......++...++.++..+.+ .|..++|..+++.|..    |+..+|+.++.+|++.|+
T Consensus       378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~  452 (1060)
T PLN03218        378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-QRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD  452 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-CCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence            44557799999999999998876667888999999999999 8999999999999975    899999999999999999


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC----CCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437          135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      ++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|.++|++
T Consensus       453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~  532 (1060)
T PLN03218        453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI  532 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997    68999999999999999999999999999


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006437          211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT--LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSP  288 (645)
Q Consensus       211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  288 (645)
                      |.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+  .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus       533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p  612 (1060)
T PLN03218        533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG  612 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999986  6789999999999999999999999999999999999999


Q ss_pred             ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS  368 (645)
Q Consensus       289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  368 (645)
                      +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|+.|+..+|+.++.
T Consensus       613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~  692 (1060)
T PLN03218        613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG  692 (1060)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437          369 TVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE  445 (645)
Q Consensus       369 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  445 (645)
                      +|++.|++++|.++|+.+   +..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus       693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~  772 (1060)
T PLN03218        693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV  772 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999554   68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHH----hcC-------------------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLI----EAG-------------------RCHKAIQLFRRAIVEKYPLDVVSYTV  502 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~~~~~~~~~~~~~~~~  502 (645)
                      |.+++++|.+.|+.||..+|++++..|.    +++                   ..+.|..+|++|.+.|+.||..+|+.
T Consensus       773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~  852 (1060)
T PLN03218        773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ  852 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence            9999999999999999999999987643    222                   23679999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYH  568 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  568 (645)
                      ++.++++.+..+.+..+++.|...+..|+..+|+++++++.+.  .++|..++++|.+.|+.|+..
T Consensus       853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            9998889999999999999999888899999999999998543  468999999999999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-67  Score=562.41  Aligned_cols=512  Identities=16%  Similarity=0.215  Sum_probs=476.5

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVG-CVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      .+..+|+.++..+.+ .|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.
T Consensus        85 ~~~~~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         85 KSGVSLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCceeHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            466789999999999 899999999999998864 679999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437          160 VMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEA  239 (645)
Q Consensus       160 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  239 (645)
                      |+++|++.|++++|.++|++|..||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437          240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE  319 (645)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  319 (645)
                      .+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|..    +|..+|+++|.+|++.|++++|.++|++|.+.
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~  319 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS  319 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999974    69999999999999999999999999999999


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHH
Q 006437          320 GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALL  399 (645)
Q Consensus       320 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li  399 (645)
                      |+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|+++|++++|.++|+.+. .||..+||.||
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI  398 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALI  398 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998875 68999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCH
Q 006437          400 SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM-NNPAVNAHVHTAIVDRLIEAGRC  478 (645)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~  478 (645)
                      .+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|++.|++
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~  478 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL  478 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence            99999999999999999999999999999999999999999999999999999987 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      ++|.++++++   ++.|+..+|++|+.+|...|+++.|..+++++.+  +.| +..+|..|+..|++.|++++|.++++.
T Consensus       479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999875   4679999999999999999999999999999976  566 577999999999999999999999999


Q ss_pred             HHHCCCCcC-HHHHHHHHH---HHH--------hcCChhHHHHHHHHHHHCCCCCChh
Q 006437          558 VIDARIELD-YHTSIRLTK---FIF--------KFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       558 ~~~~~~~~~-~~~~~~l~~---~~~--------~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      |.+.|+... ..+|..+..   .+.        ...-++...++..+|.+.|..|+..
T Consensus       554 m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        554 LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            999987633 222321110   000        0111344567889999999999866

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.4e-61  Score=516.65  Aligned_cols=470  Identities=14%  Similarity=0.167  Sum_probs=445.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC----CCChhhHHH
Q 006437          116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG-FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNI  190 (645)
Q Consensus       116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~  190 (645)
                      ..+..+++.+|..|.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++.+.|.+++..+.    .||..+||.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            3456689999999999999999999999998764 78999999999999999999999999998875    689999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 006437          191 ALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRR  270 (645)
Q Consensus       191 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  270 (645)
                      ++..|++.|+++.|.++|++|.+    ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~  239 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS  239 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence            99999999999999999999964    79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          271 LDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      .+.+.+++..+.+.|+.||..+|+++|.+|++.|++++|.++|++|..    +|..+|+.++.+|++.|+.++|.++|++
T Consensus       240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999964    5899999999999999999999999999


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH---hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006437          351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV---CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN  427 (645)
Q Consensus       351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  427 (645)
                      |.+.|+.||..||+.++.+|++.|+++.|.+++   .+.+..||..+|+.++.+|++.|++++|.++|++|.+    ||.
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~  391 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL  391 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence            999999999999999999999999999999988   4457899999999999999999999999999999964    789


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV-EKYPLDVVSYTVAIRG  506 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~  506 (645)
                      .+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986 5899999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437          507 LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA  586 (645)
Q Consensus       507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  586 (645)
                      |++.|++++|.+++++|   ++.|+..+|+.|+.+|+..|+++.|..+++++.+.++. +..+|..|++.|++.|++++|
T Consensus       472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence            99999999999999876   47899999999999999999999999999999765543 578999999999999999999


Q ss_pred             HHHHHHHHHCCCCCC
Q 006437          587 VNQLVEMCNLGLIPD  601 (645)
Q Consensus       587 ~~~~~~m~~~g~~p~  601 (645)
                      .+++++|++.|+++.
T Consensus       548 ~~v~~~m~~~g~~k~  562 (697)
T PLN03081        548 AKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHHHHHcCCccC
Confidence            999999999998643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.9e-32  Score=305.58  Aligned_cols=557  Identities=12%  Similarity=0.072  Sum_probs=450.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437           51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW  130 (645)
Q Consensus        51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  130 (645)
                      ..+..++...++++.|...+..+....+  .+...+..+...+.+ .|++++|...|+++.+.. +.+...+..+...+.
T Consensus       333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  408 (899)
T TIGR02917       333 RLLASIQLRLGRVDEAIATLSPALGLDP--DDPAALSLLGEAYLA-LGDFEKAAEYLAKATELD-PENAAARTQLGISKL  408 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4556677789999999999988876654  578888889999999 899999999999988764 446677888888899


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHH
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDV  207 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~  207 (645)
                      ..|++++|.+.++.+.+.. +........++..+.+.|++++|.++++++.   +.+..++..+...+...|++++|.+.
T Consensus       409 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  487 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA  487 (899)
T ss_pred             hCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999988765 3344566678888999999999999998875   45667888899999999999999999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437          208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS  287 (645)
Q Consensus       208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  287 (645)
                      |+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +
T Consensus       488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  564 (899)
T TIGR02917       488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P  564 (899)
T ss_pred             HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence            99988764 3355677788888999999999999999998765 3467788889999999999999999999987654 4


Q ss_pred             CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLL  367 (645)
Q Consensus       288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  367 (645)
                      .+...+..+...+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+.
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  642 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA  642 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            466778888899999999999999999988753 4467788889999999999999999999988753 34566788888


Q ss_pred             HHHHhcCCcccHHHHHhc-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437          368 STVCLSGRFSLLPKLVCG-LEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE  445 (645)
Q Consensus       368 ~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  445 (645)
                      ..+...|++++|.+.++. ....| +...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++
T Consensus       643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  721 (899)
T TIGR02917       643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA  721 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence            889999999999998844 23334 47788888999999999999999999998875 4566777888888889999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      |.+.++.+...++..  .++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+
T Consensus       722 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       722 AIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999988876554  566778888999999999999999988764 56788888899999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhh
Q 006437          526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWR  605 (645)
Q Consensus       526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~  605 (645)
                      .. +++..++..+...+...|+ .+|+.+++++.+..+. ++..+..+...+...|++++|.+.++++.+.+..-...+.
T Consensus       799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  875 (899)
T TIGR02917       799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY  875 (899)
T ss_pred             hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence            53 4477888889999999999 8899999998876554 6677888888899999999999999999876543222222


Q ss_pred             HHH-hhh--cccCCcccccccc
Q 006437          606 KLG-LLS--DETMTPVSLFDGF  624 (645)
Q Consensus       606 ~~~-~L~--~~~~~~~~~~~~~  624 (645)
                      .+. .+.  |+..++.+.++.+
T Consensus       876 ~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       876 HLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            222 222  7766666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=8e-32  Score=303.89  Aligned_cols=560  Identities=13%  Similarity=0.083  Sum_probs=472.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437           51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW  130 (645)
Q Consensus        51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  130 (645)
                      ......+...++++.|...|+.+....+  .+...+..+...+.+ .|+++.|...++.+.... +.+...+..+...+.
T Consensus       299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  374 (899)
T TIGR02917       299 LLAGASEYQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLR-LGRVDEAIATLSPALGLD-PDDPAALSLLGEAYL  374 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3445667788999999999999877654  467778888888888 899999999999998765 457788899999999


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHH
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDV  207 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~  207 (645)
                      +.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+...   +.+......++..+.+.|++++|.++
T Consensus       375 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  453 (899)
T TIGR02917       375 ALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA  453 (899)
T ss_pred             HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999998764 4567788889999999999999999998875   23345667778889999999999999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437          208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS  287 (645)
Q Consensus       208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  287 (645)
                      ++.+.... +.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +
T Consensus       454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~  530 (899)
T TIGR02917       454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P  530 (899)
T ss_pred             HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence            99998753 4567789999999999999999999999998764 3456778888999999999999999999998764 4


Q ss_pred             CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLL  367 (645)
Q Consensus       288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  367 (645)
                      .+..++..+...+...|+.++|...++++.+.+. .+...+..+...+...|++++|..+++.+.+. .+.+..++..+.
T Consensus       531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~  608 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG  608 (899)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence            4678889999999999999999999999987643 35667788899999999999999999999875 355678899999


Q ss_pred             HHHHhcCCcccHHHHHhcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437          368 STVCLSGRFSLLPKLVCGL-EV-EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE  445 (645)
Q Consensus       368 ~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  445 (645)
                      ..+...|++++|...++.. .. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus       609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  687 (899)
T TIGR02917       609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES  687 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998543 22 3356788889999999999999999999998763 3457788899999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      |.++++.+....+. +...+..+...+.+.|++++|.+.|+++...+  |+..++..++.++.+.|++++|.+.++++.+
T Consensus       688 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       688 AKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999888765 67778889999999999999999999998875  5667888899999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--
Q 006437          526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM--  603 (645)
Q Consensus       526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--  603 (645)
                      .. +.+...+..+...|...|++++|.++++++.+..+. ++..+..++..+...|+ ++|++.++++...  .|+..  
T Consensus       765 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~  839 (899)
T TIGR02917       765 TH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAI  839 (899)
T ss_pred             hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHH
Confidence            43 457888999999999999999999999999987654 78899999999999999 8899999999864  44443  


Q ss_pred             hhHHHhhh---cccCCccccccccccccc
Q 006437          604 WRKLGLLS---DETMTPVSLFDGFVPCER  629 (645)
Q Consensus       604 w~~~~~L~---~~~~~~~~~~~~~~~~~~  629 (645)
                      |..++.+.   |+..++.+.++...+..+
T Consensus       840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       840 LDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            55555544   777777777777666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.8e-22  Score=227.69  Aligned_cols=530  Identities=15%  Similarity=0.097  Sum_probs=350.0

Q ss_pred             HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHH----------------HHHHHHHHhhcCChhHHHHHHHHHHHcCCCC
Q 006437           54 HSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSF----------------DHMISVVTRLTGRFETVRGIVGELARVGCVI  117 (645)
Q Consensus        54 ~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~  117 (645)
                      ..++...++.+.|.+.++.+.+..+  .++...                -.+...+.+ .|++++|...|+.+.... +|
T Consensus        69 ~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~-~g~~~eA~~~~~~~l~~~-p~  144 (1157)
T PRK11447         69 FRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTTMLLSTPEGRQALQQARLLAT-TGRTEEALASYDKLFNGA-PP  144 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHhcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHccCC-CC
Confidence            3555678899999999988776554  233322                222335666 789999999999887654 34


Q ss_pred             CHHH-HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-----------
Q 006437          118 KAQT-FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-----------  185 (645)
Q Consensus       118 ~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------  185 (645)
                      +... ...........|+.++|++.++++.+.. +.+...+..+..++...|+.++|++.|+++.....           
T Consensus       145 ~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~  223 (1157)
T PRK11447        145 ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG  223 (1157)
T ss_pred             ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence            4322 1111122234588899999999988764 55677788888888888999999888876531100           


Q ss_pred             ------------hhHH----------------------------------HHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437          186 ------------LSFN----------------------------------IALCNLCKLNDVSNVKDVIGMMVRKGFYPN  219 (645)
Q Consensus       186 ------------~~~~----------------------------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  219 (645)
                                  ..+.                                  .....+...|++++|+..|++..+.. +.+
T Consensus       224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~  302 (1157)
T PRK11447        224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKD  302 (1157)
T ss_pred             HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence                        0000                                  11233556788899999998888763 236


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS-VNAW------------TVLIDGFRRLRRLDMAGYLWEKMVQNGC  286 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~  286 (645)
                      ...+..+..++.+.|++++|+..|++..+...... ...+            ......+.+.|++++|.+.|++..+.. 
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-  381 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-  381 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            77888888889999999999999998887543221 1111            122345678889999999999888753 


Q ss_pred             CCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--------------------------------
Q 006437          287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC--------------------------------  334 (645)
Q Consensus       287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------------------------------  334 (645)
                      +.+...+..+...+...|++++|++.|+++.+.... +...+..+...                                
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~  460 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ  460 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            335566777788888899999999999888765321 22333333332                                


Q ss_pred             ----------HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCC-CHHHHHHHHHHH
Q 006437          335 ----------LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEA-DLVVYNALLSYF  402 (645)
Q Consensus       335 ----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~  402 (645)
                                +...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++.. ...| +...+..+...+
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l  539 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL  539 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                      334555566666665555432 113344455555566666666666555332 1122 233333333344


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHh---------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          403 CKAGFPNQAVKLYNTMLDKGFTPDNY---------SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      ...++.++|+..++.+......++..         .+..+...+...|+.++|.++++.    .+ .+...+..+...+.
T Consensus       540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~  614 (1157)
T PRK11447        540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQ  614 (1157)
T ss_pred             HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHH
Confidence            45556666666555543221111111         112334456667777777777662    22 25556778889999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      +.|++++|...|+++.+.. |.+...+..++..|...|++++|++.++...+  ..| +..++..+..++...|++++|.
T Consensus       615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~  691 (1157)
T PRK11447        615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQ  691 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999875 55788999999999999999999999998876  445 5667777888889999999999


Q ss_pred             HHHHHHHHCCCCc-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC
Q 006437          553 RLLQDVIDARIEL-----DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN-LGLIP  600 (645)
Q Consensus       553 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p  600 (645)
                      ++++++.......     +...+..+...+.+.|+.++|++.+++... .|+.|
T Consensus       692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~  745 (1157)
T PRK11447        692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP  745 (1157)
T ss_pred             HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence            9999998754322     235667778889999999999999988753 34543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.7e-22  Score=227.90  Aligned_cols=525  Identities=12%  Similarity=0.004  Sum_probs=347.2

Q ss_pred             HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHH------------
Q 006437           55 STLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTF------------  122 (645)
Q Consensus        55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------------  122 (645)
                      +.....++.+.|.+.+..+....+  .++..+..++..+.+ .|+.++|...++++.+.. +.+....            
T Consensus        36 ~~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~-~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~  111 (1157)
T PRK11447         36 RLGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLR-QGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPE  111 (1157)
T ss_pred             HHHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCc
Confidence            344577899999999999877655  578889999999999 899999999999998876 3333322            


Q ss_pred             ----HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHH
Q 006437          123 ----LLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTF-ARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCN  194 (645)
Q Consensus       123 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~  194 (645)
                          ....+.+.+.|++++|++.|+.+.+.+ +++.. ....+.......|+.++|++.|+++.   +.+...+..+...
T Consensus       112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l  190 (1157)
T PRK11447        112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL  190 (1157)
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                333456888999999999999998764 44432 22222222334699999999999886   4455677888888


Q ss_pred             HHhcCCcchHHHHHHHHHHCCC------------------C--------------CCHhhH-------------------
Q 006437          195 LCKLNDVSNVKDVIGMMVRKGF------------------Y--------------PNVRMF-------------------  223 (645)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~-------------------  223 (645)
                      +...|+.++|++.++++.+...                  .              |+....                   
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~  270 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF  270 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence            9999999999999998754321                  0              110000                   


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hchH----
Q 006437          224 --EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV---VTYT----  294 (645)
Q Consensus       224 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~----  294 (645)
                        ......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..  |+.   ..|.    
T Consensus       271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~  347 (1157)
T PRK11447        271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLK  347 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHH
Confidence              011344567789999999999988764 3367888889999999999999999999988653  332   1121    


Q ss_pred             --------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006437          295 --------SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSL  366 (645)
Q Consensus       295 --------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  366 (645)
                              .....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L  425 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL  425 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence                    123456788999999999999988632 345667778889999999999999999988743 2234455555


Q ss_pred             HHHHHhcCCcccHHHHHhcCCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          367 LSTVCLSGRFSLLPKLVCGLEVEA-----------DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR  435 (645)
Q Consensus       367 l~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  435 (645)
                      ...+. .++.++|...++.+....           ....+..+...+...|++++|++.|++..+.. +-+...+..+..
T Consensus       426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~  503 (1157)
T PRK11447        426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ  503 (1157)
T ss_pred             HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            55553 456677777765432110           01234455666778888888888888887753 224556667777


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------
Q 006437          436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK-----------------------  492 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------------------  492 (645)
                      .+.+.|++++|...++++++..+. +...+..+...+...++.++|...++.+....                       
T Consensus       504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~  582 (1157)
T PRK11447        504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR  582 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence            888888888888888888776554 33333333344455555555555555432211                       


Q ss_pred             ----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          493 ----------------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLL  555 (645)
Q Consensus       493 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  555 (645)
                                      .+.+...+..+...+.+.|++++|+..|++..+  ..| +...+..+...+...|++++|.+.+
T Consensus       583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                            123344445555555555666666666665555  233 4455555555555556666666666


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      +.+.+.... +...+..+..++.+.|++++|.++++++..
T Consensus       661 ~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        661 AKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            555443222 344445555555556666666666665554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=1.5e-21  Score=209.79  Aligned_cols=217  Identities=6%  Similarity=-0.059  Sum_probs=166.3

Q ss_pred             HHHHHHHhc-CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437           51 HIVHSTLLN-CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY  129 (645)
Q Consensus        51 ~~~~~~l~~-~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  129 (645)
                      ......+.. .|+++.|+..|+.+....|  .++.++..+..++.. .|++++|+..+++..+..  |+...|..++..+
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~-~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i  121 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRH-FGHDDRARLLLEDQLKRH--PGDARLERSLAAI  121 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence            333333434 4899999999999988766  578899999999999 899999999999998874  5555555544333


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHH--------HHhcCCHhHHHHHHhhcCCCC--hhhHHH-HHHHHHhc
Q 006437          130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDV--------LFKIGRVDLGIKVLKETQLPN--FLSFNI-ALCNLCKL  198 (645)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-ll~~~~~~  198 (645)
                         +++.+|..+++++.+.. +-+..++..+...        |.+.++..++++  .+...|+  ..+... +...|.+.
T Consensus       122 ---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l  195 (987)
T PRK09782        122 ---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL  195 (987)
T ss_pred             ---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence               89999999999999874 4456677666666        777777777777  3333343  444444 48899999


Q ss_pred             CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437          199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK-MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL  277 (645)
Q Consensus       199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  277 (645)
                      |++++|++++.++.+.+. .+..-...+..+|.. .++ +++..+++.    .++.+...+..+.+.|.+.|+.++|.++
T Consensus       196 ~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~  269 (987)
T PRK09782        196 KQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHY  269 (987)
T ss_pred             hCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999863 345556777778887 366 777777553    2346888999999999999999999999


Q ss_pred             HHHHHHc
Q 006437          278 WEKMVQN  284 (645)
Q Consensus       278 ~~~m~~~  284 (645)
                      ++++...
T Consensus       270 L~~~~~~  276 (987)
T PRK09782        270 LIENKPL  276 (987)
T ss_pred             HHhCccc
Confidence            9987653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1.9e-18  Score=186.12  Aligned_cols=505  Identities=11%  Similarity=0.023  Sum_probs=327.2

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV  176 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  176 (645)
                      .|++++|...|++..+.. +-+..++..+.+.|...|+.++|+...++..+.. +.|...+..+ ..   .++.++|..+
T Consensus        57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~kA~~~  130 (987)
T PRK09782         57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEVKSVTT  130 (987)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccChhHHHH
Confidence            599999999999998876 4467889999999999999999999999999874 3344444444 22   2999999999


Q ss_pred             HhhcC--CC-ChhhHHHHHHH--------HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHH
Q 006437          177 LKETQ--LP-NFLSFNIALCN--------LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL-LNCFCKMGRIAEAYQLLG  244 (645)
Q Consensus       177 ~~~~~--~~-~~~~~~~ll~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~  244 (645)
                      ++++.  .| +...+..+...        |.+.   ++|.+.++ .......|+..+.... .+.|.+.+++++|++++.
T Consensus       131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            99986  33 34455444444        5554   55666665 4333334455555555 899999999999999999


Q ss_pred             HHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCC-
Q 006437          245 LMITLGTSLSVNAWTVLIDGFRR-LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHA-  322 (645)
Q Consensus       245 ~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-  322 (645)
                      .+.+.++ .+......|..+|.. .++ +++..++..    .++.+...+..+...|.+.|+.++|..+++++...-.. 
T Consensus       207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~  280 (987)
T PRK09782        207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD  280 (987)
T ss_pred             HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence            9999863 356667777778887 466 888888553    22357888999999999999999999998876432100 


Q ss_pred             CCHhhH------------------------------HHHHHH--------------------------------------
Q 006437          323 PDLVFH------------------------------NVLIDC--------------------------------------  334 (645)
Q Consensus       323 ~~~~~~------------------------------~~ll~~--------------------------------------  334 (645)
                      |+..++                              -.++..                                      
T Consensus       281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  360 (987)
T PRK09782        281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE  360 (987)
T ss_pred             CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence            000000                              000111                                      


Q ss_pred             -------------------------HHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCccc---HHHH--
Q 006437          335 -------------------------LSKMGSYDDALDVYDGLLEL-K-LVPDSYTFCSLLSTVCLSGRFSL---LPKL--  382 (645)
Q Consensus       335 -------------------------~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~---a~~~--  382 (645)
                                               ..+.|+.++|.++|...... + -.++......++..|.+.+....   +..+  
T Consensus       361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~  440 (987)
T PRK09782        361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK  440 (987)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence                                     22344555555555555441 1 12233444466666666655221   1111  


Q ss_pred             -----------------------H-hcCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          383 -----------------------V-CGLEV-EA--DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR  435 (645)
Q Consensus       383 -----------------------~-~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  435 (645)
                                             + ...+. .+  +...|..+..++.. +++++|+..+.+....  .|+......+..
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~  517 (987)
T PRK09782        441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY  517 (987)
T ss_pred             ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence                                   1 11111 22  45566666666655 6777788877776654  355444334444


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 006437          436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE  515 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  515 (645)
                      .+...|++++|...++.+....+.  ...+..+...+.+.|++++|...+++..+.. +.+...+..+.....+.|++++
T Consensus       518 al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e  594 (987)
T PRK09782        518 QAYQVEDYATALAAWQKISLHDMS--NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL  594 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence            456778888888888876554322  2334556667777888888888888777654 2333333333344445588888


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      |...+++..+  ..|+...+..+..++.+.|++++|...+++..+..+. ++..+..+..++...|+.++|++.+++..+
T Consensus       595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888776  5577777777777788888888888888888776655 667777777778888888888888887774


Q ss_pred             CCCCCChh--hhHHHhhh---cccCCcccccccccccc
Q 006437          596 LGLIPDEM--WRKLGLLS---DETMTPVSLFDGFVPCE  628 (645)
Q Consensus       596 ~g~~p~~~--w~~~~~L~---~~~~~~~~~~~~~~~~~  628 (645)
                        ..|+..  |..++.+.   |+..++...++...+..
T Consensus       672 --l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        672 --GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence              345544  33333333   55555555555544433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=4.7e-20  Score=175.95  Aligned_cols=432  Identities=15%  Similarity=0.138  Sum_probs=277.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437          122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL  198 (645)
Q Consensus       122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~  198 (645)
                      ...+.+...+.|++.+|.+-....-+.+ +.+....-.+-..+.+..+.+....--....   +.-..+|..+...+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            4455666667788888877666554432 2222233333344555555554443222222   33345777788888888


Q ss_pred             CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh-HHHHHHHHHhcCCHHHHHHH
Q 006437          199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA-WTVLIDGFRRLRRLDMAGYL  277 (645)
Q Consensus       199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~  277 (645)
                      |++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+.  .|+... .+.+-......|++++|...
T Consensus       130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            88888888888887763 124667888888888888888888888877764  444433 33344555567888888888


Q ss_pred             HHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          278 WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKL  356 (645)
Q Consensus       278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  356 (645)
                      |.+..+.. +--...|+.|...+-..|+...|+..|++..+.  .|+ ...|-.|...|...+.++.|...|.+....  
T Consensus       207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--  281 (966)
T KOG4626|consen  207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--  281 (966)
T ss_pred             HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence            77776542 123467788887888888888888888887764  333 345666777777777788887777766652  


Q ss_pred             CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHH
Q 006437          357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLR  435 (645)
Q Consensus       357 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~  435 (645)
                      .|+                               ..+.+..+...|..+|..+-|+..|++.++.  .|+ ...|+.|..
T Consensus       282 rpn-------------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  282 RPN-------------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLAN  328 (966)
T ss_pred             CCc-------------------------------chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHH
Confidence            222                               2334444455566666777777777666653  333 455666777


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 006437          436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTE  514 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  514 (645)
                      ++-..|++.+|.+.|.+.....+. .....+.|...|...|.++.|..+|....+-  .|. ....|.|...|.+.|+++
T Consensus       329 ALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~  405 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLD  405 (966)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHH
Confidence            776677777777777766665544 4555666677777777777777777766653  233 455666777777777777


Q ss_pred             HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          515 EAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       515 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      +|+..|++..+  +.|+ ...|+.+...|-..|+++.|.+.+.+++..++. =...++.|...|-.+|+..+|++-+++.
T Consensus       406 ~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  406 DAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence            77777777766  6664 456677777777777777777777766664433 2456666777777777777777777776


Q ss_pred             HHCCCCCChh
Q 006437          594 CNLGLIPDEM  603 (645)
Q Consensus       594 ~~~g~~p~~~  603 (645)
                      +  .++||..
T Consensus       483 L--klkPDfp  490 (966)
T KOG4626|consen  483 L--KLKPDFP  490 (966)
T ss_pred             H--ccCCCCc
Confidence            6  3555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6e-19  Score=177.44  Aligned_cols=566  Identities=13%  Similarity=0.078  Sum_probs=311.0

Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006437           63 DLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAF  142 (645)
Q Consensus        63 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  142 (645)
                      .+.|...|....++.+  +|+..+---..+... .+++..|+.+|.........--++....+-.++++.++.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~yn-kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSP--DNILALLGKARIAYN-KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhc-cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence            5778888888777654  344333222222233 5788888888888655432222222333445667778888888888


Q ss_pred             HHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437          143 DEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF  216 (645)
Q Consensus       143 ~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  216 (645)
                      +...+.+ +.++.++-.|.-.-....+   +..+..++...-   ..|++..+.|.+-|...|+++.+.++...+.....
T Consensus       223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            8877653 2223333222222222222   344445544432   45667777777777778888888877777765421


Q ss_pred             C--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchH
Q 006437          217 Y--PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYT  294 (645)
Q Consensus       217 ~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  294 (645)
                      .  .-...|-.+.++|-..|++++|...|-+..+....--+..+--+...|.+.|+++.+...|+.+.... +-+..+..
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~  380 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK  380 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence            1  11234666777788888888888887766654322112334456677778888888888887777542 22344555


Q ss_pred             HHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHH
Q 006437          295 SLIKGFMEAK----MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL----ELKLVPDSYTFCSL  366 (645)
Q Consensus       295 ~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l  366 (645)
                      .+-..|...+    ..+.|..++....+.- ..|...|-.+...+.. ++...++..|..+.    ..+-.+.+...|.+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv  458 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV  458 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence            5555555553    3455555555555442 2345555555444443 33333355555433    34445667777777


Q ss_pred             HHHHHhcCCcccHHHHHhcC-C-----CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHH
Q 006437          367 LSTVCLSGRFSLLPKLVCGL-E-----VEAD------LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL  433 (645)
Q Consensus       367 l~~~~~~~~~~~a~~~~~~~-~-----~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l  433 (645)
                      ...+...|+++.|...|... +     ..++      +.+--.+...+-..++++.|.+.|..+.+.  .|. ...|..+
T Consensus       459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl  536 (1018)
T KOG2002|consen  459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL  536 (1018)
T ss_pred             HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence            77777777777777777221 1     1111      111222334444556777777777777664  233 2233333


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHh---
Q 006437          434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLE---  509 (645)
Q Consensus       434 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---  509 (645)
                      .......+...+|...+.......-. ++..++.+...+.+...+.-|.+-|..+.+.-. .+|+.+.-+|.+.|.+   
T Consensus       537 ~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  537 GCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            32222345666666666666554322 444555555566666666666655554443311 1344444444443321   


Q ss_pred             ---------cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437          510 ---------GGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK  579 (645)
Q Consensus       510 ---------~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  579 (645)
                               .+..++|+++|.+.+.  ..| |...-+.+.-.++..|++..|..+|.++++...+ ...+|..+..+|..
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVE  692 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHH
Confidence                     1245556666666665  233 5556666666666666666666666666654332 34556666666666


Q ss_pred             cCChhHHHHHHHHHHHCCCCCChhhhHHHhhh---cccCCccccccccccccccCCCcchhhccCC
Q 006437          580 FHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS---DETMTPVSLFDGFVPCERRAGNANHLLLNGG  642 (645)
Q Consensus       580 ~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  642 (645)
                      +|++..|+++|+.....-.+-+.. ..++.|.   .+.....+..+.+.+.....|.+..|.||.|
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~-~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRS-EVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            666666666666665554433333 3555555   2333334444444444555556666665544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=3e-20  Score=187.22  Aligned_cols=302  Identities=14%  Similarity=0.079  Sum_probs=216.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCH
Q 006437          265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD---LVFHNVLIDCLSKMGSY  341 (645)
Q Consensus       265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~  341 (645)
                      +...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...+.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            445566666666666666542 22344556666666666666666666666655422111   13455666677777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006437          342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK  421 (645)
Q Consensus       342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  421 (645)
                      ++|..+|+++.+..                                 ..+..++..++..+.+.|++++|.+.++.+.+.
T Consensus       124 ~~A~~~~~~~l~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (389)
T PRK11788        124 DRAEELFLQLVDEG---------------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL  170 (389)
T ss_pred             HHHHHHHHHHHcCC---------------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence            77777777766531                                 223455666777777777777777777777765


Q ss_pred             CCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 006437          422 GFTPDN----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV  497 (645)
Q Consensus       422 ~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  497 (645)
                      +..+..    ..+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|.++++++.+.+.....
T Consensus       171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  249 (389)
T PRK11788        171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS  249 (389)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence            432221    23445666777888888888888888876544 4566777888899999999999999998876422224


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI  577 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  577 (645)
                      .+++.++.+|.+.|++++|...++++.+  ..|+...+..+...+.+.|++++|..+++++.+.  .|+...+..++..+
T Consensus       250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~  325 (389)
T PRK11788        250 EVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH  325 (389)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence            6688899999999999999999999988  4677777788899999999999999999998875  47778888888776


Q ss_pred             Hh---cCChhHHHHHHHHHHHCCCCCChhhh
Q 006437          578 FK---FHSSSSAVNQLVEMCNLGLIPDEMWR  605 (645)
Q Consensus       578 ~~---~g~~~~A~~~~~~m~~~g~~p~~~w~  605 (645)
                      ..   .|+.++++.++++|.+++++|++.|.
T Consensus       326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~  356 (389)
T PRK11788        326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRYR  356 (389)
T ss_pred             hhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence            64   56899999999999999998888854

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=6e-19  Score=168.54  Aligned_cols=440  Identities=18%  Similarity=0.151  Sum_probs=333.2

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006437           87 DHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFK  166 (645)
Q Consensus        87 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  166 (645)
                      ..+..-+.+ .|++.+|.+.-...-... +.+......+-..+.+..+++...+--....+.. +.-..+|+.+...+-.
T Consensus        52 l~lah~~yq-~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   52 LELAHRLYQ-GGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHh-ccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            345555566 789999987665554443 3344455555556666666666555444444432 4457889999999999


Q ss_pred             cCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHH
Q 006437          167 IGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-FEILLNCFCKMGRIAEAYQL  242 (645)
Q Consensus       167 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~  242 (645)
                      .|++++|+.+++.+.   +..+..|..+..++...|+.+.|.+.|.+.++.  .|+... .+.+...+-..|++++|...
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            999999999999876   345568999999999999999999999998886  465543 33445555667999999999


Q ss_pred             HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437          243 LGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN-VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH  321 (645)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  321 (645)
                      +.+.++... -=...|+.|...+-..|+...|+..|++..+.  .|+ ...|..|-..|-..+.+++|...+.+....  
T Consensus       207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--  281 (966)
T KOG4626|consen  207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--  281 (966)
T ss_pred             HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence            998887532 12457888888999999999999999998875  354 467888999999999999999999887764  


Q ss_pred             CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 006437          322 AP-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLS  400 (645)
Q Consensus       322 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~  400 (645)
                      .| ....+..+...|...|.++.|+..|++.++.  .|+                               =...|+.|..
T Consensus       282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~-------------------------------F~~Ay~Nlan  328 (966)
T KOG4626|consen  282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN-------------------------------FPDAYNNLAN  328 (966)
T ss_pred             CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC-------------------------------chHHHhHHHH
Confidence            34 3566777778888999999999999998874  222                               1456777888


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006437          401 YFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHK  480 (645)
Q Consensus       401 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  480 (645)
                      ++-..|++.+|...|+...... +......+.|...+...|.+++|..+|....+-.+. -...++.|...|-+.|++++
T Consensus       329 ALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~  406 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDD  406 (966)
T ss_pred             HHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHH
Confidence            8888888888888888877652 233566777888888888888888888888776554 44567788888889999999


Q ss_pred             HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          481 AIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       481 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      |..-+++.+..  .|+ ...|+.+...|...|+.+.|++.+.+...  +.|. ...++.|...|...|+..+|++-++..
T Consensus       407 Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  407 AIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence            99999988875  365 67888889999999999999999988887  6674 567888888999999999999999888


Q ss_pred             HHCCCCcCHHHHHHHHHH
Q 006437          559 IDARIELDYHTSIRLTKF  576 (645)
Q Consensus       559 ~~~~~~~~~~~~~~l~~~  576 (645)
                      .+..++. +..|-.++.+
T Consensus       483 LklkPDf-pdA~cNllh~  499 (966)
T KOG4626|consen  483 LKLKPDF-PDAYCNLLHC  499 (966)
T ss_pred             HccCCCC-chhhhHHHHH
Confidence            8755442 3344444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.9e-17  Score=175.57  Aligned_cols=425  Identities=12%  Similarity=0.012  Sum_probs=227.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437          122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL  198 (645)
Q Consensus       122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~  198 (645)
                      +......+.+.|++++|+..|++.++.  .|+...|..+..+|.+.|++++|++.++...   +.+...|..+..++...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            344455666677777777777776654  4566666677777777777777777776654   33445666666777777


Q ss_pred             CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006437          199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLW  278 (645)
Q Consensus       199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  278 (645)
                      |++++|+.-|......+...+. ....++..+..    ..+........+.. +++...+..+.. |......+....-+
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            7777777666555433211111 11111111111    11122222222211 111122222222 11111111111111


Q ss_pred             HHHHHcCCCCCh-hchHHHHHHH---HhcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          279 EKMVQNGCSPNV-VTYTSLIKGF---MEAKMFSIAFSFLDMLESEG-HAP-DLVFHNVLIDCLSKMGSYDDALDVYDGLL  352 (645)
Q Consensus       279 ~~m~~~~~~~~~-~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  352 (645)
                      ....+  ..+.. ..+..+...+   ...+++++|...|+...+.+ ..| ....+..+...+...|++++|+..+++..
T Consensus       281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11111  01110 1111111111   12356777777777776653 122 33455666666677777777777777766


Q ss_pred             HCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 006437          353 ELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVG  432 (645)
Q Consensus       353 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  432 (645)
                      +.  .|+                               ....|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus       359 ~l--~P~-------------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~  404 (615)
T TIGR00990       359 EL--DPR-------------------------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH  404 (615)
T ss_pred             Hc--CCC-------------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            53  121                               23344555555666677777777777666542 223555666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437          433 LLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR  512 (645)
Q Consensus       433 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  512 (645)
                      +...+...|++++|...|++.+...+. +...+..+..++.+.|++++|...|++.++.. +.+...|+.+...+...|+
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence            666666777777777777777666554 45556666667777777777777777766542 3346666777777777777


Q ss_pred             HHHHHHHHHHHhhCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437          513 TEEAYILYSQMKHIAVPPNA-Y-------TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS  584 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  584 (645)
                      +++|+..|++..+  +.|+. .       .++..+..+...|++++|.+++++..+.++. +...+..++..+.+.|+++
T Consensus       483 ~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~  559 (615)
T TIGR00990       483 FDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVD  559 (615)
T ss_pred             HHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHH
Confidence            7777777777665  22321 1       1111112223356777777777776665433 3445666777777777777


Q ss_pred             HHHHHHHHHHHC
Q 006437          585 SAVNQLVEMCNL  596 (645)
Q Consensus       585 ~A~~~~~~m~~~  596 (645)
                      +|++.|++..+.
T Consensus       560 eAi~~~e~A~~l  571 (615)
T TIGR00990       560 EALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHH
Confidence            777777776543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=3.7e-19  Score=179.30  Aligned_cols=307  Identities=17%  Similarity=0.108  Sum_probs=227.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhchHHHHHHHHhc
Q 006437          227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN---VVTYTSLIKGFMEA  303 (645)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~  303 (645)
                      ...+...|++++|...|..+.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            334556677777888887777654 23556777777777888888888888877776421111   24566777788888


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437          304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV  383 (645)
Q Consensus       304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  383 (645)
                      |++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+...                      
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------  177 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------------------  177 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence            88888888888887652 3356677888888888888888888888887643211100                      


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437          384 CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH  463 (645)
Q Consensus       384 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  463 (645)
                            .....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...++.....
T Consensus       178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  250 (389)
T PRK11788        178 ------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE  250 (389)
T ss_pred             ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence                  001234456667778888888988888887753 2345567777788888999999999999888776554456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC  543 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  543 (645)
                      +++.++.+|.+.|++++|.+.++++.+..  |+...+..++..+.+.|++++|..+++++.+  ..|+..++..++..+.
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhh
Confidence            67888899999999999999999988764  6666778888999999999999999999887  4688888888887776


Q ss_pred             h---cCCHHHHHHHHHHHHHCCCCcCHH
Q 006437          544 K---ERNIKMVKRLLQDVIDARIELDYH  568 (645)
Q Consensus       544 ~---~g~~~~a~~~~~~~~~~~~~~~~~  568 (645)
                      .   .|+.+++..+++++.+.++.|++.
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            4   458889999999998877766655

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=2.8e-17  Score=150.47  Aligned_cols=433  Identities=15%  Similarity=0.184  Sum_probs=286.7

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCh-HHHHHHHHHHhhCCCCCCHHhHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRI--YWRGEMY-GMVLEAFDEMGRFGFTPNTFARN  158 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~  158 (645)
                      ++++-|.|+...+.  |...++.-+|+.|++.|++.+...-..+++.  |....++ -.-.+.|-.|...| +.+..+| 
T Consensus       115 ~V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-  190 (625)
T KOG4422|consen  115 QVETENNLLKMISS--REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-  190 (625)
T ss_pred             hhcchhHHHHHHhh--cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence            35566777777766  8899999999999999998888876666653  3333333 23356666677666 4444454 


Q ss_pred             HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437          159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE  238 (645)
Q Consensus       159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  238 (645)
                             +.|...+   ++-+..+....+|.++|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-..+   
T Consensus       191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---  257 (625)
T KOG4422|consen  191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---  257 (625)
T ss_pred             -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence                   3454433   555666777889999999999999999999999999888788999999999987654433   


Q ss_pred             HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhH-HHHHH
Q 006437          239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDM----AGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSI-AFSFL  313 (645)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~  313 (645)
                       .+++.+|......||..|+|+++.+..+.|+++.    |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++
T Consensus       258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i  336 (625)
T KOG4422|consen  258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI  336 (625)
T ss_pred             -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence             7899999999999999999999999999998765    56788899999999999999999999998887754 44444


Q ss_pred             HHHHh----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCcccHHHH
Q 006437          314 DMLES----EGHAP----DLVFHNVLIDCLSKMGSYDDALDVYDGLLELK---LVPDSYTFCSLLSTVCLSGRFSLLPKL  382 (645)
Q Consensus       314 ~~~~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~  382 (645)
                      .++..    +.++|    |...|...+..|.+..+.+-|.++..-+....   ..++.                      
T Consensus       337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~----------------------  394 (625)
T KOG4422|consen  337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD----------------------  394 (625)
T ss_pred             HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH----------------------
Confidence            44433    22333    44566777888888889888888876655321   01110                      


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 006437          383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA  462 (645)
Q Consensus       383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  462 (645)
                            .....-|..+....|+....+.....|+.|.-.-+-|+..+...++++..-.+.++-.-+++..++..|.....
T Consensus       395 ------~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~  468 (625)
T KOG4422|consen  395 ------QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS  468 (625)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence                  01123455666777777778888888888887777778888888888888888888888888877776654444


Q ss_pred             HHHHHHHHHHHhcC-CH--------------------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          463 HVHTAIVDRLIEAG-RC--------------------HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYS  521 (645)
Q Consensus       463 ~~~~~l~~~~~~~g-~~--------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  521 (645)
                      ....-++..+++.. ..                    +.....-.++.+..  ......+...-.+.+.|+.++|.+++.
T Consensus       469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~  546 (625)
T KOG4422|consen  469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLG  546 (625)
T ss_pred             HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHH
Confidence            33333333333322 00                    00000111122221  233344445555555566666666555


Q ss_pred             HHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          522 QMKHIA----VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       522 ~m~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .+.+.+    ..|......-+++.....++...|...++.|...+
T Consensus       547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            553322    11222223344444445555555555555554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.4e-16  Score=160.72  Aligned_cols=536  Identities=12%  Similarity=0.050  Sum_probs=382.7

Q ss_pred             HHHhcCCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 006437           55 STLLNCPSDLIALSFFIWCAK-QRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWR--  131 (645)
Q Consensus        55 ~~l~~~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--  131 (645)
                      .+....+++..|+.+|..+.. .|.+.+|+.+-  +-..+.+ -++.+.|...|++..+.. +.+..++..|.-.-..  
T Consensus       172 ~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~k-l~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~  247 (1018)
T KOG2002|consen  172 RIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWK-LGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN  247 (1018)
T ss_pred             HHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHh-ccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence            344467899999999988655 55666665332  2245566 689999999999998875 2344444444333222  


Q ss_pred             -cCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCcchH
Q 006437          132 -GEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPN------FLSFNIALCNLCKLNDVSNV  204 (645)
Q Consensus       132 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a  204 (645)
                       ...+..+++.+...-... +-++.+.+.|...|.-.|++..+..+...+...+      ..+|-.+.++|...|++++|
T Consensus       248 d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  248 DSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             chHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence             245667777777766554 5688899999999999999999999988765222      34588899999999999999


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----CHHHHHHHHHH
Q 006437          205 KDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR----RLDMAGYLWEK  280 (645)
Q Consensus       205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~  280 (645)
                      ...|.+..+..-.-....+.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+    ..+.|..++.+
T Consensus       327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            9999888776422223445567899999999999999999998863 445667777777777764    45667777776


Q ss_pred             HHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 006437          281 MVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDML----ESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL--  354 (645)
Q Consensus       281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--  354 (645)
                      ....- +.|...|-.+...+.... ...++..|...    ...+-.+.....|.+...+...|+++.|...|......  
T Consensus       406 ~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~  483 (1018)
T KOG2002|consen  406 VLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL  483 (1018)
T ss_pred             HHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence            66542 446777777766665544 44446666543    45555678888999999999999999999999988764  


Q ss_pred             -CCCCCH------hhHHHHHHHHHhcCCcccHHHHHhcC-CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006437          355 -KLVPDS------YTFCSLLSTVCLSGRFSLLPKLVCGL-EVEADLV-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP  425 (645)
Q Consensus       355 -~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  425 (645)
                       ...++.      .+--.+...+-..++.+.|.+++... ...|+.+ .|--+.......+...+|...++...+.. ..
T Consensus       484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~  562 (1018)
T KOG2002|consen  484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS  562 (1018)
T ss_pred             hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence             122333      12333444555667888888888442 2344433 23333322233467788888888877643 22


Q ss_pred             CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCC
Q 006437          426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNN-PAVNAHVHTAIVDRLIE------------AGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~  492 (645)
                      +...++.+...+.....+..|.+-|+.+.+.- ..+|+++.-+|.+.|.+            .+..++|+++|.+.+...
T Consensus       563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            33444445556777777878887776666552 23577777778776653            245788999999988765


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHH
Q 006437          493 YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID-ARIELDYHTSI  571 (645)
Q Consensus       493 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~  571 (645)
                       |-|...-|-+.-.++..|++.+|..+|.+..+.. .-+..+|..+...|...|++..|+++|+...+ ....-++.+..
T Consensus       643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~  720 (1018)
T KOG2002|consen  643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH  720 (1018)
T ss_pred             -cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence             5577888888888999999999999999999864 34567888999999999999999999998875 44455788999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          572 RLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       572 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .|.+++.+.|++.+|.+.+.....  ..|...
T Consensus       721 ~Lara~y~~~~~~eak~~ll~a~~--~~p~~~  750 (1018)
T KOG2002|consen  721 YLARAWYEAGKLQEAKEALLKARH--LAPSNT  750 (1018)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH--hCCccc
Confidence            999999999999999998777764  455444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=1.3e-16  Score=169.26  Aligned_cols=425  Identities=13%  Similarity=0.008  Sum_probs=285.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437           86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF  165 (645)
Q Consensus        86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  165 (645)
                      +......+.+ .|+++.|+..|++....  .|+...|..+..+|.+.|++++|++.++..++.. +.+..++..+..+|.
T Consensus       130 ~k~~G~~~~~-~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       130 LKEKGNKAYR-NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4445556667 79999999999998876  4778889999999999999999999999999875 456788999999999


Q ss_pred             hcCCHhHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437          166 KIGRVDLGIKVLKETQLP---NFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQL  242 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  242 (645)
                      ..|++++|+..|......   +......++..+..    ..+........+.. +++...+..+.. +...........-
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  279 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG  279 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence            999999999888654321   11111122211111    12223333333321 122222222222 2221111111111


Q ss_pred             HHHHHHcCCCcCH-HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-ChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437          243 LGLMITLGTSLSV-NAWTVLIDG---FRRLRRLDMAGYLWEKMVQNG-CSP-NVVTYTSLIKGFMEAKMFSIAFSFLDML  316 (645)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~  316 (645)
                      +....+  ..+.. ..+..+...   ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|...++..
T Consensus       280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka  357 (615)
T TIGR00990       280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS  357 (615)
T ss_pred             hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            111111  11110 111111111   123478999999999988754 223 4566778888888999999999999998


Q ss_pred             HhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHH
Q 006437          317 ESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVY  395 (645)
Q Consensus       317 ~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  395 (645)
                      .+.  .|+ ...|..+...+...|++++|...|+++.+..  |                               .+...|
T Consensus       358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p-------------------------------~~~~~~  402 (615)
T TIGR00990       358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S-------------------------------EDPDIY  402 (615)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-------------------------------CCHHHH
Confidence            876  343 5577788888999999999999999887742  2                               234556


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437          396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA  475 (645)
Q Consensus       396 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  475 (645)
                      ..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++..+...+. +...++.+..++...
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~  480 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQ  480 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence            667777788888888888888887753 234556667777788888999999998888876654 677788888888889


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVV------SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~  548 (645)
                      |++++|.+.|++.....-..+..      .++.....+...|++++|.+++++..+  +.| +...+..+...+...|++
T Consensus       481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCH
Confidence            99999999998887753111111      122222233446889999999998877  345 455788888899999999


Q ss_pred             HHHHHHHHHHHHC
Q 006437          549 KMVKRLLQDVIDA  561 (645)
Q Consensus       549 ~~a~~~~~~~~~~  561 (645)
                      ++|.+.+++..+.
T Consensus       559 ~eAi~~~e~A~~l  571 (615)
T TIGR00990       559 DEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=2e-15  Score=159.66  Aligned_cols=444  Identities=11%  Similarity=0.028  Sum_probs=276.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437           51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDV-QSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY  129 (645)
Q Consensus        51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  129 (645)
                      ..-..+..+.|++..|+..|+.+.+..+  .++ ..+ .++.++.. .|+.++|+..+++.... ...+......+...+
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~-~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly  112 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGW-AGRDQEVIDVYERYQSS-MNISSRGLASAARAY  112 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHH-cCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence            3334455588999999999999987655  232 333 88888888 79999999999998722 123444455556788


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh--hhHHHHHHHHHhcCCcchHHHH
Q 006437          130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF--LSFNIALCNLCKLNDVSNVKDV  207 (645)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~  207 (645)
                      ...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++.+.++  ..+..++..+...++..+|++.
T Consensus       113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence            89999999999999999875 55677888888999999999999999999874443  3443333333345666569999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh------HHHHHHHH-----HhcCC---HHH
Q 006437          208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA------WTVLIDGF-----RRLRR---LDM  273 (645)
Q Consensus       208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~li~~~-----~~~~~---~~~  273 (645)
                      ++++.+.. +-+...+..+..++.+.|-...|.++...-... +.+....      ...+++.-     ....+   .+.
T Consensus       192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~  269 (822)
T PRK14574        192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK  269 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            99999874 335777888899999999998888777653321 1111110      01111100     01112   233


Q ss_pred             HHHHHHHHHHc-CCCCCh-hc----hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437          274 AGYLWEKMVQN-GCSPNV-VT----YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDV  347 (645)
Q Consensus       274 a~~~~~~m~~~-~~~~~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  347 (645)
                      |+.-++.+... +-.|.. ..    ..-.+-++...+++.++++.|+.+...|.+....+-..+..+|...+++++|..+
T Consensus       270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l  349 (822)
T PRK14574        270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI  349 (822)
T ss_pred             HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence            44444444431 111221 11    1233445666677777777777777666554445666677777777777777777


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----
Q 006437          348 YDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF----  423 (645)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----  423 (645)
                      |..+........                           ...++......|..+|...+++++|..+++.+.+...    
T Consensus       350 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~  402 (822)
T PRK14574        350 LSSLYYSDGKTF---------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG  402 (822)
T ss_pred             HHHHhhcccccc---------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence            777655321100                           1122333456677788888888888888888876311    


Q ss_pred             -------CCCH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          424 -------TPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY  493 (645)
Q Consensus       424 -------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  493 (645)
                             .|+.   ..+..++..+...|++.+|++.++.+....|. |..+...+.+.+...|.+.+|++.++.+.... 
T Consensus       403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-  480 (822)
T PRK14574        403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-  480 (822)
T ss_pred             ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-
Confidence                   0111   12233444555666666666666666655555 56666666666666666666666665554442 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437          494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  533 (645)
                      |.+..+....+.++...+++++|..+.+.+.+  ..|+..
T Consensus       481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~  518 (822)
T PRK14574        481 PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI  518 (822)
T ss_pred             CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence            33455555555566666666666666666655  345433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=5.6e-17  Score=171.23  Aligned_cols=328  Identities=15%  Similarity=0.085  Sum_probs=150.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437          122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL  198 (645)
Q Consensus       122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~  198 (645)
                      ...++..+.+.|++++|..+++...... +-+...+..++.+....|++++|.+.|+++.   +.+...+..+...+.+.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            4455666667777777777777666543 2334444444455555666666666655543   22333444444455555


Q ss_pred             CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006437          199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLW  278 (645)
Q Consensus       199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  278 (645)
                      |++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...+
T Consensus       124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence            55555555555554431 1123344444444445555555555444443332211 1111111 1234444444444444


Q ss_pred             HHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006437          279 EKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVP  358 (645)
Q Consensus       279 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  358 (645)
                      +.+.+                                   ....++...+..+...+...|++++|...++++.+..  |
T Consensus       201 ~~~l~-----------------------------------~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p  243 (656)
T PRK15174        201 RALLP-----------------------------------FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--L  243 (656)
T ss_pred             HHHHh-----------------------------------cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence            44433                                   2111122222223334444455555555554444321  1


Q ss_pred             CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQ----AVKLYNTMLDKGFTPDNYSFVGLL  434 (645)
Q Consensus       359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll  434 (645)
                                                     .+...+..+...+...|++++    |+..|++..+.. +.+...+..+.
T Consensus       244 -------------------------------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg  291 (656)
T PRK15174        244 -------------------------------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYA  291 (656)
T ss_pred             -------------------------------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence                                           112223333334444444442    444454444431 12233444445


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCH
Q 006437          435 RGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV-VSYTVAIRGLLEGGRT  513 (645)
Q Consensus       435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~  513 (645)
                      ..+...|++++|...+++.....+. +...+..+..++.+.|++++|...++++...+  |+. ..+..+..++...|+.
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~  368 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKT  368 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCH
Confidence            5555555555555555555544433 33344445555555555555555555555432  222 2222334445555555


Q ss_pred             HHHHHHHHHHhh
Q 006437          514 EEAYILYSQMKH  525 (645)
Q Consensus       514 ~~A~~~~~~m~~  525 (645)
                      ++|...|++..+
T Consensus       369 deA~~~l~~al~  380 (656)
T PRK15174        369 SEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=3.5e-16  Score=168.96  Aligned_cols=416  Identities=10%  Similarity=0.007  Sum_probs=221.0

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM  161 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  161 (645)
                      ++....-.+.+... .|+.++|++++.+..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus        14 ~~~~~~d~~~ia~~-~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la   90 (765)
T PRK10049         14 SNNQIADWLQIALW-AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI   90 (765)
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            44444444555556 567777777776665522 3455556666667777777777777777766542 33455566666


Q ss_pred             HHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437          162 DVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE  238 (645)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  238 (645)
                      .++...|++++|+..+++..   +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence            66677777777777776654   33344 66666666677777777777777766531 134444555666666677777


Q ss_pred             HHHHHHHHHHcCCCcCH------HhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCChh-chH----HHHH
Q 006437          239 AYQLLGLMITLGTSLSV------NAWTVLIDGFR-----RLRRL---DMAGYLWEKMVQN-GCSPNVV-TYT----SLIK  298 (645)
Q Consensus       239 a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~  298 (645)
                      |.+.++....   .|+.      .....++....     ..+++   ++|++.++.+.+. ...|+.. .+.    ..+.
T Consensus       169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~  245 (765)
T PRK10049        169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG  245 (765)
T ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence            7766665443   1111      01112222221     12233   6677777777743 1122221 111    1133


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437          299 GFMEAKMFSIAFSFLDMLESEGHA-PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS  377 (645)
Q Consensus       299 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  377 (645)
                      .+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+++.+..  |..                 
T Consensus       246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~-----------------  305 (765)
T PRK10049        246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETI-----------------  305 (765)
T ss_pred             HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCC-----------------
Confidence            445668888888888888776532 322 12224667888888888888888776532  110                 


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437          378 LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN  457 (645)
Q Consensus       378 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  457 (645)
                                ..........+..++...|++++|..+++.+.+.. ++....+.                     .....
T Consensus       306 ----------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~---------------------~~~~~  353 (765)
T PRK10049        306 ----------ADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG---------------------SPTSI  353 (765)
T ss_pred             ----------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC---------------------CCCCC
Confidence                      00112334455556778888888888888887652 11110000                     00000


Q ss_pred             CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHH
Q 006437          458 PAVN-AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTY  535 (645)
Q Consensus       458 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~  535 (645)
                      +.++ ...+..+...+...|++++|+++++++.... |.+...+..+...+...|++++|++.+++..+  ..|+ ...+
T Consensus       354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~  430 (765)
T PRK10049        354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLE  430 (765)
T ss_pred             CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence            1100 1122333444444455555555555544432 33344455555555555555555555555544  3342 3333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ......+...|++++|..+++++++
T Consensus       431 ~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        431 VEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3444444455555555555555554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=1.2e-16  Score=172.68  Aligned_cols=424  Identities=10%  Similarity=0.021  Sum_probs=274.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHH
Q 006437          116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIAL  192 (645)
Q Consensus       116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll  192 (645)
                      +.++....-.+......|+.++|++++....... +.+...+..+..++...|++++|.++|++..   +.+...+..+.
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la   90 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI   90 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4566667777888888999999999999887632 5566678888889999999999999998853   44566677777


Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 006437          193 CNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLD  272 (645)
Q Consensus       193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  272 (645)
                      ..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+..+. +...+..+...+...+..+
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence            88888899999999998887763 23455 777888888889999999999988886433 5556666777788888888


Q ss_pred             HHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---HHHHHHHH
Q 006437          273 MAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY---DDALDVYD  349 (645)
Q Consensus       273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~  349 (645)
                      .|.+.++....   .|+..   .-+       ....+....+..              +.......+++   ++|++.++
T Consensus       168 ~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~  220 (765)
T PRK10049        168 PALGAIDDANL---TPAEK---RDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYD  220 (765)
T ss_pred             HHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHH
Confidence            88888876553   23310   000       000000000000              00000111112   45555555


Q ss_pred             HHHHC-CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH
Q 006437          350 GLLEL-KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFT-PDN  427 (645)
Q Consensus       350 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~  427 (645)
                      .+.+. ...|+...  .+                         .......+..+...|++++|+..|+.+.+.+.. |+.
T Consensus       221 ~ll~~~~~~p~~~~--~~-------------------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~  273 (765)
T PRK10049        221 ALEALWHDNPDATA--DY-------------------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW  273 (765)
T ss_pred             HHHhhcccCCccch--HH-------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence            55532 11121100  00                         000011122233445666666666666554321 221


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------C
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV---NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK-----------Y  493 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~  493 (645)
                       ....+..++...|++++|...|+.+....+..   .......+..++.+.|++++|.++++.+....           -
T Consensus       274 -a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~  352 (765)
T PRK10049        274 -AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS  352 (765)
T ss_pred             -HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence             11223445566666666666666655443221   12334445555666666777766666665542           0


Q ss_pred             CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437          494 PLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT  569 (645)
Q Consensus       494 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  569 (645)
                      .|+   ...+..+...+...|+.++|+++++++...  .| +...+..+...+...|++++|++.++++.+..+. +...
T Consensus       353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l  429 (765)
T PRK10049        353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINL  429 (765)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHH
Confidence            123   235667778889999999999999999874  45 6788899999999999999999999999986654 5778


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          570 SIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       570 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +..++..+.+.|++++|.++++++.+  ..|+..
T Consensus       430 ~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~  461 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP  461 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence            88888899999999999999999985  566655

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=2e-16  Score=167.12  Aligned_cols=388  Identities=12%  Similarity=0.038  Sum_probs=286.6

Q ss_pred             HhcCCHhHHHHHHhhcCC------CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437          165 FKIGRVDLGIKVLKETQL------PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE  238 (645)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  238 (645)
                      .+..+|+.-.-+|...++      .+..-...++..+.+.|++++|..+++........ +...+..++.+....|++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence            345566665555555441      12223445667778889999999999888876433 34455566677778999999


Q ss_pred             HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437          239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES  318 (645)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  318 (645)
                      |...++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999998864 3356778888888999999999999999988752 33566778888889999999999999988766


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHH
Q 006437          319 EGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNAL  398 (645)
Q Consensus       319 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l  398 (645)
                      ....+ ...+..+ ..+...|++++|...++.+.+....                                ++...+..+
T Consensus       173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~--------------------------------~~~~~~~~l  218 (656)
T PRK15174        173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFAL--------------------------------ERQESAGLA  218 (656)
T ss_pred             hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC--------------------------------cchhHHHHH
Confidence            53322 2233223 3477889999999998887764211                                112233444


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          399 LSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE----AINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       399 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      ...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++    |...++......+. +...+..+...+.+
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~  296 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence            567788999999999999998864 3356677788889999999986    89999999988776 78889999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY-TYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~  553 (645)
                      .|++++|...++++.+.. +.+...+..+..++.+.|++++|+..++++.+  ..|+.. .+..+..++...|+.++|..
T Consensus       297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999875 44577788899999999999999999999987  456543 34445778899999999999


Q ss_pred             HHHHHHHCCCCcCHHHHH----HHHHHHHhcCChhHHHHHHHHHH
Q 006437          554 LLQDVIDARIELDYHTSI----RLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .++++.+..++-....|.    .+..++...+..++......++.
T Consensus       374 ~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~  418 (656)
T PRK15174        374 VFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA  418 (656)
T ss_pred             HHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence            999998765543333443    33344444555554444555543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=1.4e-15  Score=160.86  Aligned_cols=427  Identities=12%  Similarity=0.027  Sum_probs=217.6

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhH-HHH--HHHHHhcCCcch
Q 006437          129 YWRGEMYGMVLEAFDEMGRFGFTPNT--FARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSF-NIA--LCNLCKLNDVSN  203 (645)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--l~~~~~~g~~~~  203 (645)
                      ..+.|+++.|+..|++..+..  |+.  .++ .++..+...|+.++|+..+++...|+...+ ..+  ...+...|++++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            346666666776666666543  331  233 666666666777777777766664433332 222  335555677777


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          204 VKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       204 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      |+++|+++.+... -+...+..++..+...++.++|++.++.+.+.  .|+...+..++..+...++..+|++.++++.+
T Consensus       121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            7777777766532 23455556666677777777777777777654  34444444444444445555557777777776


Q ss_pred             cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH------HHHHHHH---H--hcC---CHHHHHHHHH
Q 006437          284 NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFH------NVLIDCL---S--KMG---SYDDALDVYD  349 (645)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~~---~~~~a~~~~~  349 (645)
                      .. +-+...+..+..++.+.|-...|+++..+-... +.+...-.      ...++.-   .  ...   -.+.|+.-++
T Consensus       198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~  275 (822)
T PRK14574        198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ  275 (822)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            53 234555666677777777777776655542211 11110000      0001000   0  011   1234444444


Q ss_pred             HHHHC-CCCCCH-hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006437          350 GLLEL-KLVPDS-YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN  427 (645)
Q Consensus       350 ~~~~~-~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  427 (645)
                      .+... +-.|.. ..|.                            ...--.+-++...|+..++++.|+.|...+.+...
T Consensus       276 ~l~~~~~~~p~~~~~~~----------------------------~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~  327 (822)
T PRK14574        276 NLLTRWGKDPEAQADYQ----------------------------RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD  327 (822)
T ss_pred             HHHhhccCCCccchHHH----------------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence            44431 111211 1111                            01112233445555556666666665555543333


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNP-----AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY---------  493 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------  493 (645)
                      .+-..+..+|...+++++|..+++.+.....     .++......|..+|...+++++|..+++++.+...         
T Consensus       328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~  407 (822)
T PRK14574        328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP  407 (822)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence            4455555555556666666666665544321     11222234555555556666666666655554210         


Q ss_pred             --CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 006437          494 --PLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDY  567 (645)
Q Consensus       494 --~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  567 (645)
                        .||   ...+..++..+...|+..+|++.++++..  ..| |......+...+...|.+.+|+++++.+....+. +.
T Consensus       408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~  484 (822)
T PRK14574        408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SL  484 (822)
T ss_pred             CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cH
Confidence              011   11223344445555666666666666654  233 5555555566666666666666666554443322 44


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          568 HTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .+....+.++...|++++|.++.++..
T Consensus       485 ~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        485 ILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            455555555555566666655555554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.2e-14  Score=133.39  Aligned_cols=428  Identities=13%  Similarity=0.099  Sum_probs=287.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC--HhHHH-HHHhhcC---CCChhhHHHHHHH
Q 006437          121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR--VDLGI-KVLKETQ---LPNFLSFNIALCN  194 (645)
Q Consensus       121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~-~~~~~~~---~~~~~~~~~ll~~  194 (645)
                      +=+.+++ ....|.+.++.-+|+.|.+.|.+.+..+-..|++..+-.+.  +.-|. +-|-.|.   +.+..+|      
T Consensus       118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------  190 (625)
T KOG4422|consen  118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------  190 (625)
T ss_pred             chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence            4444444 34678899999999999999999998888877766544332  22111 1122221   2222222      


Q ss_pred             HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437          195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA  274 (645)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  274 (645)
                        +.|...   +++-+..    +-+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+    
T Consensus       191 --K~G~vA---dL~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----  257 (625)
T KOG4422|consen  191 --KSGAVA---DLLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----  257 (625)
T ss_pred             --ccccHH---HHHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----
Confidence              122221   1332221    235678888888888888888888888888877667788888888766443222    


Q ss_pred             HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHH
Q 006437          275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSI----AFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD-ALDVYD  349 (645)
Q Consensus       275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~  349 (645)
                      .+++.+|.+..+.||..|+|+++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~  337 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN  337 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence            6788888888888888888888888888887654    45677888888888888888888888888777644 444444


Q ss_pred             HHHH----CCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 006437          350 GLLE----LKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG---  422 (645)
Q Consensus       350 ~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---  422 (645)
                      ++..    ..++|-                            ...|...|..-+..|.+..+.+-|.++-.-+....   
T Consensus       338 dI~N~ltGK~fkp~----------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~  389 (625)
T KOG4422|consen  338 DIQNSLTGKTFKPI----------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK  389 (625)
T ss_pred             HHHHhhccCcccCC----------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence            4433    112221                            11234455666666777777777766655443221   


Q ss_pred             -CCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437          423 -FTPD---NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV  498 (645)
Q Consensus       423 -~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  498 (645)
                       +.|+   ..-|..+....|+....+.....|+.|+.+-.-|+..+...++++....+.++-.-+++.+++.-|..-+..
T Consensus       390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~  469 (625)
T KOG4422|consen  390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD  469 (625)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence             2333   234667777888999999999999999999888889999999999999999999999999988877655555


Q ss_pred             hHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          499 SYTVAIRGLLEGG-RT--------EE-----AYILY-------SQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       499 ~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      .-..++..+++.+ +.        ..     |..++       .+|..  ..-....++..+-.+.+.|..++|.+++..
T Consensus       470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l  547 (625)
T KOG4422|consen  470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGL  547 (625)
T ss_pred             HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence            5555555555543 11        11     11111       12333  234556677778888999999999999999


Q ss_pred             HHHCCC-C---cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006437          558 VIDARI-E---LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGL  598 (645)
Q Consensus       558 ~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  598 (645)
                      +.+.+- .   |.......+++...+.+...+|...++-|...+.
T Consensus       548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence            965432 2   2334445667777788889999999999876543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=4.2e-13  Score=129.96  Aligned_cols=448  Identities=12%  Similarity=0.055  Sum_probs=291.8

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhc---CCCChhhHHHHHHHHHhcCCcchHHHH
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKET---QLPNFLSFNIALCNLCKLNDVSNVKDV  207 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~  207 (645)
                      ...+.+.|.-++....+. ++.+...|.    +|++..-++.|..++++.   .+.+...|-+....--.+|+.+...++
T Consensus       388 elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            344555566666666654 233443333    444555566666666554   356667776666666667777777777


Q ss_pred             HHH----HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          208 IGM----MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS--VNAWTVLIDGFRRLRRLDMAGYLWEKM  281 (645)
Q Consensus       208 ~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m  281 (645)
                      +++    +...|+..+...|..=...|-..|..-.+..+....+..|+...  ..+|+.-...|.+.+.++-|..+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            654    34557777777777777777777888888888777777665432  347777777888888888888888877


Q ss_pred             HHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006437          282 VQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSY  361 (645)
Q Consensus       282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  361 (645)
                      .+- .+-+...|......--..|..+....+|++....- +-....|-.....+-..|+...|..++....+.... +..
T Consensus       543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see  619 (913)
T KOG0495|consen  543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE  619 (913)
T ss_pred             Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence            754 23355566666666666777888888888877762 223344444455666778888888888888775422 567


Q ss_pred             hHHHHHHHHHhcCCcccHHHHH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHc
Q 006437          362 TFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCG  439 (645)
Q Consensus       362 ~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~  439 (645)
                      .+-..+.......+++.|..+| +.....|+...|.--+...-..++.++|++++++..+.  -|+ ...|..+.+.+-+
T Consensus       620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~  697 (913)
T KOG0495|consen  620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ  697 (913)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence            7777777778888888888888 33445666667766666666678888888888877775  344 4456666677777


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL  519 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  519 (645)
                      .++++.|...|..-.+.-+. .+..|-.+...--+.|.+-+|..++++..-++ |-+...|-..|+.-.+.|+.+.|..+
T Consensus       698 ~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l  775 (913)
T KOG0495|consen  698 MENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL  775 (913)
T ss_pred             HHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence            78888888877776655443 56677777777788888888888888877665 55777888888888888888888877


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          520 YSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       520 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ..+.++. ++.+...|.--|...-+.++-......++   +  .+-|++..-.+...+....++++|.+.|.+....
T Consensus       776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~  846 (913)
T KOG0495|consen  776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK  846 (913)
T ss_pred             HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7666542 22233344444444433333222222222   2  1224455555555555555555555555555533

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.77  E-value=2.3e-12  Score=124.90  Aligned_cols=511  Identities=12%  Similarity=0.055  Sum_probs=397.5

Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006437           68 SFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGR  147 (645)
Q Consensus        68 ~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  147 (645)
                      ++++.+...-+  .|...|.....     -.+.+.|+-++++..+. ++.+.+.+.    ++++..-++.|..+++...+
T Consensus       367 RVlRKALe~iP--~sv~LWKaAVe-----lE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe  434 (913)
T KOG0495|consen  367 RVLRKALEHIP--RSVRLWKAAVE-----LEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKARE  434 (913)
T ss_pred             HHHHHHHHhCC--chHHHHHHHHh-----ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence            45555544432  35555654432     23455688888877665 344555444    55667788999999999876


Q ss_pred             CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437          148 FGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--------LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN  219 (645)
Q Consensus       148 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  219 (645)
                      . ++.+...|-+-...=-..|+.+...++.++..        .-+...|-.=...+-..|..-.+..+....+..|+.-.
T Consensus       435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee  513 (913)
T KOG0495|consen  435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE  513 (913)
T ss_pred             h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence            5 67888899887777788999999999888653        34455676667777788888888888888887776532


Q ss_pred             --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHH
Q 006437          220 --VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLI  297 (645)
Q Consensus       220 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  297 (645)
                        ..||..-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|++.... ++.....|-...
T Consensus       514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~a  591 (913)
T KOG0495|consen  514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYA  591 (913)
T ss_pred             hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence              458889999999999999999999999876 3446678888887778889999999999999875 445667777778


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437          298 KGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS  377 (645)
Q Consensus       298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  377 (645)
                      ..+-..|+...|..++.+..+.... +...|-..+..-..+.+++.|..+|.+...  ..|+..+|..-+....-.+..+
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence            8888899999999999999887433 667788888888999999999999998876  4678888888888888889999


Q ss_pred             cHHHHHh-cCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006437          378 LLPKLVC-GLEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM  455 (645)
Q Consensus       378 ~a~~~~~-~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  455 (645)
                      +|.++++ .+..-|+. -.|-.+-+.+-+.++.+.|...|..-.+. ++-....|..+...=-+.|.+-.|..+++...-
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            9999993 34455653 46777777888888899888888765443 333444565666666678899999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437          456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY  535 (645)
Q Consensus       456 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  535 (645)
                      ++++ +...|-..+.+-.+.|+.+.|..+..++++. +|.+...|..-|....+.++-......+++     +.-|++.+
T Consensus       748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVl  820 (913)
T KOG0495|consen  748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVL  820 (913)
T ss_pred             cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhH
Confidence            9988 8889999999999999999999999999876 466778888888877777765555544443     35678889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhh
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWR  605 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~  605 (645)
                      ..+...+....++++|++.|.+..+.+.. ...+|.-+...+.++|.-++-.++++...+....-...|.
T Consensus       821 laia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~  889 (913)
T KOG0495|consen  821 LAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ  889 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence            99999999999999999999999987665 6778888999999999999999999999855433334465

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=6.4e-12  Score=117.35  Aligned_cols=425  Identities=12%  Similarity=0.075  Sum_probs=247.3

Q ss_pred             CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHH
Q 006437           60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKA-QTFLLFLRIYWRGEMYGMV  138 (645)
Q Consensus        60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a  138 (645)
                      +++.+.|..+|+.+.....  .+...|-.-+..-.+ +.....|..++++....  .|-. ..+...+..=-..|++..|
T Consensus        86 q~e~~RARSv~ERALdvd~--r~itLWlkYae~Emk-nk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ga  160 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDY--RNITLWLKYAEFEMK-NKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGA  160 (677)
T ss_pred             HHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHh-hhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHH
Confidence            4455677778877766543  466677777777777 67778888888877765  2333 2344444444556788888


Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC-C
Q 006437          139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK-G  215 (645)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~  215 (645)
                      .++|+.-...  +|+..+|++.++.=.+...++.|..++++..  .|++.+|-....--.+.|+...+..+|+...+. |
T Consensus       161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            8888877654  7888888888888888888888888888765  777777777777777788888888888776543 1


Q ss_pred             C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHH--------HHHHHHcC
Q 006437          216 F-YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRLDMAGYL--------WEKMVQNG  285 (645)
Q Consensus       216 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~  285 (645)
                      - ..+...+.++...-.++..++.|.-+|.-....-+.. ....|......=-+-|+.....+.        |+.+.+.+
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence            1 1122334444444455667777888877776642211 134555555554555665444332        33333332


Q ss_pred             CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHH---HHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          286 CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL-------VFHNV---LIDCLSKMGSYDDALDVYDGLLELK  355 (645)
Q Consensus       286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~  355 (645)
                       +-|-.+|-..++.-...|+.+...++|+..... ++|-.       ..|-.   .+-.-....+.+.+.++|+..++. 
T Consensus       319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-  395 (677)
T KOG1915|consen  319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-  395 (677)
T ss_pred             -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence             346677777777777778888888888887765 33321       11111   111122456777777777777762 


Q ss_pred             CCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          356 LVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR  435 (645)
Q Consensus       356 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  435 (645)
                      ++....||..+--+|+                            ..-.++.+...|.+++...+  |.-|-..+|...|.
T Consensus       396 IPHkkFtFaKiWlmyA----------------------------~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe  445 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYA----------------------------QFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE  445 (677)
T ss_pred             cCcccchHHHHHHHHH----------------------------HHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence            3334455554433332                            22334444555555554332  23445555555555


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHH
Q 006437          436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTE  514 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  514 (645)
                      .=.+.+.++.+..+++..+.-+|. +..+|......-...|+.++|..+|+-+++... ......|-+.|.--...|.++
T Consensus       446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e  524 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE  524 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence            555555555555555555555544 555555555555555555555555555554320 011233444444444555555


Q ss_pred             HHHHHHHHHhh
Q 006437          515 EAYILYSQMKH  525 (645)
Q Consensus       515 ~A~~~~~~m~~  525 (645)
                      .|..+|+++++
T Consensus       525 kaR~LYerlL~  535 (677)
T KOG1915|consen  525 KARALYERLLD  535 (677)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.72  E-value=4.4e-12  Score=127.95  Aligned_cols=534  Identities=12%  Similarity=0.073  Sum_probs=294.6

Q ss_pred             cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006437           59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMV  138 (645)
Q Consensus        59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  138 (645)
                      .+|+.+.|.+++..+.++.+  ..+..|.+|..++-. .|+.+.+...+-...... +-|...|..+.....+.|++.+|
T Consensus       151 arg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence            44667777777766666554  456666666666666 566666655544333332 23445555555555566666666


Q ss_pred             HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCC-----------------------------------
Q 006437          139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLP-----------------------------------  183 (645)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------------------------------  183 (645)
                      .-.|.+.++.. +++....-.-+..|-+.|+...|.+-|.++...                                   
T Consensus       227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            66666666554 334333334455555566666665555544311                                   


Q ss_pred             ---------ChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC---------------------------CCCHhhHHHHH
Q 006437          184 ---------NFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF---------------------------YPNVRMFEILL  227 (645)
Q Consensus       184 ---------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll  227 (645)
                               +...+++++..+.+...++.+......+.....                           .++... ..+.
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence                     112334444444444444444444443333110                           111111 0111


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCC
Q 006437          228 NCFCKMGRIAEAYQLLGLMITLG--TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKM  305 (645)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  305 (645)
                      -++...+..+....+...+....  +.-++..|.-+.++|...|++.+|+++|..+.......+...|-.+..+|...|.
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence            22222333333333333333333  2234556777888888888899999988888876544566788888888888888


Q ss_pred             hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHhcCCcc
Q 006437          306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE--------LKLVPDSYTFCSLLSTVCLSGRFS  377 (645)
Q Consensus       306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~  377 (645)
                      ++.|.+.|+....... -+...-..|...+-+.|+.++|.+.+..+..        .+..|+..........+...|+.+
T Consensus       465 ~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E  543 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE  543 (895)
T ss_pred             HHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence            9999888888877521 1333344566677788888888888887542        223344434344444445555443


Q ss_pred             cHHHH----HhcC-------------------------------------------------CCCC-----------CH-
Q 006437          378 LLPKL----VCGL-------------------------------------------------EVEA-----------DL-  392 (645)
Q Consensus       378 ~a~~~----~~~~-------------------------------------------------~~~~-----------~~-  392 (645)
                      +-...    +...                                                 ...+           +. 
T Consensus       544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid  623 (895)
T KOG2076|consen  544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID  623 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence            21111    0000                                                 0000           00 


Q ss_pred             ---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCC--C-
Q 006437          393 ---VVYNALLSYFCKAGFPNQAVKLYNTMLDKGF--TPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMN-NPA--V-  460 (645)
Q Consensus       393 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--~-  460 (645)
                         ..+.-++..+++.+++++|+.+...+.....  .++.   ..-...+.+++..+++..|...++.++.. +..  + 
T Consensus       624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~  703 (895)
T KOG2076|consen  624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY  703 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence               1234456677788888888888877766431  1111   11233455666788888888888888766 111  1 


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML-  539 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-  539 (645)
                      -...|+...+.+.+.++-..-.+.+..+.......+..............+.+..|+..+-+...  ..|+....+..+ 
T Consensus       704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lg  781 (895)
T KOG2076|consen  704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLG  781 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence            23445555555555555444444444444332111122222333344567888999998877766  467654444333 


Q ss_pred             HHHHh---c-------CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          540 LSFCK---E-------RNIKMVKRLLQDVIDARIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       540 ~~~~~---~-------g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      -++..   +       -..-.+..++.+..+.... -....+-.++++|...|-..-|...+++.+  ++.|-..
T Consensus       782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~~  854 (895)
T KOG2076|consen  782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKDV  854 (895)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCcccc
Confidence            22211   1       1233455555555543221 135667789999999999999999999998  6665444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=6.8e-14  Score=129.44  Aligned_cols=452  Identities=13%  Similarity=0.112  Sum_probs=300.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH-HHHHHHHhcCCHhHHHHHHhhcC----CCCh----hhHHHH
Q 006437          121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN-IVMDVLFKIGRVDLGIKVLKETQ----LPNF----LSFNIA  191 (645)
Q Consensus       121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l  191 (645)
                      ....|.+-|.......+|+..|+-+.+...-|+.-... .+...+.+.+.+.+|++.+....    .-+.    ...+.+
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni  282 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence            34455667778889999999999999888777765432 35567888899999999887543    2222    234444


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC------------HHhHH
Q 006437          192 LCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS------------VNAWT  259 (645)
Q Consensus       192 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~  259 (645)
                      .-.+.+.|+++.|+..|+...+.  .|+..+-..|+-++...|+.++..+.|..|+.....||            ....+
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            45678999999999999998776  48877666666677778999999999999986533322            22222


Q ss_pred             HHH-----HHHHhcCC--HHHHHHHHHHHHHcCCCCChhc-hH------------H--------HHHHHHhcCChhHHHH
Q 006437          260 VLI-----DGFRRLRR--LDMAGYLWEKMVQNGCSPNVVT-YT------------S--------LIKGFMEAKMFSIAFS  311 (645)
Q Consensus       260 ~li-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~-~~------------~--------li~~~~~~~~~~~a~~  311 (645)
                      ..|     .-+-+.++  .++++-.-.++..--+.|+-.. +.            .        -.-.|.++|+++.|.+
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence            222     11222111  1222211122221112222111 00            0        0123677888999988


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCC
Q 006437          312 FLDMLESEGHAPDLVFHNVLIDCL-SK-MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVE  389 (645)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~ll~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  389 (645)
                      +++-+.++.-+.-...-+.+-..+ .+ ..++..|.+.-+...... .-+......-.......|+++.|.+.+++. ..
T Consensus       441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea-l~  518 (840)
T KOG2003|consen  441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA-LN  518 (840)
T ss_pred             HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH-Hc
Confidence            888887764332222233222222 22 335666666666554321 111111111122234567888888887442 22


Q ss_pred             CCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 006437          390 ADLVVYNALL---SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT  466 (645)
Q Consensus       390 ~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  466 (645)
                      .|...-..+.   -.+-..|+.++|++.|-++..- +..+......+...|....+...|++++.+....-+. |+.+.+
T Consensus       519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ils  596 (840)
T KOG2003|consen  519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILS  596 (840)
T ss_pred             CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHH
Confidence            2322222222   2356789999999999876543 2346667777888888889999999999887665444 888999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-Hhc
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF-CKE  545 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~  545 (645)
                      -|.+.|-+.|+-..|.+.+-+-- +-+|.|..+..-|..-|....-+++|+.+|++..-  ++|+..-|..++..| .+.
T Consensus       597 kl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs  673 (840)
T KOG2003|consen  597 KLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS  673 (840)
T ss_pred             HHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence            99999999999999988766543 23677888988899999999999999999999876  899999999998877 678


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437          546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHS  582 (645)
Q Consensus       546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  582 (645)
                      |++++|.++++...+. +.-|......|++.+...|-
T Consensus       674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            9999999999998775 44489999999998887774

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.69  E-value=3e-11  Score=122.10  Aligned_cols=461  Identities=13%  Similarity=0.095  Sum_probs=296.5

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV  176 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  176 (645)
                      .|++++|.+++.+..+.. +-+...|..|...|-..|+.+++...+-...-.. +.|...|..+.....+.|.++.|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence            599999999999999986 5688899999999999999999988776554333 55778999999999999999999999


Q ss_pred             HhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437          177 LKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM----FEILLNCFCKMGRIAEAYQLLGLMITL  249 (645)
Q Consensus       177 ~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~  249 (645)
                      |.+..   +++...+-.-...|-+.|+...|.+-|.++.+...+.|..-    --.+++.+...++.+.|.+.++.....
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            99876   34444444556678889999999999999988753333333    334566677788889999999888763


Q ss_pred             -CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCChhchHHHHHHHH
Q 006437          250 -GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ---------------------------NGCSPNVVTYTSLIKGFM  301 (645)
Q Consensus       250 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------------~~~~~~~~~~~~li~~~~  301 (645)
                       +-.-+...++.++..+.+...++.|......+..                           .++.++... --+.-++.
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~  388 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV  388 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence             2234566788899999999999999888887766                           122334333 12233444


Q ss_pred             hcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccH
Q 006437          302 EAKMFSIAFSFLDMLESEG--HAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLL  379 (645)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  379 (645)
                      ..+..+....+..-+.+..  +.-+...|.-+..++...|++..|+.+|..+......-+..+|-.+..+|...|..+.|
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A  468 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA  468 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence            4455555555555555554  33345567777788888888888888888888766555677788888888888888888


Q ss_pred             HHHHhc-CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437          380 PKLVCG-LEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLD--------KGFTPDNYSFVGLLRGLCGARKIDEAINV  449 (645)
Q Consensus       380 ~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  449 (645)
                      .+.++. +...|+ ...--.|...+-+.|+.++|.+.+..+..        .+..|+..........+...|+.++-..+
T Consensus       469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t  548 (895)
T KOG2076|consen  469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT  548 (895)
T ss_pred             HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            877733 334443 33444556667778888888888877432        23556666666666666777777665554


Q ss_pred             HHHHHHcC-----C-----------------CCcHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCC--hhh
Q 006437          450 YQGIVMNN-----P-----------------AVNAHVHTAIVDRLIEAGRCHKAIQLFR------RAIVEKYPLD--VVS  499 (645)
Q Consensus       450 ~~~~~~~~-----~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~--~~~  499 (645)
                      ...|+...     +                 .........+..+-.+.++......-..      .....++.-+  -..
T Consensus       549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel  628 (895)
T KOG2076|consen  549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL  628 (895)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence            44433211     0                 1111122223333333333222111111      1111111111  123


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH---H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY---T-YRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~---~-~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +.-++.++++.+++++|+.+...+.+....- +..   . -...+.++...+++..|...++.|..
T Consensus       629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~  694 (895)
T KOG2076|consen  629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT  694 (895)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455566667777777777766665432211 111   2 23344455666777777777666654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.68  E-value=1.6e-13  Score=137.19  Aligned_cols=528  Identities=10%  Similarity=0.016  Sum_probs=262.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 006437           76 QRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTF  155 (645)
Q Consensus        76 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  155 (645)
                      ..+..|+..+|..+|.-|+. .|+.+.|- +|.-|.....+.+...|+.++.+....++.+.+.           .|.+.
T Consensus        18 ~~gi~PnRvtyqsLiarYc~-~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD   84 (1088)
T KOG4318|consen   18 ISGILPNRVTYQSLIARYCT-KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD   84 (1088)
T ss_pred             HhcCCCchhhHHHHHHHHcc-cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence            34555667777777777776 67666666 6776666666666666777777666666665554           46666


Q ss_pred             hHHHHHHHHHhcCCHhH---HHHHHhhcC---CCCh----hh---------------HHHHHHHHHhcCCcchHHHHHHH
Q 006437          156 ARNIVMDVLFKIGRVDL---GIKVLKETQ---LPNF----LS---------------FNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       156 ~~~~ll~~~~~~g~~~~---A~~~~~~~~---~~~~----~~---------------~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      +|..|..+|...||...   ..+.++.+.   .+..    ..               -...+.-..-.|-++.+++++..
T Consensus        85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~  164 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK  164 (1088)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777777777776433   222222111   0000    00               00011111112222222222222


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437          211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV  290 (645)
Q Consensus       211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  290 (645)
                      +...... .  ++..+++-+..  .....+++.+...+..-.|+..+|.++++.-...|+.+.|..++.+|++.|++.+.
T Consensus       165 ~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  165 VPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             CCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            2111000 0  00001111111  12223333333322211456666666666666666666666666666666666666


Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      .-|-.++.+   .++...+..+++.|.+.|+.|+..|+...+..+..+|....+..        |. +...-+.+-+..-
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~tAavrsa  307 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGFTAAVRSA  307 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhhhHHHHHH
Confidence            555555544   55566666666666666666666666655555555443221111        11 1111111111111


Q ss_pred             HhcCCcccHHHHHh---------c------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCC-CHhhHHH
Q 006437          371 CLSGRFSLLPKLVC---------G------LEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG--FTP-DNYSFVG  432 (645)
Q Consensus       371 ~~~~~~~~a~~~~~---------~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p-~~~~~~~  432 (645)
                      .-.|  ..+.+.++         .      .+......+|...+. ...+|.-+..+++-..|..--  ..+ +...|..
T Consensus       308 a~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~  384 (1088)
T KOG4318|consen  308 ACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA  384 (1088)
T ss_pred             Hhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence            1111  11111110         0      011222233333222 233566666665555553311  111 1122333


Q ss_pred             HHHHHHc----------------------CCCHHHHHHHHHHHHHc----------------CCC-------CcHHHHHH
Q 006437          433 LLRGLCG----------------------ARKIDEAINVYQGIVMN----------------NPA-------VNAHVHTA  467 (645)
Q Consensus       433 ll~~~~~----------------------~~~~~~a~~~~~~~~~~----------------~~~-------~~~~~~~~  467 (645)
                      ++.-|.+                      ..+..+..+.......+                ...       +-...-+.
T Consensus       385 ~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q  464 (1088)
T KOG4318|consen  385 LLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ  464 (1088)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence            3322221                      11111111111111000                000       01112233


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPNAYTYRVMLLSFCKE  545 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~  545 (645)
                      ++..++..-+..+++..-+.....-+   ...|..||.-+..+.+.+.|..+.++.....  +.-|..-+..+.+...+.
T Consensus       465 l~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~  541 (1088)
T KOG4318|consen  465 LHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL  541 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence            44445555555555544444333221   2568888888888888999998888876322  334666778888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhhHHHhhhcccCCcccccc
Q 006437          546 RNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPD-EMWRKLGLLSDETMTPVSLFD  622 (645)
Q Consensus       546 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~w~~~~~L~~~~~~~~~~~~  622 (645)
                      +....+..+++++.+.-..-+  ..+.-.+.+..+..|+.+...++.+-+...|+.-+ ..|+ .++--++...+.++.+
T Consensus       542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~-vhLrkdd~s~a~ea~e  620 (1088)
T KOG4318|consen  542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWM-VHLRKDDQSAAQEAPE  620 (1088)
T ss_pred             HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceE-EEeeccchhhhhhcch
Confidence            888888888888876322212  45556667777888888888888888888776552 2233 1111277778888888


Q ss_pred             ccccccccCCCcchhhcc
Q 006437          623 GFVPCERRAGNANHLLLN  640 (645)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~  640 (645)
                      ......+..|-.+.+++.
T Consensus       621 ~~~qkyk~~P~~~e~lcr  638 (1088)
T KOG4318|consen  621 PEEQKYKPYPKDLEGLCR  638 (1088)
T ss_pred             HHHHHhcCChHHHHHHHH
Confidence            877777777777666553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=3.2e-11  Score=112.81  Aligned_cols=434  Identities=10%  Similarity=0.068  Sum_probs=239.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCCh-hhHHHHHHH
Q 006437          118 KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNF-LSFNIALCN  194 (645)
Q Consensus       118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~ll~~  194 (645)
                      +...+....+.=...++++.|..+|+...... ..+...|-..+.+=.++..+..|..++++..  -|-+ ..|--.+..
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33334333344444555555555665555443 3344445445555555555555555555433  1111 122222222


Q ss_pred             HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437          195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA  274 (645)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  274 (645)
                      --..|++..|.++|+.-.+-  .|+...|.+.|+.-.+.++++.|..+++..+-  +.|++..|--....=.++|....|
T Consensus       151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence            22344555555555444432  44555555555554455555555555544443  234444444444444444444444


Q ss_pred             HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL  354 (645)
Q Consensus       275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  354 (645)
                      ..+|+...+.  -.|...                               +...+.+...--.+...++.|.-+|+-.++.
T Consensus       227 R~VyerAie~--~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~  273 (677)
T KOG1915|consen  227 RSVYERAIEF--LGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH  273 (677)
T ss_pred             HHHHHHHHHH--hhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444321  001111                               1112222222222334445555555544442


Q ss_pred             CCCCC--HhhHHHHHHHHHhcCCcccHHHHH---hc------C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437          355 KLVPD--SYTFCSLLSTVCLSGRFSLLPKLV---CG------L-EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG  422 (645)
Q Consensus       355 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~---~~------~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  422 (645)
                       ++.+  ...|..+...--+-|+.....+.+   +.      . ...-|..+|--.+..--..|+.+...++|+..+.. 
T Consensus       274 -~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-  351 (677)
T KOG1915|consen  274 -IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-  351 (677)
T ss_pred             -cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence             1111  223333333333344443333332   00      0 12235556666666667778888888888888765 


Q ss_pred             CCCCHh-------hHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 006437          423 FTPDNY-------SFVGLLRGL---CGARKIDEAINVYQGIVMNNPAVNAHVHTAI----VDRLIEAGRCHKAIQLFRRA  488 (645)
Q Consensus       423 ~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~  488 (645)
                      ++|-..       .|..+--+|   ....+++.+.++++..++.- +....++.-+    .....++.++..|.+++..+
T Consensus       352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI-PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            455321       222222222   24678888888888877742 2244444443    33334678888888888877


Q ss_pred             HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 006437          489 IVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR-IELD  566 (645)
Q Consensus       489 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~  566 (645)
                      +  |..|-..+|...|..-.+.++++....+|++.++  ..| |..+|......-...|+.+.|..+|+.+++.. .+..
T Consensus       431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp  506 (677)
T KOG1915|consen  431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP  506 (677)
T ss_pred             h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence            6  4468888888888888888899999999999888  456 67788877777788899999999998887542 3334


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          567 YHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       567 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ...|...++.-...|.++.|..+++++++.
T Consensus       507 ellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  507 ELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            667788888888889999999999888765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=2.8e-12  Score=118.95  Aligned_cols=277  Identities=13%  Similarity=0.061  Sum_probs=196.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhchHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 006437          264 GFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS--LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY  341 (645)
Q Consensus       264 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  341 (645)
                      -+.+.|+++.|.++++-..+..-+.-...-+.  ++..+...+++..|.+.-+...... .-+......-.+.....|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            46789999999999988876432221222222  2222223456777777776665431 11222222222334457899


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006437          342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE--VEADLVVYNALLSYFCKAGFPNQAVKLYNTML  419 (645)
Q Consensus       342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  419 (645)
                      ++|.+.|++.....-.-....|+ +.-.+-..|++++|.+.|-.+.  ...+....-.+...|-...++.+|++++.+..
T Consensus       507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~  585 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN  585 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence            99999999888653222222222 2234567889999999884332  23456666778888889999999999998766


Q ss_pred             HCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 006437          420 DKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVS  499 (645)
Q Consensus       420 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  499 (645)
                      .. ++.|+...+.|...|-+.|+-..|.+.+-.--+- +..+..+...|...|....-++++...|++..-.  .|+..-
T Consensus       586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~k  661 (840)
T KOG2003|consen  586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSK  661 (840)
T ss_pred             cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHH
Confidence            54 5667888999999999999999999887665443 3448888889999999999999999999987654  699999


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437          500 YTVAIRGLL-EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN  547 (645)
Q Consensus       500 ~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  547 (645)
                      |..|+..|. +.|++.+|+.+|+..... ++-|...+..|++.|...|.
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            999987665 689999999999998763 55588899999998877763

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=7.9e-11  Score=110.04  Aligned_cols=364  Identities=12%  Similarity=0.101  Sum_probs=259.8

Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhch--H
Q 006437          217 YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTY--T  294 (645)
Q Consensus       217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~  294 (645)
                      ..|...+-.....+-+.|....|+..|......    -+..|.+-+....-..+.+.+..+..     |.+.|....  -
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~  231 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF  231 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence            345444444445556678888888888777643    12344444433333333333322221     222221111  1


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHh
Q 006437          295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL--VPDSYTFCSLLSTVCL  372 (645)
Q Consensus       295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~  372 (645)
                      -+..++....+.+++..-.......|+.-....-+....+.-...++++|+.+|+++.+...  --|..+|..++-.-..
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence            23445666667888888888888888765555555555566677899999999999988632  1255777777655444


Q ss_pred             cCCcc-cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006437          373 SGRFS-LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQ  451 (645)
Q Consensus       373 ~~~~~-~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  451 (645)
                      ..++. .|..++.--..  .+.|..++.+.|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++
T Consensus       312 ~skLs~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             hHHHHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            33332 34444432222  34466677788888999999999999998864 2245667888888999999999999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437          452 GIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN  531 (645)
Q Consensus       452 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~  531 (645)
                      ..++.++. |-..|-.|..+|.-.+.+.-|+-.|+++.+.. |.|...|.+|..+|.+.++.++|++.|+.....| ..+
T Consensus       389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte  465 (559)
T KOG1155|consen  389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE  465 (559)
T ss_pred             HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence            99998877 88899999999999999999999999998875 5689999999999999999999999999999876 457


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       532 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ...+..|.+.|-+.++.++|.+.+++.++.    |...+  .....-|...+.+.+++++|.........
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            789999999999999999999999988752    22212  23334466778899999999887777763

>TIGR00540 hemY_coli hemY protein

Probab=99.58  E-value=8.8e-12  Score=125.06  Aligned_cols=286  Identities=13%  Similarity=0.041  Sum_probs=176.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCh-hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHH
Q 006437          267 RLRRLDMAGYLWEKMVQNGCSPNV-VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLV--FHNVLIDCLSKMGSYDD  343 (645)
Q Consensus       267 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~  343 (645)
                      ..|+++.|.+.+.+..+.  .|+. ..+-....++...|+++.|.+.+.+..+..  |+..  ........+...|+++.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence            456666666666555443  2332 222333445555566666666666655432  2321  22223555566666666


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437          344 ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF  423 (645)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  423 (645)
                      |...++.+.+..  |                               .+......+...+.+.|++++|.+++..+.+.++
T Consensus       172 Al~~l~~l~~~~--P-------------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       172 ARHGVDKLLEMA--P-------------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHHHHHhC--C-------------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            666666666542  1                               1334455556666667777777777777766653


Q ss_pred             CCCHhhHH-HHHHHH---HcCCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437          424 TPDNYSFV-GLLRGL---CGARKIDEAINVYQGIVMNNPA---VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD  496 (645)
Q Consensus       424 ~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  496 (645)
                      .+. ..+. .-..++   ...+..+.+.+.+..+....+.   .+...+..++..+...|+.++|.+++++..+..  ||
T Consensus       219 ~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd  295 (409)
T TIGR00540       219 FDD-EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD  295 (409)
T ss_pred             CCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence            322 2221 111111   2222222233344444444332   377788888889999999999999999988764  33


Q ss_pred             hhh---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437          497 VVS---YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NA--YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS  570 (645)
Q Consensus       497 ~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  570 (645)
                      ...   ...........++.+.+.+.+++..+  ..| |+  ....++.+.|.+.|++++|.+.|+........|+...+
T Consensus       296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             cccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence            321   11222223345778888888888876  356 44  56778899999999999999999965555566788888


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHH
Q 006437          571 IRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       571 ~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..+...+.+.|+.++|.+++++..
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            899999999999999999998864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.58  E-value=1.8e-09  Score=105.14  Aligned_cols=510  Identities=13%  Similarity=0.162  Sum_probs=320.4

Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006437           84 QSFDHMISVVTRLTGRFETVRGIVGELARV-GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMD  162 (645)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  162 (645)
                      ..|-.-+..+.+ +++...-...|.+.... .+.-....+...++.....+-++-+..+|+..++.    ++..-+-.+.
T Consensus       103 RIwl~Ylq~l~~-Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie  177 (835)
T KOG2047|consen  103 RIWLDYLQFLIK-QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE  177 (835)
T ss_pred             HHHHHHHHHHHh-cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            345555566666 67777777777765543 22334456777788888888888999999988854    4445777888


Q ss_pred             HHHhcCCHhHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCC---cchHHHHHHHHHHCCCCCCH--hhHHHHH
Q 006437          163 VLFKIGRVDLGIKVLKETQLP----------NFLSFNIALCNLCKLND---VSNVKDVIGMMVRKGFYPNV--RMFEILL  227 (645)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~~--~~~~~ll  227 (645)
                      .+++.+++++|.+.+......          +-..|..+-....++-+   --....+++.+..+  -+|.  ..|.+|.
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA  255 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA  255 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence            899999999999988876532          33346655555554433   23344455555443  3454  3688899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC
Q 006437          228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR----------------------RLDMAGYLWEKMVQNG  285 (645)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~m~~~~  285 (645)
                      +-|.+.|.+++|..+|++....  ..++.-|+.+.++|+.-.                      +++-...-|+.+...+
T Consensus       256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            9999999999999999988764  345556666666664321                      1222333344333321


Q ss_pred             -----------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHH
Q 006437          286 -----------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD------LVFHNVLIDCLSKMGSYDDALDVY  348 (645)
Q Consensus       286 -----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~  348 (645)
                                 -+-++..|..-+.  +..|+..+....+.+.... +.|.      ...|..+.+.|-..|+++.|..+|
T Consensus       334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif  410 (835)
T KOG2047|consen  334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF  410 (835)
T ss_pred             chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence                       1112333333222  2345666667777777654 2222      235777888899999999999999


Q ss_pred             HHHHHCCCCCC---HhhHHHHHHHHHhcCCcccHHHHHhcCCCCC--------------------CHHHHHHHHHHHHHc
Q 006437          349 DGLLELKLVPD---SYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA--------------------DLVVYNALLSYFCKA  405 (645)
Q Consensus       349 ~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~li~~~~~~  405 (645)
                      ++..+...+.-   ..+|.....+-.+..+++.|.++++..-..|                    +...|+..++.--..
T Consensus       411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~  490 (835)
T KOG2047|consen  411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL  490 (835)
T ss_pred             HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence            99887554332   3455555566667777888888874332211                    344677777777778


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHh---cCCHHHH
Q 006437          406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA-HVHTAIVDRLIE---AGRCHKA  481 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a  481 (645)
                      |-++....+|+.+.+..+...... .....-+-...-++++.++|++-+....-|+. .+|+..+.-+.+   ...+++|
T Consensus       491 gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra  569 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA  569 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            889999999999998765322222 11222234556788999999988777555553 467776665554   2468999


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          482 IQLFRRAIVEKYPLDVVSYTVAIR--GLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      ..+|++.++ ++||...-+-.|+-  .--+.|-...|++++++.... +.+.  ...|+..|.--...=.+...+.++++
T Consensus       570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek  647 (835)
T KOG2047|consen  570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK  647 (835)
T ss_pred             HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence            999999998 66665332222222  222568888899999987643 4442  34677777655555455666777777


Q ss_pred             HHHCCCCcCHHH---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh---hhHHHhhh
Q 006437          558 VIDARIELDYHT---SIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM---WRKLGLLS  611 (645)
Q Consensus       558 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---w~~~~~L~  611 (645)
                      .++.  -||...   .....+.-.+.|..+.|..++.-..+- ..|...   |++.....
T Consensus       648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FE  704 (835)
T KOG2047|consen  648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFE  704 (835)
T ss_pred             HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHH
Confidence            7764  233332   233444556778888888877766532 334332   66666555

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.58  E-value=1.2e-11  Score=123.27  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      ++.....+...+...|+.++|.+++++..+.  .|+...  .++.+....++.+++.+..+...+..++ |...+..+..
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgr  336 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQ  336 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence            3344444555555555555555555555442  223211  1122222335555555555555544443 4444445555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      .+.+.+++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|.+++++.
T Consensus       337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555555555555555555443  244444444555555555555555555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.57  E-value=2.3e-11  Score=121.25  Aligned_cols=194  Identities=10%  Similarity=0.085  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH  465 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  465 (645)
                      .....+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+.+.-+ .++...
T Consensus       188 ~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~-~~~~~~  266 (398)
T PRK10747        188 EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR-HQVALQ  266 (398)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh-CCHHHH
Confidence            33444445555555555555555555554432211       1222223333333444555555555433322 356666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHh
Q 006437          466 TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCK  544 (645)
Q Consensus       466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~  544 (645)
                      ..+...+...|+.++|.+++++..+.  +|+....  ++.+....++.+++++..+...+  ..| |+..+..+.+.|.+
T Consensus       267 ~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~  340 (398)
T PRK10747        267 VAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMK  340 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence            77777777777777777777777663  3444221  23333445777777777777776  345 45566677777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          545 ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .|++++|.+.|+.+.+.  .|+...+..+..++.+.|+.++|.+.+++-..
T Consensus       341 ~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        341 HGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            77888888887777763  46677777777777778888887777776643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=1.7e-14  Score=137.44  Aligned_cols=261  Identities=17%  Similarity=0.207  Sum_probs=102.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437          295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS  373 (645)
Q Consensus       295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  373 (645)
                      .+...+.+.|++++|+++++........|+ ...|..+...+...++.+.|.+.++++...+..                
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----------------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            345556666777777777754433321233 333333444555566777777777777654211                


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437          374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI  453 (645)
Q Consensus       374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  453 (645)
                                       ++..+..++.. ...+++++|.+++....+..  ++...+..++..+...++++++..+++.+
T Consensus        77 -----------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~  136 (280)
T PF13429_consen   77 -----------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKL  136 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred             -----------------ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence                             22233344444 56777777777776655442  45555666777777788888888888876


Q ss_pred             HHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006437          454 VMNN-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA  532 (645)
Q Consensus       454 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~  532 (645)
                      .... ...+...|..+...+.+.|+.++|.+.+++.++.. |.|....+.++..+...|+.+++.++++...+.. +.|+
T Consensus       137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~  214 (280)
T PF13429_consen  137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP  214 (280)
T ss_dssp             HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred             HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence            6542 34567777788888888888888888888888764 3357778888888888888888888887776642 4466


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..+..+..+|...|+.++|..++++..+.++. |+.....+.+++...|+.++|.++.++..
T Consensus       215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            67778888888888888888888888876554 78888888888888888888888877654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.56  E-value=2.9e-11  Score=121.48  Aligned_cols=513  Identities=13%  Similarity=0.050  Sum_probs=303.6

Q ss_pred             CCCCChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006437           45 PIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL  124 (645)
Q Consensus        45 ~~~~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  124 (645)
                      |...|...+...|...|+.+-|- +|..+..+. ..-....|+.++.+..+ +++.+.+.           .|.++||..
T Consensus        23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~-And~Enpk-----------ep~aDtyt~   88 (1088)
T KOG4318|consen   23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKE-ANDAENPK-----------EPLADTYTN   88 (1088)
T ss_pred             CchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccc-cccccCCC-----------CCchhHHHH
Confidence            33456666667788888888776 887775542 23467788888888888 67766654           689999999


Q ss_pred             HHHHHHhcCChHH---HHHHHHHHh----hCCCCCC--------------HHhHHHHHHHHHhcCCHhHHHHHHhhcCCC
Q 006437          125 FLRIYWRGEMYGM---VLEAFDEMG----RFGFTPN--------------TFARNIVMDVLFKIGRVDLGIKVLKETQLP  183 (645)
Q Consensus       125 li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  183 (645)
                      +..+|...||+..   ..+.++.+.    ..|+...              ...-...+......|-++.+++++..++..
T Consensus        89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs  168 (1088)
T KOG4318|consen   89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS  168 (1088)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            9999999998754   222222221    2222110              011123444555667778888887776621


Q ss_pred             Ch-hhHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 006437          184 NF-LSFNIALCNLCKLNDVSNVKDVIGMMVRKGF-YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL  261 (645)
Q Consensus       184 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (645)
                      .. .++...++-+....  ....++.... +.+. .|++.+|..+++.....|+++.|..++.+|++.|++.+..-|-.|
T Consensus       169 a~~~p~~vfLrqnv~~n--tpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL  245 (1088)
T KOG4318|consen  169 AWNAPFQVFLRQNVVDN--TPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL  245 (1088)
T ss_pred             cccchHHHHHHHhccCC--chHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence            11 11111243333222  2233333332 2222 589999999999999999999999999999999999999888887


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--
Q 006437          262 IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMG--  339 (645)
Q Consensus       262 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--  339 (645)
                      +-+   .++...++.++.-|...|+.|+..|+...+..+..+|....+.        .|. +....+.+-...-+-.|  
T Consensus       246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~s-q~~hg~tAavrsaa~rg~~  313 (1088)
T KOG4318|consen  246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGS-QLAHGFTAAVRSAACRGLL  313 (1088)
T ss_pred             hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------ccc-chhhhhhHHHHHHHhcccH
Confidence            766   8889999999999999999999999999988888866532221        121 22222222222222223  


Q ss_pred             ---CHHH-----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC-----CCC-CHHHHHHHHHHHHHc
Q 006437          340 ---SYDD-----ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE-----VEA-DLVVYNALLSYFCKA  405 (645)
Q Consensus       340 ---~~~~-----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~-~~~~~~~li~~~~~~  405 (645)
                         +.+.     ....+.+..-.|+.....+|.......- .|+-++..++...+.     ..+ ++..|..++.-|.+.
T Consensus       314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr  392 (1088)
T KOG4318|consen  314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR  392 (1088)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence               1111     1111111112233333333333322222 455554444442211     111 222333333322211


Q ss_pred             ----------------------CChHHHHHHHHHHHHC----------------CCCC-------CHhhHHHHHHHHHcC
Q 006437          406 ----------------------GFPNQAVKLYNTMLDK----------------GFTP-------DNYSFVGLLRGLCGA  440 (645)
Q Consensus       406 ----------------------g~~~~a~~~~~~m~~~----------------~~~p-------~~~~~~~ll~~~~~~  440 (645)
                                            ....+..++.......                ...|       -...-+.++..|++.
T Consensus       393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se  472 (1088)
T KOG4318|consen  393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE  472 (1088)
T ss_pred             HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence                                  1111111111111100                0000       111234455556665


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437          441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRTEEAYI  518 (645)
Q Consensus       441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~  518 (645)
                      -+..++...-+.....-   -...|..|++.++...+.+.|..+.++.....  +-.|..-+..+.+.+.+.+....+..
T Consensus       473 ~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t  549 (1088)
T KOG4318|consen  473 YNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST  549 (1088)
T ss_pred             HHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence            56666654444333222   22678899999999999999999999876542  22355668889999999999999999


Q ss_pred             HHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          519 LYSQMKHIA-VPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       519 ~~~~m~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +++++.+.- ..|+ ..++..++...+..|+.+...++.+-+...|+..+    .-++....+.++...|+++.+...
T Consensus       550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~  623 (1088)
T KOG4318|consen  550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEE  623 (1088)
T ss_pred             HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence            999998632 2332 45677778888899999999999988887776532    223333445555555555555443

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=3.3e-11  Score=120.89  Aligned_cols=122  Identities=11%  Similarity=0.014  Sum_probs=68.4

Q ss_pred             hcCCcchHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437          197 KLNDVSNVKDVIGMMVRKGFYPNV-RMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAG  275 (645)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  275 (645)
                      ..|+++.|.+.+....+.  .|+. ..+-....++...|+.+.|.+.+....+....+...........+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            356666666666555443  2332 2233344555566666666666666654422222223333455566666666666


Q ss_pred             HHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437          276 YLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH  321 (645)
Q Consensus       276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  321 (645)
                      +.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+.
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            6666666553 22445556666666666666666666666666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=1.2e-10  Score=107.30  Aligned_cols=286  Identities=12%  Similarity=0.086  Sum_probs=170.5

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437          198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL  277 (645)
Q Consensus       198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  277 (645)
                      .|++..|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+....++...+-+..+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466666666666655544222 2334445555556666666666666666553345555566666666666666666666


Q ss_pred             HHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          278 WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL-------VFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      ++++.+.+ +..........++|.+.|++.....++..+.+.|.-.+.       .+|+.++.-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            66666543 234455566666666666666666666666666554332       2344444433333333333333333


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 006437          351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF  430 (645)
Q Consensus       351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  430 (645)
                      ...                                 ..+.++..-.+++.-+.+.|+.++|.++..+..+++..|+   .
T Consensus       255 ~pr---------------------------------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L  298 (400)
T COG3071         255 QPR---------------------------------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L  298 (400)
T ss_pred             ccH---------------------------------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H
Confidence            322                                 1233445555666667777888888888777777765555   1


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437          431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG  510 (645)
Q Consensus       431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  510 (645)
                      . ..-.+.+.++...-.+..+...+..+. ++..+.+|...|.+.+.+.+|.+.|+...+.  .|+..+|+.+..++.+.
T Consensus       299 ~-~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~  374 (400)
T COG3071         299 C-RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQL  374 (400)
T ss_pred             H-HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHc
Confidence            1 122345566666666666665555443 4466777777777777777777777766654  36777777777777777


Q ss_pred             CCHHHHHHHHHHHhh
Q 006437          511 GRTEEAYILYSQMKH  525 (645)
Q Consensus       511 g~~~~A~~~~~~m~~  525 (645)
                      |+.++|.+..++...
T Consensus       375 g~~~~A~~~r~e~L~  389 (400)
T COG3071         375 GEPEEAEQVRREALL  389 (400)
T ss_pred             CChHHHHHHHHHHHH
Confidence            777777777776553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2e-09  Score=100.86  Aligned_cols=385  Identities=15%  Similarity=0.119  Sum_probs=262.4

Q ss_pred             CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhH--HH
Q 006437          148 FGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMF--EI  225 (645)
Q Consensus       148 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~  225 (645)
                      .+...|...+-.....+.+.|....|+..|......-+..|.+.+...--..+.    +........ ...|...+  --
T Consensus       158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~----e~~~~l~~~-l~~~~h~M~~~F  232 (559)
T KOG1155|consen  158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI----EILSILVVG-LPSDMHWMKKFF  232 (559)
T ss_pred             hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH----HHHHHHHhc-CcccchHHHHHH
Confidence            344566666655666677788899999988876643334444333322112222    222222221 11111111  12


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhchHHHHHHHHhc
Q 006437          226 LLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC--SPNVVTYTSLIKGFMEA  303 (645)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~  303 (645)
                      +..++-.....+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+...  --|..+|..++..--. 
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~-  311 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND-  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence            3455556667888888888888888877777666666777788999999999999987631  0156667666544322 


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437          304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV  383 (645)
Q Consensus       304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  383 (645)
                       +-  .+..+.+-...--+--..|...+.+-|+-.++.++|...|++..+.+                            
T Consensus       312 -~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----------------------------  360 (559)
T KOG1155|consen  312 -KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN----------------------------  360 (559)
T ss_pred             -hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----------------------------
Confidence             11  12222221111012234567777888888899999999999888743                            


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437          384 CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH  463 (645)
Q Consensus       384 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  463 (645)
                           +.....|+.|-.-|...++...|++-++..++-. +-|-..|-.|.++|.-.+...=|.-.|++.....|. |..
T Consensus       361 -----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsR  433 (559)
T KOG1155|consen  361 -----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSR  433 (559)
T ss_pred             -----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chH
Confidence                 2235568888888999999999999999998863 557788999999999999999999999999888777 899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CC-CCC-CHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IA-VPP-NAYTYRV  537 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p-~~~~~~~  537 (645)
                      +|.+|.++|.+.++.++|.+-|++....| ..+...+..|...|-+.++.++|...|++..+    .| +.| .......
T Consensus       434 lw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f  512 (559)
T KOG1155|consen  434 LWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF  512 (559)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            99999999999999999999999999876 22458899999999999999999999888654    23 223 1222333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          538 MLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       538 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      |..-+.+.+++++|..+......-                  .-..++|..+++++..
T Consensus       513 LA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  513 LAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHHHHHHH
Confidence            455567778888877665544332                  2234567777777654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=9.7e-11  Score=110.17  Aligned_cols=411  Identities=12%  Similarity=0.060  Sum_probs=212.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh---hhHHHHHHHHHhcC
Q 006437          124 LFLRIYWRGEMYGMVLEAFDEMGRFGFTPN-TFARNIVMDVLFKIGRVDLGIKVLKETQLPNF---LSFNIALCNLCKLN  199 (645)
Q Consensus       124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g  199 (645)
                      ....-|.++|.+++|++.|.+.+..  .|+ +..|.....+|...|+|+.+.+.--+..+-++   ..+..-.+++-+.|
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence            3445677888999999999988876  566 78888888888889998888887666553332   34555566677777


Q ss_pred             CcchHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437          200 DVSNVKDVIGMMV-RKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT-L--GTSLSVNAWTVLIDGFRRLRRLDMAG  275 (645)
Q Consensus       200 ~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~li~~~~~~~~~~~a~  275 (645)
                      ++++|+.=..-.. -.|+. +..+--.+=+.+-+     .|++-.++-.+ .  ..-|+....++....+...       
T Consensus       198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-------  264 (606)
T KOG0547|consen  198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-------  264 (606)
T ss_pred             cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-------
Confidence            7777754333221 11221 11111111111111     11111211111 1  1234443333333322110       


Q ss_pred             HHHHHHHHcCCCCChhchHHHHHHHHh--cC---ChhHHHHHHHHHHhC-CCC-----CCHh------hHHHHHHHHHhc
Q 006437          276 YLWEKMVQNGCSPNVVTYTSLIKGFME--AK---MFSIAFSFLDMLESE-GHA-----PDLV------FHNVLIDCLSKM  338 (645)
Q Consensus       276 ~~~~~m~~~~~~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~~~~~-~~~-----~~~~------~~~~ll~~~~~~  338 (645)
                           .......+...+...+..++..  .+   .+..|.+.+.+-... -..     .|..      +.......+.-.
T Consensus       265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~  339 (606)
T KOG0547|consen  265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK  339 (606)
T ss_pred             -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence                 0000000111111111111110  11   222222222221100 000     0111      111111122334


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006437          339 GSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTM  418 (645)
Q Consensus       339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  418 (645)
                      |+.-.|..-|+..++....+                                 ...|--+..+|....+.++....|++.
T Consensus       340 g~~~~a~~d~~~~I~l~~~~---------------------------------~~lyI~~a~~y~d~~~~~~~~~~F~~A  386 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAF---------------------------------NSLYIKRAAAYADENQSEKMWKDFNKA  386 (606)
T ss_pred             CCchhhhhhHHHHHhcCccc---------------------------------chHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            56666666666666532211                                 111444445566667777777777766


Q ss_pred             HHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437          419 LDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV  498 (645)
Q Consensus       419 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  498 (645)
                      .+.+ +-++.+|..-.+...-.+++++|..=|++.++..+. +...|-.+.-+..+.+++++++..|++.+++ +|..+.
T Consensus       387 ~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E  463 (606)
T KOG0547|consen  387 EDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE  463 (606)
T ss_pred             HhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence            6643 223445555555555566677777777776666554 5555556666666677777777777776654 455566


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-------AYTY--RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT  569 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  569 (645)
                      .|+.....+...++++.|.+.|+...+  +.|+       ..++  -.++..-. .+++..|.+++.+..+.+++ ....
T Consensus       464 vy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A  539 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQA  539 (606)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHH
Confidence            777777777777777777777777665  3333       1111  11111111 26777777777777765544 4456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          570 SIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       570 ~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      |..|.....+.|+.++|+++|++..
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7777777777777777777777654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=1.3e-13  Score=131.38  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006437          400 SYFCKAGFPNQAVKLYNTMLDKG-FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRC  478 (645)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  478 (645)
                      ..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++..|. +..+...++..+...|+.
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~  196 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDY  196 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCh
Confidence            33344444444444444433221 1223334444444444555555555555555544443 444444455555555555


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      +++.++++...+.. +.|...|..+..+|...|+.++|+..+++..... +.|+.+...+..++...|+.++|.++.+++
T Consensus       197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            55555554444332 3344455555555555555555555555555421 224555555555555555555555555544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.50  E-value=4e-08  Score=96.02  Aligned_cols=519  Identities=9%  Similarity=0.051  Sum_probs=330.7

Q ss_pred             HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437           54 HSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE  133 (645)
Q Consensus        54 ~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  133 (645)
                      .+.+..+++...-...|+.+...-+.......|...+..... .+-++.+.+++++..+.    ++..-...|..++..+
T Consensus       109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~-~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d  183 (835)
T KOG2047|consen  109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVES-HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSD  183 (835)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh-CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhcc
Confidence            355667888888888998888877766667789888888888 78899999999998775    4444677788889999


Q ss_pred             ChHHHHHHHHHHhhC------CCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcC--CCCh--hhHHHHHHHHHhcCC
Q 006437          134 MYGMVLEAFDEMGRF------GFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQ--LPNF--LSFNIALCNLCKLND  200 (645)
Q Consensus       134 ~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~--~~~~--~~~~~ll~~~~~~g~  200 (645)
                      +.++|.+.+..+...      ..+.+-..|.-+.+..++.-+   --....++..+.  -+|.  ..|..|...|.+.|.
T Consensus       184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~  263 (835)
T KOG2047|consen  184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL  263 (835)
T ss_pred             chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence            999999999988632      124555677777776665432   223344555544  2343  468999999999999


Q ss_pred             cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcCC-------
Q 006437          201 VSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG----------------------RIAEAYQLLGLMITLGT-------  251 (645)
Q Consensus       201 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~-------  251 (645)
                      +++|.++|++..+.  ..+..-|..+.++|+.-.                      +++-...-|+.+.....       
T Consensus       264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl  341 (835)
T KOG2047|consen  264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL  341 (835)
T ss_pred             hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence            99999999998765  234455566666665322                      12223333444333211       


Q ss_pred             ----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437          252 ----SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN------VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH  321 (645)
Q Consensus       252 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  321 (645)
                          +.++..|..-+.  ...|+..+-...|.+.... +.|-      ...|..+.+.|-.+|+++.|..+|++..+-..
T Consensus       342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence                112333333222  2346667777777777653 2222      34577888889999999999999999877644


Q ss_pred             CCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHhhHHHHHHHHHhcCCcccHHH
Q 006437          322 APD---LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVP-----------------DSYTFCSLLSTVCLSGRFSLLPK  381 (645)
Q Consensus       322 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~~~~a~~  381 (645)
                      +--   ..+|......=.+..+++.|+++.++.....-.|                 +..+|...++..-..|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            321   2344444455556778888888887765321111                 12233334444445555555555


Q ss_pred             HHhcC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHH---cCCCHHHHHHHHHH
Q 006437          382 LVCGL---E-VEADLV-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YSFVGLLRGLC---GARKIDEAINVYQG  452 (645)
Q Consensus       382 ~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~~~~~~a~~~~~~  452 (645)
                      +++.+   . ..|-.+ -|..+   +-.+.-++++.++|++-+..--.|+. ..|+..+.-+.   ....++.|..+|++
T Consensus       499 vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq  575 (835)
T KOG2047|consen  499 VYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ  575 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            55321   1 122211 12222   33456678888888765554334443 34555444443   24578999999999


Q ss_pred             HHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437          453 IVMNNPAVNAH--VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV  528 (645)
Q Consensus       453 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  528 (645)
                      ..+ +..|...  +|-.....--+-|....|+.+++++... +++.  ...||..|.--...=-+.....+|++..+  .
T Consensus       576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~  651 (835)
T KOG2047|consen  576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--S  651 (835)
T ss_pred             HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--h
Confidence            998 4333221  2222233334568888999999997643 3432  46788888665554445667788888887  4


Q ss_pred             CCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437          529 PPNAYTYRVML---LSFCKERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       529 ~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  589 (645)
                      -|+...-...+   ..=++.|..+.|+.++..-.+ .++..+...|...-..-.++|+-+...+.
T Consensus       652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM  716 (835)
T KOG2047|consen  652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM  716 (835)
T ss_pred             CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            67766544433   344788999999999987765 46666888899988888999985544333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.7e-10  Score=102.90  Aligned_cols=226  Identities=12%  Similarity=0.110  Sum_probs=131.1

Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 006437           98 GRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVL  177 (645)
Q Consensus        98 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~  177 (645)
                      ++.+.|.++|-+|.+.. +-+.++..+|-+.|.+.|.++.|+.+++-+.+.   ||...-..+                 
T Consensus        49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~-----------------  107 (389)
T COG2956          49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL-----------------  107 (389)
T ss_pred             cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH-----------------
Confidence            44555666666555532 223444455555555556666666666555542   222111110                 


Q ss_pred             hhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---
Q 006437          178 KETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS---  254 (645)
Q Consensus       178 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---  254 (645)
                              ...-.|..-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|..+-+++.+.+.++.   
T Consensus       108 --------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e  178 (389)
T COG2956         108 --------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE  178 (389)
T ss_pred             --------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence                    112233445666666777777776666543 12344566667777777777777777776666544432   


Q ss_pred             -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006437          255 -VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLID  333 (645)
Q Consensus       255 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  333 (645)
                       ...|.-+...+....+.+.|...+.+..+.+ +..+..-..+-+.....|+++.|.+.++...+.+..--..+...+..
T Consensus       179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         179 IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence             1245555555556677777777777766543 22333444455666777777777777777777654444556666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 006437          334 CLSKMGSYDDALDVYDGLLEL  354 (645)
Q Consensus       334 ~~~~~~~~~~a~~~~~~~~~~  354 (645)
                      +|...|+.++....+..+.+.
T Consensus       258 ~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         258 CYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHc
Confidence            777777777777777776664

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.48  E-value=4.4e-10  Score=103.63  Aligned_cols=292  Identities=12%  Similarity=0.084  Sum_probs=179.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHH
Q 006437          233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF  312 (645)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  312 (645)
                      .|++..|++....-.+.+.. ....|..-.++.-..||.+.+-.++.+..+..-.++...+-+..+.....|++..|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            58999999999998877644 35566777788889999999999999998753345566677777888999999999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCH
Q 006437          313 LDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL  392 (645)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  392 (645)
                      +.++.+.+.. ..........+|.+.|++.....++..+.+.|.-.+...-.                         -..
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-------------------------le~  229 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-------------------------LEQ  229 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------------HHH
Confidence            9998887654 55677888899999999999999999999987544322110                         012


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      .+|+.+++-....+..+.-...|+....+ .+.++..-..++.-+.+.|+.++|.++.++..+++.++..    ...-.+
T Consensus       230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~  304 (400)
T COG3071         230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR  304 (400)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence            24444544444444444444455444332 2333444445555555556666666665555555544331    111122


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      .+.++.+.-.+..++..+.. +.++..+.+|...|.+.+.+.+|.+.|+...+  ..|+..+|..+..++.+.|+..+|.
T Consensus       305 l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence            33444444444444443331 23344555555555555555555555554444  3455555555555555555555555


Q ss_pred             HHHHHHH
Q 006437          553 RLLQDVI  559 (645)
Q Consensus       553 ~~~~~~~  559 (645)
                      +..++..
T Consensus       382 ~~r~e~L  388 (400)
T COG3071         382 QVRREAL  388 (400)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.7e-11  Score=120.03  Aligned_cols=281  Identities=15%  Similarity=0.117  Sum_probs=198.1

Q ss_pred             hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCcc-cHHHH
Q 006437          306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELK--LVPDSYTFCSLLSTVCLSGRFS-LLPKL  382 (645)
Q Consensus       306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~-~a~~~  382 (645)
                      ..+|...|..+... +.-+......+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+.-+-+.-... .|.++
T Consensus       335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            44555555554333 11122344445566666666666666666665521  1123345554443332211111 12222


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 006437          383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVN  461 (645)
Q Consensus       383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  461 (645)
                      ...  .+..+.+|.++-.+|.-+++.+.|++.|++..+.  .| ...+|+.+..-+.....+|.|...|+..+...++ +
T Consensus       414 i~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h  488 (638)
T KOG1126|consen  414 IDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H  488 (638)
T ss_pred             Hhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence            221  1335788999999999999999999999998875  44 6778888888888888999999999887654433 3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      -..|-.+.-.|.+.++++.|+-.|+++.+.+ |.+.+....+...+.+.|+.++|+++++++..  +.| |+..-...+.
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRAS  565 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHH
Confidence            3344457788999999999999999998876 55677778888888899999999999999887  344 6666666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      .+...+++++|.+.++++++.-++ +...|..++..|.+.|+.+.|+.-|.-|.+.
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            778889999999999999886544 6778888999999999999999888888743

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=4.6e-10  Score=100.24  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=85.1

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHH
Q 006437          198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS---VNAWTVLIDGFRRLRRLDMA  274 (645)
Q Consensus       198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a  274 (645)
                      .++.++|.++|-+|.+.. +-+..+-.+|.+.|-+.|++|.|+.+.+.+.++.--+.   ....-.|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            466777888887777642 22344556677777777888888888877765311110   11333445556666666666


Q ss_pred             HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL----VFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      +.+|..+.+.| ..-......|+..|-..++|++|++.-+++.+.+-.+..    ..|.-+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            66666666543 123344555666666666666666666655554332221    1222333333334445555555554


Q ss_pred             HHH
Q 006437          351 LLE  353 (645)
Q Consensus       351 ~~~  353 (645)
                      ..+
T Consensus       206 Alq  208 (389)
T COG2956         206 ALQ  208 (389)
T ss_pred             HHh
Confidence            444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.6e-09  Score=101.13  Aligned_cols=281  Identities=13%  Similarity=0.106  Sum_probs=181.1

Q ss_pred             ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS  368 (645)
Q Consensus       289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  368 (645)
                      +......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence            33334444445556677777777777766652 334444555555666777766666665666553 2334556666666


Q ss_pred             HHHhcCCcccHHHHHh-cCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006437          369 TVCLSGRFSLLPKLVC-GLEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEA  446 (645)
Q Consensus       369 ~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  446 (645)
                      -|...|+.++|++.|. .....|. ...|-.+...|+-.|..++|+..+...-+. ++-....+-.+.--|.+.++++.|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence            6666677777777772 2233333 346777777788888888888888776653 111222233344456777888888


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006437          447 INVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--Y----PLDVVSYTVAIRGLLEGGRTEEAYILY  520 (645)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~  520 (645)
                      .++|.+.....|. |+.+.+-+.-.....+.+.+|...|+..+..-  +    +--..+++.|..+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            8888888776665 77777777777777788888888887766220  0    012345777888888888888888888


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          521 SQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       521 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      ++.+... +-+..++.++.-.|...|+++.|.+.|.+...  +.|+-.+-..++..
T Consensus       479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence            8877632 33777888888888888888888888887765  44555444444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.4e-09  Score=103.02  Aligned_cols=501  Identities=12%  Similarity=0.081  Sum_probs=296.7

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM  161 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  161 (645)
                      +..-+..+.+-+.. ..++..|.-+-++....+.  ++..-.-+.+++.-.+.++.|..+...-.-.  ..|..+.....
T Consensus        15 s~~~~~~~~r~~l~-q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~   89 (611)
T KOG1173|consen   15 SLEKYRRLVRDALM-QHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA   89 (611)
T ss_pred             cHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence            45555555554444 4566666666666655543  3333344556666666666666655543221  34555555666


Q ss_pred             HHHHhcCCHhHHHHHHhhcC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006437          162 DVLFKIGRVDLGIKVLKETQ-LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY  240 (645)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  240 (645)
                      ..+.+..+++.|..++.... ..++..|..-=.  ...-..+.+.    ++..  +......+-.-.+.|....++++|.
T Consensus        90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar  161 (611)
T KOG1173|consen   90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEAR  161 (611)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHH
Confidence            66666677777777666431 011111100000  0000011111    0000  0111111222234455666788888


Q ss_pred             HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437          241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS----PNVVTYTSLIKGFMEAKMFSIAFSFLDML  316 (645)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~  316 (645)
                      ..|.+....    |...|..+...-. . .+-.+.+.|+.+......    -+......+.....-...-+.....-.+.
T Consensus       162 ~~Y~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~  235 (611)
T KOG1173|consen  162 DKYKEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE  235 (611)
T ss_pred             HHHHHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence            888777643    4444433322111 0 111122222222211000    01111111111110000000000000001


Q ss_pred             HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCC-CHHH
Q 006437          317 ESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEA-DLVV  394 (645)
Q Consensus       317 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~  394 (645)
                      .-.+..-+......-..-+...+++.+..++.+.+.+. .++....+..-|..+...|+......+-.++ ..-| ...+
T Consensus       236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~s  314 (611)
T KOG1173|consen  236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALS  314 (611)
T ss_pred             hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence            11123335555555666778889999999999998875 3445555555566777777755433332111 1233 4678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      |-++.-.|...|+.++|.+.|.+...-  .|. ...|.....+|+..+.-+.|...+....+.-+.... -+--+.--|.
T Consensus       315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~  391 (611)
T KOG1173|consen  315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYM  391 (611)
T ss_pred             hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHH
Confidence            888888888889999999999987653  222 456788888999999999999999887765332111 1223445678


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC----CHHHHHHHHHHHHhcCC
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI--AVPP----NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~g~  547 (645)
                      +.+++..|.+.|.++.... |.|+...+-+.-.....+.+.+|..+|+..+..  .+.+    -..+++.|..+|.+.+.
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            8999999999999998764 667888888888888889999999999987621  0111    34578999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHhhh
Q 006437          548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS  611 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~  611 (645)
                      +++|+..+++.+....+ +..++.+++-.|...|+++.|++.|.+.+  .++|+..  +..-+.
T Consensus       471 ~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~--~~~~lL  529 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNI--FISELL  529 (611)
T ss_pred             HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccH--HHHHHH
Confidence            99999999999988766 89999999999999999999999999998  7899987  444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.43  E-value=3.8e-08  Score=96.49  Aligned_cols=460  Identities=11%  Similarity=0.023  Sum_probs=249.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437           86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF  165 (645)
Q Consensus        86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  165 (645)
                      |..++..|-.  +++...+.+.+.+.+ +.+-..+|.....-.+...|+.++|........+.. ..+.++|..+.-.+-
T Consensus        11 F~~~lk~yE~--kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen   11 FRRALKCYET--KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHH--HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence            4444444444  566666666666655 334455555555445566777778877777766644 446667777776777


Q ss_pred             hcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 006437          166 KIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQ  241 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~  241 (645)
                      ...++++|++.|....   +.|...|.-+.-.-++.|+++.....-.+..+.  .| ....|..+..++.-.|+...|..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888887654   455566666666666777777777777766664  23 34456777777777788888888


Q ss_pred             HHHHHHHcC-CCcCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437          242 LLGLMITLG-TSLSVNAWTVLI------DGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD  314 (645)
Q Consensus       242 ~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  314 (645)
                      +++...+.. ..|+...|....      ....+.|.++.|.+.+..-... +.-....-..-...+.+.+++++|..++.
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            888777653 235554444332      2234566666666665544322 11111222233445666777777777777


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCH
Q 006437          315 MLESEGHAPDLVFHNVLIDCLS-KMGSYDDAL-DVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL  392 (645)
Q Consensus       315 ~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  392 (645)
                      .+...  .||...|...+..+. +-.+.-++. .+|....+.-  |...                           .|--
T Consensus       244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e---------------------------~p~R  292 (700)
T KOG1156|consen  244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHE---------------------------CPRR  292 (700)
T ss_pred             HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccc---------------------------cchh
Confidence            77765  355555554443333 222222222 4454443321  1000                           0000


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH----HcC----------C
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV----MNN----------P  458 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~  458 (645)
                      ..    ++......-.+..-.++..+.+.|+++-...   +...+-.....+-..++.-.+.    ..+          -
T Consensus       293 lp----lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  293 LP----LSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cc----HHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence            00    0000011223334455566666665543222   2222222111111111111111    110          1


Q ss_pred             CCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437          459 AVNAHVHT--AIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY  535 (645)
Q Consensus       459 ~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  535 (645)
                      .|....|.  .++..|-+.|+++.|...++..+.+  +|+ +..|-.=.+.+...|++++|..++++..+.+ .||...-
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN  442 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN  442 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence            33333333  3667777888888888888877754  455 3455555677778888888888888887754 4555444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--C---HH-HHH--HHHHHHHhcCChhHHHHHHHHH
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVIDARIEL--D---YH-TSI--RLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~-~~~--~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      ..-..-..+++..++|.++.....+.|...  +   .. .|-  .=+.+|.+.|++..|++=|..+
T Consensus       443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            444555566778888888877777665410  0   00 111  1124566676666666544443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=2.5e-09  Score=96.65  Aligned_cols=445  Identities=11%  Similarity=0.083  Sum_probs=208.1

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006437           90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL-FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIG  168 (645)
Q Consensus        90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g  168 (645)
                      +.-+.. ++++..|+.+++.-...+-. ..+.... +..++.+.|++++|...|..+.... .++...+..|...+.-.|
T Consensus        29 Ledfls-~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLS-NRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHh-cccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence            444444 58889999888876654422 2223333 3445567889999999888887644 566666666666666677


Q ss_pred             CHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          169 RVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT  248 (645)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (645)
                      .+.+|..+-.+.+. ++..-..+...-.+.|+-++...+-+.+...     ...-.+|.......-.+.+|..++..+..
T Consensus       106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78888777665432 2223333444444555555555544444321     11122233333333345666666666554


Q ss_pred             cCCCcCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437          249 LGTSLSVNAWTV-LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF  327 (645)
Q Consensus       249 ~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  327 (645)
                      .  .|.....|. +.-+|.+.+-++-+.++++.-.+. ++.+....|.......+.=.-..|++-.+.+.+.+-. .   
T Consensus       180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---  252 (557)
T KOG3785|consen  180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---  252 (557)
T ss_pred             c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence            3  222222222 223445555555555555554433 1122222332222222222222233323333222110 0   


Q ss_pred             HHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHH
Q 006437          328 HNVLIDCLSKMG-----SYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYF  402 (645)
Q Consensus       328 ~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~  402 (645)
                      |. .+.-.++.+     +-+.|++++-.+.+.  .|                                  ..--.++-.|
T Consensus       253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP----------------------------------EARlNL~iYy  295 (557)
T KOG3785|consen  253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP----------------------------------EARLNLIIYY  295 (557)
T ss_pred             ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch----------------------------------Hhhhhheeee
Confidence            11 111222211     233444444333321  11                                  1112233345


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HcCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcC
Q 006437          403 CKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGL-----CGARKIDEAINVYQGIVMNNPAVNAH-VHTAIVDRLIEAG  476 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g  476 (645)
                      .+++++++|..+.+++..  ..|-......++.+-     .....+.-|.+.|...-+++...|.. --.++..++.-..
T Consensus       296 L~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~  373 (557)
T KOG3785|consen  296 LNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF  373 (557)
T ss_pred             cccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence            566666666666555422  122222222222211     11123444555555544443322221 1233444444555


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 006437          477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM-LLSFCKERNIKMVKRLL  555 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~  555 (645)
                      ++++.+..++.+..-=...|...| .+..+++..|++.+|+++|-......++ |..+|.++ .++|.+.|..+.|..++
T Consensus       374 qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  374 QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            566666666655443212222222 3556666667777777776665443222 34444433 34446666666665543


Q ss_pred             HHHHHCCCCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          556 QDVIDARIELDYHT-SIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       556 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                         ++.+...+..+ ...+.+-|.+++.+--|-+.|+.+.
T Consensus       452 ---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  452 ---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             ---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence               33222223332 2333355666666666666666665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1.2e-10  Score=114.14  Aligned_cols=283  Identities=18%  Similarity=0.152  Sum_probs=188.7

Q ss_pred             CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhchHHHHHHHHhcCChhHHHHH
Q 006437          235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG--CSPNVVTYTSLIKGFMEAKMFSIAFSF  312 (645)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~  312 (645)
                      +..+|...|..+... ..-+..+...+..+|...+++++|+++|+.+.+..  ..-+...|.+.+..+-+.    -++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            445666666664433 22233555566667777777777777777766532  011445555555443221    11111


Q ss_pred             H-HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCC-
Q 006437          313 L-DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA-  390 (645)
Q Consensus       313 ~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-  390 (645)
                      + +.+.+. -+-...+|.++.++|.-.++.+.|++.|++..+.                                  .| 
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----------------------------------dp~  453 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----------------------------------DPR  453 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------------------------CCc
Confidence            1 111111 1224456666777777777777777777666552                                  23 


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYS---FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTA  467 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  467 (645)
                      ...+|+.+-.-+.....+|.|...|+..+.    .|...   |..+...|.+.++++.|+-.|+++++.++. +..+...
T Consensus       454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~  528 (638)
T KOG1126|consen  454 FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCH  528 (638)
T ss_pred             cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhh
Confidence            344555555566677778888888887654    34433   445666788899999999999998888877 7777778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                      +...+.+.|+.++|+++++++.... +-|+..--..+..+...++.++|+..++++++  +.| +...+..+...|.+.|
T Consensus       529 ~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  529 IGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             hhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHc
Confidence            8888899999999999999988775 33555544556667778899999999999998  667 5677888889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCc
Q 006437          547 NIKMVKRLLQDVIDARIEL  565 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~~  565 (645)
                      +.+.|+.-|.-+.+.++++
T Consensus       606 ~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  606 NTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             cchHHHHhhHHHhcCCCcc
Confidence            9999998888887765553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=1.5e-08  Score=91.82  Aligned_cols=447  Identities=12%  Similarity=0.089  Sum_probs=249.6

Q ss_pred             HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437           57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG  136 (645)
Q Consensus        57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  136 (645)
                      +....++.-|..+++.......  ......+.-|..+.-.-|++++|...+..+.... .++......+.-.+.-.|.+.
T Consensus        32 fls~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHhcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence            4456688889999888765433  1222334444434333699999999999887754 466666666666666678889


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437          137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF  216 (645)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  216 (645)
                      +|..+-...     +.++..-..|++.-.+.++-++...+-+.+.... ..--++.+..-..-.+++|++++......+ 
T Consensus       109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-  181 (557)
T KOG3785|consen  109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN-  181 (557)
T ss_pred             HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            998877654     3345555566677777788777766665554221 222344444445567899999999998763 


Q ss_pred             CCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHH
Q 006437          217 YPNVRMFEILLN-CFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS  295 (645)
Q Consensus       217 ~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  295 (645)
                       |+-...+.-+. +|.+..-++-+.++++...+. ++.+...-|.......+.=.-..|+.-..++...+-.    .| .
T Consensus       182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~  254 (557)
T KOG3785|consen  182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-P  254 (557)
T ss_pred             -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-h
Confidence             55555555444 456777788888888877765 3434555555544444433333344444555443211    12 2


Q ss_pred             HHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          296 LIKGFMEA-----KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       296 li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      .+.-+++.     ++-+.|++++-.+.+.  .|..  --.++-.|.+.++..+|..+.+++.-  ..|-......++  .
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~  326 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--F  326 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--H
Confidence            34444444     4567888888777664  2332  23355668899999999998876532  222222222222  2


Q ss_pred             HhcCC-------cccHHHHHhcCC---CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437          371 CLSGR-------FSLLPKLVCGLE---VEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG  439 (645)
Q Consensus       371 ~~~~~-------~~~a~~~~~~~~---~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  439 (645)
                      ...|+       ...|.+.|+-.|   ...| ...-.++.+.+.-..++++++..++.+..--..-|.+. ..+.++.+.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHH
Confidence            22222       233444442222   1112 22334455555555666666666666555422222222 234556666


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVH-TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAY  517 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~  517 (645)
                      .|.+.+|+++|-.+....++ +..+| +.+.++|.+++.++.|+.++-++-.   +.+..+. ..+..-|.+.+.+--|-
T Consensus       406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa  481 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA  481 (557)
T ss_pred             hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666555433333 33334 3355666666666666665543321   1122222 22334455556666666


Q ss_pred             HHHHHHhhCCCCCCHHHH
Q 006437          518 ILYSQMKHIAVPPNAYTY  535 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~  535 (645)
                      +.|+.+..  ..|++.-|
T Consensus       482 KAFd~lE~--lDP~pEnW  497 (557)
T KOG3785|consen  482 KAFDELEI--LDPTPENW  497 (557)
T ss_pred             HhhhHHHc--cCCCcccc
Confidence            66666555  34555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=5.3e-09  Score=98.74  Aligned_cols=219  Identities=15%  Similarity=0.129  Sum_probs=99.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          267 RLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALD  346 (645)
Q Consensus       267 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  346 (645)
                      -.|+.-.|..-|+..++.... +...|.-+...|....+.++.+..|+...+.+.. +..+|..-.....-.+++++|..
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence            345555555555555543211 1111444445555555555555555555544322 33344444444444445555555


Q ss_pred             HHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006437          347 VYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD  426 (645)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  426 (645)
                      -|++.+..  .|+                               +...|-.+--+..+.+++++++..|++.+++ ++..
T Consensus       416 DF~Kai~L--~pe-------------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~  461 (606)
T KOG0547|consen  416 DFQKAISL--DPE-------------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNC  461 (606)
T ss_pred             HHHHHhhc--Chh-------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            55554432  111                               2223333333444455555666666555554 3334


Q ss_pred             HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 006437          427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-------NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVS  499 (645)
Q Consensus       427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  499 (645)
                      +..|+.....+...++++.|.+.|+..+...+..       .+.+..+++-.-. .+++..|..++++..+.. |.....
T Consensus       462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A  539 (606)
T KOG0547|consen  462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQA  539 (606)
T ss_pred             chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHH
Confidence            4555555555555566666666655555443221       1111112221111 144555555555544433 122334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      |..|...-.+.|+.++|+++|++.
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            444444445555555555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.32  E-value=3.2e-09  Score=98.71  Aligned_cols=200  Identities=15%  Similarity=0.119  Sum_probs=168.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence            35677788889999999999999999988763 334667778888899999999999999999987765 5667888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~  548 (645)
                      .+...|++++|.+.++++..... +.....+..+...+...|++++|...+++..+.  .| +...+..+...+...|++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence            99999999999999999987532 224556777888999999999999999999874  44 567888899999999999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ++|...+++..+.. ..++..+..++..+...|+.++|.++.+.+..
T Consensus       186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999998763 34677777888999999999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=4.1e-07  Score=84.47  Aligned_cols=272  Identities=10%  Similarity=-0.028  Sum_probs=160.7

Q ss_pred             CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 006437          251 TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV-VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHN  329 (645)
Q Consensus       251 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  329 (645)
                      ++-|+.....+...+...|+.++|...|+.....  .|+. .......-.+.+.|++++...+...+.... +.+...|-
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf  304 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF  304 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence            3445555666666666666666666666655542  1211 111112222344555555555555554431 11222222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437          330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN  409 (645)
Q Consensus       330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  409 (645)
                      .-.......++++.|+.+-++.++..                                 ..+...|-.--..+...|+++
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~---------------------------------~r~~~alilKG~lL~~~~R~~  351 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSE---------------------------------PRNHEALILKGRLLIALERHT  351 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccC---------------------------------cccchHHHhccHHHHhccchH
Confidence            22333334455555555555444321                                 112222322234566778888


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 006437          410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV-DRLI-EAGRCHKAIQLFRR  487 (645)
Q Consensus       410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~  487 (645)
                      +|.-.|+..+... +.+...|..|+.+|...|++.+|..+-+...+.-+. +..+.+.+. ..+. ...--++|.+++++
T Consensus       352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            8888888777642 345678888888888888888887776665554322 444444332 2221 22235678888877


Q ss_pred             HHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          488 AIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       488 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                      .+...  |+ ....+.+...+...|..++++.++++...  ..||....+.|.+.+...+.+++|.+.|..+.+.+++
T Consensus       430 ~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  430 SLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             hhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            76653  44 55667777778888888888888888776  6788888888888888888888888888888775544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.29  E-value=5.1e-07  Score=88.83  Aligned_cols=431  Identities=15%  Similarity=0.129  Sum_probs=266.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 006437          121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL---PNFLSFNIALCNLCK  197 (645)
Q Consensus       121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~  197 (645)
                      .|..++..| ..+++...+...+.+.+ +.+....+.....-.+...|+-++|.........   .+.+.|..+.-.+-.
T Consensus        10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            355555554 56677778888877776 3344445554444445667888888888877653   445678888877778


Q ss_pred             cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437          198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL  277 (645)
Q Consensus       198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  277 (645)
                      ..++++|++.|......+ +-|...+.-+.-.=++.++++.....-..+.+.. +.....|..+..++.-.|++..|..+
T Consensus        88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888887764 3355666666666667777777776666666542 22445677777778888888888888


Q ss_pred             HHHHHHcC-CCCChhchHHHHH------HHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 006437          278 WEKMVQNG-CSPNVVTYTSLIK------GFMEAKMFSIAFSFLDMLESEGHAPDLV-FHNVLIDCLSKMGSYDDALDVYD  349 (645)
Q Consensus       278 ~~~m~~~~-~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~  349 (645)
                      +++..+.. ..|+...|.....      ...+.|.++.|++.+..-... + .|.. .-..-...+.+.++.++|..++.
T Consensus       166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            88887653 2455555543332      345567777777766654433 1 1222 22334456677788888888888


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHh
Q 006437          350 GLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYNTMLDKGFTPDNY  428 (645)
Q Consensus       350 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~  428 (645)
                      .++..  .||..-|.                               ..+..++.+-.+..++. .+|....+.  .|...
T Consensus       244 ~Ll~r--nPdn~~Yy-------------------------------~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e  288 (700)
T KOG1156|consen  244 RLLER--NPDNLDYY-------------------------------EGLEKALGKIKDMLEALKALYAILSEK--YPRHE  288 (700)
T ss_pred             HHHhh--CchhHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccc
Confidence            88774  23333322                               22223332222233333 555555443  11111


Q ss_pred             hHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------C
Q 006437          429 SFVGL-LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI----VEK----------Y  493 (645)
Q Consensus       429 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~  493 (645)
                      .-..+ +.......-.+....++..+.+.|+.+-   +..+...|-.....+-..++.-.+.    ..|          -
T Consensus       289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence            11111 1111222334445566666777775532   3333333332222211111111111    110          1


Q ss_pred             CCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437          494 PLDVVSYT--VAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY-TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS  570 (645)
Q Consensus       494 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  570 (645)
                      +|....|.  .++..+-+.|+++.|..+++...+  -.|+.+ -|..=.+.+...|+.++|..++++..+.+.. |...-
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~IN  442 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAIN  442 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHH
Confidence            56666565  456678899999999999999987  567754 5556678889999999999999999987653 77776


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006437          571 IRLTKFIFKFHSSSSAVNQLVEMCNLGL  598 (645)
Q Consensus       571 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~  598 (645)
                      ..-+.-..++++.++|.++.....+.|.
T Consensus       443 sKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  443 SKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            6888888999999999999999988775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=3.6e-10  Score=100.85  Aligned_cols=229  Identities=13%  Similarity=0.102  Sum_probs=177.7

Q ss_pred             HHHHhcCCcccHHHHH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHcCCCHHH
Q 006437          368 STVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV-GLLRGLCGARKIDE  445 (645)
Q Consensus       368 ~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~  445 (645)
                      ++|.+.|.+.+|.+.+ ..+...|.+.+|-.+-.+|.+..++..|+.++.+-.+.  .|-.+||. .+...+...++.++
T Consensus       231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHH
Confidence            3344444444444433 22234566677778888888999999999999888775  45555553 45566677788999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      |.++|+...+..+. +.....++...|.-.++++-|+..++++++.|+ -++..|+.+.-+|.-.++++-++.-|++.+.
T Consensus       309 a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls  386 (478)
T KOG1129|consen  309 ALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS  386 (478)
T ss_pred             HHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence            99999988877654 666677778888888999999999999999984 4788899999999999999999999999886


Q ss_pred             CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          526 IAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       526 ~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .--.|+  ..+|..+.......||+..|.+-|+.....+.. ....++.|.-.-.+.|++++|..++....  .+.|+..
T Consensus       387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~--s~~P~m~  463 (478)
T KOG1129|consen  387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK--SVMPDMA  463 (478)
T ss_pred             hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh--hhCcccc
Confidence            554454  457888888888899999999999998877665 78899999999999999999999999987  3556544

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=2e-11  Score=80.89  Aligned_cols=50  Identities=38%  Similarity=0.765  Sum_probs=40.7

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437          495 LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK  544 (645)
Q Consensus       495 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  544 (645)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67788888888888888888888888888888888888888888887764

>PF13041 PPR_2: PPR repeat family

Probab=99.24  E-value=2.4e-11  Score=80.44  Aligned_cols=50  Identities=44%  Similarity=0.873  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG  439 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  439 (645)
                      ||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.2e-07  Score=87.26  Aligned_cols=117  Identities=13%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHH--HHHHHH--hcCCc
Q 006437          126 LRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNI--ALCNLC--KLNDV  201 (645)
Q Consensus       126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--ll~~~~--~~g~~  201 (645)
                      +..+...+++++|.+...++...+ +.+..++.+-+.++.+.+++++|+.+.+.-....  +++.  +=.+||  +.+..
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccH
Confidence            344555566666666666666554 4455555555556666666666665544332111  1111  223333  45666


Q ss_pred             chHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437          202 SNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLG  250 (645)
Q Consensus       202 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (645)
                      ++|+..++     |..+ |..+...-...+.+.|++++|..+|+.+.+.+
T Consensus        96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            66666655     2222 22344444555666666666666666665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=9.3e-09  Score=107.43  Aligned_cols=146  Identities=10%  Similarity=-0.111  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 006437          135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMM  211 (645)
Q Consensus       135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  211 (645)
                      +++|...+++..+.+ +.+..++..+..++...|++++|...|++..   +.+...+..+...+...|++++|+..+++.
T Consensus       320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455555555555443 3344444445455555555555555555433   222334444444555555555555555555


Q ss_pred             HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          212 VRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV  282 (645)
Q Consensus       212 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  282 (645)
                      .+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.
T Consensus       399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            444211 1112222222333445555555555554433211123334444444555555555555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=2.3e-06  Score=86.15  Aligned_cols=427  Identities=13%  Similarity=0.058  Sum_probs=266.5

Q ss_pred             HhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC---CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CH
Q 006437          145 MGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL---PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NV  220 (645)
Q Consensus       145 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~  220 (645)
                      +....+.-+...|..|.-++..+|++..+.+.|++..+   .....|+.+...+...|.-..|..+++.-....-.| |.
T Consensus       314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~  393 (799)
T KOG4162|consen  314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI  393 (799)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence            33344556788888888889999999999999998653   344578888888889999999999998776543234 34


Q ss_pred             hhHHHHHHHHHh-cCCHHHHHHHHHHHHHc--C--CCcCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHc
Q 006437          221 RMFEILLNCFCK-MGRIAEAYQLLGLMITL--G--TSLSVNAWTVLIDGFRRL-----------RRLDMAGYLWEKMVQN  284 (645)
Q Consensus       221 ~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~  284 (645)
                      ..+...-+.|.. .+..+++..+-.++.+.  +  -......|..+.-+|...           ....++...+++..+.
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            444444455544 36677776666666542  1  112334455444444321           1234566777777654


Q ss_pred             CCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhH
Q 006437          285 GCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL-KLVPDSYTF  363 (645)
Q Consensus       285 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~  363 (645)
                      + +-|.....-+.--|+..++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |.  |-...
T Consensus       474 d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~  550 (799)
T KOG4162|consen  474 D-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM  550 (799)
T ss_pred             C-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence            3 12333333344456778899999999999888766668888888888888899999999988876652 21  00000


Q ss_pred             HHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH------HcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHHH
Q 006437          364 CSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC------KAGFPNQAVKLYNTMLDK-G-FTPDNYSFVGLLR  435 (645)
Q Consensus       364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~------~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~  435 (645)
                      ..-++.-...++.+++...            ...++..+-      ..++-...++....+.-. + ..-...++..+..
T Consensus       551 ~~~~~i~~~~~~~e~~l~t------------~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDT------------CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             hhhhhhhhhcccHHHHHHH------------HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            0111111112333332222            222222211      111111122222221110 0 0111223333322


Q ss_pred             HHHcCC---CHHHHHHHHHHHHHcC--CCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437          436 GLCGAR---KIDEAINVYQGIVMNN--PAVN------AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI  504 (645)
Q Consensus       436 ~~~~~~---~~~~a~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  504 (645)
                      -....+   ..+..      +....  +.|+      ...|......+.+.+..++|..-+.+..... +-....|....
T Consensus       619 l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G  691 (799)
T KOG4162|consen  619 LVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRG  691 (799)
T ss_pred             HHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhh
Confidence            221110   11111      11111  1222      2345567778888999999988887776553 44667777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKR--LLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                      ..+...|..++|.+.|.....  +.|+ ......+...+...|+...|..  ++..+.+.++. +...|..|+..+.+.|
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~G  768 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLG  768 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcc
Confidence            888889999999999999988  6774 6688899999999998888887  99999998766 8999999999999999


Q ss_pred             ChhHHHHHHHHHHHC
Q 006437          582 SSSSAVNQLVEMCNL  596 (645)
Q Consensus       582 ~~~~A~~~~~~m~~~  596 (645)
                      +.++|.+.|....+.
T Consensus       769 d~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  769 DSKQAAECFQAALQL  783 (799)
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999999998754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=4e-07  Score=91.33  Aligned_cols=427  Identities=17%  Similarity=0.059  Sum_probs=270.4

Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--C--CC-hh
Q 006437          112 RVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--L--PN-FL  186 (645)
Q Consensus       112 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~--~~-~~  186 (645)
                      ......++..|..+.-+..+.|+++.+.+.|++....- -.....|+.+-..|..+|.-..|..+++...  .  |+ ..
T Consensus       316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            33445678889888889999999999999999987543 3456788888889999999999999998754  2  32 23


Q ss_pred             hHHHHHHHHH-hcCCcchHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcC
Q 006437          187 SFNIALCNLC-KLNDVSNVKDVIGMMVRK--GF--YPNVRMFEILLNCFCKM-----------GRIAEAYQLLGLMITLG  250 (645)
Q Consensus       187 ~~~~ll~~~~-~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~  250 (645)
                      .+-..-..|. +.+..++++++-.+....  +.  ......|..+.-+|...           ....++.+.+++..+.+
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            3333333343 347778888777766551  11  12334555555555432           13456778888887764


Q ss_pred             C-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhH
Q 006437          251 T-SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE-GHAPDLVFH  328 (645)
Q Consensus       251 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~  328 (645)
                      . .|++..|  +.--|+..++++.|.+...+..+.+-.-+...|..+...+...+++.+|+.+.+...+. |.  |-...
T Consensus       475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~  550 (799)
T KOG4162|consen  475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM  550 (799)
T ss_pred             CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence            3 3433333  33456788999999999999998755668899999999999999999999999887654 21  11111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCC-----CCCHHHHHHHHHHH
Q 006437          329 NVLIDCLSKMGSYDDALDVYDGLLEL-KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEV-----EADLVVYNALLSYF  402 (645)
Q Consensus       329 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~  402 (645)
                      ..-+..-...++.+++......+..- .-.+.+          ...++-....+....+..     .....++..+..-.
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~  620 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV  620 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence            11222233356677766665555431 000000          001111111222211111     11122222222211


Q ss_pred             HHcC---ChHHHHHHHHHHHHCCCCCCH--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          403 CKAG---FPNQAVKLYNTMLDKGFTPDN--------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       403 ~~~g---~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      ...+   ..+..      |....+.|+.        ..+......+...+..++|...+.+.....+. ....|......
T Consensus       621 a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~  693 (799)
T KOG4162|consen  621 ASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLL  693 (799)
T ss_pred             Hhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHH
Confidence            1111   11111      2211122221        12334455667778888888777777655433 56667777778


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI--LYSQMKHIAVPP-NAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~  548 (645)
                      +...|.+++|.+.|......+ |.++...+++...+.+.|+..-|..  ++..+.+  +.| +...|..+...+.+.|+.
T Consensus       694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccch
Confidence            888899999999998888765 4457788889999999998877777  8888888  445 788999999999999999


Q ss_pred             HHHHHHHHHHHHCCC
Q 006437          549 KMVKRLLQDVIDARI  563 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~  563 (645)
                      +.|.+.|+...+...
T Consensus       771 ~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  771 KQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999998876543

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=6e-09  Score=108.83  Aligned_cols=248  Identities=10%  Similarity=0.020  Sum_probs=177.8

Q ss_pred             ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437           62 SDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRL--------TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE  133 (645)
Q Consensus        62 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  133 (645)
                      +.+.|+.+|+.+....+  .++..|..+..++...        .+++++|...+++..+.. +-+...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            46799999999887655  4566676665544321        245789999999998876 457788888888899999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437          134 MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPN-FLSFNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      ++++|...|++..+.+ +.+...+..+..++...|++++|+..+++..  .|+ ...+..++..+...|++++|...+++
T Consensus       353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999999875 5567888999999999999999999999875  333 23344445556778999999999999


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 006437          211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG-CSPN  289 (645)
Q Consensus       211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~  289 (645)
                      ..+...+-+...+..+..++...|+.++|...+..+.... +.+....+.+...|...|  +.|...++.+.+.. ..+.
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~  508 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN  508 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence            8765422245567778888899999999999999876542 223445566666777777  47777777766431 1222


Q ss_pred             hhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437          290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESE  319 (645)
Q Consensus       290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  319 (645)
                      ...+  +-..|.-.|+.+.+..+ +++.+.
T Consensus       509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            2223  33334445565555555 666654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.9e-06  Score=80.21  Aligned_cols=297  Identities=13%  Similarity=0.070  Sum_probs=206.5

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCC
Q 006437          193 CNLCKLNDVSNVKDVIGMMVRKG-FYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS-VNAWTVLIDGFRRLRR  270 (645)
Q Consensus       193 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~  270 (645)
                      .+.+-.++-..+...+-.+.... ++-|......+.+.+...|+.++|+-.|+.....+  |+ ...-....-.+.+.|+
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~  281 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGG  281 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccC
Confidence            34455666666666665554333 45577788999999999999999999999987643  22 1111112223457888


Q ss_pred             HHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          271 LDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      ++....+...+.... .-+...|-.-.......++++.|+.+-+...+.... +...|-.-...+...++.++|.-.|..
T Consensus       282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~  359 (564)
T KOG1174|consen  282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT  359 (564)
T ss_pred             HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence            888888888776531 123444555555666788999999998887765322 344454445678889999999999988


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 006437          351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF  430 (645)
Q Consensus       351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  430 (645)
                      .+..  .|                               -+..+|.-++..|...|++.+|.-.-+...+. ++.+..+.
T Consensus       360 Aq~L--ap-------------------------------~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L  405 (564)
T KOG1174|consen  360 AQML--AP-------------------------------YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL  405 (564)
T ss_pred             HHhc--ch-------------------------------hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence            7763  22                               24556666777777777777776665554443 23344555


Q ss_pred             HHHH-HHHH-cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          431 VGLL-RGLC-GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       431 ~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      ..+. ..|. ....-++|..+++...+..|. -....+.+...+...|..+++..++++.+..  .||....+.|...+.
T Consensus       406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~  482 (564)
T KOG1174|consen  406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR  482 (564)
T ss_pred             hhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence            4442 2222 233457889999888777665 4556678888999999999999999998875  489999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPPNA  532 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p~~  532 (645)
                      ..+.+++|.+.|.....  +.|+.
T Consensus       483 A~Ne~Q~am~~y~~ALr--~dP~~  504 (564)
T KOG1174|consen  483 AQNEPQKAMEYYYKALR--QDPKS  504 (564)
T ss_pred             HhhhHHHHHHHHHHHHh--cCccc
Confidence            99999999999999988  56743

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=7.7e-09  Score=96.10  Aligned_cols=194  Identities=13%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHH
Q 006437          120 QTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLC  196 (645)
Q Consensus       120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~  196 (645)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..   +.+...+..+...+.
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            334444444455555555555555544332 2233444444444444444444444444332   122223333334444


Q ss_pred             hcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437          197 KLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAG  275 (645)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  275 (645)
                      ..|++++|.+.+++..+....+ ....+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence            4444444444444443321111 12233334444444555555555555444432 112334444444444445555555


Q ss_pred             HHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437          276 YLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDML  316 (645)
Q Consensus       276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  316 (645)
                      +.+++..+. .+.+...+..+...+...|+.+.|..+.+.+
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            444444433 1222333333344444444444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=3.2e-09  Score=94.93  Aligned_cols=231  Identities=13%  Similarity=0.047  Sum_probs=171.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437          294 TSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS  373 (645)
Q Consensus       294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  373 (645)
                      +-+.++|.+.|.+.+|.+.|+.-.+.  .|-+.||..+-+.|.+..++..|+.++.+-.+.  .|.              
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~--------------  288 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPF--------------  288 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCc--------------
Confidence            55667777777777777777766665  345556666777777777777777777665552  222              


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437          374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI  453 (645)
Q Consensus       374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  453 (645)
                                       ++....-+.+.+-..++.++|.++|+...+.. +.+......+...|.-.++.+.|..+|+.+
T Consensus       289 -----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi  350 (478)
T KOG1129|consen  289 -----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI  350 (478)
T ss_pred             -----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence                             22223345566667788889999998887753 345556666667777888999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437          454 VMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN  531 (645)
Q Consensus       454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~  531 (645)
                      ...|.. ++..|..+.-+|.-.++++-++.-|++....--.|+  ...|-.+.......|++.-|.+.|+-.+..+ .-+
T Consensus       351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h  428 (478)
T KOG1129|consen  351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH  428 (478)
T ss_pred             HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence            988887 788888888888888999999988888876543344  5678888888888899999999999887643 335


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       532 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      ...++.|.-.-.+.|+.+.|..++.......
T Consensus       429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  429 GEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            7788888888889999999999998887644

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.17  E-value=1.5e-08  Score=100.58  Aligned_cols=243  Identities=19%  Similarity=0.222  Sum_probs=133.7

Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESE-----GH-APDLV-FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF  363 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  363 (645)
                      .+...+...|...|+++.|+.+++...+.     |. .|... ..+.+...|...+++++|..+|+++...-..      
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------  273 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------  273 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence            44445666677777777777777665543     21 12222 2334667788889999999999887652000      


Q ss_pred             HHHHHHHHhcCCcccHHHHHhcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-hhHHHHHH
Q 006437          364 CSLLSTVCLSGRFSLLPKLVCGLEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLD-----KGF-TPDN-YSFVGLLR  435 (645)
Q Consensus       364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~~-~~~~~ll~  435 (645)
                                        ++ . ...|. ..+++.|...|.+.|++++|...++...+     .|. .|.. .-++.+..
T Consensus       274 ------------------~~-G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  274 ------------------VF-G-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             ------------------hc-C-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence                              00 0 01111 23445555556666666666555554432     111 1221 23445555


Q ss_pred             HHHcCCCHHHHHHHHHHHHHc---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C---CCChhhHH
Q 006437          436 GLCGARKIDEAINVYQGIVMN---NPAV----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----Y---PLDVVSYT  501 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~  501 (645)
                      .|+..+++++|..++....+.   -+.+    -..+++.|...|.+.|++++|.+++++++...    .   .-....++
T Consensus       334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~  413 (508)
T KOG1840|consen  334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN  413 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence            667777777777777755432   1111    23455667777777777777777776665431    1   11133456


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh----hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMK----HIAV-PPN-AYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~----~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      .|...|.+.++.++|.++|.+..    ..|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus       414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            66666666666666666666532    2221 122 3456666666666666666666666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.14  E-value=2.4e-07  Score=93.45  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437          431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG  510 (645)
Q Consensus       431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  510 (645)
                      ..+.+.|...|++++|.++++..+.+.|. .+..|..-...+-..|++.+|.+.++...... .-|-..-+..+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence            34444455556666666666655555444 34555555556666666666666666655543 22444444555555566


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          511 GRTEEAYILYSQMKHIAVPPNAY------T--YRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       511 g~~~~A~~~~~~m~~~~~~p~~~------~--~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      |+.++|.+++......+..|-..      +  ..-...+|.+.|++..|++.+..+.
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666666666665444333111      1  1223456667777777666555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.13  E-value=2.2e-07  Score=93.79  Aligned_cols=288  Identities=13%  Similarity=0.042  Sum_probs=178.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-h-----
Q 006437          264 GFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS-K-----  337 (645)
Q Consensus       264 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-----  337 (645)
                      .+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+  |+...|...+..+. -     
T Consensus        13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence            345566666666666554332 22223334445556666666677776666666653  33333333332222 1     


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHH
Q 006437          338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF-PNQAVKLYN  416 (645)
Q Consensus       338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~  416 (645)
                      ..+.+...++|+++...-  |.......+.-                                .+..... -..+..++.
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L--------------------------------~~~~g~~F~~~~~~yl~  135 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPL--------------------------------DFLEGDEFKERLDEYLR  135 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhc--------------------------------ccCCHHHHHHHHHHHHH
Confidence            123555666666665432  21111111100                                0000001 123455566


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----C----------CCCcHH--HHHHHHHHHHhcCCHHH
Q 006437          417 TMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN----N----------PAVNAH--VHTAIVDRLIEAGRCHK  480 (645)
Q Consensus       417 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~  480 (645)
                      .+..+|+++   +|+.+-..|......+-..+++......    +          -.|...  ++.-+...|...|++++
T Consensus       136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~  212 (517)
T PF12569_consen  136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK  212 (517)
T ss_pred             HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            667777653   3455555555555555555555554432    1          123333  34557888999999999


Q ss_pred             HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          481 AIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       481 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      |++.+++.++..  |+ +..|..-.+.+-+.|++++|.+.++..+... .-|...-+-....+.+.|+.++|.+++....
T Consensus       213 Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  213 ALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             HHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence            999999999874  65 7788899999999999999999999999854 3477777777888899999999999999998


Q ss_pred             HCCCCcCH--------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          560 DARIELDY--------HTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       560 ~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +.+..|..        ......+.+|.+.|++..|++.|....
T Consensus       290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            76654422        112455678999999999888776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=8.4e-06  Score=79.65  Aligned_cols=445  Identities=13%  Similarity=0.081  Sum_probs=243.1

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH--HHHHHH--
Q 006437           90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI--VMDVLF--  165 (645)
Q Consensus        90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~--  165 (645)
                      ++.+.. .+++++|......+...+ +-+.+.+..-+-+..+.+.+++|+.+.+.-..      ..+++.  +=.+||  
T Consensus        19 ln~~~~-~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   19 LNRHGK-NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHhcc-chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence            344445 677888888877777765 45666677777777778888888754443211      111111  234444  


Q ss_pred             hcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          166 KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLG  244 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~  244 (645)
                      +.+..++|+..++.....+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-.       +... +
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-Q  162 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-H
Confidence            56788888888885555555566666677778888888888888887764321 1111111111111       1111 0


Q ss_pred             HHHHcCCCcCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------------CCCChh-chHHHHHHHHhcCChh
Q 006437          245 LMITLGTSLSVNAWTVL---IDGFRRLRRLDMAGYLWEKMVQNG-------------CSPNVV-TYTSLIKGFMEAKMFS  307 (645)
Q Consensus       245 ~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~-------------~~~~~~-~~~~li~~~~~~~~~~  307 (645)
                      .+......| ..+|..+   ...++..|++.+|+++++.....+             +.-... .-.-+...+...|+.+
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            122222222 2233332   334567788888888888772211             000000 1112344566778888


Q ss_pred             HHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCCHH-HHHHHHHHHHHCC-------C---CCCHhhH-HHHHHHHH
Q 006437          308 IAFSFLDMLESEGHAPDLVF----HNVLIDCLSKMGSYD-DALDVYDGLLELK-------L---VPDSYTF-CSLLSTVC  371 (645)
Q Consensus       308 ~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~~~~-------~---~~~~~~~-~~ll~~~~  371 (645)
                      +|..++....+... +|...    -|.++..-....-++ .++..++......       +   .-..... +.++..| 
T Consensus       242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-  319 (652)
T KOG2376|consen  242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-  319 (652)
T ss_pred             HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            88888888877643 34322    222222111111111 1111221111000       0   0001111 1222222 


Q ss_pred             hcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437          372 LSGRFSLLPKLVCGLEVEADLVVYNALLSYFC--KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV  449 (645)
Q Consensus       372 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  449 (645)
                       .+..+.+.++........-...+.+++....  +.....++.+++...-+....-.......+++.....|+++.|.++
T Consensus       320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence             3344455555544333222334444444332  2335777888887776653222234555566677889999999999


Q ss_pred             HH--------HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHH----HHHHHhcCCHHH
Q 006437          450 YQ--------GIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE--KYPLDVVSYTVA----IRGLLEGGRTEE  515 (645)
Q Consensus       450 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l----~~~~~~~g~~~~  515 (645)
                      +.        .+.+.+  ..+.+..+++..+.+.++-+.|-.++.+.+..  ...+.....+++    ...-.+.|+-++
T Consensus       399 l~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  399 LSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence            98        333333  34556677888888888877777777766532  011222333333    334457799999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      |..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus       477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            999999999853 56889999999999876 567776665544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.11  E-value=1.3e-07  Score=94.24  Aligned_cols=203  Identities=17%  Similarity=0.084  Sum_probs=127.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC-----CC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437          296 LIKGFMEAKMFSIAFSFLDMLESE-----GH--APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS  368 (645)
Q Consensus       296 li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  368 (645)
                      +...|...+++++|..+|+++...     |-  +.-..+++.|...|.+.|++++|...++...+---.        +. 
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--------~~-  317 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--------LL-  317 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--------hh-
Confidence            455566666666666666666542     21  112345666667777888887777777665541000        00 


Q ss_pred             HHHhcCCcccHHHHHhcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcC
Q 006437          369 TVCLSGRFSLLPKLVCGLEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDK---GFTPD----NYSFVGLLRGLCGA  440 (645)
Q Consensus       369 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~  440 (645)
                                       ....|.+ ..++.+...++..+++++|..+++...+.   -+.++    ..+++.|...|...
T Consensus       318 -----------------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~  380 (508)
T KOG1840|consen  318 -----------------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM  380 (508)
T ss_pred             -----------------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence                             0011111 12344555566677777777766654431   11222    35678888888888


Q ss_pred             CCHHHHHHHHHHHHHcC----C---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHH
Q 006437          441 RKIDEAINVYQGIVMNN----P---AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----K--YPLDVVSYTVAIRGL  507 (645)
Q Consensus       441 ~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~  507 (645)
                      |++++|.++++.++...    .   .-....++.+...|.+.+++++|.++|.+....    |  .+-...+|..|...|
T Consensus       381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y  460 (508)
T KOG1840|consen  381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY  460 (508)
T ss_pred             cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            89988888888876542    1   112445677888888888888888888765432    2  122357899999999


Q ss_pred             HhcCCHHHHHHHHHHHh
Q 006437          508 LEGGRTEEAYILYSQMK  524 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~  524 (645)
                      .+.|+++.|+++.+...
T Consensus       461 ~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  461 RAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHcccHHHHHHHHHHHH
Confidence            99999999999988765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.11  E-value=8e-08  Score=82.27  Aligned_cols=196  Identities=14%  Similarity=0.031  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      +...+.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+-|++.++..++ +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            45566778999999999999999999874 335667888888999999999999999999998877 8888999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a  551 (645)
                      ..|++++|...|++......-+ -..+|..+..+..+.|+.+.|...|++..+  ..| ...+...+.....+.|++-.|
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence            9999999999999998763222 367899999999999999999999999998  445 577888999999999999999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..+++.....+. ++..+.-..++.-.+.|+.+.|.+.=.++.
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999887766 789999899999999999998887766665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=6.4e-06  Score=83.26  Aligned_cols=226  Identities=10%  Similarity=0.065  Sum_probs=146.7

Q ss_pred             cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHc-C-------C-CCCHHHHHHHHHHH
Q 006437           59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARV-G-------C-VIKAQTFLLFLRIY  129 (645)
Q Consensus        59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~-------~-~~~~~~~~~li~~~  129 (645)
                      ..|+.+.|.+-.+.+       .+-.+|..|.+.+.+ .++.+-|.-++-.|... |       . .++ .+=..+....
T Consensus       740 tiG~MD~AfksI~~I-------kS~~vW~nmA~McVk-T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA  810 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-------KSDSVWDNMASMCVK-TRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA  810 (1416)
T ss_pred             EeccHHHHHHHHHHH-------hhhHHHHHHHHHhhh-hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence            456777777666555       356789999999999 78888888777776431 1       1 122 2223333344


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCcchHHHHH
Q 006437          130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPN-FLSFNIALCNLCKLNDVSNVKDVI  208 (645)
Q Consensus       130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~  208 (645)
                      ...|.+++|..+|.+-.+.         ..|=+.|-..|.|++|.++-+.-..-. ..||.....-+-..++.+.|++.|
T Consensus       811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy  881 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY  881 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence            5779999999999988764         345566777899999999887543222 235655566666677777777777


Q ss_pred             HHH----------HHCCC---------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 006437          209 GMM----------VRKGF---------YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR  269 (645)
Q Consensus       209 ~~m----------~~~~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  269 (645)
                      ++.          +....         .-|...|.-....+-..|+.+.|+.+|....         .|-++++..|-.|
T Consensus       882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qG  952 (1416)
T KOG3617|consen  882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQG  952 (1416)
T ss_pred             HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeecc
Confidence            652          11110         1123334444444445667777777765443         3555666667778


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          270 RLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE  317 (645)
Q Consensus       270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  317 (645)
                      +.++|-++-++-      -|......+.+.|-..|++.+|..+|.+..
T Consensus       953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            888887766542      355666677888888888888888887654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=6.6e-06  Score=84.98  Aligned_cols=322  Identities=14%  Similarity=0.109  Sum_probs=171.6

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437          219 NVRMFEILLNCFCKMGRIAEAYQLLGLMITL--GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL  296 (645)
Q Consensus       219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  296 (645)
                      |+...+..++++...+-..+-.++++.+.-.  .+.-+...-|.|+-...+ -+.....++.+++..-+ .|      .+
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence            3334444455555555555555555555421  111112222333322222 23334444444443221 11      12


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437          297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF  376 (645)
Q Consensus       297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  376 (645)
                      ......++-+++|..+|+...     .+....+.++.-   .+..+.|.+.-++..      .+.+|..+..+-.+.|.+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence            333444555566666665432     233333333322   234444444433321      345666666666666666


Q ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 006437          377 SLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN  456 (645)
Q Consensus       377 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  456 (645)
                      .+|.+-+-.   ..|+..|.-++....+.|.+++-.+++...+++.-.|...  +.|+-+|++.+++.+.++++.     
T Consensus      1121 ~dAieSyik---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIK---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred             HHHHHHHHh---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----
Confidence            666665533   2355666777777777777777777766666554444433  356666777666666555432     


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437          457 NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR  536 (645)
Q Consensus       457 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  536 (645)
                        .|+......+.+-|...|.++.|.-+|.         ++.-|..|...+...|++..|....++.      .+..||.
T Consensus      1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred             --CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence              3445555556666666666666665554         3344666777777777777666554443      2446677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      -+-.+|...+.+..|     +|-..++.....-...|++.|...|-+++.+.+++...
T Consensus      1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            777777666555433     22233344456666777777777888877777776654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.7e-05  Score=80.66  Aligned_cols=494  Identities=9%  Similarity=0.062  Sum_probs=250.0

Q ss_pred             CChHHHHHHHhcCCChHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006437           48 LAPHIVHSTLLNCPSDLIALSFFIWCAKQRDY--FHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLF  125 (645)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  125 (645)
                      .+-..++++..+.|-...|++.|..+..-.+.  +.+...=..+...+.+  -.++.+.++++.|...++.-+..+...+
T Consensus       607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~--lsve~s~eclkaml~~NirqNlQi~VQv  684 (1666)
T KOG0985|consen  607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGS--LSVEDSLECLKAMLSANIRQNLQIVVQV  684 (1666)
T ss_pred             ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34456666677777777788777554332110  0111112234445555  5688999999999988887788888777


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC-----------CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-------------
Q 006437          126 LRIYWRGEMYGMVLEAFDEMGRF-----------GFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-------------  181 (645)
Q Consensus       126 i~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------------  181 (645)
                      ..-|...=-.+..+++|+.....           ++.-|+.+.-..|.+.++.|++.+..++.++..             
T Consensus       685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLke  764 (1666)
T KOG0985|consen  685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE  764 (1666)
T ss_pred             HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHh
Confidence            77777776667778888776533           346677777788999999999999888765432             


Q ss_pred             --CC----------------ChhhH------HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh-------------HH
Q 006437          182 --LP----------------NFLSF------NIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-------------FE  224 (645)
Q Consensus       182 --~~----------------~~~~~------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------~~  224 (645)
                        -+                |.+.|      -..|..|.+.-++...-.+...+...+.  +...             ..
T Consensus       765 AkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~d  842 (1666)
T KOG0985|consen  765 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVD  842 (1666)
T ss_pred             ccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChH
Confidence              01                11111      1223334433333322222222222111  1111             11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH-HHH---HHHH-----HHH-c----------
Q 006437          225 ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDM-AGY---LWEK-----MVQ-N----------  284 (645)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~---~~~~-----m~~-~----------  284 (645)
                      -|..-.-+.++..--...++.....|.. |+.++|+|...|...++-.+ -++   .|+.     ..+ +          
T Consensus       843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe  921 (1666)
T KOG0985|consen  843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE  921 (1666)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence            2223333445555555566666666644 66777777666654332111 000   0000     000 0          


Q ss_pred             -C------------------------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHh
Q 006437          285 -G------------------------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHA--PDLVFHNVLIDCLSK  337 (645)
Q Consensus       285 -~------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~  337 (645)
                       |                        .+.|...|..++.     ..-.--.+++++....++.  .|.......+.++..
T Consensus       922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt  996 (1666)
T KOG0985|consen  922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT  996 (1666)
T ss_pred             ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence             0                        0011111211110     0000112233333322211  122222333344444


Q ss_pred             cCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHH---------------------------HHHhcCCcccHHHHHhcCCC
Q 006437          338 MGSYDDALDVYDGLLELK--LVPDSYTFCSLLS---------------------------TVCLSGRFSLLPKLVCGLEV  388 (645)
Q Consensus       338 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~---------------------------~~~~~~~~~~a~~~~~~~~~  388 (645)
                      .+-..+-+++++++.-.+  +.-+...-+.|+-                           .....+-+++|..+|+....
T Consensus       997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen  997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred             cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc
Confidence            444444444444433110  0000001111111                           11112223334443322211


Q ss_pred             ------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006437          389 ------------------------EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID  444 (645)
Q Consensus       389 ------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  444 (645)
                                              ...+..|+.+..+-.+.|...+|++-|-+.      -|+..|..++..+.+.|.++
T Consensus      1077 n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence                                    123456777777777777777776655322      24556777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      +-.+++....++.-+|..  -+.|+-+|++.+++.+.++++.       .||......+.+-|...|.++.|.-+|... 
T Consensus      1151 dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV- 1220 (1666)
T ss_pred             HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-
Confidence            777777666655444333  3567777777777766655432       267666777777777777777666655433 


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          525 HIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       525 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                              .-|..|...+...|+++.|...-+++      .+..+|...-.+|...+
T Consensus      1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred             --------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence                    33566666667777777766554433      24566766666665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.04  E-value=1.1e-07  Score=81.54  Aligned_cols=171  Identities=15%  Similarity=0.066  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      +...|.-.|...|+...|..-+++.++..+. +..++..+...|.+.|..+.|.+-|++.++.. +.+-.+.|....-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            4555677899999999999999999998877 78889999999999999999999999999875 557889999999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAV  587 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  587 (645)
                      ..|++++|...|++....-.-| -+.||..+..+..+.|+.+.|.+++++.++.+.. .+.....+.+...+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            9999999999999988643333 4678999999999999999999999999998766 5667778899999999999999


Q ss_pred             HHHHHHHHCCCCCChh
Q 006437          588 NQLVEMCNLGLIPDEM  603 (645)
Q Consensus       588 ~~~~~m~~~g~~p~~~  603 (645)
                      ..+++....|. ++..
T Consensus       194 ~~~~~~~~~~~-~~A~  208 (250)
T COG3063         194 LYLERYQQRGG-AQAE  208 (250)
T ss_pred             HHHHHHHhccc-ccHH
Confidence            99999987765 5544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.99  E-value=6.3e-05  Score=85.10  Aligned_cols=200  Identities=14%  Similarity=0.075  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHH
Q 006437          397 ALLSYFCKAGFPNQAVKLYNTMLDK----GFT--P-DNYSFVGLLRGLCGARKIDEAINVYQGIVMN----NPAVNAHVH  465 (645)
Q Consensus       397 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~  465 (645)
                      .+...+...|++++|...+++..+.    +..  + ....+..+...+...|++++|...+.+....    +.......+
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  615 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL  615 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence            3344455566666666655554331    110  0 1112223333444556666666666554432    111112223


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHH
Q 006437          466 TAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSY-----TVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYR  536 (645)
Q Consensus       466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~  536 (645)
                      ..+...+...|+++.|.+.++++..... ......+     ...+..+...|+.+.|..++...........   ...+.
T Consensus       616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  695 (903)
T PRK04841        616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR  695 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence            3344455566666666666655533210 0000001     0111233345666666666555432111111   01123


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          537 VMLLSFCKERNIKMVKRLLQDVIDA----RIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       537 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      .+..++...|++++|...++++.+.    +..+ ...+...+..++.+.|+.++|.+.+.+..+.
T Consensus       696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455556666666666666665432    2111 1234455555666666666666666666544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=5e-06  Score=80.39  Aligned_cols=427  Identities=13%  Similarity=0.096  Sum_probs=220.7

Q ss_pred             HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437           57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG  136 (645)
Q Consensus        57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  136 (645)
                      ....++++.|+..|..+..-.+  +|-..|.--..+++. .|+++.|..=-.+-++.. +..+..|.....++.-.|+++
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~-~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYAS-LGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHH-HhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence            4466889999999988777655  588888888888998 688888877666666654 446678999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHH-----HHHHhcCCcchHHHHHHHH
Q 006437          137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIAL-----CNLCKLNDVSNVKDVIGMM  211 (645)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~m  211 (645)
                      +|+..|.+-.+.. +.+...++.|..++....   .+.+.|.   .|  ..|..+.     +.+...    .+....-+.
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---~p--~~~~~l~~~p~t~~~~~~----~~~~~~l~~  154 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---KP--YFHEKLANLPLTNYSLSD----PAYVKILEI  154 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---Cc--HHHHHhhcChhhhhhhcc----HHHHHHHHH
Confidence            9999999988764 556677777777771111   1111111   11  1111111     111111    111111111


Q ss_pred             HHCCCCCCH-hh---HHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          212 VRKGFYPNV-RM---FEILLNCFCKMGRIAEAYQLLGLMITLG-------TSLSVNAWTVLIDGFRRLRRLDMAGYLWEK  280 (645)
Q Consensus       212 ~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  280 (645)
                      .+.+  |+. ..   ...++.+.......+.-     .+...+       ..|.           .+..+   ......+
T Consensus       155 ~~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~-----------~~~~~---~~~~~~d  213 (539)
T KOG0548|consen  155 IQKN--PTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC-----------KQEHN---GFPIIED  213 (539)
T ss_pred             hhcC--cHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc-----------cccCC---CCCccch
Confidence            1111  110 00   01111111111111000     000001       1111           00000   0000000


Q ss_pred             HHH-cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437          281 MVQ-NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPD  359 (645)
Q Consensus       281 m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  359 (645)
                      +.+ .....-..-...+..+..+..+++.|.+-+....+..  -++.-++....+|...|....+...-+...+.|.. .
T Consensus       214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~  290 (539)
T KOG0548|consen  214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L  290 (539)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence            000 0000112224455666667777777877777776654  35555566667777777777777766665554421 1


Q ss_pred             HhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437          360 SYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG  439 (645)
Q Consensus       360 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  439 (645)
                      ..-|+.+..++.+                         +-.+|.+.++++.++..|.+.......|+..         .+
T Consensus       291 rad~klIak~~~r-------------------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~  336 (539)
T KOG0548|consen  291 RADYKLIAKALAR-------------------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SK  336 (539)
T ss_pred             HHHHHHHHHHHHH-------------------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HH
Confidence            1122222222211                         2234555667777777776655443333221         12


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL  519 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  519 (645)
                      ....+++....+...-.++.. ..-...=.+.+.+.|++..|...|.+++... |-|...|..-..+|.+.|.+..|+.-
T Consensus       337 lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D  414 (539)
T KOG0548|consen  337 LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD  414 (539)
T ss_pred             HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence            223333333333333223222 1111122555666777777777777777665 45677777777777777777777777


Q ss_pred             HHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          520 YSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       520 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .+...+.  .|+ ...|.-=..++....++++|.+.|++.++.+
T Consensus       415 a~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  415 AKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6666663  343 3344444444555566777777777666654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.95  E-value=5.8e-05  Score=73.16  Aligned_cols=150  Identities=11%  Similarity=0.044  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          443 IDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYS  521 (645)
Q Consensus       443 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  521 (645)
                      .+....+++++......--..+|-.+++...+..-+..|..+|.++.+.+..+ ++...++++.-||. ++.+.|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            55566666666655333344567777887788888888999999888887666 67777888876665 57788888888


Q ss_pred             HHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          522 QMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       522 ~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      --..  ..+| +.--...++-+...++-..++.+|++....++.+|  ...|..+++.-..-|+...+.++-+++..
T Consensus       426 LGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            7554  2344 33444566777888888888889998887755554  57888888888888888888888777653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.94  E-value=6.2e-05  Score=75.44  Aligned_cols=192  Identities=19%  Similarity=0.180  Sum_probs=111.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437          296 LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR  375 (645)
Q Consensus       296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  375 (645)
                      .+.+....+++.+|+.+++.+..+..  -..-|..+...|+..|+++.|.++|.+.         ..++-.+.+|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence            34555666777777777777766532  2334566677777788888887777543         234456677778888


Q ss_pred             cccHHHHHh-cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006437          376 FSLLPKLVC-GLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV  454 (645)
Q Consensus       376 ~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  454 (645)
                      |+.|.++-. .++.......|-+-..-+-++|++.+|.++|-.+.    .|+     ..|+.|-+.|..+...++.++- 
T Consensus       807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~-  876 (1636)
T KOG3616|consen  807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH-  876 (1636)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh-
Confidence            877777763 34444455566666666667777777776664322    233     2355666666666666555432 


Q ss_pred             HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437          455 MNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL  519 (645)
Q Consensus       455 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  519 (645)
                        .+..-..+...+..-|...|++..|.+-|-+.-+         |.+-++.|...+-+++|.++
T Consensus       877 --h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  877 --HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             --ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence              1222233444455556666666666665544321         34444445555555555444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.92  E-value=2.3e-05  Score=78.33  Aligned_cols=58  Identities=5%  Similarity=0.085  Sum_probs=32.3

Q ss_pred             hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 006437           50 PHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELA  111 (645)
Q Consensus        50 ~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~  111 (645)
                      .....+++.+.+.+.+|.+....-..   ...|......+..++.+ ..-++.|-++|+.+.
T Consensus       618 ~laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik-~elydkagdlfeki~  675 (1636)
T KOG3616|consen  618 GLAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIK-GELYDKAGDLFEKIH  675 (1636)
T ss_pred             cHHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHh-hHHHHhhhhHHHHhh
Confidence            34445666677777666655422111   12355666666666666 455666666666653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.92  E-value=3.9e-08  Score=92.23  Aligned_cols=147  Identities=12%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCC
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGR  512 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  512 (645)
                      +...|++++|.++++..      .+.......+.+|.+.++++.|.+.++.|.+..  .| .+...+..++..    .++
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence            33455555555554321      134444445555556666666666666555432  12 222223332221    124


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 006437          513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSS-SSAVNQLV  591 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~  591 (645)
                      +.+|..+|+++.+. ..+++.+++.+..++...|++++|.+++++..+.+.. ++.+...++-+....|+. +.+.+.+.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            55666666665442 3445555556666666666666666666655544433 445555555555555555 33445555


Q ss_pred             HHH
Q 006437          592 EMC  594 (645)
Q Consensus       592 ~m~  594 (645)
                      +++
T Consensus       261 qL~  263 (290)
T PF04733_consen  261 QLK  263 (290)
T ss_dssp             HCH
T ss_pred             HHH
Confidence            555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.91  E-value=0.00014  Score=74.94  Aligned_cols=513  Identities=12%  Similarity=0.111  Sum_probs=284.6

Q ss_pred             CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437           60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL  139 (645)
Q Consensus        60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  139 (645)
                      .++..+|+.-.+...++.|-.+.+.++.++  .+.+ .|+.++|..+++.....+. .|..|...+-.+|...+..++|.
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r-~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFR-LGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHH-hcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence            346778999998888875533333333333  3446 6899999999998877764 38888999999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHh----HHHHHHhhcCCCChhhHHHHHHHHHhc-CCc---------chHH
Q 006437          140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVD----LGIKVLKETQLPNFLSFNIALCNLCKL-NDV---------SNVK  205 (645)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~ll~~~~~~-g~~---------~~a~  205 (645)
                      .+|++..+.  -|+......+..+|.+.+.+.    .|+++++..+..--.-|+. ++.+.+. ...         .-|.
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence            999999865  567888888888999887764    4677777655433333443 3332221 111         2345


Q ss_pred             HHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          206 DVIGMMVRKG-FYPNVRMFEILLNCFCKMGRIAEAYQLLG-LMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       206 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      +.++.+.+.+ ---+..-...-...+...|.+++|..++. ...+.-..-+...-+--++.+...+++.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            5666665543 11122223333445567788999999984 333433444555666778889999999999999999988


Q ss_pred             cCCCCChhchHHHHHHHHh----------------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCCHHHH
Q 006437          284 NGCSPNVVTYTSLIKGFME----------------AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS---KMGSYDDA  344 (645)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a  344 (645)
                      .|  +|.  |...+..+.+                .+..+...+..++.....   ....|-+-+.+..   .-|+.+++
T Consensus       255 k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~  327 (932)
T KOG2053|consen  255 KG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEM  327 (932)
T ss_pred             hC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHH
Confidence            75  343  4443332211                112222222222222211   1122333333333   34666665


Q ss_pred             HHHHHHHHHCCCCC----C---------HhhHHHHHHHHHhcCC-cccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---
Q 006437          345 LDVYDGLLELKLVP----D---------SYTFCSLLSTVCLSGR-FSLLPKLVCGLEVEADLVVYNALLSYFCKAGF---  407 (645)
Q Consensus       345 ~~~~~~~~~~~~~~----~---------~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~---  407 (645)
                      ...|-+  +-|-.|    |         ..-...++..+....+ .....+.+..         +...+..-.-.|.   
T Consensus       328 ~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~---------h~c~l~~~rl~G~~~~  396 (932)
T KOG2053|consen  328 LSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ---------HLCVLLLLRLLGLYEK  396 (932)
T ss_pred             HHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH---------HHHHHHHHHHhhcccc
Confidence            544422  112111    1         1111223333322211 1111111110         1111111111221   


Q ss_pred             --hHHHHHHHHHHH---HC------CCCCCHh---------hHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCcHHH
Q 006437          408 --PNQAVKLYNTML---DK------GFTPDNY---------SFVGLLRGLCGARKID---EAINVYQGIVMNNPAVNAHV  464 (645)
Q Consensus       408 --~~~a~~~~~~m~---~~------~~~p~~~---------~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~  464 (645)
                        .+....++.+..   ++      +.-|+..         +.+.|+..|.+.++..   +|+-+++......+. |..+
T Consensus       397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~  475 (932)
T KOG2053|consen  397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQT  475 (932)
T ss_pred             CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHH
Confidence              122233332221   12      2334433         3456677787777765   455555555554433 5555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK  544 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  544 (645)
                      --.+++.|+-.|-+..|.++|+.+--+.+.-|...|-. ..-+...|++..+...+......=-..-..+-..+..|| +
T Consensus       476 KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r  553 (932)
T KOG2053|consen  476 KLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-R  553 (932)
T ss_pred             HHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-H
Confidence            66788999999999999999998876665555444432 234455677777777776655320011122333334444 5


Q ss_pred             cCCHHHHHHHHH---HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          545 ERNIKMVKRLLQ---DVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       545 ~g~~~~a~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .|.+++..++..   ++....-..-..+-+..++.+...++.++-...++.|.   .+|...
T Consensus       554 ~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~  612 (932)
T KOG2053|consen  554 RGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSED  612 (932)
T ss_pred             cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchh
Confidence            566666655543   22221111124445666677778888888888888876   555433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=8.1e-05  Score=75.65  Aligned_cols=59  Identities=10%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437          512 RTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS  570 (645)
Q Consensus       512 ~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  570 (645)
                      +..+.+.-.+.|.+...-|+    ...|..++..+...++++.|-+.+++|....+..|..+|
T Consensus      1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred             hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence            33344444444444332232    345667777777777777777777777765554444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.89  E-value=7.4e-07  Score=85.14  Aligned_cols=201  Identities=11%  Similarity=-0.026  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      ..|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...|+..++..+. +...+..+..++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l  142 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            445666667788888888888888887753 335677888888888888999988888888887766 566777788888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      ...|++++|.+.|++..+..  |+..........+...++.++|...+.+.... ..|+...+   .......|+...+ 
T Consensus       143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-  215 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-  215 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-
Confidence            88889999998888888764  43221122222234567788888888765532 23332221   2223335555444 


Q ss_pred             HHHHHHHH---CCCC--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          553 RLLQDVID---ARIE--L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       553 ~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +.++.+.+   ..++  | ....|..++..+.+.|++++|...|++..+.+ .|+.+
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~  271 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFV  271 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHH
Confidence            34444442   1111  1 24578888888889999999999998888543 23444

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.88  E-value=1.2e-06  Score=83.60  Aligned_cols=115  Identities=15%  Similarity=0.052  Sum_probs=52.1

Q ss_pred             ChHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437           62 SDLIALSFFIWCAKQRDYFHD--VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL  139 (645)
Q Consensus        62 ~~~~A~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  139 (645)
                      ..+.++.-+..+....+..|+  +..|..+..++.. .|+++.|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            334455555444432221111  2334444444444 455555555555554443 233444555555555555555555


Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437          140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKE  179 (645)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  179 (645)
                      ..|+...+.. +.+..++..+..++...|++++|.+.|++
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555554432 22334444444444444555555544444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.88  E-value=8.4e-06  Score=81.09  Aligned_cols=190  Identities=9%  Similarity=-0.057  Sum_probs=92.7

Q ss_pred             HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcC
Q 006437           57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL---FLRIYWRGE  133 (645)
Q Consensus        57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~  133 (645)
                      +...++++.|.+.+.......+-..+......+-.......|+++.|.+.+++..... +.+...+..   ........+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~   94 (355)
T cd05804          16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSG   94 (355)
T ss_pred             HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhccccc
Confidence            3344555555555544433322222322222222222222577777777777766553 223333321   111111233


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437          134 MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      ....+.+.++... ...+........+...+...|++++|.+.+++..   +.+...+..+..++...|++++|...+++
T Consensus        95 ~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~  173 (355)
T cd05804          95 MRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES  173 (355)
T ss_pred             CchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            4444444444311 1112223344445556666777777777776654   33445556666666677777777777766


Q ss_pred             HHHCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          211 MVRKGF-YPNV--RMFEILLNCFCKMGRIAEAYQLLGLMIT  248 (645)
Q Consensus       211 m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (645)
                      ..+... .|+.  ..|..+...+...|+.++|..+++....
T Consensus       174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            655321 1221  2344566666677777777777776643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.87  E-value=3.4e-05  Score=80.04  Aligned_cols=472  Identities=11%  Similarity=0.006  Sum_probs=260.5

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHh
Q 006437           99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLK  178 (645)
Q Consensus        99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  178 (645)
                      +...+...|-+..+.. +.=...|..|...|+...+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3444544444444432 1234467777777777778888888888887665 4567778888888888888888888743


Q ss_pred             hcCCCCh-----hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 006437          179 ETQLPNF-----LSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL  253 (645)
Q Consensus       179 ~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  253 (645)
                      ...+.+.     ..|....-.|.+.++...++.-|+...+.. +-|...|..+..+|...|++..|.++|.+.....  |
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence            3322111     123333344667788888888888887764 2267788888889999999999999888777643  3


Q ss_pred             CHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHcC------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 006437          254 SVNAWTV--LIDGFRRLRRLDMAGYLWEKMVQNG------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE------  319 (645)
Q Consensus       254 ~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------  319 (645)
                      +. .|..  ..-.-+..|.+.+|...+..+....      ..--..++..+...+.-.|-..+|.++++.-.+.      
T Consensus       628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            22 2222  2223456788888888887776421      0111223333333344444444455554443321      


Q ss_pred             -CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc---c---cHHHHH-hcCCCCCC
Q 006437          320 -GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF---S---LLPKLV-CGLEVEAD  391 (645)
Q Consensus       320 -~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~-~~~~~~~~  391 (645)
                       ....+...|..+          ..|..+|-... .. .|+......+..-.-..+..   +   .+.+.+ .......+
T Consensus       707 h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~  774 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH  774 (1238)
T ss_pred             HhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc
Confidence             101111111111          12222222222 11 12222222222211122221   1   011111 11111222


Q ss_pred             HHHHHHHHHHHHH----cC----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437          392 LVVYNALLSYFCK----AG----FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH  463 (645)
Q Consensus       392 ~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  463 (645)
                      ..+|..+...|.+    .|    +...|+..+...++.. ..+..+++.|. .....|++.-+...|-+-....+. ...
T Consensus       775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~-~~~  851 (1238)
T KOG1127|consen  775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPT-CHC  851 (1238)
T ss_pred             cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcccc-chh
Confidence            3344434333322    11    2236777777766542 23455555554 446667888777777766665554 566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--h--hCCCCCCHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM--K--HIAVPPNAYTYRVML  539 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m--~--~~~~~p~~~~~~~ll  539 (645)
                      +|..+.-.+.+..+++-|...|....... |.|...|--........|+.-++..+|..-  .  ..|-.|+..-|....
T Consensus       852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t  930 (1238)
T KOG1127|consen  852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT  930 (1238)
T ss_pred             heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence            77777778888899999999999887664 456777777666667778888888887762  1  223344444444444


Q ss_pred             HHHHhcCCHHHHHHHHHHH----------HHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          540 LSFCKERNIKMVKRLLQDV----------IDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      .-....|+.++-+...+++          ....+. +...|...+..+.+.+.+++|.++..+.
T Consensus       931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~-~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQ-LCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc-hhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4445556655544333332          222222 4566666666666777777666665554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.81  E-value=4.7e-05  Score=75.74  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=12.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh
Q 006437          503 AIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      ...++...|+.++|..+++.+.
T Consensus       270 ~a~~~~~~~~~~~a~~~L~~l~  291 (355)
T cd05804         270 AALALAGAGDKDALDKLLAALK  291 (355)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHH
Confidence            3444455556666666665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.2e-05  Score=71.64  Aligned_cols=193  Identities=14%  Similarity=0.170  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH-HHHHHH
Q 006437           86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN-IVMDVL  164 (645)
Q Consensus        86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~  164 (645)
                      +.+.+.-+.+ ..++.+|++++..-.+.. +.+......+..+|....++..|-..|+++-..  .|...-|. .-...+
T Consensus        13 ftaviy~lI~-d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   13 FTAVVYRLIR-DARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             hHHHHHHHHH-HhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            5555666666 577778887777665553 236666777777777778888888888877654  34433332 233445


Q ss_pred             HhcCCHhHHHHHHhhcCC-CChhhHHHHHH--HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          165 FKIGRVDLGIKVLKETQL-PNFLSFNIALC--NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ  241 (645)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (645)
                      -+.+.+.+|+.+...+.. ++...-..-+.  ..-..+++..+..++++....|   +..+.+...-...+.|+.+.|.+
T Consensus        89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence            567777777777777664 22222222222  2234567777777776654332   33333344444456677777777


Q ss_pred             HHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437          242 LLGLMITL-GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS  287 (645)
Q Consensus       242 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  287 (645)
                      -|+...+- |.. ....||..+. +.+.++++.|++...++.++|++
T Consensus       166 kFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  166 KFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence            77776654 333 3445655443 33556777777777777777654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=5.8e-07  Score=84.45  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI-KMVKRL  554 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~  554 (645)
                      +.+.+|..+|+++.+. +++++.+.|.+..++...|++++|.+++.+..+.+ +-++.++..++......|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            3456666666665433 34566666666666666666666666666655422 22455555666655555655 455556


Q ss_pred             HHHHHHC
Q 006437          555 LQDVIDA  561 (645)
Q Consensus       555 ~~~~~~~  561 (645)
                      +.++.+.
T Consensus       259 l~qL~~~  265 (290)
T PF04733_consen  259 LSQLKQS  265 (290)
T ss_dssp             HHHCHHH
T ss_pred             HHHHHHh
Confidence            6665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.77  E-value=0.00015  Score=66.33  Aligned_cols=319  Identities=11%  Similarity=0.054  Sum_probs=154.5

Q ss_pred             HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHH---HHHHhcCCcchHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcC
Q 006437          159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIAL---CNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-FEILLNCFCKMG  234 (645)
Q Consensus       159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~  234 (645)
                      -+...+...|++.+|+.-|......|+..|.++.   ..|...|+...|+.-+...++.  +||-.. -..-...+.+.|
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence            3445555566666666666666555555554443   3466667777777666666654  455332 222234556777


Q ss_pred             CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437          235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD  314 (645)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  314 (645)
                      .++.|..-|+.+.+.....+  +   ...++.+.--.++-..                ....+..+...|+...|+....
T Consensus       121 ele~A~~DF~~vl~~~~s~~--~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHEPSNG--L---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             cHHHHHHHHHHHHhcCCCcc--h---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHH
Confidence            77777777777776532211  0   0011111111111111                1122333444555555555555


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH-hcCCCCCCHH
Q 006437          315 MLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLV  393 (645)
Q Consensus       315 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~  393 (645)
                      .+.+.. +-|...|..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.+...+ +.+...||..
T Consensus       180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            555542 2355555555556666666666655555444321 112223333333334444443333333 1222333322


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH---HHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH---TAIVD  470 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~  470 (645)
                      .+-..      -....+..+.++.|.+                ....+++.++.+-.+...+..+......+   ..+-.
T Consensus       258 ~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~  315 (504)
T KOG0624|consen  258 LCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT  315 (504)
T ss_pred             hHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence            11110      1111222222222221                22344555555555555555544222222   23445


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ++...+++.+|++...+.++.. +.|+.++---..+|.-...++.|+.-|+...+
T Consensus       316 C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  316 CYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             cccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            5556667777777777776653 33466666666677766777777777777766

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.74  E-value=7.1e-05  Score=77.82  Aligned_cols=182  Identities=10%  Similarity=0.009  Sum_probs=129.5

Q ss_pred             CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437           60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL  139 (645)
Q Consensus        60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  139 (645)
                      ..+...|+..|-...+...  .=...|..|-..|.. ..+...|...|....+.. ..+..........|++..+++.|.
T Consensus       471 rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDV--SLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence            3466788888877666544  246678888888888 457888999998887765 346677888889999999999999


Q ss_pred             HHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 006437          140 EAFDEMGRFG-FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKG  215 (645)
Q Consensus       140 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  215 (645)
                      .+.-..-+.. ...-..-|....-.|.+.++...|..-|+...   +.|...|..+..+|...|++..|.++|.+.... 
T Consensus       547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-  625 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-  625 (1238)
T ss_pred             HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence            8833322211 01112233334445677888999999998765   556678889999999999999999999888765 


Q ss_pred             CCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006437          216 FYPNVRMFEI--LLNCFCKMGRIAEAYQLLGLMIT  248 (645)
Q Consensus       216 ~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~  248 (645)
                       .|+. +|..  ..-.-+..|.+.++...+..+..
T Consensus       626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             3432 2322  23345677899999998888764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=4.5e-06  Score=83.57  Aligned_cols=186  Identities=12%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      |...|.+|+..|+..+|..+..+..++  +||..-|..+.+.....--+++|.++.+....       ..-..+.....+
T Consensus       427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~  497 (777)
T KOG1128|consen  427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILS  497 (777)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH-------HHHHhhcccccc
Confidence            444444444444444444444444442  34444444444443333334444444333211       111111222222


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      .++++++.+.|+...+.+ +....+|-.+..+..+.++++.|.+.|.....  ..| +...|+.+-.+|.+.|+-.+|..
T Consensus       498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            344444444444444332 22344444444444444444444444444444  333 23344444444444444444444


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          554 LLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      .+++..+.+.+ +...|...+-...+-|.+++|++.+.++
T Consensus       575 ~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  575 KLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            44444444422 3334444444444444444444444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.7e-05  Score=70.68  Aligned_cols=194  Identities=17%  Similarity=0.210  Sum_probs=108.6

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH-HH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL-IK  298 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~  298 (645)
                      ..-+..++..+.+..+++.|++++....+.. +.+......|..+|....++..|-+.++++...  .|...-|... ..
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ   86 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            3346667777777788888888877766653 226667777777888888888888888887764  3554444322 34


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437          299 GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC--LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF  376 (645)
Q Consensus       299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  376 (645)
                      .+.+.+.+..|+.+...|.+.   ++...-..-+.+  ....+++..+..++++....|   +..+.+...-...+.|++
T Consensus        87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence            556677778888877777653   222211111222  223456666666666554322   222332222233455666


Q ss_pred             ccHHHHHhc---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437          377 SLLPKLVCG---LEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF  423 (645)
Q Consensus       377 ~~a~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  423 (645)
                      +.|.+-|+.   .+--.....||.-+. +.+.|+++.|++...+++++|+
T Consensus       161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI  209 (459)
T ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence            666665522   111122344444333 3345556666666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=2.2e-06  Score=83.54  Aligned_cols=248  Identities=16%  Similarity=0.166  Sum_probs=170.2

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccH
Q 006437          300 FMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLL  379 (645)
Q Consensus       300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  379 (645)
                      +.+.|++.+|.-.|+....+... +...|..|.......++-..|+..+.+..+.  .|+                    
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~--------------------  351 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPT--------------------  351 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--------------------
Confidence            45566677777777666665322 4556666666666666666666666666552  221                    


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHcCCCHHHHHH
Q 006437          380 PKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL-----------RGLCGARKIDEAIN  448 (645)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~  448 (645)
                                 +....-.|.-.|...|.-.+|+..++.-+....+     |..+.           ..+.....+....+
T Consensus       352 -----------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~  415 (579)
T KOG1125|consen  352 -----------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQE  415 (579)
T ss_pred             -----------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHH
Confidence                       3445556666677777777777777766543210     00000           11222233445555


Q ss_pred             HHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437          449 VYQGIVMN-NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       449 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  527 (645)
                      +|-++... +..+|..+...|.-.|.-.|++++|..-|+.++..+ |-|..+||-|...++...+.++|+..|.+.++  
T Consensus       416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--  492 (579)
T KOG1125|consen  416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--  492 (579)
T ss_pred             HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--
Confidence            66665555 435788889999999999999999999999999875 55789999999999999999999999999999  


Q ss_pred             CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437          528 VPPNA-YTYRVMLLSFCKERNIKMVKRLLQDVIDARI---------ELDYHTSIRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       528 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~  589 (645)
                      ++|+. .+...|.-+|...|.+++|.+.|-.++...-         .++...|..|=.++.-.++.|-+.+.
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            78974 4677788899999999999999887764211         12345777776667777777655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=0.00013  Score=82.60  Aligned_cols=329  Identities=12%  Similarity=-0.030  Sum_probs=137.3

Q ss_pred             hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CcC--HHhHHHHHHHHHhc
Q 006437          197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGT------SLS--VNAWTVLIDGFRRL  268 (645)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~  268 (645)
                      ..|+.+.+.++++.+.......+..........+...|+++++...+......-.      .+.  ......+...+...
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  465 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND  465 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence            3455555555554432111111122222333444556677777666665543210      011  11112223344566


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCh----hchHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcC
Q 006437          269 RRLDMAGYLWEKMVQNGCSPNV----VTYTSLIKGFMEAKMFSIAFSFLDMLESE----GH-APDLVFHNVLIDCLSKMG  339 (645)
Q Consensus       269 ~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~  339 (645)
                      |++++|...+++....--..+.    ...+.+...+...|++++|...+++....    |. .....++..+...+...|
T Consensus       466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G  545 (903)
T PRK04841        466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG  545 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence            7777777776665542101111    12233444455667777776666665432    10 011123334445566667


Q ss_pred             CHHHHHHHHHHHHH----CCCC--C-CHhhHHHHHHHHHhcCCcccHHHHHhcC-------CCCCCHHHHHHHHHHHHHc
Q 006437          340 SYDDALDVYDGLLE----LKLV--P-DSYTFCSLLSTVCLSGRFSLLPKLVCGL-------EVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       340 ~~~~a~~~~~~~~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~li~~~~~~  405 (645)
                      +++.|...+++..+    .+..  + ....+..+...+...|++++|...+...       +.......+..+...+...
T Consensus       546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  625 (903)
T PRK04841        546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR  625 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence            77777766665543    1111  0 1122223333444455555555444221       1000122233334444555


Q ss_pred             CChHHHHHHHHHHHHCCCC-CCHhhH-----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 006437          406 GFPNQAVKLYNTMLDKGFT-PDNYSF-----VGLLRGLCGARKIDEAINVYQGIVMNNPAVN---AHVHTAIVDRLIEAG  476 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g  476 (645)
                      |++++|...+.+....... .....+     ...+..+...|+.+.|..++...........   ...+..+..++...|
T Consensus       626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence            5555555555554321000 000000     0011222334555555555444332111100   001223444455555


Q ss_pred             CHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          477 RCHKAIQLFRRAIVE----KYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +.++|...++++...    +..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus       706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555554432    11111 22333444445555555555555555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.2e-05  Score=69.06  Aligned_cols=250  Identities=12%  Similarity=0.147  Sum_probs=161.2

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHH
Q 006437          338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYN  416 (645)
Q Consensus       338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~  416 (645)
                      .|++..++..-.......  .+...-..+-++|...|.......-...-. .|.......+...+...++.+..+ ++.+
T Consensus        21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E   97 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYE   97 (299)
T ss_pred             hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence            445555444433322211  233333334455555555444333332211 333334443434344444444433 3444


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437          417 TMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD  496 (645)
Q Consensus       417 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  496 (645)
                      .+.......+......-...|++.+++++|.+..+...      +......=+..+.+..+++-|.+.+++|.+..   +
T Consensus        98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e  168 (299)
T KOG3081|consen   98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---E  168 (299)
T ss_pred             HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence            55554444443444444556889999999999877621      33344444566778889999999999998764   6


Q ss_pred             hhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 006437          497 VVSYTVAIRGLLEG----GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIR  572 (645)
Q Consensus       497 ~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  572 (645)
                      -.+.+.|..++.+.    +...+|.-+|++|.+. ..|+..+.+....++...|++++|..+++........ ++.+...
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N  246 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN  246 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence            77788788777643    4788999999999864 5789999999999999999999999999999988776 7888888


Q ss_pred             HHHHHHhcCChhHHH-HHHHHHHHCCCCCChh
Q 006437          573 LTKFIFKFHSSSSAV-NQLVEMCNLGLIPDEM  603 (645)
Q Consensus       573 l~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~  603 (645)
                      ++-+-...|+..++. +.+.+.+.  ..|...
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~  276 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQLKL--SHPEHP  276 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence            888878888876655 57777774  345444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.62  E-value=0.00013  Score=66.72  Aligned_cols=167  Identities=9%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHH-
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTA-  467 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~-  467 (645)
                      |...|..-..+|...|.+..|+.=++...+..-. +..++..+-..+...|+.+.+....++..+.++..-.  ..|.. 
T Consensus       188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            4445555556666667666666655555443221 2333444445555666666666666665554432110  01111 


Q ss_pred             --HH------HHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HH
Q 006437          468 --IV------DRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AY  533 (645)
Q Consensus       468 --l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~  533 (645)
                        +.      ......+++.++.+..+...+..  |.     ...+..+-.++...+++.+|++...+.++  +.|+ ..
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~  342 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHH
Confidence              11      11223445555555555555443  22     12233333444555666666666666655  4443 55


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      ++.--..+|.-..+++.|+.-++.+.+.+
T Consensus       343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  343 VLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            66666666666666666666666665544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=1.1e-05  Score=71.18  Aligned_cols=159  Identities=18%  Similarity=0.154  Sum_probs=126.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437          431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG  510 (645)
Q Consensus       431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  510 (645)
                      ..+-..+...|+-+....+........+. +.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            55556666777777777776665444433 66677778888888999999999999888765 77889999999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437          511 GRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       511 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  589 (645)
                      |++++|..-|.+..+  +.| ++..++.+.-.+.-.|+.+.|..++......+.. |..+-..|.......|++++|.++
T Consensus       148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence            999999999999888  556 5678888888888899999999999888776554 777888888888899999988887


Q ss_pred             HHHHH
Q 006437          590 LVEMC  594 (645)
Q Consensus       590 ~~~m~  594 (645)
                      ...-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            66543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.62  E-value=6.9e-06  Score=72.82  Aligned_cols=116  Identities=11%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF-CKERN--IKMV  551 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~--~~~a  551 (645)
                      ++.+++...+++.++.+ +.|...|..+...|...|++++|...|++..+  +.| +...+..+..++ ...|+  .++|
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            33444444444444433 33455555555555555555555555555554  233 344444444432 34344  3555


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .+++++..+.++. +...+..+...+.+.|++++|+..|+++.+
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555554443 445555555555555555555555555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=4e-05  Score=82.35  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=154.9

Q ss_pred             ChhchHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006437          289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESE-GHAP---DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFC  364 (645)
Q Consensus       289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  364 (645)
                      +...|...|....+.++.++|.++.++.... ++.-   -...|.++++.-..-|.-+...++|+++.+..         
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------
Confidence            3455666666666666666666666666543 1111   11234445554445555566666666655421         


Q ss_pred             HHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006437          365 SLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID  444 (645)
Q Consensus       365 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  444 (645)
                                               .....|..|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+..+-+
T Consensus      1528 -------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1528 -------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred             -------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHH
Confidence                                     12345677778888888888888888888875 2345667888888888888888


Q ss_pred             HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          445 EAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      .|..++.+..+.-++. ......-.+..-.+.|+.+++..+|+..+... |--...|+.+++.-.++|+.+.+..+|++.
T Consensus      1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            8888888887765442 34445556677778888888888888887653 446778888888888888888888888888


Q ss_pred             hhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          524 KHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       524 ~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      ...++.|-  ...|...+..=...|+-+.+..+-.++
T Consensus      1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             HhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            88777763  344555555555556655554443333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=0.00015  Score=70.53  Aligned_cols=202  Identities=15%  Similarity=0.092  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH-------HH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH-------TA  467 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~  467 (645)
                      ...+.++..+..+++.|++-+....+..  -+..-++....++...|.+......-+..++.|-. ...-+       ..
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            4456667777788888888888877753  34444455556677777777776666666555432 11112       22


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHH
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY-------------------------TVAIRGLLEGGRTEEAYILYSQ  522 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~  522 (645)
                      +..+|.+.++++.+...|.+.+.....|+...=                         ..-...+.+.|++..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            344677778888888888887765544443211                         1113345677889999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437          523 MKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE  602 (645)
Q Consensus       523 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~  602 (645)
                      +.... +-|...|..-.-+|.+.|.+..|+.-.+..++.++. ....|..=+.++....++++|.+.|.+.++.  .|+.
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~  459 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN  459 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence            88754 336778888888888999999888887777776433 3444444455566667888888888887743  4555


Q ss_pred             h
Q 006437          603 M  603 (645)
Q Consensus       603 ~  603 (645)
                      .
T Consensus       460 ~  460 (539)
T KOG0548|consen  460 A  460 (539)
T ss_pred             H
Confidence            4

>PF12854 PPR_1: PPR repeat

Probab=98.60  E-value=7.2e-08  Score=56.99  Aligned_cols=32  Identities=38%  Similarity=0.669  Sum_probs=20.7

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          492 KYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       492 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      |+.||..+||+||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45666666666666666666666666666665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.60  E-value=0.00082  Score=65.53  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV  160 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (645)
                      -|..+|+.||+-+..  +..+++++.++++...- +.+...+..-|+.-.+..+++.+..+|.+....-  .+...|...
T Consensus        18 ~di~sw~~lire~qt--~~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY   92 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQT--QPIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY   92 (656)
T ss_pred             ccHHHHHHHHHHHcc--CCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence            389999999987776  48999999999998763 4567778888999999999999999999988653  456666666


Q ss_pred             HHHHH
Q 006437          161 MDVLF  165 (645)
Q Consensus       161 l~~~~  165 (645)
                      ++---
T Consensus        93 l~YVR   97 (656)
T KOG1914|consen   93 LSYVR   97 (656)
T ss_pred             HHHHH
Confidence            65443

>PLN02789 farnesyltranstransferase

Probab=98.56  E-value=0.0001  Score=70.41  Aligned_cols=231  Identities=11%  Similarity=0.051  Sum_probs=149.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHH
Q 006437          335 LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG-FPNQAVK  413 (645)
Q Consensus       335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~  413 (645)
                      +...+..++|+.+.+++++.  .|+                               +..+|+..-..+...| ++++++.
T Consensus        47 l~~~e~serAL~lt~~aI~l--nP~-------------------------------~ytaW~~R~~iL~~L~~~l~eeL~   93 (320)
T PLN02789         47 YASDERSPRALDLTADVIRL--NPG-------------------------------NYTVWHFRRLCLEALDADLEEELD   93 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHH--Cch-------------------------------hHHHHHHHHHHHHHcchhHHHHHH
Confidence            34455677788877777763  222                               2233444444444555 5688888


Q ss_pred             HHHHHHHCCCCCCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          414 LYNTMLDKGFTPDNYSFVGLLRGLCGARK--IDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       414 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  491 (645)
                      .++++.+...+ +..+|+.-...+.+.|+  .+++..+++.+++..++ +..+|+...-++...|+++++++.++++++.
T Consensus        94 ~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789         94 FAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             HHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            88888775422 33344433333444454  36678888888887776 7778888888888888888898888888887


Q ss_pred             CCCCChhhHHHHHHHHHhc---CC----HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 006437          492 KYPLDVVSYTVAIRGLLEG---GR----TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE----RNIKMVKRLLQDVI  559 (645)
Q Consensus       492 ~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~  559 (645)
                      + +.|...|+.....+.+.   |.    .+++++...++..  ..| |...|+.+...+...    +...+|.+...+..
T Consensus       172 d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        172 D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence            6 44677777776666554   22    2456777767766  445 667787777777663    34566878887777


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHHHCCCCCChh--hhH
Q 006437          560 DARIELDYHTSIRLTKFIFKFH------------------SSSSAVNQLVEMCNLGLIPDEM--WRK  606 (645)
Q Consensus       560 ~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~g~~p~~~--w~~  606 (645)
                      +.++. +......|++.|+...                  ..++|.++++.+.  ...|=..  |.+
T Consensus       249 ~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~~  312 (320)
T PLN02789        249 SKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYWAW  312 (320)
T ss_pred             cccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHHHH
Confidence            65544 6777888888887532                  2366888888883  3444333  554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.54  E-value=1.4e-05  Score=74.10  Aligned_cols=184  Identities=11%  Similarity=-0.007  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--H
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--H  463 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  463 (645)
                      .....+-.+...+.+.|++++|...|+++....  |+.    ..+..+..++...|++++|...++.+.+..+....  .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            345667777778888889999998888887752  321    35566777888888888888888888877664222  2


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 006437          464 VHTAIVDRLIEA--------GRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT  534 (645)
Q Consensus       464 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  534 (645)
                      .+..+..++.+.        |+.++|.+.++++....  |+ ...+..+.....    ....      .        ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence            344455555544        66778888888877653  33 222222211100    0000      0        001


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          535 YRVMLLSFCKERNIKMVKRLLQDVIDARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       535 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ...+...+.+.|++++|...++.+.+..+. | ....+..++.++.+.|++++|.+.++.+..
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            124556788899999999999998875432 2 467888999999999999999999888864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.53  E-value=1.6e-07  Score=55.46  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhc
Q 006437          149 GFTPNTFARNIVMDVLFKIGRVDLGIKVLKET  180 (645)
Q Consensus       149 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~  180 (645)
                      |+.||..+||.||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56667777777777777777777777666665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=0.00022  Score=71.97  Aligned_cols=214  Identities=16%  Similarity=0.145  Sum_probs=127.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437          294 TSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS  373 (645)
Q Consensus       294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  373 (645)
                      ..+...+...|-...|..+++++..         |..++.+|+..|+..+|..+..+..+  -+|+...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            3444455555556666665555432         33455555555655555555555444  234444444444443333


Q ss_pred             CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437          374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI  453 (645)
Q Consensus       374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  453 (645)
                      .-++.|.++.+.....    .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+.|...
T Consensus       471 s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             HHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            3344444443221110    00111111223577778887777655542 224456666666667778888888888877


Q ss_pred             HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          454 VMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ..-.+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus       546 vtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  546 VTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             hhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            766655 67778888888888888888888888887766 44566677777777788888888888877754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.46  E-value=4.3e-05  Score=70.82  Aligned_cols=183  Identities=11%  Similarity=0.000  Sum_probs=124.6

Q ss_pred             CCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----
Q 006437          358 PDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEAD----LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY----  428 (645)
Q Consensus       358 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----  428 (645)
                      .....+..+...+...|+++.|...++.. ...|+    ...+..+...+...|++++|+..++++.+..  |+..    
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence            34566777888899999999999998543 23333    2466778889999999999999999998853  3222    


Q ss_pred             hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006437          429 SFVGLLRGLCGA--------RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY  500 (645)
Q Consensus       429 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  500 (645)
                      ++..+..++...        |+.+.|.+.++.+....+. +...+..+.....    ...      ..        ....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence            344444555543        7789999999999988766 3322222211110    000      00        0111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          501 TVAIRGLLEGGRTEEAYILYSQMKHIAV-PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      ..+...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2455678888999999999999876320 12 3567888899999999999999988887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=0.00018  Score=69.27  Aligned_cols=184  Identities=17%  Similarity=0.135  Sum_probs=129.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437          389 EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAI  468 (645)
Q Consensus       389 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  468 (645)
                      .|+...+...+.+......-..+..++.+-.+.  .-..--|..-+ .+...|.++.|+..+..++...++ |.......
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~  346 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELA  346 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHH
Confidence            345555555555444333333333333222221  11222344444 344678899999999998888776 88888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN  547 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  547 (645)
                      .+.+.+.++..+|.+.+++++...  |+ ...+-.+..+|.+.|++.+|+.+++...... +-|+..|..|..+|...|+
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence            999999999999999999998874  55 6677778889999999999999999887642 5588899999999999998


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      ..++..-..                  +.|...|++++|+..+....+..
T Consensus       424 ~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         424 RAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence            887765543                  45566788888888888877653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.44  E-value=1.1e-05  Score=67.47  Aligned_cols=91  Identities=9%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                      ....+...|++++|...|+.+.... +.+...|..+..++.+.|++++|+..|++..+  ..| +...+..+..++...|
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcC
Confidence            3444445555555555555554443 33444555555555555555555555555554  223 4444555555555555


Q ss_pred             CHHHHHHHHHHHHHC
Q 006437          547 NIKMVKRLLQDVIDA  561 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~  561 (645)
                      +.++|...++...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.44  E-value=5.3e-05  Score=67.21  Aligned_cols=150  Identities=12%  Similarity=0.153  Sum_probs=115.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006437          399 LSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRC  478 (645)
Q Consensus       399 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  478 (645)
                      +..|...|+++.+..-.+.+..    |.        ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence            3567888888876444332221    11        0122366778888888888888777 888899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGL-LEGGR--TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRL  554 (645)
Q Consensus       479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~  554 (645)
                      ++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++..+  ..| +..++..+...+...|++++|...
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998875 45788888888764 67676  5999999999998  445 678888889999999999999999


Q ss_pred             HHHHHHCCCC
Q 006437          555 LQDVIDARIE  564 (645)
Q Consensus       555 ~~~~~~~~~~  564 (645)
                      |+++.+....
T Consensus       167 ~~~aL~l~~~  176 (198)
T PRK10370        167 WQKVLDLNSP  176 (198)
T ss_pred             HHHHHhhCCC
Confidence            9999886543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.43  E-value=1.2e-05  Score=67.41  Aligned_cols=112  Identities=5%  Similarity=-0.002  Sum_probs=95.0

Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      .++++.++..  |+  .+..+...+.+.|++++|...|+....  ..| +...+..+..++...|++++|...++++.+.
T Consensus        14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4556665542  43  366678888999999999999999988  455 7889999999999999999999999999997


Q ss_pred             CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          562 RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       562 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ++. ++..+..+..++.+.|++++|.+.+++..+  ..|+..
T Consensus        88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~  126 (144)
T PRK15359         88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA  126 (144)
T ss_pred             CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence            765 889999999999999999999999999984  567655

>PLN02789 farnesyltranstransferase

Probab=98.43  E-value=0.00041  Score=66.28  Aligned_cols=147  Identities=7%  Similarity=0.091  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CC----HHHH
Q 006437          409 NQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA---GR----CHKA  481 (645)
Q Consensus       409 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a  481 (645)
                      ++++.+++.+.+.. +-+...|....-++...|+++++.+.++++++.++. +...|+.....+.+.   |.    .++.
T Consensus       125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence            44555555555542 123445555555555556666666666666665554 444444444333332   21    2456


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----------
Q 006437          482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEG----GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER-----------  546 (645)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----------  546 (645)
                      .....+++... |-|...|+.+...+...    ++..+|.+.+.+....+ ..++..+..|++.|+...           
T Consensus       203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~  280 (320)
T PLN02789        203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVD  280 (320)
T ss_pred             HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence            66666666654 45778888888877763    34456777777766532 336777888888887532           


Q ss_pred             -------CHHHHHHHHHHHH
Q 006437          547 -------NIKMVKRLLQDVI  559 (645)
Q Consensus       547 -------~~~~a~~~~~~~~  559 (645)
                             ..++|.++++.+.
T Consensus       281 ~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        281 TLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             ccccccccHHHHHHHHHHHH
Confidence                   2356777777663

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.39  E-value=0.00028  Score=76.14  Aligned_cols=231  Identities=16%  Similarity=0.139  Sum_probs=159.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~  405 (645)
                      ..|-.-|......++.++|.++.+++... +.+.                           ...--...|.++++.-...
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R---------------------------EeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFR---------------------------EEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc---------------------------hhHHHHHHHHHHHhHHHhh
Confidence            44555566666667777777777666542 1110                           0011133566666666667


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLF  485 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  485 (645)
                      |.-+...++|++..+.-  -....|..|...|.+.+.+++|.++++.|.++.- ....+|...+..+.+..+-+.|.+++
T Consensus      1511 G~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred             CcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHH
Confidence            77778888888887741  1234577788888888999999999999888744 47778888888888888888888888


Q ss_pred             HHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          486 RRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       486 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      +++++.= |-  .+......+..-.+.|+.+++..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++
T Consensus      1588 ~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1588 KRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             HHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            8887642 21  34445555666678888888888888887632 33567888888888888998999999998888777


Q ss_pred             CcC--HHHHHHHHHHHHhcCChhHHHHH
Q 006437          564 ELD--YHTSIRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       564 ~~~--~~~~~~l~~~~~~~g~~~~A~~~  589 (645)
                      .|-  ...|...+..--+.|+-+.+..+
T Consensus      1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             ChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence            653  34566666655566665544433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00038  Score=61.12  Aligned_cols=164  Identities=16%  Similarity=0.238  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR-GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      .|..++-+....|+.+-|...++.+.++-  |.+.-...+-. -+-..|++++|.++++.+.+.++. |..++---+...
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAil  130 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence            35555666677888888999999888763  44332222222 234578899999999999888755 667776666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC---CH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER---NI  548 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g---~~  548 (645)
                      -..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-  +.| ++..+..+...+...|   +.
T Consensus       131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            6777777888888877765 567999999999999999999999999999887  567 5556666666665554   56


Q ss_pred             HHHHHHHHHHHHCCC
Q 006437          549 KMVKRLLQDVIDARI  563 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~  563 (645)
                      ..+.+++.+..+...
T Consensus       208 ~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  208 ELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHhCh
Confidence            778889988887554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=9.3e-05  Score=72.56  Aligned_cols=258  Identities=15%  Similarity=0.077  Sum_probs=181.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437          265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDA  344 (645)
Q Consensus       265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  344 (645)
                      +.+.|++.+|.-.|+...+.. +-+...|..|-.....+++-..|+..+++..+.... +....-.|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence            467888999999999888764 447788999988889999999999999998886332 566777788889999999999


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHCCC
Q 006437          345 LDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTM-LDKGF  423 (645)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~  423 (645)
                      ...++..+....+- .    .+..+ ...++.+.-       +..++..             ......++|-++ .+.+.
T Consensus       373 l~~L~~Wi~~~p~y-~----~l~~a-~~~~~~~~~-------~s~~~~~-------------~l~~i~~~fLeaa~~~~~  426 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKY-V----HLVSA-GENEDFENT-------KSFLDSS-------------HLAHIQELFLEAARQLPT  426 (579)
T ss_pred             HHHHHHHHHhCccc-h----hcccc-CccccccCC-------cCCCCHH-------------HHHHHHHHHHHHHHhCCC
Confidence            99998887643210 0    00000 000000000       0011111             123344444444 34554


Q ss_pred             CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHH
Q 006437          424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTV  502 (645)
Q Consensus       424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~  502 (645)
                      .+|......|.-.|--.|.+++|...|+.++...|. |..+||-|...++...+.++|...|+++++..  |+ +.+...
T Consensus       427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyN  503 (579)
T KOG1125|consen  427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYN  503 (579)
T ss_pred             CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehh
Confidence            567777777777788899999999999999998887 89999999999999999999999999999864  65 677788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIA---------VPPNAYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      |.-+|...|.+++|.+.|-..+...         ..++...|.+|=.+++-.++.+.+.+
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            8889999999999999888765321         11234566666666666666654433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.36  E-value=0.00013  Score=77.13  Aligned_cols=146  Identities=15%  Similarity=0.127  Sum_probs=105.9

Q ss_pred             CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437          423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV  502 (645)
Q Consensus       423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  502 (645)
                      ...+...+..|.....+.|..++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            4445677777777777888888888888888777666 56666777778888888888888888887764 445666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      +..++.+.|++++|+.+|+++...  .| +..++..+..++...|+.++|...|++..+..- +....|+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence            777778888888888888888762  34 467788888888888888888888888776422 233444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.35  E-value=0.00028  Score=74.60  Aligned_cols=180  Identities=13%  Similarity=0.070  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAI  468 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  468 (645)
                      .++..+-.|.....+.|.+++|..+++...+.  .|+. .....+...+.+.+++++|....++.....+. +......+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            34677888889999999999999999999985  5664 45667788899999999999999999999887 88888999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  548 (645)
                      ..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|....|+..+.      +.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~  232 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DL  232 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HH
Confidence            999999999999999999999844 445889999999999999999999999999875 2455566655542      23


Q ss_pred             HHHHHHHHHHHH----CCCCcCHHHHHHHHHHHHhc
Q 006437          549 KMVKRLLQDVID----ARIELDYHTSIRLTKFIFKF  580 (645)
Q Consensus       549 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~  580 (645)
                      ..-...++.+.-    .|...........+-.|.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            333444444431    22222345566666666554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.32  E-value=0.00016  Score=63.91  Aligned_cols=158  Identities=13%  Similarity=0.109  Sum_probs=112.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437          396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA  475 (645)
Q Consensus       396 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  475 (645)
                      ..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+.....+. |...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence            33445556667766666666654432 1223344455677777888888888888887776655 778888888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLL  555 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  555 (645)
                      |+++.|..-|.+..+.. +.+...+|.|.-.|.-.|+.+.|..++......+ .-|+.+-..+..+....|++++|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            88888888888877763 3456777888888888888888888888877643 236777777777888888888887775


Q ss_pred             HH
Q 006437          556 QD  557 (645)
Q Consensus       556 ~~  557 (645)
                      ..
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            54

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.28  E-value=0.00031  Score=75.09  Aligned_cols=132  Identities=12%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      .+..+..+|.+.|+.+++..+++++++..+. ++.+.|.+...|... ++++|.+++.+++..               +.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence            4444455555555555555555555555433 455555555555555 555555555544432               22


Q ss_pred             hcCCHHHHHHHHHHHhh------------------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437          509 EGGRTEEAYILYSQMKH------------------I-AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT  569 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~------------------~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  569 (645)
                      ..+++..+.++|.++..                  . |..--..++-.+-..|...++++++..+++.+.+...+ +...
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a  259 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKA  259 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhh
Confidence            22233333333333322                  2 22222344555556667778888999999988887666 6666


Q ss_pred             HHHHHHHHH
Q 006437          570 SIRLTKFIF  578 (645)
Q Consensus       570 ~~~l~~~~~  578 (645)
                      ...++.+|.
T Consensus       260 ~~~l~~~y~  268 (906)
T PRK14720        260 REELIRFYK  268 (906)
T ss_pred             HHHHHHHHH
Confidence            777777765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.00082  Score=59.08  Aligned_cols=188  Identities=13%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             cCChHHHHHHHHHHHH---CC-CCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437          405 AGFPNQAVKLYNTMLD---KG-FTPDNYS-FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (645)
                      ..++++..+++.++..   .| ..++..+ |..++-+....|+.+.|...++.+....+. +..+...-.-.+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence            4668888888888775   34 4556543 455666777889999999999999887754 3333333344456789999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      +|.++++.+++.+ |-|..++--=+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999887 556777776666777788888999988887763 55699999999999999999999999999999


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 006437          560 DARIELDYHTSIRLTKFIFKFH---SSSSAVNQLVEMCNL  596 (645)
Q Consensus       560 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~  596 (645)
                      -..+. ++..+..+.+.+.-.|   +.+-|.+.+.+..+.
T Consensus       182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            86554 6777788888766555   455688899988854

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00064  Score=60.19  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=58.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----c
Q 006437          228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----A  303 (645)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~  303 (645)
                      ..|+..|++++|++......      +......=+..+.+..+++-|.+.+++|.+-   -+..|.+-|..++.+    .
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence            34555555665555554311      2222222233444555555666666655542   233444444444332    2


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL  354 (645)
Q Consensus       304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  354 (645)
                      +.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++.....
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            3455555666665543 3455555555555555666666666666655553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.23  E-value=6.7e-05  Score=62.51  Aligned_cols=94  Identities=17%  Similarity=0.128  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK  544 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  544 (645)
                      ...+...+...|++++|.+.++.+...+ +.+...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            3334444444455555555555444432 2244444444445545555555555555444421 2233444444444455


Q ss_pred             cCCHHHHHHHHHHHHH
Q 006437          545 ERNIKMVKRLLQDVID  560 (645)
Q Consensus       545 ~g~~~~a~~~~~~~~~  560 (645)
                      .|++++|.+.++...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.19  E-value=9.1e-05  Score=61.69  Aligned_cols=107  Identities=20%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      .....+...+...|++++|.+.++.+...++. +...+..+...+.+.|++++|...++...+.+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            44555666777888999999999888887655 77788888888999999999999999887765 55677888888889


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPPNAYTYRVM  538 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  538 (645)
                      ...|++++|...|++..+  ..|+...+..+
T Consensus        96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~  124 (135)
T TIGR02552        96 LALGEPESALKALDLAIE--ICGENPEYSEL  124 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence            999999999999998888  55765554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.17  E-value=0.00098  Score=71.36  Aligned_cols=150  Identities=8%  Similarity=0.072  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437          327 FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG  406 (645)
Q Consensus       327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g  406 (645)
                      .+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... +.++|.+++..            .+..|...+
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------------AV~~~i~~k  183 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK------------AIYRFIKKK  183 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH------------HHHHHHhhh
Confidence            34444555555555555555555555543 33344444444444444 44444444321            223366667


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN-NPAVNAHVHTAIVDRLIEAGRCHKAIQLF  485 (645)
Q Consensus       407 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  485 (645)
                      ++.++.++|.++....  |+...+               -.++.+.+... +..--..++-.+...|....+++++..++
T Consensus       184 q~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL  246 (906)
T PRK14720        184 QYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL  246 (906)
T ss_pred             cchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            8888888888887752  332222               11222222222 22223444555666777777788888888


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHH
Q 006437          486 RRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      +.+++.. +-|.....-++.+|.
T Consensus       247 K~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        247 KKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhcC-CcchhhHHHHHHHHH
Confidence            8877764 335556666666665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.11  E-value=0.00045  Score=66.69  Aligned_cols=125  Identities=18%  Similarity=0.119  Sum_probs=108.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g  546 (645)
                      ..-.+...|++++|+..++.++... |.|+..+......+.+.++.++|.+.++++..  ..|+ ....-.+..++.+.|
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence            3445667899999999999988763 56788888888999999999999999999998  6786 666778889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          547 NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ++++|..+++......+. |+..|..|..+|...|+..+|.....++...
T Consensus       389 ~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         389 KPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             ChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            999999999999887766 9999999999999999999999887777644

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.11  E-value=0.00021  Score=69.67  Aligned_cols=126  Identities=12%  Similarity=0.120  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      -....+|+..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|++++.+....  .| +...+..-..
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAE  242 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3344556677777888999999999988764  44  3445777787888888899998888763  34 6677777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .|.+.++++.|.++.+++.+..+. +..+|..|+.+|.+.|+++.|+..++.|.
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            788899999999999999886554 67789999999999999999999888876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.02  E-value=1.1e-05  Score=48.63  Aligned_cols=33  Identities=36%  Similarity=0.660  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN  531 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~  531 (645)
                      +||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777775

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=0.00048  Score=67.21  Aligned_cols=126  Identities=17%  Similarity=0.247  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      .....++..+...++++.|+.+++++.+..  |+.  ...++..+...++-.+|.+++++.+...+. +......-...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344566777778899999999999999874  553  445777787888899999999999987665 677777788889


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      .+.++++.|+++.+++.+.. |-+..+|..|..+|.+.|+++.|+..+..+.
T Consensus       245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999874 4457799999999999999999999888775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.97  E-value=0.00049  Score=57.86  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIK  549 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~  549 (645)
                      .++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+...+....|+  ......+...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            566666666666666553 222   12223344556667777777777777776441221  223444566667777777


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          550 MVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       550 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      +|+..++......  ..+..+...+++|.+.|+.++|.+.|++.
T Consensus       103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7777776543222  23556666777777777777777777654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.96  E-value=1.6e-05  Score=47.46  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP  530 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p  530 (645)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            456666666666666666666666666666655

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.95  E-value=1.7e-05  Score=47.74  Aligned_cols=33  Identities=30%  Similarity=0.616  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006437          257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN  289 (645)
Q Consensus       257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  289 (645)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            355555555555555555555555555555544

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.93  E-value=0.00067  Score=57.05  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEE  515 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~  515 (645)
                      .++...+...++.+....+...  ....-.+...+...|++++|...|+.+......|+  ....-.+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5666666666666666544421  12223345566666777777777777666541111  1233345566666777777


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      |+..++.....  ......+......+.+.|++++|...|+..
T Consensus       104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77777554321  223445556667777777777777776653

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.89  E-value=2.3e-05  Score=46.71  Aligned_cols=33  Identities=27%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006437          568 HTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIP  600 (645)
Q Consensus       568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p  600 (645)
                      .+|+.++++|.+.|+++.|.+++++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.83  E-value=0.061  Score=56.43  Aligned_cols=445  Identities=11%  Similarity=0.085  Sum_probs=246.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRI--YWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGI  174 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~  174 (645)
                      .+++..|......+.+..  |+.. |..++.+  ..+.|..++|..+++.....+.. |..+...+-..|...++.++|.
T Consensus        22 ~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            478899999888887763  4443 3444444  46889999999999988766644 8889999999999999999999


Q ss_pred             HHHhhcCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------CHHHHHHH
Q 006437          175 KVLKETQL--PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG----------RIAEAYQL  242 (645)
Q Consensus       175 ~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~  242 (645)
                      .+|++...  |+..-...+..+|.+.+++.+-.+.--+|-+. ++-+...+=.+++...+.-          -..-|.+.
T Consensus        98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            99999874  44444455566777777765544444444332 2334455555555554431          13346677


Q ss_pred             HHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006437          243 LGLMITLG-TSLSVNAWTVLIDGFRRLRRLDMAGYLWEK-MVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEG  320 (645)
Q Consensus       243 ~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  320 (645)
                      ++.+.+.+ .--+..-...-....-..|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++..+|
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            77776553 222222222333445678889999999943 3333222334444456777888899999999999998886


Q ss_pred             CCCCHhhHHHHHHHH----------------HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCcccHHH
Q 006437          321 HAPDLVFHNVLIDCL----------------SKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC---LSGRFSLLPK  381 (645)
Q Consensus       321 ~~~~~~~~~~ll~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~  381 (645)
                      .. |   |...+...                ...+..+...+...+....+   ....|-+-+.++.   .-|+.+++..
T Consensus       257 ~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~  329 (932)
T KOG2053|consen  257 ND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS  329 (932)
T ss_pred             Cc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence            43 2   22222211                11222333333333332221   1223333333333   3466665444


Q ss_pred             HH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHHcCC-----CHHHHHH
Q 006437          382 LV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-------SFVGLLRGLCGAR-----KIDEAIN  448 (645)
Q Consensus       382 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~-----~~~~a~~  448 (645)
                      .+ +..+..|-   |..=+..|...=..++-..++.......  ++..       -+...+..-...|     .-+....
T Consensus       330 ~y~~kfg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a  404 (932)
T KOG2053|consen  330 YYFKKFGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA  404 (932)
T ss_pred             HHHHHhCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence            33 55554442   2222222222223333334443333221  1111       0111111111112     1122222


Q ss_pred             HHHHHH---HcC------CCCc---------HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          449 VYQGIV---MNN------PAVN---------AHVHTAIVDRLIEAGRCH---KAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       449 ~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      ++.+..   ++|      ..|+         .-+.+.+++.+.+.++..   +|+-+++...... +-|..+--.+|+.|
T Consensus       405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY  483 (932)
T KOG2053|consen  405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY  483 (932)
T ss_pred             HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence            222211   112      1111         113456788888888765   4555555544432 33455556688899


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .-.|-+..|.++|+.+.-..+..|..-|. +.+.+...|.+..+...+....+
T Consensus       484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk  535 (932)
T KOG2053|consen  484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK  535 (932)
T ss_pred             HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence            99999999999999987655665544332 34455667788887777776553

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.72  E-value=0.00067  Score=66.49  Aligned_cols=123  Identities=16%  Similarity=0.146  Sum_probs=79.7

Q ss_pred             CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006437          423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN--NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY  500 (645)
Q Consensus       423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  500 (645)
                      .+.+...+..++..+....+++.+..++.+....  ....-..+..++++.|.+.|..+.+.++++.=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445566666666666666677777776666554  22222333457777777777777777777776667777777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437          501 TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE  545 (645)
Q Consensus       501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  545 (645)
                      |.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777777766555555666666555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.72  E-value=0.051  Score=52.29  Aligned_cols=177  Identities=14%  Similarity=0.153  Sum_probs=123.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK-YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY-RVM  538 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l  538 (645)
                      -..+|...++...+..-++.|..+|-++.+.+ +.+++..+++++.-++. |+...|..+|+--..  ..||...| .-.
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~ky  472 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKY  472 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence            34556777887788888999999999999888 67889999999987765 678889999987554  35655544 345


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHhhh-cccCC
Q 006437          539 LLSFCKERNIKMVKRLLQDVIDARIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS-DETMT  616 (645)
Q Consensus       539 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~-~~~~~  616 (645)
                      +.-+...++-+.|..+|+..+..--. --...|..+++.-..-|+...|..+-++|..  +-|...  +..+.. ..-.+
T Consensus       473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen--~~evF~Sry~ik  548 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN--LIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh--HHHHHHHHHhhh
Confidence            66668889999999999966542111 1267899999998999999999988888873  566665  333332 34444


Q ss_pred             ccccccccccccccCCCcchhhccCCCC
Q 006437          617 PVSLFDGFVPCERRAGNANHLLLNGGVG  644 (645)
Q Consensus       617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (645)
                      +..++..+-...........|-+.+|-|
T Consensus       549 ~da~~~~le~t~~~n~rE~sv~~~ggnG  576 (660)
T COG5107         549 ADAILPPLEPTYMYNEREHSVQMEGGNG  576 (660)
T ss_pred             ccccCCCCCchhhhhhhhhheeecccCC
Confidence            4444444444444444444454666665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.71  E-value=0.0015  Score=52.85  Aligned_cols=22  Identities=9%  Similarity=0.061  Sum_probs=9.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh
Q 006437          503 AIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      +..++.+.|++++|...++.+.
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHHH
Confidence            3333444444444444444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.71  E-value=0.0006  Score=66.82  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRK--GFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDG  264 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  264 (645)
                      ....++..+....+.+.+..++-.....  ....-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus        68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~  147 (429)
T PF10037_consen   68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH  147 (429)
T ss_pred             HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence            3344444444444445555555444432  11122234445555555555555555555555555555555555555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh
Q 006437          265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME  302 (645)
Q Consensus       265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  302 (645)
                      +.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus       148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            55555555555555555544444444444444444333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.71  E-value=0.00076  Score=51.76  Aligned_cols=90  Identities=13%  Similarity=0.119  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF  580 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  580 (645)
                      .+...+...|++++|...++++.+.  .| +...+..+...+...|++++|.+.++...+.... +...+..+...+...
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence            3444445555555555555555442  22 2344445555555555555555555555544332 334555555555555


Q ss_pred             CChhHHHHHHHHHH
Q 006437          581 HSSSSAVNQLVEMC  594 (645)
Q Consensus       581 g~~~~A~~~~~~m~  594 (645)
                      |++++|.+.+++..
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            66666655555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.69  E-value=0.00081  Score=51.59  Aligned_cols=94  Identities=17%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK  544 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  544 (645)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3445556666777777777777776553 3344566667777777777777777777776632 2244566677777777


Q ss_pred             cCCHHHHHHHHHHHHH
Q 006437          545 ERNIKMVKRLLQDVID  560 (645)
Q Consensus       545 ~g~~~~a~~~~~~~~~  560 (645)
                      .|+++.|...+....+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            7777777777776654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.69  E-value=0.00089  Score=55.18  Aligned_cols=89  Identities=13%  Similarity=0.059  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                      +...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|......  .| |+..+-.+..++...|
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHcC
Confidence            3334444455555555555444433 223444444444444455555555555554442  22 3444444444555555


Q ss_pred             CHHHHHHHHHHHH
Q 006437          547 NIKMVKRLLQDVI  559 (645)
Q Consensus       547 ~~~~a~~~~~~~~  559 (645)
                      +.+.|++-|+..+
T Consensus       118 ~~~~A~~aF~~Ai  130 (157)
T PRK15363        118 NVCYAIKALKAVV  130 (157)
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555554444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.68  E-value=0.0013  Score=53.20  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSI  571 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~  571 (645)
                      .++..++..+.+.|++++|.+.++++.+.  .|+    ...+..+..++.+.|+++.|...++.+....+..  ....+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            34566777888999999999999999863  343    4567778999999999999999999998754332  356788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          572 RLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       572 ~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      .+..++.+.|+.++|.+.++++.+..
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            88899999999999999999998653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.66  E-value=0.00011  Score=55.01  Aligned_cols=81  Identities=16%  Similarity=0.235  Sum_probs=43.7

Q ss_pred             cCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          510 GGRTEEAYILYSQMKHIAV-PPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|.+++++ .+.+.. +....-.++.++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            3566666666666665321 01333444466666666777777666666 222222 22333344666667777777776


Q ss_pred             HHHH
Q 006437          589 QLVE  592 (645)
Q Consensus       589 ~~~~  592 (645)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.63  E-value=8e-05  Score=43.19  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  527 (645)
                      +|++++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=0.082  Score=53.76  Aligned_cols=376  Identities=14%  Similarity=0.109  Sum_probs=165.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH----------HhcCCHhHHHHHHhhcCCCCh
Q 006437          116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL----------FKIGRVDLGIKVLKETQLPNF  185 (645)
Q Consensus       116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----------~~~g~~~~A~~~~~~~~~~~~  185 (645)
                      .|.+..|..+.......-.++.|...|-+....   +.......|-...          +--|++++|.++|-.+..+|.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence            466666766666655555666666655544321   1111111111111          113566666666655554442


Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 006437          186 LSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP----NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL  261 (645)
Q Consensus       186 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (645)
                           .+..+.+.|++-.+.++++.   -|-..    -...++.+...++....+++|.+.|..-..         -...
T Consensus       766 -----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~  828 (1189)
T KOG2041|consen  766 -----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ  828 (1189)
T ss_pred             -----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence                 23444455555444444332   11111    123455555556655566666665543221         1123


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 006437          262 IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY  341 (645)
Q Consensus       262 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  341 (645)
                      ++++.+..++++.+.+-..+     +-+......+...+...|.-++|.+.+-+.-.    |     ...+..|...+++
T Consensus       829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW  894 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence            44444444444444433333     23444555566666666666666655433211    1     1234455556666


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006437          342 DDALDVYDGLLELKLVPDSYTFCSLL-STVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD  420 (645)
Q Consensus       342 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  420 (645)
                      .+|.++-+...    -|...|.-+-- .-+...++..+                   -|..+.+.|+.-+|.+++.+|.+
T Consensus       895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~e-------------------aIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHME-------------------AIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHH-------------------HHHHhhhcccchhHHHHHHHHhH
Confidence            66665544322    12222211100 00111111111                   23345667777777777777765


Q ss_pred             C----CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437          421 K----GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD  496 (645)
Q Consensus       421 ~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  496 (645)
                      .    +.+|-..--..++.++.- .+..++.+-.+....+|...+...       +...|-.+++-++.+..-. |  ..
T Consensus       952 ~e~~K~~p~lr~KklYVL~AlLv-E~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AE 1020 (1189)
T KOG2041|consen  952 REQEKYVPYLRLKKLYVLGALLV-ENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AE 1020 (1189)
T ss_pred             HHhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HH
Confidence            3    333332222222222211 112222222222222332211110       1122223333333332221 1  13


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHI-AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      ...|-.|..--...|.++.|++..-.+.+- .+-|-...|..+.-+.+....+...-+.|-++.
T Consensus      1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            344444445555678888888765555421 255667777777665555555544444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00062  Score=61.62  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIK  549 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~  549 (645)
                      -+.+.+++.+|+..|.++++.. |-|.+.|..-..+|.+.|.++.|++-.+....  +.|. ..+|..|..+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence            3566777777887777777764 44666677777777777777777777777776  5564 457777777777778888


Q ss_pred             HHHHHHHHHHHCCCCcCHHHH
Q 006437          550 MVKRLLQDVIDARIELDYHTS  570 (645)
Q Consensus       550 ~a~~~~~~~~~~~~~~~~~~~  570 (645)
                      +|.+.|++.++.  .|+-.+|
T Consensus       167 ~A~~aykKaLel--dP~Ne~~  185 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESY  185 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHH
Confidence            777777777663  3443344

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.62  E-value=0.00095  Score=50.82  Aligned_cols=75  Identities=23%  Similarity=0.404  Sum_probs=39.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          297 IKGFMEAKMFSIAFSFLDMLESEGH-APDLVFHNVLIDCLSKMG--------SYDDALDVYDGLLELKLVPDSYTFCSLL  367 (645)
Q Consensus       297 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll  367 (645)
                      |..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ..-..+.+|++|...+++|+..||+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3334444555555555555555555 555555555555544432        1234455566666666666666666655


Q ss_pred             HHHH
Q 006437          368 STVC  371 (645)
Q Consensus       368 ~~~~  371 (645)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            5443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.62  E-value=0.0012  Score=50.27  Aligned_cols=78  Identities=18%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHhhCCCCCCHHhHH
Q 006437           88 HMISVVTRLTGRFETVRGIVGELARVGC-VIKAQTFLLFLRIYWRGE--------MYGMVLEAFDEMGRFGFTPNTFARN  158 (645)
Q Consensus        88 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  158 (645)
                      ..|.-+.. .+++...-.+|+.+++.|+ .|+..+|+.++.+.+++.        .+-..+.+|++|+..+++|+..+|+
T Consensus        30 ~~I~~~~~-~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   30 DNINSCFE-NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHh-hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            34455555 5899999999999999999 899999999999987664        3557788999999999999999999


Q ss_pred             HHHHHHHh
Q 006437          159 IVMDVLFK  166 (645)
Q Consensus       159 ~ll~~~~~  166 (645)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.61  E-value=0.0017  Score=63.72  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=57.6

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      +...|+++.|...|+++++..+. +...+..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            34456666666666666665554 45555566666666666666666666666553 33455566666666666666666


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHH
Q 006437          517 YILYSQMKHIAVPPNAYTYRVM  538 (645)
Q Consensus       517 ~~~~~~m~~~~~~p~~~~~~~l  538 (645)
                      +..|++..+  +.|+...+..+
T Consensus        90 ~~~~~~al~--l~P~~~~~~~~  109 (356)
T PLN03088         90 KAALEKGAS--LAPGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHH--hCCCCHHHHHH
Confidence            666666665  44543333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.57  E-value=0.0023  Score=62.87  Aligned_cols=101  Identities=16%  Similarity=0.086  Sum_probs=84.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  547 (645)
                      ...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+  +.| +...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence            455677899999999999999875 45688888999999999999999999999998  456 67788889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          548 IKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      +++|...+++.++.++. +......+
T Consensus        86 ~~eA~~~~~~al~l~P~-~~~~~~~l  110 (356)
T PLN03088         86 YQTAKAALEKGASLAPG-DSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            99999999999986654 44444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.56  E-value=0.0026  Score=52.51  Aligned_cols=94  Identities=7%  Similarity=-0.017  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF  578 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  578 (645)
                      .-.+..-+...|++++|.++|+-+..  +.| +..-|..|.-+|-..|++++|+..+......++. |+..+-.+..++.
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L  114 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence            34444555677788888888777766  455 4555666666667777888888888777776654 7777777777788


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 006437          579 KFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       579 ~~g~~~~A~~~~~~m~~~  596 (645)
                      ..|+.+.|.+-|+.....
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            888888877777766544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.55  E-value=0.00011  Score=42.55  Aligned_cols=28  Identities=18%  Similarity=0.475  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437          257 AWTVLIDGFRRLRRLDMAGYLWEKMVQN  284 (645)
Q Consensus       257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  284 (645)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.51  E-value=0.0023  Score=60.49  Aligned_cols=129  Identities=14%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE-AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      +|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|...+.-+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34445555555555555555555554322 2233333333333222 33444455555555543 334455555555555


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPPNA---YTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ...|+.+.|..+|++.... +.++.   ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555442 22211   2444444444555555555555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0067  Score=55.47  Aligned_cols=101  Identities=15%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437          494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE---RNIKMVKRLLQDVIDARIELDYHTS  570 (645)
Q Consensus       494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~  570 (645)
                      |-|...|-.|..+|...|+.+.|..-|.+..+.. .+|+..+..+..++...   .+..++..+++++.+.+.. |+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            4467777777777777777777777777776621 23556666666555333   2455677777777766554 66667


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          571 IRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       571 ~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ..|...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            77777777777777777777777753

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.47  E-value=0.0033  Score=54.45  Aligned_cols=92  Identities=11%  Similarity=-0.020  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML  539 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll  539 (645)
                      ..+..++..+...|++++|...|++.......+  ...+|..+...+...|++++|+..+++..+  +.| ...++..+.
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la  113 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence            344555555666666666666666665442111  123566666666666667777666666665  233 233444444


Q ss_pred             HHHH-------hcCCHHHHHHHHH
Q 006437          540 LSFC-------KERNIKMVKRLLQ  556 (645)
Q Consensus       540 ~~~~-------~~g~~~~a~~~~~  556 (645)
                      ..+.       ..|+++.|...++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHH
Confidence            4444       4555554444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.47  E-value=0.0021  Score=60.76  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRG-LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      .+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.-+. +...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            467778888888888999999999998643 2233334333333 33357778899999999887555 77888899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPLDV---VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF  542 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  542 (645)
                      +.+.++.+.|..+|++.+.. ++++.   ..|...+.--.+.|+.+.+..+.+++.+  ..|+...+..+.+-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence            99999999999999999865 33332   4899999988999999999999999987  566655555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.0017  Score=58.87  Aligned_cols=102  Identities=21%  Similarity=0.225  Sum_probs=81.9

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      +.+.+++++|...|.+.+...+. |...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence            45678888888888888887766 77777778888999999999988888888764 23467889999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437          517 YILYSQMKHIAVPPNAYTYRVMLLSF  542 (645)
Q Consensus       517 ~~~~~~m~~~~~~p~~~~~~~ll~~~  542 (645)
                      ++.|++.++  +.|+..+|..=+...
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            999999888  788777776555444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.43  E-value=0.0054  Score=53.35  Aligned_cols=85  Identities=12%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+  ..| +...+..+..
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~  114 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence            344455555555666666666655554321111  23455555555555555555555555554  233 3334444444


Q ss_pred             HHHhcCCHHH
Q 006437          541 SFCKERNIKM  550 (645)
Q Consensus       541 ~~~~~g~~~~  550 (645)
                      .+...|+...
T Consensus       115 ~~~~~g~~~~  124 (172)
T PRK02603        115 IYHKRGEKAE  124 (172)
T ss_pred             HHHHcCChHh
Confidence            4544444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.42  E-value=0.014  Score=60.02  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      ...|..+.......|++++|...++++.+  +.|+...|..+...+...|+.++|.+.++++...+
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34444444444445555555555555555  33555555555555555555555555555555533

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.40  E-value=0.026  Score=53.58  Aligned_cols=86  Identities=16%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----Chh-chHHHHHHHHh
Q 006437          234 GRIAEAYQLLGLMITL----GTSL-SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSP-----NVV-TYTSLIKGFME  302 (645)
Q Consensus       234 ~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~  302 (645)
                      |+++.|.+.|+...+.    +... -..++..+...+.+.|++++|.++|+++...-...     +.. .+...+-++..
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            4555555555554421    1000 12244455556666666666666666665432111     111 12222334445


Q ss_pred             cCChhHHHHHHHHHHhC
Q 006437          303 AKMFSIAFSFLDMLESE  319 (645)
Q Consensus       303 ~~~~~~a~~~~~~~~~~  319 (645)
                      .|+...|...+++....
T Consensus       209 ~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  209 MGDYVAARKALERYCSQ  225 (282)
T ss_dssp             TT-HHHHHHHHHHHGTT
T ss_pred             cCCHHHHHHHHHHHHhh
Confidence            56666666666665543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.39  E-value=0.00042  Score=51.82  Aligned_cols=79  Identities=15%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      |+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ .+  ..| +......+..+|.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4445555555555443210 1222333345555555555555555554 21  122 12333333444555555555555


Q ss_pred             HHHH
Q 006437          554 LLQD  557 (645)
Q Consensus       554 ~~~~  557 (645)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.33  E-value=0.0091  Score=51.93  Aligned_cols=92  Identities=11%  Similarity=0.002  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIK--AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      ....+..+...+.. .|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.. +.+...+..
T Consensus        34 ~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence            45556666677777 7999999999998876543222  3577788888889999999999999888753 335666677


Q ss_pred             HHHHHHhcCCHhHHHH
Q 006437          160 VMDVLFKIGRVDLGIK  175 (645)
Q Consensus       160 ll~~~~~~g~~~~A~~  175 (645)
                      +..++...|+...+..
T Consensus       112 lg~~~~~~g~~~~a~~  127 (172)
T PRK02603        112 IAVIYHKRGEKAEEAG  127 (172)
T ss_pred             HHHHHHHcCChHhHhh
Confidence            7777777776544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.33  E-value=0.03  Score=46.98  Aligned_cols=125  Identities=11%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHH
Q 006437          460 VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP---NAYTYR  536 (645)
Q Consensus       460 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~  536 (645)
                      |+....-.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..  |   ++.+.-
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence            34444445666666666666666666666544344456666666666666666666666666665522  3   233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .+.+.+...|.+..|..-|+...+.-+  ++..-......+.+.|+.++|..
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHH
Confidence            555666666666666666666665433  33333334455666665555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.31  E-value=0.11  Score=47.72  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=37.0

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 006437           89 MISVVTRLTGRFETVRGIVGELARVGCVIKAQT---FLLFLRIYWRGEMYGMVLEAFDEMGRFG  149 (645)
Q Consensus        89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~  149 (645)
                      ....+.. .|+++.|.+.|+.+..... -+...   ...+..++.+.+++++|...+++..+..
T Consensus        38 ~A~~~~~-~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         38 TAQQKLQ-DGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3333444 5778888888888776532 12222   2345567777788888888888777553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.056  Score=51.51  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=24.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437          265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD  314 (645)
Q Consensus       265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  314 (645)
                      +.+..++..|+..+....+.. +-+..-|..-...+...+++++|.--.+
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar  107 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDAR  107 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchh
Confidence            444555556666666555543 2233344444444555555555554433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.28  Score=50.16  Aligned_cols=172  Identities=13%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             CCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-CCChhhHHHH----------HHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437          151 TPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-LPNFLSFNIA----------LCNLCKLNDVSNVKDVIGMMVRKGFYPN  219 (645)
Q Consensus       151 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l----------l~~~~~~g~~~~a~~~~~~m~~~~~~p~  219 (645)
                      .|.+..|..|.......-.++-|+..|-+.. -+....-..+          ...-+--|++++|.+++-+|-+++    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            6788888888877777777777777665432 1111100000          111122466666666666654432    


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS----VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS  295 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  295 (645)
                           ..+..+.+.|++-.+.++++.   -|-..|    ...|+.+.+.++....+++|.+.|..-..         -..
T Consensus       765 -----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~  827 (1189)
T KOG2041|consen  765 -----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN  827 (1189)
T ss_pred             -----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence                 234445555666555444432   111111    23566666666666666666666654321         112


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 006437          296 LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVY  348 (645)
Q Consensus       296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  348 (645)
                      .+.++.+..++++-+.+-+.+.+     +....-.+..++.+.|.-++|.+.|
T Consensus       828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence            34555555555554444443332     4444555666666667666666655

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.26  E-value=0.0064  Score=52.75  Aligned_cols=104  Identities=16%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 006437          218 PNVRMFEILLNCFCKM-----GRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT  292 (645)
Q Consensus       218 p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  292 (645)
                      -+-.+|..+++.+.+.     |.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--         
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------  113 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------  113 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence            3555666666666543     5566666666667777777777777777766543 2211 0011111100         


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437          293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS  340 (645)
Q Consensus       293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  340 (645)
                              -.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus       114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                    0012344566666777777777777777766666655543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.02  Score=52.47  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 006437          450 YQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHI  526 (645)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~  526 (645)
                      ++.-...++. |..-|-.|...|...|+.+.|..-|.+..+.. ++|+..+..+..++....   ...++..+++++.. 
T Consensus       145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-  221 (287)
T COG4235         145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-  221 (287)
T ss_pred             HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence            3444555666 88889999999999999999999999888764 567777777777766433   46678889999988 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          527 AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       527 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                       ..| |..+...|...+...|++.+|...|+.|.+....
T Consensus       222 -~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         222 -LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             -cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence             445 6777888888889999999999999999886543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.24  E-value=0.21  Score=47.88  Aligned_cols=108  Identities=13%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC
Q 006437          362 TFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR  441 (645)
Q Consensus       362 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  441 (645)
                      +.+.-+.-+...|+...|.++.....+ |+-..|-..+.+++..+++++..++-..   .   -++.-|..++.+|.+.|
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG  251 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence            444445555666777777777666554 6777777778888888888776665432   1   13466777778887788


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437          442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFR  486 (645)
Q Consensus       442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  486 (645)
                      +..+|..+...+     .     +..-+..|.++|++.+|.+.--
T Consensus       252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence            877777776652     1     2445667777777777766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.21  E-value=0.011  Score=51.16  Aligned_cols=81  Identities=10%  Similarity=-0.115  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437           83 VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVI--KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV  160 (645)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (645)
                      ...|..+...+.. .|++++|...|++.......+  ...++..+...+...|++++|+..++...+.. +.....++.+
T Consensus        35 a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         35 AFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            4455555555555 677888887777776553222  22466667777777778888877777777542 3334555555


Q ss_pred             HHHHH
Q 006437          161 MDVLF  165 (645)
Q Consensus       161 l~~~~  165 (645)
                      ..++.
T Consensus       113 a~i~~  117 (168)
T CHL00033        113 AVICH  117 (168)
T ss_pred             HHHHH
Confidence            55555

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.21  E-value=0.031  Score=57.55  Aligned_cols=138  Identities=11%  Similarity=0.051  Sum_probs=89.0

Q ss_pred             CcHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhhC
Q 006437          460 VNAHVHTAIVDRLIE--A---GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG--------GRTEEAYILYSQMKHI  526 (645)
Q Consensus       460 ~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~  526 (645)
                      .+...|...+.+...  .   +..+.|..+|+++++.. |-+...|..+..++...        ++...+.+..++....
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            344555555444322  1   22556666677666653 22244444443333221        1233444444444332


Q ss_pred             C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437          527 A-VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE  602 (645)
Q Consensus       527 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~  602 (645)
                      . ...++..+..+.-.....|++++|...++++.+.+  |+...|..++.++...|+.++|.+.+++...  +.|..
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~  486 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE  486 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence            1 23356778877777778899999999999999976  5788999999999999999999999999885  45543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.17  E-value=0.0019  Score=45.39  Aligned_cols=55  Identities=25%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          470 DRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ..+.+.|++++|.+.|+++++.. |-+...+..+..++.+.|++++|...|+++.+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555555554443 22344444555555555555555555555444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.4  Score=49.58  Aligned_cols=341  Identities=13%  Similarity=0.085  Sum_probs=182.2

Q ss_pred             HcCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcCC-
Q 006437          112 RVGCVIKAQTFLL-----FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQL-  182 (645)
Q Consensus       112 ~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~-  182 (645)
                      +.|++.+-.-|..     +|..+...+.+..|+++-..+...-..- ..+|.....-+.+..+   -+.+..+-+++.. 
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            4566666655543     4667777888899999888776321111 5667777777776533   2333334444444 


Q ss_pred             -CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 006437          183 -PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFY----PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA  257 (645)
Q Consensus       183 -~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  257 (645)
                       ....+|..+.+--...|+.+-|..+++.=...+-+    .+..-+...+.-+...|+.+-...++-.+...   .+...
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~  580 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS  580 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence             45567888877777889988888887653322211    12233455566667777777777776666542   12222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHH-HHHHH----hCCCCCCHhhHHHHH
Q 006437          258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF-LDMLE----SEGHAPDLVFHNVLI  332 (645)
Q Consensus       258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~ll  332 (645)
                      |...      ..+...|..+|.+..+..   |..+   +-..|-...+...+-.+ ++...    ..|..|+.   ....
T Consensus       581 l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a  645 (829)
T KOG2280|consen  581 LFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAA  645 (829)
T ss_pred             HHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHH
Confidence            2211      123344555555544321   1111   11111111222211111 11100    11222222   2223


Q ss_pred             HHHHhcCCH---HH-------HHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHH
Q 006437          333 DCLSKMGSY---DD-------ALDVYDGLLE-LKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSY  401 (645)
Q Consensus       333 ~~~~~~~~~---~~-------a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~  401 (645)
                      ..+.+....   ++       -.++.+.+.. .|..-..-+.+--+.-+...|+...|.++-.+.. -||-..|-.-+.+
T Consensus       646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~a  724 (829)
T KOG2280|consen  646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTA  724 (829)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHH
Confidence            333333321   11       1112222221 2223333444555555666677777777766544 4566667777778


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006437          402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKA  481 (645)
Q Consensus       402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  481 (645)
                      ++..+++++-+++-+.+.      .+.-|...+.+|.+.|+.++|.+++.+...     ..    -.+.+|.+.|++.+|
T Consensus       725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eA  789 (829)
T KOG2280|consen  725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEA  789 (829)
T ss_pred             HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHH
Confidence            888888877776655443      245577778888888888888888766532     11    356778888888887


Q ss_pred             HHHHHH
Q 006437          482 IQLFRR  487 (645)
Q Consensus       482 ~~~~~~  487 (645)
                      .++--+
T Consensus       790 ad~A~~  795 (829)
T KOG2280|consen  790 ADLAAE  795 (829)
T ss_pred             HHHHHH
Confidence            766443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.13  E-value=0.29  Score=47.52  Aligned_cols=89  Identities=9%  Similarity=0.001  Sum_probs=58.8

Q ss_pred             HHHhcCCChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 006437           55 STLLNCPSDLIALSFFIWCAKQRDYFHD----VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRI--  128 (645)
Q Consensus        55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--  128 (645)
                      .+|..+++..+|-++|..+-....-.|.    -...+.++++|..  ++.+.....+....+..  | ...|..+..+  
T Consensus        14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl--~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~   88 (549)
T PF07079_consen   14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL--NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV   88 (549)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH--hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence            5677889999999999887665432222    2234567777777  56888888777776653  2 2234444443  


Q ss_pred             HHhcCChHHHHHHHHHHhhC
Q 006437          129 YWRGEMYGMVLEAFDEMGRF  148 (645)
Q Consensus       129 ~~~~~~~~~a~~~~~~~~~~  148 (645)
                      +.+.+.+.+|.+.+..-...
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~  108 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQ  108 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhh
Confidence            35778889998888776543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.13  E-value=0.0013  Score=46.19  Aligned_cols=54  Identities=15%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ..+.+.|++++|++.|+++.+.  .| +...+..+..++...|++++|...++++++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444445555555555555442  23 334444444444555555555555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.11  E-value=0.0019  Score=45.95  Aligned_cols=50  Identities=22%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      .|++++|.++|+++.... |-+...+..+..+|.+.|++++|.++++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444444444332 22344444444444444444444444444443

...

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.09  E-value=0.0097  Score=51.65  Aligned_cols=88  Identities=11%  Similarity=0.320  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHH
Q 006437           82 DVQSFDHMISVVTRL----TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE----------------MYGMVLEA  141 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~~  141 (645)
                      +-.+|..++..+.+.    .|..+-....+..|.+.|+.-|..+|+.|+..+=+..                +-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            777788888777752    5778888899999999999999999999998775422                45678999


Q ss_pred             HHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437          142 FDEMGRFGFTPNTFARNIVMDVLFKIGR  169 (645)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~  169 (645)
                      +++|...|+-||..++..|++.+.+.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            9999999999999999999999966553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.08  E-value=0.072  Score=50.63  Aligned_cols=92  Identities=16%  Similarity=0.080  Sum_probs=45.1

Q ss_pred             HHHHHcC-CCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hHH
Q 006437          434 LRGLCGA-RKIDEAINVYQGIVMNNP---AV--NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VV-SYT  501 (645)
Q Consensus       434 l~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~  501 (645)
                      ...|... |+++.|.+.|++......   .+  -...+..+...+.+.|++++|.++|+++.......+     +. .|-
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            3345555 677777777776554310   11  122334456666667777777777766655422111     11 122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ..+-++...|+...|...+++...
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            223344455666666666666654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.05  E-value=0.0024  Score=45.51  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER-NIKMVKRLLQDVI  559 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~  559 (645)
                      .|..+...+...|++++|+..|++..+  +.| +...|..+..++...| ++++|.+.+++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            344444444444444444444444444  223 2334444444444444 3444444444443

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.03  E-value=0.0027  Score=45.21  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG-RTEEAYILYSQMKH  525 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~  525 (645)
                      +...|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            45567777777888888888888888887765 445777788888888888 68888888887765

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.01  E-value=0.38  Score=46.75  Aligned_cols=198  Identities=13%  Similarity=0.087  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH-------HHHHHHHc----CCCHHHHHHHHHHHHHcCCCC
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV-------GLLRGLCG----ARKIDEAINVYQGIVMNNPAV  460 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~  460 (645)
                      ..++..++....+.++...|.+.+.-+.-.  .|+...-.       .+.+..+.    .-+...-..+|+......++.
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            346777888888888888888888776653  33332111       11222221    123344455565555544442


Q ss_pred             cHHHH--HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHhc---CCHHHHHHHHHHHhhCCCCC
Q 006437          461 NAHVH--TAIVDRLIEAGR-CHKAIQLFRRAIVEKYPLDVVSYTVAI----RGLLEG---GRTEEAYILYSQMKHIAVPP  530 (645)
Q Consensus       461 ~~~~~--~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~m~~~~~~p  530 (645)
                      ..-+.  ---..-+.+.|. -++|+.+++.+.+-. +-|..+-|.+.    .+|.+.   ....+-+.+-+-+.+.|++|
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            21111  112334555565 788999999887642 22444333332    223222   22333344444455778877


Q ss_pred             ----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          531 ----NAYTYRVMLLSF--CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       531 ----~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                          +...-+.|.+|=  ...|++.++.-.-.-+.+  +.|++.+|..++-++....++++|...+.++.
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence                344555565543  578999988766555544  67899999999999999999999999998874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.037  Score=49.26  Aligned_cols=163  Identities=9%  Similarity=-0.036  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHhhcCCCC----------hhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH
Q 006437          156 ARNIVMDVLFKIGRVDLGIKVLKETQLPN----------FLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEI  225 (645)
Q Consensus       156 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  225 (645)
                      -++.|.+.+.-..-+++.+..++.-..|.          ...-+.++..+...|.+.-..+++.+.++...+.++.....
T Consensus       138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~  217 (366)
T KOG2796|consen  138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG  217 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence            35666666665555555555555433211          12334555555666667667777777766655556666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHH
Q 006437          226 LLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL-----IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF  300 (645)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  300 (645)
                      +.+.-.+.|+.+.|...|+...+..-..|..+++.+     ...|.-.+++..|...++++...+ +.|...-|.=.-+.
T Consensus       218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcl  296 (366)
T KOG2796|consen  218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCL  296 (366)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHH
Confidence            677777777777777777766554333333333332     233445566666666666665432 12333333333333


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 006437          301 MEAKMFSIAFSFLDMLESE  319 (645)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~  319 (645)
                      .-.|+...|++.++.|...
T Consensus       297 lYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  297 LYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            4456666666666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.98  E-value=0.063  Score=54.02  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----------
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY----------  533 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------  533 (645)
                      +...+...+.+...+.-|-++|.+|-+.         ..++......+++.+|..+.++..+  +.||..          
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~  817 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN  817 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence            3333444444455566666666655322         2344555666677777776666554  344422          


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          534 -TYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       534 -~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                       -|.-.-.+|.++|+.++|.++++++..
T Consensus       818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  818 DRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence             133334577788888888888888764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.98  E-value=0.18  Score=42.57  Aligned_cols=135  Identities=13%  Similarity=0.057  Sum_probs=103.4

Q ss_pred             CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHH
Q 006437          423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYT  501 (645)
Q Consensus       423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~  501 (645)
                      ..|+...-..|..++...|+..+|...|++...--..-|..+.-.+.++....+++..|...++++.+.+. ..++.+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            45777777788888999999999999999887766666888888888999999999999999998877640 01344556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      .+.+.|...|+..+|+.-|+...+  ..|+...-......+.++|+.+++..-+..+.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            677888999999999999999988  66776665555566677887776665444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.96  E-value=0.037  Score=44.06  Aligned_cols=90  Identities=20%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---H-HHHHHHHHH
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---A-YTYRVMLLS  541 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~-~~~~~ll~~  541 (645)
                      ...++-..|+.++|..+|++....|....  ...+-.+...+...|++++|..++++....  .|+   . .....+.-+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence            34445556666666666666666553332  234444555566666666666666665542  232   1 112222334


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 006437          542 FCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~  559 (645)
                      +...|+.++|.+.+-...
T Consensus        85 L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            455566666666554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.94  E-value=0.051  Score=45.73  Aligned_cols=69  Identities=29%  Similarity=0.557  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK-----HIAVPPNAYT  534 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~  534 (645)
                      ...++..+...|++++|..+.+.+.... |.|...|..+|.+|...|+..+|.+.|+++.     +.|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555556666666666666666554 4455566666666666666666666666543     3355555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.92  E-value=0.0035  Score=44.47  Aligned_cols=53  Identities=21%  Similarity=0.371  Sum_probs=37.1

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      ..|++++|.++|+.+....+. +..+...+..+|.+.|++++|.++++++....
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            456777777777777776666 66666677777777777777777777776653

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.05  Score=48.45  Aligned_cols=134  Identities=13%  Similarity=0.180  Sum_probs=82.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----
Q 006437          430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI-----  504 (645)
Q Consensus       430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----  504 (645)
                      ...++..+...+.+.-...++++.++..++.++...+.+++.-.+.|+.+.|...|++..+..-..|...++.++     
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            344555556666777777777777777666677777777777777777777777777665443233333333332     


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                      ..|.-.+++.+|...+.++...+ ..|+...+.-.-.....|+...|.+.++.|.+..+.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            23445567777777777776533 224444444444445567777788777777765443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.76  E-value=0.047  Score=43.47  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCH
Q 006437           97 TGRFETVRGIVGELARVGCVIK--AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPN----TFARNIVMDVLFKIGRV  170 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~  170 (645)
                      .|+.++|+.+|++....|....  ...+..+...+...|++++|..++++.....  |+    ......+..++...|+.
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~   91 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRP   91 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCH
Confidence            5777777777777777664332  2344555566667777777777777766532  22    22222233345556666


Q ss_pred             hHHHHHHhhcCCCChhhHHHHHHHH
Q 006437          171 DLGIKVLKETQLPNFLSFNIALCNL  195 (645)
Q Consensus       171 ~~A~~~~~~~~~~~~~~~~~ll~~~  195 (645)
                      ++|++.+-....++...|..-|..|
T Consensus        92 ~eAl~~~l~~la~~~~~y~ra~~~y  116 (120)
T PF12688_consen   92 KEALEWLLEALAETLPRYRRAIRFY  116 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666544333333444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.76  E-value=0.12  Score=43.35  Aligned_cols=57  Identities=12%  Similarity=0.044  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      ..++..+...|++++|..+.+.+....+- |...|..++.+|.+.|+..+|.+.|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            33444444555555555555555554332 4555555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.70  E-value=0.49  Score=43.58  Aligned_cols=176  Identities=11%  Similarity=0.051  Sum_probs=104.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YS---FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      ....+.+.|++++|++.|+++...-  |+. ..   .-.+..++.+.++++.|...+++.++..|.....-+...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence            4445667899999999999988753  332 22   23456677888999999999999988876544433433333332


Q ss_pred             h--cC---------------C---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437          474 E--AG---------------R---CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       474 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  533 (645)
                      .  .+               +   ..+|...|+++++.-  |+.             .-..+|...+..+.+   .--..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~ya~~A~~rl~~l~~---~la~~  177 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QYTTDATKRLVFLKD---RLAKY  177 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hhHHHHHHHHHHHHH---HHHHH
Confidence            1  11               1   233445555555442  322             223334333333321   00011


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVIDA--RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .+ .+.+-|.+.|.+..|..-++.+++.  +..........++.+|.+.|..++|.+....+.
T Consensus       178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            11 4456677888888888888888763  223345666777788888888888887766553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.70  E-value=0.34  Score=49.12  Aligned_cols=210  Identities=15%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437          140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN  219 (645)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  219 (645)
                      --++++.+.|-.|+...   +...++-.|++.+|-++|.+                  .|.-..|+++|..|.--     
T Consensus       621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-----  674 (1081)
T KOG1538|consen  621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-----  674 (1081)
T ss_pred             HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-----
Confidence            34556677776677643   44566778888898888875                  45555555555544321     


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CcCHHhHHHHHHHHHhcCCHHHHHHH-------------HHHHHH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLMITL--GT-SLSVNAWTVLIDGFRRLRRLDMAGYL-------------WEKMVQ  283 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~~~~~~a~~~-------------~~~m~~  283 (645)
                           -...-+...|..++-..+.+.-.+.  +. +|.     +....+...|+.++|..+             -.++..
T Consensus       675 -----D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~  744 (1081)
T KOG1538|consen  675 -----DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK  744 (1081)
T ss_pred             -----HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence                 0122233333333322222211110  00 111     122333344444444433             322221


Q ss_pred             cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437          284 NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF  363 (645)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  363 (645)
                          .+..+...+..-+.+...+..|-++|..|-+.         ..++......+++.+|..+-+...+  +.||+  |
T Consensus       745 ----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y  807 (1081)
T KOG1538|consen  745 ----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--Y  807 (1081)
T ss_pred             ----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--c
Confidence                13334444444445556666777777666432         3455666777778887777666544  23332  2


Q ss_pred             HHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006437          364 CSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK  421 (645)
Q Consensus       364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  421 (645)
                      -....-++...++++|.+                   +|.+.|+-.+|.++++++...
T Consensus       808 ~pyaqwLAE~DrFeEAqk-------------------AfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  808 MPYAQWLAENDRFEEAQK-------------------AFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             chHHHHhhhhhhHHHHHH-------------------HHHHhcchHHHHHHHHHhhhh
Confidence            223333344444444443                   456778888888888887654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.64  E-value=0.34  Score=46.96  Aligned_cols=165  Identities=13%  Similarity=0.059  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006437          430 FVGLLRGLCGARKIDEAINVYQGIVMNN---PAVNAHVHTAIVDRLIE---AGRCHKAIQLFRRAIVEKYPLDVVSYTVA  503 (645)
Q Consensus       430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  503 (645)
                      ...++-+|....+++...++.+.+...-   +.-...+-....-++.+   .|+.++|++++..++.....+++.+|..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3345556777778888888877776541   11122222334445556   78888888888886655556777788777


Q ss_pred             HHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH----HHHHHCCC---
Q 006437          504 IRGLLE---------GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN----IKMVKRLL----QDVIDARI---  563 (645)
Q Consensus       504 ~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----~~~a~~~~----~~~~~~~~---  563 (645)
                      .+.|..         ....++|+..|.+.-+  +.||...=-.++..+...|.    -.+..++-    ..+.+.|.   
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            776642         1246778888888766  44654432222222222332    11222222    11222332   


Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          564 ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       564 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ..|-.-+.+++.+..-.|+.++|.+..++|...
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            224455667788888899999999999999854

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.62  E-value=0.045  Score=50.78  Aligned_cols=59  Identities=14%  Similarity=0.081  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +-.+..+|...|++++|...|+.+.+.  .|+    ...+..+...+...|+.++|.++++.+++
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444444444444444444444431  121    22233333334444444444444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.61  E-value=0.046  Score=50.72  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             HcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCH
Q 006437          438 CGARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRT  513 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~  513 (645)
                      .+.|++++|...|+.+++..+...  ...+-.+..+|...|++++|...|+.+.+..  .+.....+-.+...+...|+.
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            444556666666666655544321  2344556666666666666666666666432  011233444445556666777


Q ss_pred             HHHHHHHHHHhhCCCCCCH
Q 006437          514 EEAYILYSQMKHIAVPPNA  532 (645)
Q Consensus       514 ~~A~~~~~~m~~~~~~p~~  532 (645)
                      ++|..+|+++.+  ..|+.
T Consensus       234 ~~A~~~~~~vi~--~yP~s  250 (263)
T PRK10803        234 AKAKAVYQQVIK--KYPGT  250 (263)
T ss_pred             HHHHHHHHHHHH--HCcCC
Confidence            777777777665  34543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.61  E-value=0.015  Score=41.92  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=25.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      .|.+.+++++|.++++.++..+ |.++..|.....++.+.|++++|.+.+++..+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3444444444444444444442 22344444444444455555555555554444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.57  E-value=0.022  Score=54.00  Aligned_cols=133  Identities=8%  Similarity=-0.072  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCC-CCHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAI----VEKYP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMK----HIAVP-PNAY  533 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~  533 (645)
                      .|..|.+.|.-.|+++.|....+.-+    +-|-+ .....+..+.++++-.|+++.|.+.|+.-.    +.|-+ ....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34445555566678888877654322    11211 124567778888888899999988888743    33322 2345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID----A-RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      +..+|..+|.-..++++|+.++.+-..    . +..-....+.+|..++...|..++|+.+.+.-++.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            677788888888889999888775432    1 11224677888999999999999988887766544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.48  E-value=0.51  Score=42.22  Aligned_cols=171  Identities=17%  Similarity=0.101  Sum_probs=95.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437          398 LLSYFCKAGFPNQAVKLYNTMLDKGFT--PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA  475 (645)
Q Consensus       398 li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  475 (645)
                      ....+...|++.+|+..|+.+......  -.....-.++.++.+.|+++.|...++.+++..|.....-+...+.+.+..
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            344567789999999999998875211  112345567778888999999999999998887654433333222222211


Q ss_pred             -------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437          476 -------------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF  542 (645)
Q Consensus       476 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  542 (645)
                                   +...+|...|+.++               .-|-......+|...+..+.+.   --.. -..+.+-|
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y  151 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFY  151 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHH
Confidence                         11233444444443               3333344445555444444320   0011 12245667


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChhHHH
Q 006437          543 CKERNIKMVKRLLQDVIDARIE--LDYHTSIRLTKFIFKFHSSSSAV  587 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  587 (645)
                      .+.|.+..|..-++.+++.=+.  ........++.+|.+.|..+.|.
T Consensus       152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8888888888888888764222  12345667777888888777443

>PRK15331 chaperone protein SicA; Provisional

Probab=96.47  E-value=0.099  Score=43.63  Aligned_cols=85  Identities=11%  Similarity=0.017  Sum_probs=42.1

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      ..|++++|..+|+-+.-.+ .-|..-+..|..+|-..+++++|...+......+.. |+..+-....+|...|+.+.|.+
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence            4555555555555544421 113334444444444555555555555555443332 44444445555555555555555


Q ss_pred             HHHHHHH
Q 006437          589 QLVEMCN  595 (645)
Q Consensus       589 ~~~~m~~  595 (645)
                      .|+...+
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            5555543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.09  Score=50.31  Aligned_cols=98  Identities=10%  Similarity=0.019  Sum_probs=81.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      ..+++.+..+|.+.+++.+|++...+.++.+ ++|...+.-=..+|...|+++.|+..|+++++..+. |...-+.|+.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l  334 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL  334 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            4467788889999999999999999999865 568888888899999999999999999999997665 67778888887


Q ss_pred             HHhcCChhHH-HHHHHHHHHC
Q 006437          577 IFKFHSSSSA-VNQLVEMCNL  596 (645)
Q Consensus       577 ~~~~g~~~~A-~~~~~~m~~~  596 (645)
                      -.+..+..+. .++|..|...
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            7776666654 6788888644

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.41  E-value=0.014  Score=42.01  Aligned_cols=53  Identities=11%  Similarity=0.071  Sum_probs=24.9

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .|.+.+++++|.+.++.+..  +.| +...+......+...|++++|.+.++...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34444555555555555544  223 333444444444455555555555555444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.34  E-value=0.35  Score=38.32  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      ....+..+...|+-+.-.+++.++... -.+++..+..+..||.+.|+..++.+++.++-+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            344445555555555555555555432 245555555666666666666666666665555554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=1.1  Score=43.21  Aligned_cols=88  Identities=11%  Similarity=0.069  Sum_probs=40.2

Q ss_pred             HHcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437          403 CKAGFPNQAVKLYNTMLDK---GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (645)
                      .+.|++..|.+.|.+.+..   ...|+...|.....+..+.|+..+|+.--+...+.... -+..+..-..++...++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHH
Confidence            3455555666655555442   12333334444444445556666655555444332211 1111112223333445566


Q ss_pred             HHHHHHHHHHHC
Q 006437          480 KAIQLFRRAIVE  491 (645)
Q Consensus       480 ~a~~~~~~~~~~  491 (645)
                      +|.+-|++..+.
T Consensus       339 ~AV~d~~~a~q~  350 (486)
T KOG0550|consen  339 EAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHhh
Confidence            666666655543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.23  E-value=0.12  Score=41.75  Aligned_cols=100  Identities=12%  Similarity=0.082  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      ..++..++.++++.|+++....+++..-..+  ++..         ...+.         --......|+..++.+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            4456667777777777777766665543221  1110         00000         11233477899999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcC
Q 006437          542 FCKERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g  581 (645)
                      |+..|++..|.++++.+.+ .+++.+..+|..|++-....-
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999874 678888999999987655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.22  E-value=0.078  Score=51.97  Aligned_cols=64  Identities=14%  Similarity=0.024  Sum_probs=51.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV----VSYTVAIRGLLEGGRTEEAYILYSQMKHI  526 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  526 (645)
                      +...++.+..+|.+.|++++|...|++.++.+  |+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56677888888888888888888888888764  542    35888888888888888888888888774

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.15  E-value=1.3  Score=42.34  Aligned_cols=47  Identities=9%  Similarity=0.073  Sum_probs=22.5

Q ss_pred             hcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437          166 KIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMV  212 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  212 (645)
                      +.|..+.|...-+...   +.-...+...+...|..|+++.|+++++.-+
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            3455555555444332   1122344555555555555555555555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.07  E-value=0.018  Score=42.18  Aligned_cols=62  Identities=10%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LD-YHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .+++.+...|...|++++|+..+++..+.    |.. |+ ..++..+..++...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555555555566666666555555431    111 11 4455666666666666666666666554

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.98  E-value=1.1  Score=40.07  Aligned_cols=52  Identities=15%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             cCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 006437           97 TGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF  148 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  148 (645)
                      .|++.+|...|+.+.....  +-.......++.++.+.|+++.|...++..++.
T Consensus        18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4778888888877766531  223345556677777778888887777777654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.98  E-value=1.4  Score=42.76  Aligned_cols=33  Identities=3%  Similarity=0.054  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          530 PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       530 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .+..-+.+++.++.-.|++++|.+..++|.+..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            466677777888888888888888888887653

>PRK15331 chaperone protein SicA; Provisional

Probab=95.89  E-value=0.7  Score=38.71  Aligned_cols=90  Identities=11%  Similarity=-0.044  Sum_probs=65.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  548 (645)
                      ..-+...|++++|..+|+-+.-.+ +-|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            344556788888888888777654 3356667777777777888888888888766533 23555566677788888888


Q ss_pred             HHHHHHHHHHHH
Q 006437          549 KMVKRLLQDVID  560 (645)
Q Consensus       549 ~~a~~~~~~~~~  560 (645)
                      +.|+..|+..++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887776

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.78  E-value=0.74  Score=36.57  Aligned_cols=140  Identities=13%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006437          438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAY  517 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  517 (645)
                      .-.|.+++..++..+...+.   +..-+|.++--....-+-+-..++++.+-+   --|..          ..|+.....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence            34678888888888777654   344445444444443333334444443322   22322          234444444


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      ..+-.+     ..++.-+...+.....+|+-+.-.++...+.+ +-++++.....+..+|.+.|+..++.+++.++.+.|
T Consensus        77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            443332     23456667778888999999999999988876 446789999999999999999999999999999998


Q ss_pred             CC
Q 006437          598 LI  599 (645)
Q Consensus       598 ~~  599 (645)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            64

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.73  E-value=0.84  Score=46.79  Aligned_cols=116  Identities=9%  Similarity=-0.012  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAI-RGLLEGGRTEEAYILYSQMKHIA--V-PPNAYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~ll~~~~~~g~~~~a  551 (645)
                      ...+.|.++++.+.++-  |+...|...- +.+...|++++|++.|++.....  . +.....+.-+...+...+++++|
T Consensus       247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            34566666666666542  4544443332 33445566666666666544211  1 11233444555666666667777


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCCh-------hHHHHHHHHHH
Q 006437          552 KRLLQDVIDARIELDYHTSIRLT-KFIFKFHSS-------SSAVNQLVEMC  594 (645)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~  594 (645)
                      .+.+..+.+.+-- ...+|..+. .++...|+.       ++|.+++++..
T Consensus       325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            6666666654322 233332222 334455555       66666666553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.31  Score=45.30  Aligned_cols=154  Identities=14%  Similarity=0.041  Sum_probs=108.8

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHH--HHHHHHHHhcCCHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN-NPAVNAHVH--TAIVDRLIEAGRCHK  480 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~~~  480 (645)
                      ..|+..+|-..|+++.+. .+.|...+...-.+|...|+...-...+++++.. +......+|  ..+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            478888888888888876 5667777777888899999999988888888876 444433333  345556678899999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA---VPPNAYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       481 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      |++.-++..+.+ +.|.-.-.+....+--.|++.++.++..+-...-   --.-..-|....-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            999999888775 4455555667777777889999988866654321   111123344445555666889999999985


Q ss_pred             HH
Q 006437          558 VI  559 (645)
Q Consensus       558 ~~  559 (645)
                      =+
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            44

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.69  E-value=2.1  Score=41.12  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437          258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK  337 (645)
Q Consensus       258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  337 (645)
                      .+..|.-+...|+...|.++-.+..    .|+..-|...+.+++..++|++-..+-..      +-.+..|..++.+|.+
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK  249 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence            3334445555666666655544443    25666666666666666666655554321      1133556666666666


Q ss_pred             cCCHHHHHHHHHH
Q 006437          338 MGSYDDALDVYDG  350 (645)
Q Consensus       338 ~~~~~~a~~~~~~  350 (645)
                      .|+..+|..+...
T Consensus       250 ~~~~~eA~~yI~k  262 (319)
T PF04840_consen  250 YGNKKEASKYIPK  262 (319)
T ss_pred             CCCHHHHHHHHHh
Confidence            6666666655544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.66  E-value=0.023  Score=41.61  Aligned_cols=63  Identities=22%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHI--AVP---PN-AYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .+|+.+...|...|++++|+..|++..+.  ...   |+ ..++..+...|...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34566666666666666666666665421  011   11 34566667777777777777777776543

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.55  E-value=0.14  Score=48.83  Aligned_cols=132  Identities=16%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCChh
Q 006437          222 MFEILLNCFCKMGRIAEAYQLLGLMI----TLGTS-LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ----NG-CSPNVV  291 (645)
Q Consensus       222 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~  291 (645)
                      .|..|...|.-.|+++.|+...+.-.    +.|-. .....+..+.++++-.|+++.|.+.|+.-..    .| -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            56667777777889999988776543    22321 1234677888899999999999998887543    22 122345


Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          292 TYTSLIKGFMEAKMFSIAFSFLDMLESE-----GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE  353 (645)
Q Consensus       292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  353 (645)
                      +..++...|.-..++++|+.++.+-...     ...-....+.++..++...|..++|+...+.-.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5667778888888899999887654321     1123456788899999999999999988776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=4.1  Score=43.25  Aligned_cols=148  Identities=10%  Similarity=0.082  Sum_probs=86.7

Q ss_pred             ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHH----HHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006437           49 APHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMI----SVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL  124 (645)
Q Consensus        49 ~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  124 (645)
                      +.......+..-.-+..|+.+-..-    +  .+...-..+.    +.+-+ .|++++|...|-+-...- .|     ..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~--~d~d~~~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~l-e~-----s~  402 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQ----H--LDEDTLAEIHRKYGDYLYG-KGDFDEATDQYIETIGFL-EP-----SE  402 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhc----C--CCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHcccC-Ch-----HH
Confidence            3344445555556677777765432    2  2333333333    33334 688999888776654321 11     23


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChh-hHHHHHHHHHhcCCcch
Q 006437          125 FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFL-SFNIALCNLCKLNDVSN  203 (645)
Q Consensus       125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~  203 (645)
                      +++-|........-...++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+........ -....+..+.+.+-.++
T Consensus       403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence            455666666777777788888888854 4444467888999988888887777765521111 24455555555555555


Q ss_pred             HHHHHHH
Q 006437          204 VKDVIGM  210 (645)
Q Consensus       204 a~~~~~~  210 (645)
                      |..+-..
T Consensus       482 a~~LA~k  488 (933)
T KOG2114|consen  482 AELLATK  488 (933)
T ss_pred             HHHHHHH
Confidence            5554433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.45  E-value=0.99  Score=46.29  Aligned_cols=163  Identities=16%  Similarity=0.097  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----hhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKG-FTPDN-----YSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHV  464 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  464 (645)
                      ...+++...-.|+-+.+++.+.+-.+.+ +.-..     -.|...+..++.    ....+.|.++++.+....|+ ....
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lf  269 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALF  269 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHH
Confidence            3445555666788888888887765532 22111     134444444433    45788899999999887765 3333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEK--YP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      .-.-.+.+...|++++|.+.|++.....  .+ .....+--+...+.-.+++++|...|..+.+.. .-+..+|..+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            3345667778899999999999766421  11 123345556667788899999999999998743 3355566665555


Q ss_pred             H-HhcCCH-------HHHHHHHHHHH
Q 006437          542 F-CKERNI-------KMVKRLLQDVI  559 (645)
Q Consensus       542 ~-~~~g~~-------~~a~~~~~~~~  559 (645)
                      | ...|+.       ++|.++++++-
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHH
Confidence            5 456777       78888888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.39  E-value=0.25  Score=39.80  Aligned_cols=49  Identities=14%  Similarity=0.065  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHH
Q 006437          458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE-KYPLDVVSYTVAIRG  506 (645)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~  506 (645)
                      ..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3455555555555555555555555555555443 333345555555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.37  E-value=2.7  Score=40.28  Aligned_cols=254  Identities=13%  Similarity=0.055  Sum_probs=137.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhchHHHHH----HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 006437          267 RLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK----GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYD  342 (645)
Q Consensus       267 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  342 (645)
                      -.|+++.|.+-|+.|..     |..+-..=++    ...+.|..+.|..+-+..-..... -.-.....+...|..|+++
T Consensus       132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWD  205 (531)
T ss_pred             hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChH
Confidence            35666666666666664     2222211122    223445666666655555443211 2234555666677777777


Q ss_pred             HHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 006437          343 DALDVYDGLLELKL-VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYF---CKAGFPNQAVKLYNTM  418 (645)
Q Consensus       343 ~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m  418 (645)
                      .|+++++.-+...+ .++..--                              .-..|+.+-   .-..+...|...-.+.
T Consensus       206 ~AlkLvd~~~~~~vie~~~aeR------------------------------~rAvLLtAkA~s~ldadp~~Ar~~A~~a  255 (531)
T COG3898         206 GALKLVDAQRAAKVIEKDVAER------------------------------SRAVLLTAKAMSLLDADPASARDDALEA  255 (531)
T ss_pred             HHHHHHHHHHHHHhhchhhHHH------------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            77777765544221 1111100                              000111100   0112234444443333


Q ss_pred             HHCCCCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCC
Q 006437          419 LDKGFTPDNYS-FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI-QLFRRAIVEKYPLD  496 (645)
Q Consensus       419 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~  496 (645)
                      .+  +.||..- -.....++.+.|++.++-.+++.+-+..+.|++.    .+..+.+.|+..... +-.+.+...+ +.+
T Consensus       256 ~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk-~nn  328 (531)
T COG3898         256 NK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLK-PNN  328 (531)
T ss_pred             hh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcC-ccc
Confidence            33  3455332 2233456788888888888888888877766543    233344555432211 1122222222 235


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCc
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC-KERNIKMVKRLLQDVIDARIEL  565 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~  565 (645)
                      ..+.-.+..+-...|++..|..--+....  ..|....|..|.+.-. ..||-.++..++.+..+..-+|
T Consensus       329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            66666777777788888888877777766  6788888888877764 4488889988888887654333

>PRK11906 transcriptional regulator; Provisional

Probab=95.33  E-value=1.9  Score=42.82  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437          478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQ  556 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~  556 (645)
                      ..+|.++.++.++.+ +.|......+..+....++++.|..+|++...  +.|| ..+|......+.-.|+.++|.+.++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            445555555555554 34555555555555556666666666666665  4454 3445555555566666666666666


Q ss_pred             HHHH
Q 006437          557 DVID  560 (645)
Q Consensus       557 ~~~~  560 (645)
                      +..+
T Consensus       397 ~alr  400 (458)
T PRK11906        397 KSLQ  400 (458)
T ss_pred             HHhc
Confidence            6554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=2.6  Score=38.99  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=95.8

Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 006437          436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE  515 (645)
Q Consensus       436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  515 (645)
                      .....|++.+|..+|.......++ +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            446678888888888888877655 4556667888888889999998888876544211111112223334444444444


Q ss_pred             HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 006437          516 AYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID--ARIELDYHTSIRLTKFIFKFHSSSSAVNQL  590 (645)
Q Consensus       516 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  590 (645)
                      ...+-.+...   .| |...-..+...+...|+.+.|.+.+-.+.+  .+.. |...-..|++.+.-.|.-+.+...+
T Consensus       222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4444444443   45 666777778888888888888877766654  3444 6667777777777777555443333

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.16  E-value=1.6  Score=36.27  Aligned_cols=126  Identities=11%  Similarity=0.054  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437          430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE  509 (645)
Q Consensus       430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (645)
                      ...++..+...+.......+++.+...+. .+...++.++..|++.+ .++..+.++.   .   .+......++..|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            33455555556666777777776666653 46666677777776543 3333344332   1   233445556677777


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437          510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE-RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF  578 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  578 (645)
                      .+.++++.-++.++..     .....    ..+... ++++.|.++..+.      .++..|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~-----~~~Al----~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----FKDAI----VTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----HHHHH----HHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            7777777777766532     11122    222222 6777777766641      25666766666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.06  E-value=0.74  Score=46.46  Aligned_cols=154  Identities=12%  Similarity=0.134  Sum_probs=87.0

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV  176 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  176 (645)
                      +++++.+.+..+.=.-.. ..+......+++.+-+.|..+.|+++-.+-            ..-.....+.|+.+.|.++
T Consensus       274 ~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~  340 (443)
T PF04053_consen  274 RGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEI  340 (443)
T ss_dssp             TT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHH
T ss_pred             cCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHH
Confidence            466666655553110000 123555777777777778888877764432            1234556677888888777


Q ss_pred             HhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 006437          177 LKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN  256 (645)
Q Consensus       177 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  256 (645)
                      .++..  +...|..|.......|+++-|.+.|.+...         +..|+-.|.-.|+.+...++.+.....|      
T Consensus       341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------  403 (443)
T PF04053_consen  341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------  403 (443)
T ss_dssp             CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred             HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence            76654  455777777777777777777777765432         4556666777777777777766666544      


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          257 AWTVLIDGFRRLRRLDMAGYLWEK  280 (645)
Q Consensus       257 ~~~~li~~~~~~~~~~~a~~~~~~  280 (645)
                      -+|....++.-.|++++..+++.+
T Consensus       404 ~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  404 DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            244445555556676666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=5.9  Score=42.12  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLL  555 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  555 (645)
                      ++..+.+..+.+.+..+.+..-+    -++..|..++..+.+.+..+.-.++.
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v  759 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIV  759 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHH
Confidence            44455555566666655555432    15566666666666666444433333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.95  E-value=0.66  Score=45.75  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTAIVDRLIEAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  491 (645)
                      +.+...+..+..+|...|++++|...|++.++.++....  ..|..+..+|...|+.++|++.++++++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677888999999999999999999999998776332  46899999999999999999999999885

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.78  Score=42.76  Aligned_cols=150  Identities=15%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             hcCCcccHHHHHhcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHcCCCHHH
Q 006437          372 LSGRFSLLPKLVCGL--EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF----VGLLRGLCGARKIDE  445 (645)
Q Consensus       372 ~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~  445 (645)
                      -.|+..+|...++++  ..+.|...++..=.+|...|+.+.....++++... ..||...|    ..+.-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            456666655444322  23457788888888999999999999999988765 23343333    333345567899999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-D---VVSYTVAIRGLLEGGRTEEAYILYS  521 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~  521 (645)
                      |++.-++..+.+.. |.-...+..+.+--.|++.++.++..+-... ... +   ..-|=...-.+...+.++.|+++|+
T Consensus       194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            99998888877655 7777788889999999999999987764322 010 0   1112222334556689999999998


Q ss_pred             HHh
Q 006437          522 QMK  524 (645)
Q Consensus       522 ~m~  524 (645)
                      .-.
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            743

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.94  E-value=0.59  Score=36.96  Aligned_cols=91  Identities=20%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCC
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKERN  547 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~  547 (645)
                      +....|+++.|++.|.+.+..- |-....||.-..++.-.|+.++|+.-+.+..+..-.-+   ...|..-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4556677777777777666542 34566677777777777777777776666655321111   1223333344566667


Q ss_pred             HHHHHHHHHHHHHCC
Q 006437          548 IKMVKRLLQDVIDAR  562 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~  562 (645)
                      -+.|..-|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777776666666655

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.65  Score=44.71  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      ..++..+.-++.+.+++..|++.-++.+..+ ++|+...--=..+|...|+++.|...|+++++  +.|+......=+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK  333 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence            3456678889999999999999999999886 67888888888999999999999999999999  78865555544444


Q ss_pred             H-HhcCC-HHHHHHHHHHHHH
Q 006437          542 F-CKERN-IKMVKRLLQDVID  560 (645)
Q Consensus       542 ~-~~~g~-~~~a~~~~~~~~~  560 (645)
                      | .+... .+...++|..|..
T Consensus       334 l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  334 LKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            4 33333 3344677777753

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.70  E-value=0.46  Score=43.07  Aligned_cols=89  Identities=12%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 006437           81 HDVQSFDHMISVVTRL----TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE----------------MYGMVLE  140 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~  140 (645)
                      .+-.+|-+++..|...    .+..+-....++.|...|+.-|.++|..|+..+-+..                .-+-++.
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence            4778888888887752    4667777788899999999999999999998765432                2345788


Q ss_pred             HHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437          141 AFDEMGRFGFTPNTFARNIVMDVLFKIGR  169 (645)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  169 (645)
                      ++++|..+|+.||..+-..|++++.+.+-
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            99999999999999999999999977664

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.57  E-value=2.3  Score=35.29  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=67.5

Q ss_pred             CChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006437           48 LAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLR  127 (645)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  127 (645)
                      +.+..+...+...+.+.....+++++....+  .++...+.++..+++ . +.....+.++.   .   .+......+++
T Consensus         8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~-~-~~~~ll~~l~~---~---~~~yd~~~~~~   77 (140)
T smart00299        8 IDVSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK-Y-DPQKEIERLDN---K---SNHYDIEKVGK   77 (140)
T ss_pred             CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH-H-CHHHHHHHHHh---c---cccCCHHHHHH
Confidence            3455555566666677777777777766543  566777777777777 2 23333344332   1   12233444666


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-CCHhHHHHHHhhcCCCChhhHHHHHHHH
Q 006437          128 IYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI-GRVDLGIKVLKETQLPNFLSFNIALCNL  195 (645)
Q Consensus       128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~  195 (645)
                      .|.+.+.++++..++.++..         +...+..+... ++++.|.+.+.+-  .+...|..++..+
T Consensus        78 ~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~  135 (140)
T smart00299       78 LCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL  135 (140)
T ss_pred             HHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            66666666666666655432         11122223333 5566666655542  2333444444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.56  E-value=0.96  Score=44.87  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=12.0

Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 006437          474 EAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~  491 (645)
                      .+....++.+++++.++.
T Consensus       212 eA~Ti~Eae~l~rqAvkA  229 (539)
T PF04184_consen  212 EASTIVEAEELLRQAVKA  229 (539)
T ss_pred             cccCHHHHHHHHHHHHHH
Confidence            345577788888776544

The molecular function of this protein is uncertain.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.22  E-value=0.71  Score=42.07  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHH
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIR  572 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~  572 (645)
                      .|+.-+.. .+.|++..|..-|....+.  -|+    ...+..|..++...|++++|..+|..+.+.-++-  -+..+--
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            45555443 3456677777777777663  232    3456667777777788888777777776533221  2466667


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 006437          573 LTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       573 l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      |.....+.|+.++|...|++..+.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            777777778888887777777643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.12  E-value=0.15  Score=32.09  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=8.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh
Q 006437          503 AIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      +...|.+.|++++|+++|+++.
T Consensus         7 la~~~~~~G~~~~A~~~~~~~l   28 (44)
T PF13428_consen    7 LARAYRRLGQPDEAERLLRRAL   28 (44)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            3333333333333333333333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.12  E-value=1.8  Score=43.68  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437          328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF  407 (645)
Q Consensus       328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~  407 (645)
                      .+.++.-+-+.|-.+.|+++-.+-..            -.+...++|+++.|.++.+..   .+...|..|.....+.|+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~  362 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQGN  362 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcCC
Confidence            44555555555555555555432211            123334445555555544332   245566666666666666


Q ss_pred             hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437          408 PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFR  486 (645)
Q Consensus       408 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  486 (645)
                      ++-|++.|.+..+         |..|+-.|.-.|+.+...++.+.....|-      ++....++.-.|+.++..+++.
T Consensus       363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666654432         44455555556666655555555444431      2333334444455555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.09  E-value=4.5  Score=36.77  Aligned_cols=193  Identities=17%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-HHHhc
Q 006437          398 LLSYFCKAGFPNQAVKLYNTMLDK-GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD-RLIEA  475 (645)
Q Consensus       398 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~  475 (645)
                      ....+...+....+...+...... ........+......+...++...+...+.........+ ......... .+...
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  143 (291)
T COG0457          65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYEL  143 (291)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHc
Confidence            333444444444444444444321 112223333333444444444555555555544433222 111111111 45555


Q ss_pred             CCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKY--PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a  551 (645)
                      |+++.|...+++......  ......+......+...++.+.|...+.+....  .++  ...+..+...+...++++.+
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHH
Confidence            555555555555533110  011222222223344455556666665555542  222  44555555555555556666


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ...+......... ....+..+...+...+..+++...+.+..
T Consensus       222 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         222 LEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             HHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            6665555543222 22333333333334445555555555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.07  E-value=5.6  Score=37.82  Aligned_cols=129  Identities=14%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             chHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CcCHHhHHHHHHHHHhcCC--
Q 006437          202 SNVKDVIGMMVRKGFYPNVRMFEILLNCFCK--MG----RIAEAYQLLGLMITLGT---SLSVNAWTVLIDGFRRLRR--  270 (645)
Q Consensus       202 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~--  270 (645)
                      ++...+++.|.+.|+.-+..+|.+..-....  ..    ....|.++|+.|++..+   .++...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            4556678888888888777776654333333  22    35568888888887643   2344556655544  3333  


Q ss_pred             --HHHHHHHHHHHHHcCCCCChh-chHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006437          271 --LDMAGYLWEKMVQNGCSPNVV-TYTSLIKGFMEAKM---FSIAFSFLDMLESEGHAPDLVFHNVLI  332 (645)
Q Consensus       271 --~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll  332 (645)
                        .+.++.+|+.+.+.|...+.. -+.+-+-+++....   ..++.++++.+.+.|+++....|..+.
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence              356677788888777655332 23333333332221   446778888888888887777766554

>PRK11906 transcriptional regulator; Provisional

Probab=94.03  E-value=2.7  Score=41.71  Aligned_cols=123  Identities=12%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             CHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437          477 RCHKAIQLFRRAIVE-KYPLD-VVSYTVAIRGLLE---------GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE  545 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  545 (645)
                      ..+.|..+|.+.... ...|+ ...|..+..++..         .....+|.++.++..+.+ +-|+.....+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            356677777777721 12233 4444444444332         234667888888888854 44899999999988889


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ++++.|...|++....++. ....|......+.-+|+.++|.+.+++..  ...|-..
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al--rLsP~~~  406 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL--QLEPRRR  406 (458)
T ss_pred             cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCchhh
Confidence            9999999999999987665 56777777788888999999999999966  3666555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.99  E-value=13  Score=41.57  Aligned_cols=172  Identities=16%  Similarity=0.060  Sum_probs=90.2

Q ss_pred             HhcCChhHHHHHHHHHHhC-----CCCCCH--hhHHHHHHHHHhcC--CHHHHHHHHHHHH--HCC---CCCCHhhHHHH
Q 006437          301 MEAKMFSIAFSFLDMLESE-----GHAPDL--VFHNVLIDCLSKMG--SYDDALDVYDGLL--ELK---LVPDSYTFCSL  366 (645)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~-----~~~~~~--~~~~~ll~~~~~~~--~~~~a~~~~~~~~--~~~---~~~~~~~~~~l  366 (645)
                      ..++++.+-+-+++++.+.     .++.|.  .-|...+..+...|  -+++++.+.++-.  ..+   ..|+...+..+
T Consensus       862 ~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i  941 (1265)
T KOG1920|consen  862 KSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI  941 (1265)
T ss_pred             HhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence            3445666666666666532     011111  12334444444444  3444444433210  000   24555555544


Q ss_pred             HHHH----HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHcC
Q 006437          367 LSTV----CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY--SFVGLLRGLCGA  440 (645)
Q Consensus       367 l~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~  440 (645)
                      ..+|    .....+++|.-+|+..+.      ..--+.+|...|++.+|+.+..++...   -+..  +-..|+..+...
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence            4443    345666666666544331      123456666777777777776665432   1211  124566667777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI  489 (645)
Q Consensus       441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  489 (645)
                      ++.-+|-++..+....        ..-.+..|++...+++|.++.....
T Consensus      1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence            7777777777665432        2335667788888888888766543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.94  E-value=4.5  Score=36.25  Aligned_cols=176  Identities=8%  Similarity=0.041  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006437           83 VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMD  162 (645)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  162 (645)
                      ...|..-..+|-. .++++.|...+.+..+- ..-+...|.       ....++.|.-+.+++.+.  +--+..++.-..
T Consensus        31 as~yekAAvafRn-Ak~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRN-AKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHHHHHHh-hccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence            4445555555555 67777777776665432 112222221       122335555555555543  222334455556


Q ss_pred             HHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC---C--CCCCHhhHHHHHHHHHhcCCHH
Q 006437          163 VLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK---G--FYPNVRMFEILLNCFCKMGRIA  237 (645)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~~~~~  237 (645)
                      +|..+|..+.|-..+++.-            -..++.++++|++++++....   +  .+--...+..+-+.+.+...++
T Consensus       100 lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             HHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            6666666665555544321            122344555666665554321   1  0011123344444555555555


Q ss_pred             HHHHHHHHHHHc----CCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          238 EAYQLLGLMITL----GTSLS-VNAWTVLIDGFRRLRRLDMAGYLWEKM  281 (645)
Q Consensus       238 ~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m  281 (645)
                      +|-..+..-...    .--++ ...|-..|-.|.-..|+..|.+.++.-
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~  216 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC  216 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence            554444332211    00111 122334444444455555565555553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.91  E-value=4.8  Score=36.53  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN  158 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  158 (645)
                      |-...|+.-+..+-+  |++++|.+.|+.+.+...  +....+...++-++-+.+++++|+...++..+.........|.
T Consensus        33 p~~~LY~~g~~~L~~--gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQK--GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            334555655555544  899999999999986532  3355677778888889999999999998887553333334555


Q ss_pred             HHHHHHH
Q 006437          159 IVMDVLF  165 (645)
Q Consensus       159 ~ll~~~~  165 (645)
                      ..|.+++
T Consensus       111 ~YlkgLs  117 (254)
T COG4105         111 YYLKGLS  117 (254)
T ss_pred             HHHHHHH
Confidence            5566655

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.90  E-value=0.77  Score=41.70  Aligned_cols=105  Identities=10%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             CCCHhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437          424 TPDNYSFVGLLRGLCG-----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV  498 (645)
Q Consensus       424 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  498 (645)
                      .-|..+|...+..+..     .+.++-....++.|.+-|+.-|..+|+.|++.+-+..                +.|. .
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence            4466777777777653     3567777777788888888888888888887665432                1221 1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN  547 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  547 (645)
                      .+....-.|-+  +-+-++.++++|...|+.||..+-..|+.++.+.+-
T Consensus       127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            22222222322  235689999999999999999999999999987764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.65  E-value=11  Score=39.72  Aligned_cols=109  Identities=10%  Similarity=0.095  Sum_probs=61.7

Q ss_pred             HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437          427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG  506 (645)
Q Consensus       427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  506 (645)
                      ..+.+--+..+...|+..+|.++-.+..    -||...|-.-+.+++..+++++-+++-+...      .+.-|.-.+.+
T Consensus       684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~  753 (829)
T KOG2280|consen  684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA  753 (829)
T ss_pred             cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence            3344555555666677777766654432    3456666666666666666666555444321      24556666666


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          507 LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRL  554 (645)
Q Consensus       507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  554 (645)
                      |.+.|+.++|.+++-+...     ..    -...+|.+.|++.+|.+.
T Consensus       754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence            6777777777666554422     11    345556666666666544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.64  E-value=1.2  Score=40.57  Aligned_cols=87  Identities=15%  Similarity=0.168  Sum_probs=36.0

Q ss_pred             HcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFT--PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  479 (645)
                      +.|++..|...|...++....  -....+-.|.+++...|+++.|..+|..+.+..++.  -+..+--|..+..+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            344455555555555443210  011223344444444555555555554444443221  1223333344444444444


Q ss_pred             HHHHHHHHHHH
Q 006437          480 KAIQLFRRAIV  490 (645)
Q Consensus       480 ~a~~~~~~~~~  490 (645)
                      +|..+|+++.+
T Consensus       233 ~A~atl~qv~k  243 (262)
T COG1729         233 EACATLQQVIK  243 (262)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.54  E-value=0.94  Score=41.99  Aligned_cols=79  Identities=24%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH-----IAVPPNAYTYR  536 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~  536 (645)
                      ..++..++..+..+|+.+.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3456667778888888888888888888765 55778888888888888888888888887653     56777666655


Q ss_pred             HHHHH
Q 006437          537 VMLLS  541 (645)
Q Consensus       537 ~ll~~  541 (645)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            54444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.50  E-value=10  Score=38.89  Aligned_cols=185  Identities=15%  Similarity=0.065  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      +...|..-+......|+.+.+.-+|+...-. +..-...|-..+.-....|+.+.|..++....+-..+..+.+.-.-..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            4557777778788888888888888776531 111122233333333344888888777776655544322222222222


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHHHhhCCCCCCHHHHHHHHHHH----
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAY---ILYSQMKHIAVPPNAYTYRVMLLSF----  542 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~ll~~~----  542 (645)
                      ..-..|+++.|..+++.+.+.-  |+ +..-..-+....+.|+.+.+.   +++....+.  .-+..+...+.--+    
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR  450 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence            2334578999999998888764  44 222223334455677777777   444433331  22333333333222    


Q ss_pred             -HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          543 -CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       543 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                       .-.++.+.|..++.++.+..+ ++...|..+++.....+
T Consensus       451 ~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  451 YKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCC
Confidence             345778888888888877543 36777888887776655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.36  E-value=2.1  Score=34.06  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCH---HHHHHHHHHHHhcC
Q 006437          507 LLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA-RIELDY---HTSIRLTKFIFKFH  581 (645)
Q Consensus       507 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g  581 (645)
                      +...|+.+.|++.|.+...  +.| +...|+.-..++.-+|+.++|+.-+.+..+. |.+ ..   ..|..-...|...|
T Consensus        53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence            3455556666666655554  333 4555555556666566666665555555542 222 21   22333333455555


Q ss_pred             ChhHHHHHHHHHHHCC
Q 006437          582 SSSSAVNQLVEMCNLG  597 (645)
Q Consensus       582 ~~~~A~~~~~~m~~~g  597 (645)
                      +.+.|..=|+...+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            5555555555555444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.28  E-value=7.7  Score=36.89  Aligned_cols=131  Identities=14%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--C----CCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCC-
Q 006437          408 PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG--A----RKIDEAINVYQGIVMNNPA---VNAHVHTAIVDRLIEAGR-  477 (645)
Q Consensus       408 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-  477 (645)
                      +++.+.+++.|.+.|+.-+..+|.+.......  .    .....|..+|+.|.+..+-   ++-..+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34556777888888887777666553333222  1    2345677778888777542   233333333322  2222 


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437          478 ---CHKAIQLFRRAIVEKYPLDV--VSYTVAIRGLLEGG--RTEEAYILYSQMKHIAVPPNAYTYRVMLL  540 (645)
Q Consensus       478 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  540 (645)
                         .++++..|+.+.+.|+..+-  ...+.++...-...  ...++.++++.+.+.|+++....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence               34556666666666655432  22222222211111  13456677777777776665555544433

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.20  E-value=14  Score=39.60  Aligned_cols=44  Identities=9%  Similarity=0.064  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 006437          224 EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRL  268 (645)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  268 (645)
                      =.+|-.|.+.|++++|.++.....+. .......+...+..|...
T Consensus       115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence            34677788889999998888555433 344556677777777765

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.19  E-value=3.4  Score=33.86  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             cCCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          439 GARKIDEAINVYQGIVMNNPA--VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  491 (645)
                      +.|++++|.+.|+.+....+.  -....--.++.+|.+.++++.|...+++.++.
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344444444444444443221  12222333444444444444444444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=7.3  Score=36.19  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=82.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-hhHH---HHHHHHHhcCCcc
Q 006437          127 RIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-LSFN---IALCNLCKLNDVS  202 (645)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~ll~~~~~~g~~~  202 (645)
                      ......|++..|..+|....... +-+...--.|...|...|+++.|..++..++.... ..+.   .-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            34567788888888888877654 33455666777888888888888888888773221 1222   2344455555555


Q ss_pred             hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcC
Q 006437          203 NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLG-TSLSVNAWTVLIDGFRRLR  269 (645)
Q Consensus       203 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~  269 (645)
                      +..++-...-..  +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|
T Consensus       221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            555555544432  1255566666777777777777766655554431 1223444445555544444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.14  E-value=17  Score=40.54  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY--TYRVMLLSF  542 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~  542 (645)
                      |.+..+.+...+.+++|.-.|+..-+         ...-+.+|..+|+|.+|+.+..++..   .-+..  +-..|...+
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence            34444444555566666555554322         12334556666677777666666542   11211  124555666


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 006437          543 CKERNIKMVKRLLQDVI  559 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~  559 (645)
                      ..+++.-+|-++..+..
T Consensus      1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHcccchhHHHHHHHHh
Confidence            66666666666665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.12  E-value=8  Score=36.62  Aligned_cols=102  Identities=12%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437          222 MFEILLNCFCKMGRIA---EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK  298 (645)
Q Consensus       222 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  298 (645)
                      ++..++.+|...+..+   +|..+++.+.+.. +-.+.++-.-++.+.+.++.+++.+++.+|...- .-....+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            5566677777666544   4555555554432 2234555556677777888888888888888652 213445555555


Q ss_pred             HHHh--cCChhHHHHHHHHHHhCCCCCCH
Q 006437          299 GFME--AKMFSIAFSFLDMLESEGHAPDL  325 (645)
Q Consensus       299 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~  325 (645)
                      .+-.  ......|...+..+....+.|..
T Consensus       164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            5422  23344555555555544344433

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.10  E-value=0.34  Score=30.49  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVA  503 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  503 (645)
                      ++..+...|...|++++|.++|+++++.. |-|...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            45566777777777777777777777664 3345555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.89  E-value=8.7  Score=36.40  Aligned_cols=165  Identities=12%  Similarity=0.048  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437          428 YSFVGLLRGLCGARKI---DEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI  504 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  504 (645)
                      .++..++.++...+..   ++|..+++.+....+. .+.++-.-++.+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            3556677777766654   4566666666555544 34444455566666888999999999988752 21344555555


Q ss_pred             HHHHh--cCCHHHHHHHHHHHhhCCCCCCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHHH-CCCCcCHHHH
Q 006437          505 RGLLE--GGRTEEAYILYSQMKHIAVPPNAY-TYRVM-L---LSFCKERN------IKMVKRLLQDVID-ARIELDYHTS  570 (645)
Q Consensus       505 ~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l-l---~~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~  570 (645)
                      ..+..  ......|...+..+....+.|... ....+ +   ......++      .+...++++.+.+ .+.+.+..+-
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            55522  233456667777766544566543 11111 1   11122211      4444455554332 2223333332


Q ss_pred             HH---H----HHHHHhcCChhHHHHHHHHHH
Q 006437          571 IR---L----TKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       571 ~~---l----~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..   |    +..+.+.+++++|.++|+-..
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22   2    234667899999999988543

It is also involved in sporulation [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.75  E-value=1.2  Score=41.40  Aligned_cols=72  Identities=11%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID-----ARIELDYHTS  570 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~  570 (645)
                      ..++..++..+...|+.+.+.+.++++..  ..| +...|..++.+|.+.|+...|+..++.+.+     .|+.|.+.+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            44555555556666666666666666655  233 555666666666666666666666555542     3444444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.54  E-value=0.19  Score=29.51  Aligned_cols=31  Identities=10%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 006437          556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAV  587 (645)
Q Consensus       556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  587 (645)
                      ++.++.++. ++..|..|..+|...|++++|+
T Consensus         3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            444554444 5666667777777777666664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.49  E-value=13  Score=37.40  Aligned_cols=56  Identities=14%  Similarity=0.107  Sum_probs=25.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437          398 LLSYFCKAGFPNQAVKLYNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGI  453 (645)
Q Consensus       398 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  453 (645)
                      +..+.-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++.+-
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            333344455555555555555433111 11223344455555555555555555443

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.27  E-value=3.1  Score=39.44  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             HhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          301 MEAKMFSIAFSFLDMLESE--GHAPDLVFHNVLIDCLSKMGSYDDALD  346 (645)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~  346 (645)
                      ....+.++|+..+..-..+  ...---.++..+..+.++.|.+++++.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~   64 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK   64 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence            3455666666666555443  011122345555566666666665544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.10  E-value=8.7  Score=34.53  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIA--VPP-NAYTYRVMLLSFCKERNIKMVKRLL  555 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  555 (645)
                      |-..|-.+.-..++..|...++..-+.+  ..| +..+...|+.+| ..|+.+++.+++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            4444555556667888888887754322  112 566777777776 456666665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.05  E-value=9.3  Score=34.77  Aligned_cols=182  Identities=11%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF--TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV  469 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  469 (645)
                      ...|+.-+. -.+.|++++|.+.|+.+..+-.  +-...+...++.++-+.++++.|....++.+...+...-.-|-..+
T Consensus        35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            344444433 4578899999999998886521  1224455566677788899999999999888886654444455545


Q ss_pred             HHHHhc-------CCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006437          470 DRLIEA-------GRC---HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML  539 (645)
Q Consensus       470 ~~~~~~-------g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  539 (645)
                      .+++.-       .+.   ..|..-|++++.+-  ||..             -...|..-...+...   - ..-=..+.
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~---L-A~~Em~Ia  174 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA---L-AGHEMAIA  174 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH---H-HHHHHHHH
Confidence            444421       122   22333334444331  2211             001111111111000   0 00011234


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          540 LSFCKERNIKMVKRLLQDVIDARIEL---DYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +-|.+.|.+-.|..-++.|++. ..-   ....+-.+.++|.+.|-.++|.+.-+-+.
T Consensus       175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            5566677777777777777664 211   23344455566777777777766655554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.94  E-value=2.5  Score=36.66  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL-  540 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-  540 (645)
                      .+..+.+.|.+.|+.+.|.+.|.++.+....+.  ...+-.+|+.....+++..+.....+....--.+.......=+. 
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            455667777777777777777777666543332  34556666666777777777776666543211111111111111 


Q ss_pred             ----HHHhcCCHHHHHHHHHHHH
Q 006437          541 ----SFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       541 ----~~~~~g~~~~a~~~~~~~~  559 (645)
                          .+...+++..|-+.|-...
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence                1234567777666665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.70  E-value=7.6  Score=33.03  Aligned_cols=134  Identities=10%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 006437          205 KDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR--RLDMAGYLWEKMV  282 (645)
Q Consensus       205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~  282 (645)
                      .+.++.+.+.++.|+...+..+++.+.+.|++....+++    ..++-+|.......+-.+....  -..-|.+++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            356666777888999999999999999999877655544    4444445444433332222211  1233444444443


Q ss_pred             HcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          283 QNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL  354 (645)
Q Consensus       283 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  354 (645)
                              ..+..++..+...|++-+|+++.+.....    +......++.+..+.+|...-..+++-..+.
T Consensus        90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 --------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             --------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                    13566778888999999999988775332    2233455777777777776666666655553

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.34  E-value=8.1  Score=32.66  Aligned_cols=123  Identities=11%  Similarity=0.011  Sum_probs=53.4

Q ss_pred             HhcCCcchHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-hHHHH--HHHHHhcCCH
Q 006437          196 CKLNDVSNVKDVIGMMVRKGFYPNVR-MFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN-AWTVL--IDGFRRLRRL  271 (645)
Q Consensus       196 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~  271 (645)
                      .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-+....|-.. -..-|  .-.+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34555666666666665554321111 11122333445566666666666665433222221 00001  1122344555


Q ss_pred             HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437          272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES  318 (645)
Q Consensus       272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  318 (645)
                      +....-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|.++..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55544444443332222222333444444455555555555555544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.23  E-value=16  Score=36.00  Aligned_cols=456  Identities=11%  Similarity=0.094  Sum_probs=250.8

Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006437           66 ALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEM  145 (645)
Q Consensus        66 A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  145 (645)
                      -+++=+.+...|.   |..+|-.|+..+.. .+..+...+.+++|.+.- +.-+..+..-+..=....++..+..+|.+.
T Consensus        28 ~lrLRerIkdNPt---nI~S~fqLiq~~~t-q~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rC  102 (660)
T COG5107          28 ELRLRERIKDNPT---NILSYFQLIQYLET-QESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRC  102 (660)
T ss_pred             HHHHHHHhhcCch---hHHHHHHHHHHHhh-hhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence            3455566666654   89999999999999 899999999999996643 445567777777777788999999999998


Q ss_pred             hhCCCCCCHHhHHHHHHHHHhcC-----C----HhHHHHHHhh-c-C-CCChhhHHHH---HHHHHhcCC------cchH
Q 006437          146 GRFGFTPNTFARNIVMDVLFKIG-----R----VDLGIKVLKE-T-Q-LPNFLSFNIA---LCNLCKLND------VSNV  204 (645)
Q Consensus       146 ~~~~~~~~~~~~~~ll~~~~~~g-----~----~~~A~~~~~~-~-~-~~~~~~~~~l---l~~~~~~g~------~~~a  204 (645)
                      ....+  +...|...+.--.+.+     +    .-+|.++.-. + . +.....|+..   +...-..|.      ++..
T Consensus       103 L~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i  180 (660)
T COG5107         103 LKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI  180 (660)
T ss_pred             Hhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence            87644  4556666665444432     1    2222222211 1 1 2222333333   333223333      3444


Q ss_pred             HHHHHHHHHCCCC------CCHhhHHHHHHHHHh-------cCCHHHHHHHHHHHHH--cCCC----cCHHhHHHHHH--
Q 006437          205 KDVIGMMVRKGFY------PNVRMFEILLNCFCK-------MGRIAEAYQLLGLMIT--LGTS----LSVNAWTVLID--  263 (645)
Q Consensus       205 ~~~~~~m~~~~~~------p~~~~~~~ll~~~~~-------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~li~--  263 (645)
                      .+.+..|...-+.      -|-..|..=+.-...       ..-+-.|.+.++++..  .|..    .+..++|-.-+  
T Consensus       181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s  260 (660)
T COG5107         181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS  260 (660)
T ss_pred             HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence            5555555543110      011122222211111       1124456666666643  2321    12333333211  


Q ss_pred             ---------HHHhc-----CC-H-HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437          264 ---------GFRRL-----RR-L-DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF  327 (645)
Q Consensus       264 ---------~~~~~-----~~-~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  327 (645)
                               .=...     |+ . ....-++++.... +.-....|--.-.-+...++-+.|+.....-...  .|.   
T Consensus       261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---  334 (660)
T COG5107         261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---  334 (660)
T ss_pred             cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---
Confidence                     10000     00 0 0111112221111 1112222322223334455666666655443221  233   


Q ss_pred             HHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437          328 HNVLI-DCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC---LSGRFSLLPKLVCGLEVEADLVVYNALLSYFC  403 (645)
Q Consensus       328 ~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~  403 (645)
                      ....+ ..|.-..+.+.+...|+.....     ...--..+.+-.   ..|+++...+++-.. ...=...|...+..-.
T Consensus       335 L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr-~~k~t~v~C~~~N~v~  408 (660)
T COG5107         335 LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR-INKLTFVFCVHLNYVL  408 (660)
T ss_pred             hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH-HhhhhhHHHHHHHHHH
Confidence            22222 3333344555555555544321     000000000000   122333333333110 0122446677777777


Q ss_pred             HcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKG-FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI  482 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  482 (645)
                      +..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-....++ ++.--.-.+..+...++-+.|.
T Consensus       409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~inde~nar  486 (660)
T COG5107         409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRINDEENAR  486 (660)
T ss_pred             HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCcHHHHH
Confidence            7788999999999999988 6788888999998765 58888999999987777655 3333355667778889999999


Q ss_pred             HHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437          483 QLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE  545 (645)
Q Consensus       483 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  545 (645)
                      .+|+..+.+ +..+  ...|..+|.--..-|+...+..+-+.|.+  +-|...+.......|.-.
T Consensus       487 aLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik  548 (660)
T COG5107         487 ALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence            999966543 1223  46788999888899999999999999988  678777777777666543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.95  E-value=7.8  Score=31.80  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      ....|..-...+.+  |+++.|...|+.+...-.  +-....-..++.+|.+.+++++|...+++.++.+..-....|..
T Consensus        10 ~~~ly~~a~~~l~~--~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQK--GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            44455554444444  888888888888877532  22455667778888888888888888888887653333345555


Q ss_pred             HHHHHHhc
Q 006437          160 VMDVLFKI  167 (645)
Q Consensus       160 ll~~~~~~  167 (645)
                      .+.+++.-
T Consensus        88 Y~~gL~~~   95 (142)
T PF13512_consen   88 YMRGLSYY   95 (142)
T ss_pred             HHHHHHHH
Confidence            55555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.57  E-value=3.5  Score=35.80  Aligned_cols=60  Identities=10%  Similarity=0.088  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          188 FNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN--VRMFEILLNCFCKMGRIAEAYQLLGLMI  247 (645)
Q Consensus       188 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~  247 (645)
                      +..+..-|++.|+.+.|.+.|.++.+....+.  ...+..+|+.....+++..+.....+..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44455555555555555555555554432222  2344555555566666666655555544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.56  E-value=9.4  Score=32.05  Aligned_cols=50  Identities=14%  Similarity=0.049  Sum_probs=21.4

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +.++.+++..++..+.-.  .|..... ..-...+.+.|++.+|+.+++++.+
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344555555555554433  2322211 1112233445555555555555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.53  E-value=0.63  Score=27.69  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=10.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQ  522 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~  522 (645)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444445555555554444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.42  E-value=0.61  Score=27.75  Aligned_cols=26  Identities=8%  Similarity=-0.031  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          569 TSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       569 ~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36677788888888888888888754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.21  E-value=10  Score=32.04  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=53.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH---H--HHHHhcCC
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVS-YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM---L--LSFCKERN  547 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---l--~~~~~~g~  547 (645)
                      +.+..++|+.-|..+.+.|...-+.. --.+.....+.|+...|...|++.-.-  .|.+....-+   -  ..+...|.
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHHHhcccc
Confidence            34445555555555554432211111 111112233455555555555555442  2222222111   1  12234455


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437          548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE  602 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~  602 (645)
                      ++....-.+-+...+-......-..|.-+-.+.|++.+|.++|+.+.+....|..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn  202 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN  202 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence            5555544444432222212233344555555666666666666666544444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.82  E-value=0.5  Score=27.71  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=12.1

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAY  517 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~  517 (645)
                      |...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4555555555555555555553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=89.52  E-value=16  Score=33.03  Aligned_cols=168  Identities=19%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR-GLCGARKIDEAINVYQGIVMNNP--AVNAHVHTAI  468 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l  468 (645)
                      ...+......+...+++..+...+.........+ ......... .+...|+++.+...+.......+  ......+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  173 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL  173 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence            3445555566666777888888888777653332 122222222 67788899999988888855332  1233444445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER  546 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g  546 (645)
                      ...+...++.+.+...+.+..... +. ....+..+...+...++.+.|...+.....  ..|+ ...+..+...+...+
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcC
Confidence            555777889999999999888764 33 367788888888888899999999999887  4454 455555555555677


Q ss_pred             CHHHHHHHHHHHHHCCC
Q 006437          547 NIKMVKRLLQDVIDARI  563 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~  563 (645)
                      ..+.+...+.+..+...
T Consensus       251 ~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         251 RYEEALEALEKALELDP  267 (291)
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            78999988888876543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.34  E-value=13  Score=31.72  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437          140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN  219 (645)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  219 (645)
                      +..+.+.+.+++|+...+..+++.+.+.|++.....++..-.-+|.......+-.+  .+....+.++=-.|.++    =
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR----L   88 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR----L   88 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH----h
Confidence            44444556677777777777777777777776666666654444433332222111  12223333333333322    0


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLM  246 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~  246 (645)
                      ...+..++..+...|++-+|.++....
T Consensus        89 ~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   89 GTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            012444555666666666666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.27  E-value=0.86  Score=26.51  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      |..+..+|...|++++|+..|++..+
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            44444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.01  E-value=27  Score=35.13  Aligned_cols=90  Identities=11%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 006437          501 TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK--ERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFI  577 (645)
Q Consensus       501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~  577 (645)
                      +.++.-+.+.|-.++|...+..+.... +|+...|..++..-..  .-+...++++++.|.. .|  -|+..|...+..-
T Consensus       464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e  540 (568)
T KOG2396|consen  464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE  540 (568)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence            445555556666666666666666521 2345555555432211  1125666777777764 45  4677777776666


Q ss_pred             HhcCChhHHHHHHHHH
Q 006437          578 FKFHSSSSAVNQLVEM  593 (645)
Q Consensus       578 ~~~g~~~~A~~~~~~m  593 (645)
                      ...|..+.+-.++-++
T Consensus       541 ~~~g~~en~~~~~~ra  556 (568)
T KOG2396|consen  541 LPLGRPENCGQIYWRA  556 (568)
T ss_pred             ccCCCcccccHHHHHH
Confidence            6777777776654443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.00  E-value=0.051  Score=45.51  Aligned_cols=128  Identities=15%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437          261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS  340 (645)
Q Consensus       261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  340 (645)
                      ++..+.+.+.++...++++.+...+...+....+.++..|++.+..++..++++.       .+..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            4455556666677777777777655445566667777777777666766666651       111223446666667777


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437          341 YDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF  407 (645)
Q Consensus       341 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~  407 (645)
                      ++++.-++.++....-..         ..+...++++.|.+.+..   ..+...|..++..+...+.
T Consensus        86 ~~~a~~Ly~~~~~~~~al---------~i~~~~~~~~~a~e~~~~---~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   86 YEEAVYLYSKLGNHDEAL---------EILHKLKDYEEAIEYAKK---VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHHHCCTTHTTCS---------STSSSTHCSCCCTTTGGG---CSSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHHHcccHHHHH---------HHHHHHccHHHHHHHHHh---cCcHHHHHHHHHHHHhcCc
Confidence            777766666543321100         012233444444444433   2345566666666555443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.62  E-value=32  Score=35.47  Aligned_cols=130  Identities=6%  Similarity=-0.015  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTF-LLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI  159 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  159 (645)
                      .+...|..++.--.. ....+.+..++..+...  .|....| ......=.+.|..+.+..+|++-.+ |++.++..|..
T Consensus        43 ~~f~~wt~li~~~~~-~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~  118 (577)
T KOG1258|consen   43 LDFDAWTTLIQENDS-IEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS  118 (577)
T ss_pred             hcccchHHHHhccCc-hhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence            455566666655444 34456666666666654  3555443 3333333567888889999988875 45677777776


Q ss_pred             HHHHHHh-cCCHhHHHHHHhhcCC------CChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437          160 VMDVLFK-IGRVDLGIKVLKETQL------PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK  214 (645)
Q Consensus       160 ll~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  214 (645)
                      .+..+.. .|+.+.....|+....      ....-|...|.--...+++.....+++..++.
T Consensus       119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            6655544 4677777777776541      22334666676666777778888888877764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.47  E-value=13  Score=30.71  Aligned_cols=50  Identities=12%  Similarity=0.026  Sum_probs=26.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAYILYSQMKHI  526 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~  526 (645)
                      .++++++..+++.+.-.  .|+..-. ..-...+...|++++|.+++++..+.
T Consensus        23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            56666666666666543  2332211 11223345666666666666666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.47  E-value=37  Score=35.97  Aligned_cols=152  Identities=11%  Similarity=0.016  Sum_probs=69.5

Q ss_pred             cCCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437          439 GARKIDEAINVYQGIVM-------NNPAVNAHVHTAIVDRLIEAG-----RCHKAIQLFRRAIVEKYPLDVVSYTVAIRG  506 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  506 (645)
                      ...+.+.|..+++.+.+       .+   .......+..+|.+..     +.+.|..++....+.| .|+...  .+...
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~  334 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVL  334 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHH
Confidence            34566666666666554       22   2223344555555432     4555666666666665 222222  22222


Q ss_pred             HHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          507 LLE---GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF--CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       507 ~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                      +..   ..+...|.++|......|. +....+..+.-..  ....+...|..++++.-+.| .|....-...+..+.. +
T Consensus       335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~  411 (552)
T KOG1550|consen  335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G  411 (552)
T ss_pred             HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence            221   2345667777776666552 2222221111111  12235666666666666665 2221111122222333 5


Q ss_pred             ChhHHHHHHHHHHHCCCC
Q 006437          582 SSSSAVNQLVEMCNLGLI  599 (645)
Q Consensus       582 ~~~~A~~~~~~m~~~g~~  599 (645)
                      +++.+.-.+..+.+.|.+
T Consensus       412 ~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  412 RYDTALALYLYLAELGYE  429 (552)
T ss_pred             cccHHHHHHHHHHHhhhh
Confidence            555555555555554443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=88.19  E-value=41  Score=36.22  Aligned_cols=345  Identities=10%  Similarity=0.012  Sum_probs=171.8

Q ss_pred             cCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 006437           75 KQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNT  154 (645)
Q Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  154 (645)
                      ..++.+.....-..-+..+++ .+++....+.+..     .+.+...-.....+....|+.++|......+-..| ...+
T Consensus        91 ~~~~~P~~~~Lr~~~l~~La~-~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p  163 (644)
T PRK11619         91 ANPTLPPARSLQSRFVNELAR-REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLP  163 (644)
T ss_pred             HCCCCchHHHHHHHHHHHHHH-ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCC
Confidence            333333333344444555666 5666666552211     13455555566677777777777766666665554 3345


Q ss_pred             HhHHHHHHHHHhcCC------------------HhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437          155 FARNIVMDVLFKIGR------------------VDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF  216 (645)
Q Consensus       155 ~~~~~ll~~~~~~g~------------------~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  216 (645)
                      ..++.++..+.+.|.                  ...|..+...+.+........++..+   .+...+..++..     +
T Consensus       164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~  235 (644)
T PRK11619        164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----T  235 (644)
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----c
Confidence            556666666665443                  22222222222111111111111111   112222221111     1


Q ss_pred             CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcC-CCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 006437          217 YPNVRMFEILLNCFC--KMGRIAEAYQLLGLMITLG-TSLS--VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV  291 (645)
Q Consensus       217 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  291 (645)
                      .|+...-..++.++.  ...+.+.|..++....... ..+.  ..++..+.......+...+|...++.....  ..+..
T Consensus       236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~  313 (644)
T PRK11619        236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTS  313 (644)
T ss_pred             CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcH
Confidence            123211111222222  3346688888888775432 2222  123444443333443255666666654432  13455


Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006437          292 TYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC  371 (645)
Q Consensus       292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  371 (645)
                      ....-+......++++.+...+..|....- -...-.--+.+++...|+.++|...|+.+...      .+|-.++.+- 
T Consensus       314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~-  385 (644)
T PRK11619        314 LLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQ-  385 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHH-
Confidence            556666677788999999999988865422 23344455777877799999999999987431      2333333221 


Q ss_pred             hcCCcccHHHHHhcCCCCCC-H-H---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006437          372 LSGRFSLLPKLVCGLEVEAD-L-V---VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEA  446 (645)
Q Consensus       372 ~~~~~~~a~~~~~~~~~~~~-~-~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  446 (645)
                      +.|..-... . .  ...+. . .   .--.-+..+...|....|...+..+.+.   .+......+.......|..+.+
T Consensus       386 ~Lg~~~~~~-~-~--~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a  458 (644)
T PRK11619        386 RLGEEYPLK-I-D--KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS  458 (644)
T ss_pred             HcCCCCCCC-C-C--CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence            122210000 0 0  00000 0 0   0112234566778888888888887764   2344445555555566777766


Q ss_pred             HHHHH
Q 006437          447 INVYQ  451 (645)
Q Consensus       447 ~~~~~  451 (645)
                      .....
T Consensus       459 i~~~~  463 (644)
T PRK11619        459 VQATI  463 (644)
T ss_pred             HHHHh
Confidence            65544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.11  E-value=17  Score=31.66  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHH
Q 006437          470 DRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFC  543 (645)
Q Consensus       470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~  543 (645)
                      +-+.+.|++++|..-|.+++..- ++.     ...|..-..++.+.+.++.|+.-..+..+  +.|+ ...+.--..+|.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence            34667888888888888887763 332     34555566678888899999988888887  4453 334444466788


Q ss_pred             hcCCHHHHHHHHHHHHHCCCC
Q 006437          544 KERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       544 ~~g~~~~a~~~~~~~~~~~~~  564 (645)
                      +...+++|++-++++.+..+.
T Consensus       180 k~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcc
Confidence            888999999999999886544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.87  E-value=8.8  Score=29.14  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437          100 FETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV  163 (645)
Q Consensus       100 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~  163 (645)
                      .-+..+-+..+....+.|++....+.+++|.+.+++..|+++++-+. +.|  .....|..+++-
T Consensus        26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE   88 (108)
T PF02284_consen   26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence            33555666666667778888888888888888888888888888776 333  222266666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.74  E-value=4.4  Score=30.33  Aligned_cols=63  Identities=11%  Similarity=0.089  Sum_probs=46.0

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437           99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV  163 (645)
Q Consensus        99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~  163 (645)
                      +.-++.+-+..+....+.|++....+.+++|.+.+|+..|+++++-+. +.|.  +...|..+++-
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe   85 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE   85 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence            444566667777777788888889999999988899999999988776 4432  44466665543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.63  E-value=7.5  Score=33.71  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPPN-----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK  579 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  579 (645)
                      +-+.+.|++++|..-|.+.++. +++.     +..|..-..++.+.+.++.|+.--.+.++.++. .......-..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence            3456789999999999999874 2332     234555556778999999999998888887654 33344455678889


Q ss_pred             cCChhHHHHHHHHHHHC
Q 006437          580 FHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       580 ~g~~~~A~~~~~~m~~~  596 (645)
                      ..++++|++=|+++.+.
T Consensus       181 ~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILES  197 (271)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            99999999999999854

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.38  E-value=12  Score=35.75  Aligned_cols=126  Identities=8%  Similarity=0.013  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-----CH
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYP-----LDVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IAVPP-----NA  532 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p-----~~  532 (645)
                      ++..++...+.++++++.|+...+--..     .....+-.|...|.+..++++|.-+..+..+    .++.-     ..
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            3444555555555555555554432100     1123455555556666666665555444322    11111     01


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVID----ARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVE  592 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  592 (645)
                      .....|.-++...|..-.|.+.-++..+    .|-.+ .....-.+.+.|...|+.|.|..-|++
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence            1233444555566666555555555433    22111 122334455566666666666655554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.26  E-value=1.4  Score=25.52  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=9.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      .+...+.+.|++++|++.|++..
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            33334444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.04  E-value=4.1  Score=30.83  Aligned_cols=46  Identities=13%  Similarity=0.105  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      +..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444555555556666666666666666666666666666666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.97  E-value=17  Score=30.53  Aligned_cols=68  Identities=13%  Similarity=0.009  Sum_probs=39.5

Q ss_pred             HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      ...++.+++..++..+.-..|. ....-..-...+...|++.+|..+|+++....  |....-..|+..|.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL   88 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL   88 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence            4566777777777777665544 22222333445667788888888888876553  33333334443333

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.84  E-value=6.6  Score=29.46  Aligned_cols=59  Identities=10%  Similarity=0.057  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHH
Q 006437          514 EEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID-ARIELDYHTSIRLT  574 (645)
Q Consensus       514 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~  574 (645)
                      -++.+-+..+....+-|++.+....++||.+.+|+..|.++++-++. .+.  +...|..++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l   83 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence            34555556666666888888888889999999999999998887763 332  344555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.26  E-value=11  Score=38.65  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHH
Q 006437          232 KMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFS  311 (645)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  311 (645)
                      +.|+++.|.++..+..      +..-|..|.++....+++..|.+.|.....         |..|+..+...|+-+....
T Consensus       649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            4455555555443321      344455555555555555555555544332         3344444555555444444


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          312 FLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYD  349 (645)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  349 (645)
                      +-....+.|..      |...-++...|+++++.+++.
T Consensus       714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence            44444443321      222233444555555555543

>PRK09687 putative lyase; Provisional

Probab=86.03  E-value=31  Score=32.61  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437          117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR  169 (645)
Q Consensus       117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  169 (645)
                      ++.......+.++...|..+ +......+.+   .+|+..-..-+.++...|+
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~   83 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGM   83 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
Confidence            45555555555555555422 2222222322   2344444445555555554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=85.94  E-value=20  Score=33.40  Aligned_cols=158  Identities=9%  Similarity=0.046  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC--ChHHHHH
Q 006437           64 LIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELAR-VGCVIKAQTFLLFLRIYWRGE--MYGMVLE  140 (645)
Q Consensus        64 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~  140 (645)
                      ++-+.|++-+..+....++.. |..|+.   + +....+|+.+|+.... ..+--|......+++......  ....-.+
T Consensus       113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~-N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE  187 (292)
T PF13929_consen  113 EDLISFLKLVIINLSSNKSFN-YWDLVK---R-NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE  187 (292)
T ss_pred             HHHHHHHHHHHhccccccchH-HHHHHH---h-hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence            466667766655544333333 555543   2 3446677777774322 234557777777777776522  2233333


Q ss_pred             HHHHHh-hCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-----CCChhhHHHHHHHHHhcCCcchHHHHHHH----
Q 006437          141 AFDEMG-RFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-----LPNFLSFNIALCNLCKLNDVSNVKDVIGM----  210 (645)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----  210 (645)
                      +.+.+. ..|-.++..+.-.++..+++.++++.-.++++...     ..|...|..+|......|+..-...+.++    
T Consensus       188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL  267 (292)
T PF13929_consen  188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL  267 (292)
T ss_pred             HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence            334443 33456777788889999999999999999888654     45778899999999999997666555543    


Q ss_pred             -HHHCCCCCCHhhHHHH
Q 006437          211 -MVRKGFYPNVRMFEIL  226 (645)
Q Consensus       211 -m~~~~~~p~~~~~~~l  226 (645)
                       +++.|+..+...-..+
T Consensus       268 wikR~~V~v~~~L~~~L  284 (292)
T PF13929_consen  268 WIKRNNVDVTDELRSQL  284 (292)
T ss_pred             EeeecCCcCCHHHHHHH
Confidence             2233444444443333

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.28  E-value=59  Score=35.05  Aligned_cols=191  Identities=10%  Similarity=-0.028  Sum_probs=96.4

Q ss_pred             HHcCChHHHHHHHHHHHHCCC-CCC-----HhhHHHHHHH--HHcCCCHHHHHHHHH--------HHHHcCCCCcHHHHH
Q 006437          403 CKAGFPNQAVKLYNTMLDKGF-TPD-----NYSFVGLLRG--LCGARKIDEAINVYQ--------GIVMNNPAVNAHVHT  466 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~~ll~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~  466 (645)
                      +-.+++..|...++.|.+..- .|+     ...+...+.+  +-..|+++.|...|.        .....+...+..++.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            457889899999998886421 111     1222233332  335699999999997        455556665655554


Q ss_pred             HH--HHHHHh--cCCHHH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcC--CHHHHHHHHHHHh-hC--CCCCC
Q 006437          467 AI--VDRLIE--AGRCHK--AIQLFRRAIVE-KYPL--DVVSYTVA-IRGLLEGG--RTEEAYILYSQMK-HI--AVPPN  531 (645)
Q Consensus       467 ~l--~~~~~~--~g~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~m~-~~--~~~p~  531 (645)
                      .+  +-.+..  ....++  +.++++.+... .-.|  +..+++.+ +.++....  ...++...+.+.. ..  ....+
T Consensus       452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~  531 (608)
T PF10345_consen  452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS  531 (608)
T ss_pred             HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence            42  222222  222333  66666655432 1112  23334444 33333221  1224444433322 11  01111


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHH-----HHHHHHHhcCChhHHHHHHHHHH
Q 006437          532 ---AYTYRVMLLSFCKERNIKMVKRLLQDVIDA---RIELDYHTSI-----RLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       532 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                         ..+++.+...+. .|+..+..++.....+.   ..+.....|.     .+.+.+...|+.++|.+...+..
T Consensus       532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence               223333333334 68877766665554321   1111334443     34455778899999998887764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.96  E-value=19  Score=30.83  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      +++|...|++..+  ..|+..+|..-+..+.      +|-++..++.+.+
T Consensus        96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~  137 (186)
T PF06552_consen   96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence            4445555555555  5677777766665552      3455555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.69  E-value=8.7  Score=35.87  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=45.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437          405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN  457 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  457 (645)
                      .-++++++.++..=++-|+-||.++++.+++.+.+.+++.+|..+...|+...
T Consensus       113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            44677888888888888999999999999999999999999988888777654

>PRK09687 putative lyase; Provisional

Probab=84.43  E-value=37  Score=32.10  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=16.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437          398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRG  436 (645)
Q Consensus       398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  436 (645)
                      .+.++...|.. +|...+..+.+.  .||...-...+.+
T Consensus       241 a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a  276 (280)
T PRK09687        241 IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK  276 (280)
T ss_pred             HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence            44455555553 455555555543  2344444333333

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.06  E-value=1.6  Score=36.35  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437           90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR  169 (645)
Q Consensus        90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  169 (645)
                      +..+.+ .+.+..+..+++.+...+...+....+.++..|++.+..+...++++..       +.+-...+++.+.+.|-
T Consensus        14 i~~~~~-~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   14 ISAFEE-RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             HHHCTT-TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            333444 4555555555555554443344555555555555555545444444411       11222334444555555


Q ss_pred             HhHHHHHHhh
Q 006437          170 VDLGIKVLKE  179 (645)
Q Consensus       170 ~~~A~~~~~~  179 (645)
                      +++|.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.06  E-value=3.6  Score=38.70  Aligned_cols=57  Identities=16%  Similarity=0.075  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      -.+-|.+.|.+++|+..|.+..... +-|.+++..-..+|.+..++..|+.-......
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA  159 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3566778888888888887766543 22777777777788888777777666665544

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=83.96  E-value=37  Score=31.72  Aligned_cols=111  Identities=10%  Similarity=0.098  Sum_probs=64.8

Q ss_pred             HhHHHHHHhhcC-----CCChhhHHHHHHHHHh-cC-CcchHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          170 VDLGIKVLKETQ-----LPNFLSFNIALCNLCK-LN-DVSNVKDVIGMMVR-KGFYPNVRMFEILLNCFCKMGRIAEAYQ  241 (645)
Q Consensus       170 ~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (645)
                      +-+|+.+|+...     -.|...-..+++.+.. .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            455666666322     2344444455554443 11 22222333333332 2345667777777888888888888777


Q ss_pred             HHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          242 LLGLMITL-GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEK  280 (645)
Q Consensus       242 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  280 (645)
                      +++..... ++..|...|..+|+.-...||..-..++.++
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            77776654 5566777788888877777777655555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.90  E-value=3.3  Score=23.93  Aligned_cols=27  Identities=7%  Similarity=0.125  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +|..+..+|...|++++|+..++++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444455555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.90  E-value=2.6  Score=25.75  Aligned_cols=27  Identities=15%  Similarity=-0.048  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          568 HTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .+++.|...|...|++++|.+++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            467777788888888888888877765

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.74  E-value=64  Score=34.22  Aligned_cols=116  Identities=14%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCCcCHHhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------cCCCCChhchHHHHHHHHhcC-
Q 006437          236 IAEAYQLLGLMITLGTSLSVNAWTVLI--DG-FRRLRRLDMAGYLWEKMVQ-------NGCSPNVVTYTSLIKGFMEAK-  304 (645)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~-  304 (645)
                      ...+.++++...+.|.. ........+  .+ +....|.+.|..+|+....       .|   ......-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            34566666666655421 111111111  22 3355677777777777755       33   3334555666665543 


Q ss_pred             ----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 006437          305 ----MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK-MGSYDDALDVYDGLLELKL  356 (645)
Q Consensus       305 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~  356 (645)
                          +.+.|..++...-+.|.+ +....-..+..... ..+...|.++|....+.|.
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~  359 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH  359 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence                556688888777776643 43333222222222 2356788888888777663

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=83.63  E-value=68  Score=34.49  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             HHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437          159 IVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL  198 (645)
Q Consensus       159 ~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~  198 (645)
                      .++--+.++|++++|.++..+..   ......+...+..|+..
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            34555667777777777773322   33334556666666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.97  E-value=13  Score=32.58  Aligned_cols=77  Identities=14%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHhcCChhH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID---ARIELDYHTSIRLTKFIFKFHSSSS  585 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~  585 (645)
                      +.|+ ++|.+.|-.+...+.--++.....|..-|. ..|.+++.+++-++.+   .+-.+|+..+..|+..+.+.|+++.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            4444 667777777776654445555555444444 6678888888877764   2335678888888888888888877


Q ss_pred             HH
Q 006437          586 AV  587 (645)
Q Consensus       586 A~  587 (645)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            63

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.74  E-value=32  Score=30.00  Aligned_cols=91  Identities=7%  Similarity=0.011  Sum_probs=58.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR-----VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK  579 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  579 (645)
                      ..+...|++++|+.-++....   .|....+.     -|.+.....|.+++|...++...+.+..  ......-.+++..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence            446677788888877777664   23222222     2344556778888888888776554432  4444555677888


Q ss_pred             cCChhHHHHHHHHHHHCCCCC
Q 006437          580 FHSSSSAVNQLVEMCNLGLIP  600 (645)
Q Consensus       580 ~g~~~~A~~~~~~m~~~g~~p  600 (645)
                      .|+.++|..-|++....+-.|
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         172 KGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cCchHHHHHHHHHHHHccCCh
Confidence            888888888888888776333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.59  E-value=52  Score=32.35  Aligned_cols=65  Identities=5%  Similarity=-0.003  Sum_probs=39.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP---NAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ...+|..++..+.+.|+++.|...+.++...+..+   .+.....-++.....|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567777777777777777777777766532111   233333445555666777777777766655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.09  E-value=1.1  Score=27.99  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=11.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH
Q 006437          573 LTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       573 l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      |..+|...|+.+.|.+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44455555555555555555543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.00  E-value=3.3  Score=25.24  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=12.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      +++.|...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444555555555555555555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.00  E-value=14  Score=36.68  Aligned_cols=134  Identities=12%  Similarity=-0.098  Sum_probs=89.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437          434 LRGLCGARKIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR  512 (645)
Q Consensus       434 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  512 (645)
                      |.--...|++-.|-+-+....+..+ .|+...  .....+...|+++.+...+...... +.....+..++++...+.|+
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence            4444567888877666666555543 344333  3344567789999999888765432 23356678888999899999


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 006437          513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSI  571 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  571 (645)
                      +++|..+...|....+. ++.............|-++++...|+++...+.+-+....+
T Consensus       373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~  430 (831)
T PRK15180        373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN  430 (831)
T ss_pred             HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence            99999999888865543 44444444445556788899999999887655443443333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.86  E-value=4.3  Score=23.28  Aligned_cols=25  Identities=8%  Similarity=0.082  Sum_probs=12.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          570 SIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       570 ~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +..+...+.+.|++++|++.+++..
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4444445555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.25  E-value=83  Score=33.81  Aligned_cols=102  Identities=12%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcc
Q 006437          126 LRIYWRGEMYGMVLEAFDEMGRFGFTP---NTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVS  202 (645)
Q Consensus       126 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  202 (645)
                      ++.+.+.+.+++|+.+-+.....  .+   -..+...++..+.-.|++++|-...-.|...+..-|...+..+...++..
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~  440 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT  440 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence            56677788888888877665432  33   34567778888888899999988888888888888888887777777665


Q ss_pred             hHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437          203 NVKDVIGMMVRKGFYPNVRMFEILLNCFCK  232 (645)
Q Consensus       203 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  232 (645)
                      ....+   +.......+...|..++..+..
T Consensus       441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             hhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence            44333   3332223456677777777766

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.01  E-value=30  Score=28.63  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      .++.+++..+++.+.-..|+ ....-..-.-.+...|++++|.++|+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            56666666666666554443 11222222334556677777777777766543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.75  E-value=22  Score=26.93  Aligned_cols=78  Identities=12%  Similarity=0.057  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437          135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK  214 (645)
Q Consensus       135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  214 (645)
                      .++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+....||...|-++-..  +.|--++...-+..|...
T Consensus        21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s   97 (115)
T TIGR02508        21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS   97 (115)
T ss_pred             HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence            45566666665544311 222222333456678888888888888888888887776553  556666666666666665


Q ss_pred             C
Q 006437          215 G  215 (645)
Q Consensus       215 ~  215 (645)
                      |
T Consensus        98 g   98 (115)
T TIGR02508        98 G   98 (115)
T ss_pred             C
Confidence            5

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.74  E-value=88  Score=33.75  Aligned_cols=183  Identities=13%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChH
Q 006437           64 LIALSFFIWCAKQRDYFH--DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQ-----TFLLFLRIYWRGEMYG  136 (645)
Q Consensus        64 ~~A~~~f~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~~  136 (645)
                      ..|++-++.+.+....+|  .+.++-.+..++..-..+++.|...+++.....-.++-.     .-..+++.+.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            356777777665444333  345566667777754788999999988765543222221     1224456666665555


Q ss_pred             HHHHHHHHHhhC----CCCCCHHhHHHH-HHHHHhcCCHhHHHHHHhhcC-----CCCh--hhHHHHHHHHH--hcCCcc
Q 006437          137 MVLEAFDEMGRF----GFTPNTFARNIV-MDVLFKIGRVDLGIKVLKETQ-----LPNF--LSFNIALCNLC--KLNDVS  202 (645)
Q Consensus       137 ~a~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~ll~~~~--~~g~~~  202 (645)
                       |....++.++.    +..+-...+..+ +..+...++...|.+.++.+.     ..|.  ..+-.++.+..  +.+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             88887776633    212223333333 333333478888888887664     2333  23334444433  456667


Q ss_pred             hHHHHHHHHHHCCC---------CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006437          203 NVKDVIGMMVRKGF---------YPNVRMFEILLNCFC--KMGRIAEAYQLLGLMI  247 (645)
Q Consensus       203 ~a~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  247 (645)
                      ++.+.++.+.....         .|-..+|..+++.++  ..|+++.+...++.+.
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777776633211         234556777776665  4566666666655553

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=80.74  E-value=40  Score=29.89  Aligned_cols=155  Identities=16%  Similarity=0.035  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-----hhHHHHHH
Q 006437          119 AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-----LSFNIALC  193 (645)
Q Consensus       119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~  193 (645)
                      ++.||-+.-.+...|+++.|.+.|+...+.+..-+-...|.=|..| --|++..|.+-|-..-..|.     ..|--+..
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E  177 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE  177 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4456666666666777777777777776654222222223222222 24666666665554432221     12222221


Q ss_pred             HHHhcCCcchHHHHHH-HHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC------CcCHHhHHHHHHHH
Q 006437          194 NLCKLNDVSNVKDVIG-MMVRKGFYPNVRMFEILLNCFCK-MGRIAEAYQLLGLMITLGT------SLSVNAWTVLIDGF  265 (645)
Q Consensus       194 ~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~  265 (645)
                         +.-++.+|..-+. +...    .|..-|...|-.+.- .=..+   .+++.+....-      +.=..+|-.+...+
T Consensus       178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence               2233444443332 2222    233333333222211 11111   12222221100      01135677777777


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 006437          266 RRLRRLDMAGYLWEKMVQN  284 (645)
Q Consensus       266 ~~~~~~~~a~~~~~~m~~~  284 (645)
                      ...|+.++|..+|+-....
T Consensus       248 l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         248 LSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            7777777777777776654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.68  E-value=17  Score=31.94  Aligned_cols=73  Identities=11%  Similarity=-0.094  Sum_probs=52.6

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-------CCChhhHHHHHHHHHhcCCcch
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-------LPNFLSFNIALCNLCKLNDVSN  203 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~  203 (645)
                      +.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..       ..|+..+..|++.+.+.|+++.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3355 678888888887776666666667666666 567777777776542       4667788888888888888887


Q ss_pred             HH
Q 006437          204 VK  205 (645)
Q Consensus       204 a~  205 (645)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            74

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=80.38  E-value=23  Score=29.24  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=39.5

Q ss_pred             HHHHHHHHhcCCHhHHHHHHhhcC---------CCChhhHHHHHHHHHhcCC-cchHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          158 NIVMDVLFKIGRVDLGIKVLKETQ---------LPNFLSFNIALCNLCKLND-VSNVKDVIGMMVRKGFYPNVRMFEILL  227 (645)
Q Consensus       158 ~~ll~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll  227 (645)
                      |.++.-....+++.....+++.+.         ..+..+|++++.+...... --.+..+|+.|.+.+.+++..-|..++
T Consensus        43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li  122 (145)
T PF13762_consen   43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI  122 (145)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            444544444455555444444432         1233456666665544333 224455666666655666666666666


Q ss_pred             HHHHhc
Q 006437          228 NCFCKM  233 (645)
Q Consensus       228 ~~~~~~  233 (645)
                      .++.+.
T Consensus       123 ~~~l~g  128 (145)
T PF13762_consen  123 KAALRG  128 (145)
T ss_pred             HHHHcC
Confidence            665544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.21  E-value=2.9  Score=24.11  Aligned_cols=24  Identities=17%  Similarity=-0.022  Sum_probs=10.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          501 TVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       501 ~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      ..+...|...|++++|...|++..
T Consensus         5 ~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    5 YNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333444444444444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	645
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 4e-11
 Identities = 104/638 (16%), Positives = 197/638 (30%), Gaps = 200/638 (31%)

Query: 24  SFKSIHQISSPKV-----CATTHQDFP--IILAPHIVHSTLLNCPSDLIALSFFIW--CA 74
            +K I  +          C    QD P  I+    I H  ++     +       W   +
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLS 73

Query: 75  KQ----RDYFHDVQSFDH-----MISVVTR----LTGRFETVRGIV---------GELAR 112
           KQ    + +  +V   ++      I    R    +T  +   R  +           ++R
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 113 VGCVIKAQTFLLFLRIYWRGE---MYGM-----------VLEAFDEMGRFGFTPNTFARN 158
           +   +K +  LL LR     +   + G+           V  ++    +  F        
Sbjct: 134 LQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-------K 183

Query: 159 IVMDVLF--KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVS--------NVKDVI 208
           I     F   +   +    VL+  Q    L + I   N    +D S        +++  +
Sbjct: 184 I-----FWLNLKNCNSPETVLEMLQK---LLYQID-PNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 209 GMMVRKGFYP-------NVRMFEILLNCF---CKMGRIAEAYQLLGLMIT----LGTSLS 254
             +++   Y        NV+  +   N F   CK+           L+ T    +   LS
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKI-----------LLTTRFKQVTDFLS 282

Query: 255 VNAWTVLI-----DGFRRLRRLDM-AGYLWEKMVQ-----NGCSPNVVTYTSLIKGFME- 302
               T +                +   YL  +           +P  +   S+I   +  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRD 339

Query: 303 -------------AKMFSIAFSFLDMLESEGHAP---DL-VF-HNVLI--DCLSKM---G 339
                         K+ +I  S L++LE   +      L VF  +  I    LS +    
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 340 SYDDALDVYDGLLELKLV---PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL---V 393
              D + V + L +  LV   P   T  S+          S+  +L   LE E  L   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKEST-ISIP---------SIYLELKVKLENEYALHRSI 449

Query: 394 V--YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY--SFVGL-LRGLCGARKIDEAIN 448
           V  YN   ++      P                 D Y  S +G  L+ +    ++     
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL--------------DQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 449 VY-------QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYT 501
           V+       Q I  ++ A NA    +I++ L +       ++ ++  I +  P     Y 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQ-------LKFYKPYICDNDP----KYE 542

Query: 502 VAIRGLLEGGRTEEAYIL---YSQMKHIAV-PPNAYTY 535
             +  +L+     E  ++   Y+ +  IA+   +   +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 70/475 (14%), Positives = 146/475 (30%), Gaps = 129/475 (27%)

Query: 59  NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIK 118
           N P  ++ +        Q+  +    ++       + +  R  +++    EL R+   +K
Sbjct: 193 NSPETVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRL---LK 239

Query: 119 AQTF---LLFLRIYWRGEMYGMVLEAFDEMGRFG----FTPNTFARNI-VMDVL----FK 166
           ++ +   LL L      +       AF+           T  T  R   V D L      
Sbjct: 240 SKPYENCLLVLLNVQNAK----AWNAFN----LSCKILLT--T--RFKQVTDFLSAATTT 287

Query: 167 IGRVDLGIKVLKETQLPNFLS--FNIALCNL----CKLNDVSNVKDVIGMMVRKG----- 215
              +D     L   ++ + L    +    +L       N       +I   +R G     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATWD 345

Query: 216 FYPNV------RMFEILLNCFCKMGRIAEAYQLLGLM-----ITLGTSLSVNAWTVLIDG 264
            + +V       + E  LN   +     + +  L +      I     LS+         
Sbjct: 346 NWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL-LSL--------- 394

Query: 265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTY---TSLIKGFMEAKMFSIAFSFLDMLESEGH 321
                       +W  ++++     VV      SL++   +    SI   +L++     +
Sbjct: 395 ------------IWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 322 APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSL---LSTVCLSGRFSL 378
              L  H  ++D  +   ++D      D L+   L  D Y +  +   L  +    R +L
Sbjct: 442 EYAL--HRSIVDHYNIPKTFD-----SDDLIPPYL--DQYFYSHIGHHLKNIEHPERMTL 492

Query: 379 LPKLVCGLE-VEADLVVYNALLSYFCKAGFPN--QAVKLYNTMLDKGFTPDNYSFVGLLR 435
              +      +E  +   +   ++       N  Q +K Y          ++  +  L+ 
Sbjct: 493 FRMVFLDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYK----PYICDNDPKYERLVN 546

Query: 436 GL------CGARKI-DEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ 483
            +           I  +  ++ + I +           AI +   EA   HK +Q
Sbjct: 547 AILDFLPKIEENLICSKYTDLLR-IALMAE------DEAIFE---EA---HKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 52/383 (13%), Positives = 107/383 (27%), Gaps = 95/383 (24%)

Query: 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF-----HNVLIDCLSKMGSY 341
           S + V+ T  +   + +K   +   F++    E    +  F                  Y
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE----EVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKL---VCGLEVEADLVVY--- 395
            +  D        +L  D+  F      V    R     KL   +  L    ++++    
Sbjct: 113 IEQRD--------RLYNDNQVFAKY--NVS---RLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 396 ---------NALLSYFCKAGFPNQA----VKLYNT------MLDKGFTPDNYSFVGLLRG 436
                    +  LSY  +     +     +K  N+      ML K     + ++      
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 437 LCGAR-KIDEAINVYQGIVMNNPAVNAHVHTAIVD-----RLIEA--GRCHKAIQLFRRA 488
               + +I       + ++ + P  N  +   ++      +   A    C K +   R  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSC-KILLTTRFK 275

Query: 489 IVEKYPLDVVSYTVAIRGLLEGGR-------TEEAYILYSQMKHIAVPPNAYTYRVMLLS 541
            V     D +S        L+           +   + Y   +   +P    T     LS
Sbjct: 276 QV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPD 601
                   ++   ++D +      D           +K H +   +  ++E     L P 
Sbjct: 332 --------IIAESIRDGLA-TW--DN----------WK-HVNCDKLTTIIESSLNVLEPA 369

Query: 602 EM---WRKLGLLSDETMTPVSLF 621
           E    + +L +       P  L 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 88/636 (13%), Positives = 182/636 (28%), Gaps = 173/636 (27%)

Query: 41  HQDFPIILAPHIVHSTLLNCPSDLIA--LSFFIWCAKQRDY-FHDVQSFDHMISVVTRLT 97
           H DF                  D+++     F+      ++   DVQ  D   S++++  
Sbjct: 6   HMDFET--------GEHQYQYKDILSVFEDAFV-----DNFDCKDVQ--DMPKSILSK-- 48

Query: 98  GRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE-MYGMVLEAFDE------MGRFGF 150
              E +  I+     V     + T  LF  +  + E M    +E          M     
Sbjct: 49  ---EEIDHIIMSKDAV-----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 151 TPNTFARNIVM-----DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVK 205
                +    M     D L+   +V     V   ++L  +L    AL    +L    NV 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALL---ELRPAKNVL 154

Query: 206 DVIGMMVRKGF------------YPNVRMFEILLNCF-CKMGRIAEAYQLLGLMITLGTS 252
            + G+    G             Y      +     F   +        +L ++  L   
Sbjct: 155 -IDGV---LGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 253 LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF 312
           +  N WT   D    ++                    + +  + ++  +++K +      
Sbjct: 209 IDPN-WTSRSDHSSNIKL------------------RIHSIQAELRRLLKSKPYENCLLV 249

Query: 313 LDMLESEGHAPDLVFH-NVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFC-----SL 366
           L  +++            +L+   ++     D L        + L   S T       SL
Sbjct: 250 LLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSL 306

Query: 367 LSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TP 425
           L    L  R   LP+ V                        P + + +    +  G  T 
Sbjct: 307 LLK-YLDCRPQDLPREVLT--------------------TNP-RRLSIIAESIRDGLATW 344

Query: 426 DNYSFVGLLRGLCGARKIDEAINV---------YQGIVMNNPAVNAHVHTAIVDRLIEAG 476
           DN+  V   + L     I+ ++NV         +  + +  P+ +           I   
Sbjct: 345 DNWKHVNCDK-L--TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----------IPT- 389

Query: 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR 536
                + L    +++   + VV+  +    L+E              K     P   T  
Sbjct: 390 ---ILLSLIWFDVIKSDVMVVVN-KLHKYSLVE--------------KQ----PKESTIS 427

Query: 537 VMLLSF---CKERNIKMV-KRLL-QDVIDARIELDYHTSIRLTKFIFKF---HSSSSAVN 588
           +  +      K  N   + + ++    I    + D      L ++ +     H  +    
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 589 QLVEMCNLGLIPDEMW--RKLGLLSDETMTPVSLFD 622
           + + +  + +  D  +  +K+   S       S+ +
Sbjct: 488 ERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILN 522

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.4 bits (147), Expect = 7e-10
 Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 7/182 (3%)

Query: 261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES-- 318
           L+        LD+      +  Q   S       +  K  +      +A   L +     
Sbjct: 98  LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157

Query: 319 -EGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS 377
            +     L  +N ++   ++ G++ + + V   + +  L PD  ++ + L  +    + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 378 LLPKLV----CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGL 433
              +          ++   +    LLS   +A       K+  T       P   +   L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277

Query: 434 LR 435
           LR
Sbjct: 278 LR 279

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.6 bits (145), Expect = 1e-09
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 218 PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL 277
           P       LL        +       G       S                 +L +A +L
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 278 ---WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC 334
                   Q      +  Y +++ G+     F      L M++  G  PDL+ +   + C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 335 LSKMGSYDDALDVY 348
           + +       ++  
Sbjct: 210 MGRQDQDAGTIERC 223

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 57.5 bits (137), Expect = 1e-08
 Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 8/175 (4%)

Query: 158 NIVMDVLFKIGRVDLGIKVL-------KETQLPNFLSFNIALCNLCKLNDVSNVKDVIGM 210
                      ++ L   +L       ++ +L     +N  +    +      +  V+ M
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ-LLGLMITLGTSLSVNAWTVLIDGFRRLR 269
           +   G  P++  +   L C  +  + A   +  L  M   G  L      VL+    R  
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 270 RLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD 324
            L     +          P  V  + L++                 L++     +
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 56.4 bits (134), Expect = 2e-08
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 451 QGIVMNNPAVNAHVHT-AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE 509
             +      + A      + D+L      H  + +      ++  L +  Y   + G   
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQL---PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK-ERNIKMVKRLLQDVIDARIELDYH 568
            G  +E   +   +K   + P+  +Y   L    + +++   ++R L+ +    ++L   
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237

Query: 569 TS 570
            +
Sbjct: 238 FT 239

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.4 bits (129), Expect = 9e-08
 Identities = 27/212 (12%), Positives = 63/212 (29%), Gaps = 9/212 (4%)

Query: 352 LELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE------VEADLVVYNALLSYFCKA 405
            + +L        +      L+ +  L   L+              L +YNA++  + + 
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178

Query: 406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH 465
           G   + V +   + D G TPD  S+   L+ +    +    I      +         + 
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238

Query: 466 TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525
           TA++    +     KA     +          +   V    LL     ++  + Y ++  
Sbjct: 239 TAVLLSEEDRATVLKA---VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295

Query: 526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQD 557
                     + + +       +  V++    
Sbjct: 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLP 327

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 34/266 (12%), Positives = 73/266 (27%), Gaps = 47/266 (17%)

Query: 323 PDLV-FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPK 381
            D           L K G  D+A D +  +L+    P         S +           
Sbjct: 68  MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQL----------- 114

Query: 382 LVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC--G 439
               ++ +    + +  L  F        A+   + +L+      +      LR  C   
Sbjct: 115 ----VKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVC--VWDAELR-ELRAECFIK 166

Query: 440 ARKIDEAINVY-QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI--------- 489
             +  +AI+       + +    A    + +    + G    ++   R  +         
Sbjct: 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTL--YYQLGDHELSLSEVRECLKLDQDHKRC 224

Query: 490 --VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN 547
               K    +     +   L+  GR  +A   Y  +  +   P+   Y V          
Sbjct: 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV--MKTEPSVAEYTVRSKE-----R 277

Query: 548 IKMVKRLLQDVIDARIELDYHTSIRL 573
           I       +  ++A I       +++
Sbjct: 278 ICHCFSKDEKPVEA-IR-ICSEVLQM 301

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 28/190 (14%)

Query: 322 APDLV-FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRF--- 376
                    +  +C  K G    A+       +LK   D+      +ST+    G     
Sbjct: 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELS 207

Query: 377 --------SLLPKLV---CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP 425
                    L           +    L           + G    A   Y +++     P
Sbjct: 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEP 265

Query: 426 DNYSFVGLL---RGLCGAR--KIDEAINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCH 479
               +          C ++  K  EAI +   ++   P  VNA    A     +      
Sbjct: 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA--YLIEEMYD 323

Query: 480 KAIQLFRRAI 489
           +AIQ +  A 
Sbjct: 324 EAIQDYEAAQ 333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 15/221 (6%)

Query: 323 PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRFSLLPK 381
           P+L    +  + L+     D  +   D  +   +   + TF  + +++           +
Sbjct: 63  PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122

Query: 382 LVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC--- 438
               L     L      +    K    + A K    M D+    D      L        
Sbjct: 123 T---LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL-TQLATAWVSLA 176

Query: 439 -GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV 497
            G  K+ +A  ++Q +          +        +  GR   A  + + A+ +K     
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEAL-DKDSGHP 234

Query: 498 VSYTVAIRGLLEGGRTEEAYILY-SQMKHIAVPPNAYTYRV 537
            +    +      G+  E    Y SQ+K      + +    
Sbjct: 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIKEY 274

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 30/255 (11%), Positives = 73/255 (28%), Gaps = 45/255 (17%)

Query: 339 GSYDDALDVYDGLL----ELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVV 394
           GSY   ++    +     E  +  D + + + L+      ++ ++   +       +L  
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA----QRKYGVVLDEIKP-SSAPELQA 67

Query: 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR------------- 441
                 Y       +  V   +  + +     N +F+ L+                    
Sbjct: 68  VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL-LMAASIYFYDQNPDAALRTLHQ 126

Query: 442 ------------------KIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAI 482
                             ++D A    + +   +  A    + TA V       +   A 
Sbjct: 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186

Query: 483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR-VMLLS 541
            +F+    +K    ++         +  GR E A  +  +        +  T   +++LS
Sbjct: 187 YIFQEMA-DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLS 244

Query: 542 FCKERNIKMVKRLLQ 556
               +  ++  R L 
Sbjct: 245 QHLGKPPEVTNRYLS 259

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 20/179 (11%), Positives = 44/179 (24%), Gaps = 33/179 (18%)

Query: 316 LESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR 375
           L +      L    + +  L K+   D A      + +     D+               
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDA--------------- 163

Query: 376 FSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435
                             +  A +S          A  ++  M DK  +P      G   
Sbjct: 164 --------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAA 208

Query: 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP 494
                 + + A  V Q  +  +   +      +V      G+  +    +   + + + 
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 48/272 (17%)

Query: 334 CLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRF-----------SLLPK 381
               MG    AL     +++LK   D          + L  G+               P 
Sbjct: 69  VFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 382 LVCGLEVEADLVVYNALLSYFCKA------GFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435
                E ++ L+  + +     +A      G    A+   + +L+      +      LR
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELR-ELR 183

Query: 436 GLC--GARKIDEAINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAI--- 489
             C     +  +AI+  +           A    + +    + G    ++   R  +   
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL--YYQLGDHELSLSEVRECLKLD 241

Query: 490 --------VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541
                     K    +     +   L+  GR  +A   Y  +  +   P+   Y V    
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV--MKTEPSIAEYTVRSKE 299

Query: 542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRL 573
                 I       +  ++A I       +++
Sbjct: 300 -----RICHCFSKDEKPVEA-IR-VCSEVLQM 324

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 39/261 (14%)

Query: 335 LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRFSL-LPKLVCGLEVEADL 392
           L   G   DAL  +   ++    PD+Y      +TV L+ G+    LP L   ++++ D 
Sbjct: 36  LLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

Query: 393 V-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN----------------YSFVGLLR 435
                       K G  ++A   +  +L     P                          
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQAL 151

Query: 436 GLCGARKIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP 494
              G+     AI     I+             A     I+ G   KAI   + A  +   
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAAS-KLKN 208

Query: 495 LDVVSYTVAIRG--LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVK 552
            +  ++          + G  E +     +   +    +   +          + +K + 
Sbjct: 209 DNTEAFYK--ISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY-------KQVKKLN 258

Query: 553 RLLQDVIDARIELDYHTSIRL 573
           +L++   +   +  Y  +   
Sbjct: 259 KLIESAEELIRDGRYTDATSK 279

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 56/328 (17%), Positives = 92/328 (28%), Gaps = 58/328 (17%)

Query: 228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLD-MAGYLWEKMVQNGC 286
           +   K G++ EA                       D F+++ + +       E   Q   
Sbjct: 102 HLLLKQGKLDEA----------------------EDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDM-LESEGHAPDLVFHNVLIDCLSKMGSYDDAL 345
           S  +    S       +  ++ A +FLD  LE      +L    +  +C  K G    A+
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL--RELRAECFIKEGEPRKAI 197

Query: 346 DVYDGLLELKLVPDSYTFCSLLSTV-CLSGRF-----------SLLPKLV---CGLEVEA 390
                  +LK   D+      +ST+    G              L           +   
Sbjct: 198 SDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255

Query: 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL---RGLC--GARKIDE 445
            L           + G    A   Y +++     P    +          C     K  E
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 446 AINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504
           AI V   ++   P  VNA    A     +      +AIQ +  A  E       +     
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEA--YLIEEMYDEAIQDYETAQ-EHNE----NDQQIR 366

Query: 505 RGLLEGGRTEEAYILYSQMKHIAVPPNA 532
            GL +  R  +        K + V  NA
Sbjct: 367 EGLEKAQRLLKQSQKRDYYKILGVKRNA 394

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 43/322 (13%), Positives = 89/322 (27%), Gaps = 55/322 (17%)

Query: 228 NCFCKMGRIAEA---YQLLGLMITLGTSLSVN-----AWTVLIDGFRRLRRLDMAGYLWE 279
            C+   G + +                +L +      A          L     A     
Sbjct: 67  ACYISTGDLEKVIEFTT---------KALEIKPDHSKALLRRASANESLGNFTDA----- 112

Query: 280 KMVQNGCSPNVVTYT--SLIKGFMEAKMFSIAFSFLDMLESEGHAPDL-VFHNVLIDCLS 336
                     +   +  SL   F  A +  +    L+    +    +L          L 
Sbjct: 113 ----------MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162

Query: 337 KMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYN 396
              S      ++D  LE+  V  S  +            ++LL   +  L    D     
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNY---------DTAYALLSDALQRLYSATDEGYLV 213

Query: 397 ALLSYFCKAGFPNQAVKLYNTMLD-KGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM 455
           A           +  +         +        + G+   L     + +A  + Q  + 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN--NLLDAQVLLQESIN 271

Query: 456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG--LLEGGRT 513
            +P  N+++  A+   L +     +  + F++A+ +  P    +Y    RG         
Sbjct: 272 LHPTPNSYIFLALT--LADKENSQEFFKFFQKAV-DLNPEYPPTYY--HRGQMYFILQDY 326

Query: 514 EEAYILYSQMKHIAVPPNAYTY 535
           + A   + + + +  P N Y Y
Sbjct: 327 KNAKEDFQKAQSLN-PENVYPY 347

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 13/201 (6%)

Query: 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL-RGLCGARKIDEAINVYQG 452
             N L +   + G   +AV+LY   L+    P+  +    L   L    K+ EA+  Y+ 
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 453 IVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR 512
            +  +P   A  ++ + + L E      A+Q + RAI    P    +++       + G 
Sbjct: 69  AIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN 126

Query: 513 TEEAYILYSQMKHIAVP--PNAYTYRVMLLSF-CK-ERNIKMVKRLLQDVIDARIELDYH 568
             EA   Y     +  P  P+AY      L   C      + +K+L+  V D    L+ +
Sbjct: 127 IPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ---LEKN 182

Query: 569 TSIRLTKFIFKFHSSSSAVNQ 589
               +       +  S    +
Sbjct: 183 RLPSVHPHHSMLYPLSHGFRK 203

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 43/208 (20%)

Query: 306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCS 365
            +  + + ++ ++   +  L     L     K  +YD A   Y  LL+    P+      
Sbjct: 37  RTEMYYWTNVDKNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQKA--PN------ 86

Query: 366 LLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP 425
                                    ++    A        G    A+++Y  +L      
Sbjct: 87  -------------------------NVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEA 119

Query: 426 DN---YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI 482
           DN     F+G    L    +  + +      + +      +         +   R  KA 
Sbjct: 120 DNLAANIFLGNYYYLTA-EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKAR 177

Query: 483 QLFRRAIVEKYPLDVVSYTVAIRGLLEG 510
              ++ I  ++P      T+     +E 
Sbjct: 178 NSLQKVI-LRFPSTEAQKTLDKILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 14/173 (8%)

Query: 395 YNALLSYFCKA--GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQG 452
               +SYF +      ++    Y T +DK     +     L       R  D+A   Y+ 
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 453 IVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL--- 508
           ++   P  V+     A +   +  G+   A++++ + + +    ++ +      G     
Sbjct: 80  LLQKAPNNVDCLEACAEM--QVCRGQEKDALRMYEKIL-QLEADNLAANI--FLGNYYYL 134

Query: 509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560
              + ++        K ++ P    Y      LS       +  +  LQ VI 
Sbjct: 135 TAEQEKKKLETDY--KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 25/206 (12%), Positives = 58/206 (28%), Gaps = 29/206 (14%)

Query: 335 LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVV 394
             + G    A+  +   + L    D                  +          E    +
Sbjct: 14  AIEAGQNGQAVSYFRQTIALN--IDR---------------TEMYYWTNVDKNSEISSKL 56

Query: 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKIDEAINVYQ 451
              L   + K    ++A   Y  +L K   P+N         ++   G  +  +A+ +Y+
Sbjct: 57  ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRG--QEKDALRMYE 112

Query: 452 GIVMNNPAVNAHVHTAIVDRLIEAG-RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG 510
            I+      N   +  + +       +  K ++   + +         +        L  
Sbjct: 113 KILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFT 170

Query: 511 GRTEEAYILYSQMKHIAVPPNAYTYR 536
            R E+A     ++  I   P+    +
Sbjct: 171 TRYEKARNSLQKV--ILRFPSTEAQK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 404 KAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMNNPA- 459
           +AG    A +    +  +   PDN      +  +      R++D + +     +  NP  
Sbjct: 11  QAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSI--HFQCRRLDRSAHFSTLAIKQNPLL 66

Query: 460 VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG--LLEGGRTEEAY 517
             A+ +   V    E G+  +AI+ +R A+    P  +  Y        L+  G  E A 
Sbjct: 67  AEAYSNLGNV--YKERGQLQEAIEHYRHAL-RLKPDFIDGYI--NLAAALVAAGDMEGAV 121

Query: 518 ILYSQ 522
             Y  
Sbjct: 122 QAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 48/201 (23%)

Query: 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE 387
           ++ L +   + G   +A++ Y   L LK  PD                            
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALRLK--PDF--------------------------- 100

Query: 388 VEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKID 444
           ++     Y  L +    AG    AV+ Y + L   + PD     S +G L  L    +++
Sbjct: 101 IDG----YINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNL--LKALGRLE 152

Query: 445 EAINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVA 503
           EA   Y   +   P    A  +   V      G    AI  F +A+    P  + +Y   
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIHHFEKAV-TLDPNFLDAYI-- 207

Query: 504 IRG--LLEGGRTEEAYILYSQ 522
             G  L E    + A   Y +
Sbjct: 208 NLGNVLKEARIFDRAVAAYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 57/304 (18%), Positives = 100/304 (32%), Gaps = 53/304 (17%)

Query: 226 LLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG 285
           L +   + G    A +    +       +     +L     + RRLD + +     ++  
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61

Query: 286 CSPNVV-TYTSLIKGFMEAKMFSIAFSFLDM-LESEGHAPDLV-FHNVLIDCLSKMGSYD 342
            +P +   Y++L   + E      A       L  +   PD +  +  L   L   G  +
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGDME 118

Query: 343 DALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRFSLLPKLVCGLEVEADLVVYNALLSY 401
            A+  Y   L+    PD Y   S L  +  + GR             EA    Y   +  
Sbjct: 119 GAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLE-----------EA-KACYLKAIET 164

Query: 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-V 460
                 PN AV   N     G          +        +I  AI+ ++  V  +P  +
Sbjct: 165 -----QPNFAVAWSN----LG---------CVFNAQ---GEIWLAIHHFEKAVTLDPNFL 203

Query: 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG--LLEGGRTEEAYI 518
           +A+++   V  L EA    +A+  + RA+    P   V +          E G  + A  
Sbjct: 204 DAYINLGNV--LKEARIFDRAVAAYLRAL-SLSPNHAVVHGN--LACVYYEQGLIDLAID 258

Query: 519 LYSQ 522
            Y +
Sbjct: 259 TYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 64/323 (19%), Positives = 111/323 (34%), Gaps = 66/323 (20%)

Query: 228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS 287
           +   +  R+  +     L I     L   A++ L + ++   +L  A   +   ++    
Sbjct: 41  SIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LK 97

Query: 288 PNVV-TYTSLIKGFMEAKMFSIAF-SFLDMLESEGHAPDLV-FHNVLIDCLSKMGSYDDA 344
           P+ +  Y +L    + A     A  +++  L+     PDL    + L + L  +G  ++A
Sbjct: 98  PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEA 154

Query: 345 LDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRFSLLPKLVCGLEVEADLVVYNALLSYFC 403
              Y   +E +  P+     S L  V  + G   L                  A+  +  
Sbjct: 155 KACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWL------------------AIHHF-- 192

Query: 404 KAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMNNPA- 459
                 +AV L          P+    Y  +G +  L  AR  D A+  Y   +  +P  
Sbjct: 193 -----EKAVTLD---------PNFLDAYINLGNV--LKEARIFDRAVAAYLRALSLSPNH 236

Query: 460 VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYT---VAIRGLLEGGRTEEA 516
              H + A V    E G    AI  +RRAI  + P    +Y     A   L E G   EA
Sbjct: 237 AVVHGNLACV--YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA---LKEKGSVAEA 290

Query: 517 YILYSQMKHIAVPPN---AYTYR 536
              Y+    + + P    +    
Sbjct: 291 EDCYNTA--LRLCPTHADSLNNL 311

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 26/241 (10%)

Query: 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL 352
           Y   +           A  +L  +     + DL       D L     + D L +   +L
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITTKIL 332

Query: 353 ELKLVPDSYTFCSLLSTVCLS--GRFSLLPKLVCGLEVEAD---LVVYNALLSYFCKAGF 407
           E+   P +     L     L   G  + L  +   L V+      V + A+  Y+     
Sbjct: 333 EID--PYNLDVYPLHLA-SLHESGEKNKLYLISNDL-VDRHPEKAVTWLAVGIYYLCVNK 388

Query: 408 PNQAVKLYN--TMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVY-QGIVMNNPAVNAHV 464
            ++A + ++  + +D  F P    F      + G  + D+AI+ Y     +       ++
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGF-AHSFAIEG--EHDQAISAYTTAARLFQGTHLPYL 445

Query: 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYT---VAIRGLLEGGRTEEAYILYS 521
              +    ++ G    A +  + +    +  D +      V           + A   + 
Sbjct: 446 FLGMQ--HMQLGNILLANEYLQSSY-ALFQYDPLLLNELGVV---AFNKSDMQTAINHFQ 499

Query: 522 Q 522
            
Sbjct: 500 N 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 41/310 (13%), Positives = 84/310 (27%), Gaps = 55/310 (17%)

Query: 287 SPNVVTYTSLIKGFMEAKMFSIAFS-FLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDAL 345
             +                F    +    +LE + +  D+  + + +  L + G  +   
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV--YPLHLASLHESGEKNKLY 359

Query: 346 DVYDGLLELKLVPDSYTFCSLLSTVCLS-GRF-----------SLLPKLVCGLEVEADLV 393
            + + L++    P+       +    L   +            ++ P+        A   
Sbjct: 360 LISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-----PA--- 409

Query: 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKIDEAINVY 450
            +      F   G  +QA+  Y T             Y F+G+     G   I  A    
Sbjct: 410 -WIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLG--NILLANEYL 464

Query: 451 QGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAI--VEKYPLDVVSYTVAI--R 505
           Q                 +V           AI  F+ A+  V+K   +   +       
Sbjct: 465 QSSYALFQYDPLLLNELGVV--AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522

Query: 506 G--LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563
           G    +    + A    +Q   ++   +A  +            I +V    +    A I
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVH----------TAIALVYLHKKIPGLA-I 570

Query: 564 ELDYHTSIRL 573
               H S+ +
Sbjct: 571 T-HLHESLAI 579

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/253 (12%), Positives = 60/253 (23%), Gaps = 27/253 (10%)

Query: 324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRFS-LLPK 381
            +V           + +    L V      L   P+     +       +      LLP 
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALETVQALLPV 162

Query: 382 LVCGLEVE-ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-SFVGLLRGLCG 439
           L     +    +V   +            + + +       G TP    +      G   
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQA 220

Query: 440 ARKIDEAINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498
              +   + V        P  V A                 + + +  +A     P  VV
Sbjct: 221 LETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLLPVLCQAH-GLTPQQVV 277

Query: 499 SYTVAIRG--LLEGGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKERNIKMVKR 553
           +   A            +    L    +   + P    A             + ++ V+R
Sbjct: 278 AI--ASNSGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNGGGK-----QALETVQR 328

Query: 554 LLQDVIDARIELD 566
           LL  +  A   L 
Sbjct: 329 LLPVLCQA-HGLT 340

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 48/330 (14%), Positives = 95/330 (28%), Gaps = 58/330 (17%)

Query: 224 EILLN---CFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEK 280
           +++++              Y+L  +++        +   V I     L + +   YL  K
Sbjct: 23  DVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHK 81

Query: 281 MVQNGCSPNV--------VTYTSLIKGFMEA-KMFSIAFSFLDMLESEGHAPDLV-FHNV 330
           +V     P+           Y  +      A +  S A + L+                 
Sbjct: 82  LVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT-LE--------KTYGPAWIA 130

Query: 331 LIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS-GRF-----------SL 378
                +    +D A+  Y    +L      +     +                     S+
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 379 LPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYN------TMLDKGFTPDNYSFVG 432
            P+         D  V + +     + G    A K +         +    T D +  + 
Sbjct: 189 APE---------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239

Query: 433 LLRG--LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV 490
              G      +K  EA++ ++  ++  P  NA  ++AI       G    A+  F  A+ 
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298

Query: 491 EKYPLDVVSYTVAIRGLLEGGRTEEAYILY 520
            +   D  S T+    +       EAYI  
Sbjct: 299 LR-RDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 48/307 (15%), Positives = 76/307 (24%), Gaps = 26/307 (8%)

Query: 226 LLNCFCKMGRIAEA----YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKM 281
                  +  +        Q  GL         V A    I G + L  +     +  + 
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGL-----PPDQVVAIASNIGGKQALETVQRLLPVLCQA 286

Query: 282 VQNGCSPN-VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF-HNVLIDCLSKMG 339
              G +P+ VV   S   G    +        L   ++ G  PD V            + 
Sbjct: 287 H--GLTPDQVVAIASHGGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHDGGKQALE 342

Query: 340 SYDDALDVYDGLLELKLVPDSY-TFCSLLSTVCLSGRF-SLLPKLVCGLEVEADLVVYNA 397
           +    L V      L   PD      S             LLP L     +  D VV  A
Sbjct: 343 TVQRLLPVLCQAHGLT--PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 400

Query: 398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-SFVGLLRGLCGARKIDEAINVY-QGIVM 455
                       + + +       G TPD   +      G      +   + V  Q   +
Sbjct: 401 SNGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGL 458

Query: 456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE 515
               V A                 + + +  +A        VV+    I G       + 
Sbjct: 459 TPAQVVAIASHDGG--KQALETVQQLLPVLCQAHGLTPD-QVVAIASNIGGKQALATVQR 515

Query: 516 AYILYSQ 522
              +  Q
Sbjct: 516 LLPVLCQ 522

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 27/211 (12%), Positives = 46/211 (21%), Gaps = 43/211 (20%)

Query: 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE 387
                     + +    L V      L   PD     +                      
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLP--PDQVVAIASNIG------------------ 268

Query: 388 VEADLVVYNALLSYFCKAGF--PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE 445
            +  L     LL   C+A    P+Q V + +     G         G  + L     +  
Sbjct: 269 GKQALETVQRLLPVLCQAHGLTPDQVVAIAS----HG---------GGKQAL---ETVQR 312

Query: 446 AINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504
            + V        P  V A                 + + +  +A     P  VV+     
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGG--KQALETVQRLLPVLCQAHGLT-PDQVVAIASNG 369

Query: 505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTY 535
            G       +    +  Q   +  P      
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLT-PDQVVAI 399

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 406 GFPNQAVKLYNTMLDKGFTPDNY--SFVGL---LRGLCGARKIDEAINVYQGIVMNNP-A 459
           G   QAV  Y   +  G    +    ++GL    R L    +  +A  V    V   P  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNH 60

Query: 460 VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIR 505
               V  A+V  L   GR  + ++L  + I E      + SY  AI 
Sbjct: 61  QALRVFYAMV--LYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 3/96 (3%)

Query: 422 GFTPDNY-SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHK 480
               D                +I+EA   ++ + + +   N      +        +  +
Sbjct: 30  AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQ 88

Query: 481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516
           A  L+  A       D        +  L      +A
Sbjct: 89  AADLYAVAF-ALGKNDYTPVFHTGQCQLRLKAPLKA 123

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 29/247 (11%), Positives = 67/247 (27%), Gaps = 29/247 (11%)

Query: 338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC-LSGRFSL-LPKLVCGLEVEADLVVY 395
              +++ LD  +   +LK                 L          +   +E+   +  Y
Sbjct: 216 ARLFEEQLDKNNEDEKLK--EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273

Query: 396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN---YSFVGLLRGLCGARKIDEAINVYQG 452
             +           +    ++  L      +N   Y   G +  +      D+A   +  
Sbjct: 274 IYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQ--NYDQAGKDFDK 329

Query: 453 IVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG--LLE 509
               +P  +  ++  A +       +      LF  A   K+P              L +
Sbjct: 330 AKELDPENIFPYIQLACL--AYRENKFDDCETLFSEAK-RKFPEAPEVPN--FFAEILTD 384

Query: 510 GGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD 566
               ++A   Y     I +       Y     L+    +  +      +++ I+A     
Sbjct: 385 KNDFDKALKQYDLA--IELENKLDGIYVGIAPLVG---KATLLTRNPTVENFIEA-TN-L 437

Query: 567 YHTSIRL 573
              + +L
Sbjct: 438 LEKASKL 444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 32/159 (20%)

Query: 334 CLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLV 393
            + +   +D+ L   D LL+      + +          + R+ ++              
Sbjct: 209 VIQEFKLWDNELQYVDQLLKED--VRNNS--------VWNQRYFVISN------------ 246

Query: 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI 453
                 + +       + V+    M+     P N S    L+G+   R + +  N+   +
Sbjct: 247 -----TTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQL 299

Query: 454 VMNNPAV-NAHVHTAIVDRLIEA--GRCHKAIQLFRRAI 489
           +   P+  + ++   +VD   +    +C     +  +A+
Sbjct: 300 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 422 GFTPDNY-SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHK 480
           G + D       L      A K D+A  ++Q + M +   +A     +       G   +
Sbjct: 12  GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQ 70

Query: 481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516
           A+Q +          +      A    L+ G  + A
Sbjct: 71  ALQSYSYGA-LMDINEPRFPFHAAECHLQLGDLDGA 105

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 31/205 (15%), Positives = 54/205 (26%), Gaps = 62/205 (30%)

Query: 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSY--------TFCSLLSTVCLSGRFSLL 379
             V  +    +   D A + +   L +K  PDS           C  L       R +  
Sbjct: 45  WLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRL------NRPA-- 94

Query: 380 PKLVCGLEVEADLVVYNALLSYFCKA----GFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435
                    E+        ++YF KA     +P   +   N                  +
Sbjct: 95  ---------ES--------MAYFDKALADPTYPTPYIANLN------------------K 119

Query: 436 GLC--GARKIDEAINVY-QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492
           G+C     +   A     + +        A    A     + AG+   A   F++     
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART--KMLAGQLGDADYYFKKYQSRV 177

Query: 493 YPLDVVSYTVAIRGLLEGGRTEEAY 517
             L      +  +     G  + AY
Sbjct: 178 EVLQADDLLLGWKIAKALGNAQAAY 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	645
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.42
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.32
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.32
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.21
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.0
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.95
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.95
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.94
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.93
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.81
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.81
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.74
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.56
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.43
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.39
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.38
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.37
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.33
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.3
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.26
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.24
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.23
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.2
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.18
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.07
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.02
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.99
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.91
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.89
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.81
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.7
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.54
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.67
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.52
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.34
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.21
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.0
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.79
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.6
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.14
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.01
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.98
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.97
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.94
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.43
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.11
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.69
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.69
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.35
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.92
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.79
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.67
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.91
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.87
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.12
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.98
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.16
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.24
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.17
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.82
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.07
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.93
2p58_C	116	Putative type III secretion protein YSCG; type III	81.64
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.35

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-40  Score=353.53  Aligned_cols=475  Identities=9%  Similarity=0.029  Sum_probs=378.6

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV  160 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (645)
                      ++...|+.++..+.+ .|++++|..+|++|...  .|+..++..++.+|.+.|++++|..+|+.+...  ++++.+++.+
T Consensus        82 ~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l  156 (597)
T 2xpi_A           82 SREDYLRLWRHDALM-QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA  156 (597)
T ss_dssp             CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence            578899999999999 89999999999999865  578899999999999999999999999998754  6889999999


Q ss_pred             HHHHHhcCCHhHHHHHHhhcCCCC-------------------hhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh
Q 006437          161 MDVLFKIGRVDLGIKVLKETQLPN-------------------FLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVR  221 (645)
Q Consensus       161 l~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  221 (645)
                      +.+|.+.|++++|+++|+++.+.+                   ..+|+.++.+|.+.|++++|+++|++|.+.+. .+..
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~  235 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE  235 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence            999999999999999999755443                   67888999999999999999999999887642 2344


Q ss_pred             hHHHHHHHHHhcCCHHH--HHHH-HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437          222 MFEILLNCFCKMGRIAE--AYQL-LGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK  298 (645)
Q Consensus       222 ~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  298 (645)
                      .+..+...+...+..+.  +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.  +++..+|+.++.
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~  313 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence            55555544433322221  1111 444444445555667777788888889999999999888765  578888999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCccc
Q 006437          299 GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSL  378 (645)
Q Consensus       299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  378 (645)
                      +|.+.|++++|..+|+++.+.+. .+..++..++.++.+.|+.++|.++++++.+..                       
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------  369 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-----------------------  369 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred             HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------------------
Confidence            99999999999999998887653 367788888889999999999999998887632                       


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 006437          379 LPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP  458 (645)
Q Consensus       379 a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  458 (645)
                                ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|.++|+++.+.++
T Consensus       370 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  438 (597)
T 2xpi_A          370 ----------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ  438 (597)
T ss_dssp             ----------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred             ----------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                      2346667777788888888888888888887642 33567888888888888888888888888887765


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC--H
Q 006437          459 AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPN--A  532 (645)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~  532 (645)
                      . +..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+.    +..|+  .
T Consensus       439 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~  516 (597)
T 2xpi_A          439 G-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA  516 (597)
T ss_dssp             T-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred             c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence            4 67778888888888888888888888888764 456788888888888888888888888888764    55776  6


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .+|..++.+|.+.|++++|.++++++.+.++. +..+|..++.+|.+.|++++|.+.++++.+  ..|+..
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~  584 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEI  584 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCh
Confidence            78888888888888888888888888876543 788888888888888888888888888885  455544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-37  Score=330.57  Aligned_cols=479  Identities=11%  Similarity=-0.009  Sum_probs=404.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006437           53 VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRG  132 (645)
Q Consensus        53 ~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  132 (645)
                      ....+.+.++++.|+.+|+.+....   |+..++..++.++.+ .|++++|..+|+.+...  +++..+++.++..|.+.
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~  163 (597)
T 2xpi_A           90 WRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCC-TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKL  163 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHH-cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHH
Confidence            3355668899999999999987542   577899999999999 89999999999988654  67899999999999999


Q ss_pred             CChHHHHHHHHHHhhC---------------CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHH
Q 006437          133 EMYGMVLEAFDEMGRF---------------GFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCN  194 (645)
Q Consensus       133 ~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~  194 (645)
                      |++++|.++|+++...               |.+.+..+|+.++.+|.+.|++++|+++|+++.   +.+...+..+...
T Consensus       164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  243 (597)
T 2xpi_A          164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN  243 (597)
T ss_dssp             TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence            9999999999954322               234468999999999999999999999999986   3344555556554


Q ss_pred             HHhcCCcchHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH
Q 006437          195 LCKLNDVSNVK--DV-IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRL  271 (645)
Q Consensus       195 ~~~~g~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  271 (645)
                      +...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.+.  +++..+++.++.+|.+.|++
T Consensus       244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~  321 (597)
T 2xpi_A          244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF  321 (597)
T ss_dssp             TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred             hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence            44333222211  11 455555555556667888899999999999999999999875  57999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGL  351 (645)
Q Consensus       272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  351 (645)
                      ++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++
T Consensus       322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999765 4478899999999999999999999999998653 447889999999999999999999999999


Q ss_pred             HHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006437          352 LELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV  431 (645)
Q Consensus       352 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  431 (645)
                      .+..                                 +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus       400 ~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  445 (597)
T 2xpi_A          400 STMD---------------------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL  445 (597)
T ss_dssp             HHHC---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred             HHhC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence            8742                                 2356788899999999999999999999998864 44778899


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHH
Q 006437          432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPLD--VVSYTVAIR  505 (645)
Q Consensus       432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~  505 (645)
                      .++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.    +..|+  ..+|..++.
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  524 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH  524 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence            9999999999999999999999988766 7889999999999999999999999999876    55676  789999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437          506 GLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF  578 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  578 (645)
                      +|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+. +...+..+..+|.
T Consensus       525 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~  595 (597)
T 2xpi_A          525 AYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE  595 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence            9999999999999999998854 348899999999999999999999999999987665 6777877776653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=3.6e-29  Score=255.15  Aligned_cols=186  Identities=15%  Similarity=0.079  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCcCHHh
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR---------IAEAYQLLGLMITLGTSLSVNA  257 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  257 (645)
                      .++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.         ++.|.++|++|.+.|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            3455556666666666666666666666666666666666666655432         4556666666666666666666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437          258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK  337 (645)
Q Consensus       258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  337 (645)
                      |+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437          338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCL  372 (645)
Q Consensus       338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  372 (645)
                      .|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            66666666666666666666666666666665554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=5e-30  Score=261.48  Aligned_cols=216  Identities=14%  Similarity=0.108  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437          101 ETVRGIVGELARVGCVIKAQ-TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKE  179 (645)
Q Consensus       101 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  179 (645)
                      ..+..+.+++.+.+...++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            34556667777777665554 58889999999999999999999999999999999999999999887764332      


Q ss_pred             cCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 006437          180 TQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWT  259 (645)
Q Consensus       180 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  259 (645)
                                      .+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus        81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn  144 (501)
T 4g26_A           81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG  144 (501)
T ss_dssp             ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence                            2345678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 006437          260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKM  338 (645)
Q Consensus       260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  338 (645)
                      ++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.8e-25  Score=224.71  Aligned_cols=181  Identities=18%  Similarity=0.114  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      .|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..++.
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  282 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence            34444444455555555555555544431 112444455555555555555555555555554433 3444555555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      +.|++++|.+.|+++.+.. +.+..+|+.+...+.+.|++++|...++++.+  ..| +..++..+...+.+.|++++|.
T Consensus       283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555555442 34455555555555555555555555555554  223 3455555555555555555555


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437          553 RLLQDVIDARIELDYHTSIRLTKFIFKF  580 (645)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  580 (645)
                      +.++++.+..+. +...|..+...+...
T Consensus       360 ~~~~~a~~~~p~-~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          360 MHYKEAIRISPT-FADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhCCC-CHHHHHhHHHHHHHc
Confidence            555555553332 344555555444433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=6.9e-25  Score=220.38  Aligned_cols=371  Identities=18%  Similarity=0.135  Sum_probs=204.1

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV  176 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~  176 (645)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++++|++.
T Consensus        12 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   89 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            466666766666665553 3344555555566666666666666666666543 44566666666666666666666666


Q ss_pred             HhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437          177 LKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTS  252 (645)
Q Consensus       177 ~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  252 (645)
                      |+++.   +.+..+|..+..++.+.|++++|.+.|+++.+.+  |+ ...+..+...+...|++++|.+.|+.+.+.. +
T Consensus        90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p  166 (388)
T 1w3b_A           90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P  166 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence            66543   3334456666666666666666666666665542  32 3344555555555666666666666665543 2


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006437          253 LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLI  332 (645)
Q Consensus       253 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  332 (645)
                      .+..+|..+...+...|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+... .+..++..+.
T Consensus       167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~  244 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA  244 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence            234555556666666666666666666655432 12334444444555555555555555554444311 1233444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437          333 DCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV  412 (645)
Q Consensus       333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  412 (645)
                      ..+.+.|++++|...|++                                                              
T Consensus       245 ~~~~~~g~~~~A~~~~~~--------------------------------------------------------------  262 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRR--------------------------------------------------------------  262 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHH--------------------------------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHH--------------------------------------------------------------
Confidence            444444444444444444                                                              


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                           +.+.. +.+..++..+...+.+.|++++|...++++.+..+. +..++..+...+.+.|++++|.+.++++.+..
T Consensus       263 -----al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          263 -----AIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             -----HHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             -----HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                 44431 112334444444555555555555555555444332 44555556666666666666666666665542


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          493 YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       493 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                       +.+..++..+...|.+.|++++|...++++.+  +.| +...|..+...+...|
T Consensus       336 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          336 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence             33455666666666666666666666666665  344 4556666666555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.1e-23  Score=216.90  Aligned_cols=256  Identities=11%  Similarity=0.005  Sum_probs=172.6

Q ss_pred             cCChhHHHHHHHHHHh-----CCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437          303 AKMFSIAFSFLDMLES-----EGHA--------PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLST  369 (645)
Q Consensus       303 ~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  369 (645)
                      .|++++|...|+++.+     ..-.        .+...+..+...+...|++++|...++++.+...  +...+..+...
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~  279 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI  279 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHH
Confidence            6788888888888776     3111        2345667777888888999999999988887542  26666667777


Q ss_pred             HHhcCCcccHHHHHhc-CCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 006437          370 VCLSGRFSLLPKLVCG-LEVE-ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAI  447 (645)
Q Consensus       370 ~~~~~~~~~a~~~~~~-~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  447 (645)
                      +...|++++|.+.++. .... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus       280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  358 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCE  358 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777777776632 1222 245567777777777777777777777777653 224556666677777777777777


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHh---cCCHHHHHHH
Q 006437          448 NVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLE---GGRTEEAYIL  519 (645)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~  519 (645)
                      ..++.+.+..+. +...+..+...+.+.|++++|...++++.+.... ++    ...|..+...+..   .|++++|...
T Consensus       359 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~  437 (514)
T 2gw1_A          359 TLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL  437 (514)
T ss_dssp             HHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred             HHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence            777777766544 4556667777777777777777777776654200 11    2267777777777   7777777777


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          520 YSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       520 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      ++++.+.. +.+..++..+...+...|++++|.+.++++.+..+
T Consensus       438 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          438 LEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            77776632 22566667777777777777777777777776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.7e-22  Score=211.31  Aligned_cols=440  Identities=10%  Similarity=-0.060  Sum_probs=240.3

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006437           85 SFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL  164 (645)
Q Consensus        85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  164 (645)
                      .+......+.+ .|++++|+..|+++....  |+..++..+..+|...|++++|...++++.+.+ +.+..++..+..+|
T Consensus         8 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            8 ALKDKGNQFFR-NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHH-TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            34444455555 566666666666666553  456666666666666666666666666666543 34455666666666


Q ss_pred             HhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          165 FKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ  241 (645)
Q Consensus       165 ~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (645)
                      ...|++++|...|+++.   +++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            66666666666665543   222223333333222222112222222111111100100000000000000000000000


Q ss_pred             HHHHHHHcCC---------CcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhchHHH
Q 006437          242 LLGLMITLGT---------SLSVNAWTVLIDGFRR---LRRLDMAGYLWEKMVQ-----NGC--------SPNVVTYTSL  296 (645)
Q Consensus       242 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l  296 (645)
                      +...+.....         +.+...+......+..   .|++++|.++|+++.+     ...        +.+..++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence            0000000000         0112222222222222   4455555555555444     100        1122334444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437          297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF  376 (645)
Q Consensus       297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  376 (645)
                      ...+...|++++|...++++.+...  +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence            4445555555555555555444322  24444444555555555555555555544431 22334444455555555555


Q ss_pred             ccHHHHHhcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006437          377 SLLPKLVCGL-E-VEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV  454 (645)
Q Consensus       377 ~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  454 (645)
                      ++|...++.. . .+.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555554221 1 12356788889999999999999999999998763 3356778888999999999999999999998


Q ss_pred             HcCCCC-c----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437          455 MNNPAV-N----AHVHTAIVDRLIE---AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI  526 (645)
Q Consensus       455 ~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  526 (645)
                      ...+.. +    ...+..+..++..   .|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+ 
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-  477 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD-  477 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence            765432 1    3478899999999   999999999999998875 45688899999999999999999999999998 


Q ss_pred             CCCCCHHHH
Q 006437          527 AVPPNAYTY  535 (645)
Q Consensus       527 ~~~p~~~~~  535 (645)
                       +.|+....
T Consensus       478 -~~~~~~~~  485 (514)
T 2gw1_A          478 -LARTMEEK  485 (514)
T ss_dssp             -HCSSHHHH
T ss_pred             -hccccHHH
Confidence             56765433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=9.8e-21  Score=194.24  Aligned_cols=144  Identities=12%  Similarity=0.153  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHH------------HHHHHcCCCHHHHHHHHHHHHHcC
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL------------LRGLCGARKIDEAINVYQGIVMNN  457 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~  457 (645)
                      +..+|..+...|...|++++|+..|+++.+.  .|+ ...+..+            ...+...|++++|...++.+....
T Consensus       210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~  287 (450)
T 2y4t_A          210 NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE  287 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4555666666677777777777777766653  233 2222222            566777777777777777777755


Q ss_pred             CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 006437          458 PAVN---AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY  533 (645)
Q Consensus       458 ~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~  533 (645)
                      +...   ...+..+..++.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+  +.| +..
T Consensus       288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~  364 (450)
T 2y4t_A          288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ  364 (450)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred             CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence            4411   3356677777778888888888888777653 34677777788888888888888888888776  455 345


Q ss_pred             HHHHHH
Q 006437          534 TYRVML  539 (645)
Q Consensus       534 ~~~~ll  539 (645)
                      .+..+.
T Consensus       365 ~~~~l~  370 (450)
T 2y4t_A          365 IREGLE  370 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=2.1e-20  Score=191.72  Aligned_cols=331  Identities=12%  Similarity=0.057  Sum_probs=235.4

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437          219 NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK  298 (645)
Q Consensus       219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  298 (645)
                      +...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..+|...|++++|.+.|+++.+.+ +.+...+..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            34445555555555555555555555555432 2245555555555555555555555555555442 223445555555


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHH------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006437          299 GFMEAKMFSIAFSFLDMLESEGHAPDL----VFHNV------------LIDCLSKMGSYDDALDVYDGLLELKLVPDSYT  362 (645)
Q Consensus       299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  362 (645)
                      .|...|++++|...|+++.+..  |+.    ..+..            +...+...|++++|...|+++.+..       
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------  173 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-------  173 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            5555555555555555555432  221    22222            3445777888899988888887642       


Q ss_pred             HHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006437          363 FCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK  442 (645)
Q Consensus       363 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  442 (645)
                                                +.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus       174 --------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~  226 (450)
T 2y4t_A          174 --------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD  226 (450)
T ss_dssp             --------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred             --------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence                                      2355677888888999999999999999988753 4467889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHH
Q 006437          443 IDEAINVYQGIVMNNPAVNAHVHTAI------------VDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIR  505 (645)
Q Consensus       443 ~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~  505 (645)
                      +++|...++.+....+. +...+..+            ...+.+.|++++|...|+++.+..  |+     ...|..+..
T Consensus       227 ~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~  303 (450)
T 2y4t_A          227 HELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH  303 (450)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence            99999999999987665 44445444            889999999999999999998864  44     447888999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH--------
Q 006437          506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF--------  576 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------  576 (645)
                      .+.+.|++++|+..++++.+.  .| +..++..+..+|...|++++|.+.++++.+..+. +...+..+..+        
T Consensus       304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhccc
Confidence            999999999999999999873  45 7899999999999999999999999999986654 67777777743        


Q ss_pred             ----HHhcC-----ChhHHHHHHHHH
Q 006437          577 ----IFKFH-----SSSSAVNQLVEM  593 (645)
Q Consensus       577 ----~~~~g-----~~~~A~~~~~~m  593 (645)
                          |...|     +.+++.+.++++
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHH
Confidence                33344     556777777763

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1e-20  Score=198.83  Aligned_cols=254  Identities=12%  Similarity=0.076  Sum_probs=138.6

Q ss_pred             CChhHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437          304 KMFSIAFSFLDMLESEGHAPD------LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS  377 (645)
Q Consensus       304 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  377 (645)
                      +++++|..+++++.+......      ..++..+...+...|++++|...++++.+..  |+...+.             
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-------------  280 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI-------------  280 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHH-------------
Confidence            467777777777776532110      2245566677888889999999998888742  3334444             


Q ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437          378 LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN  457 (645)
Q Consensus       378 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  457 (645)
                                         .+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++....
T Consensus       281 -------------------~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          281 -------------------FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             -------------------HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -------------------HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence                               44444455555555555555555432 2234445555555555555555555555555554


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCH
Q 006437          458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA-----VPPNA  532 (645)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~  532 (645)
                      +. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..     .....
T Consensus       341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  418 (537)
T 3fp2_A          341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI  418 (537)
T ss_dssp             TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence            43 33445555555555666666666665555543 3344555555555555666666666555554311     00111


Q ss_pred             HHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          533 YTYRVMLLSFCKE----------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       533 ~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ..+......+...          |++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++++.+
T Consensus       419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            2233333444444          5566666666655554332 455555555666666666666666665554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.9e-20  Score=196.90  Aligned_cols=437  Identities=10%  Similarity=-0.032  Sum_probs=307.7

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM  161 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  161 (645)
                      .+..|..+...+.+ .|+++.|...|+++.... +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFT-AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHH-TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            34566777778888 799999999999998875 4578888899999999999999999999998775 55788888999


Q ss_pred             HHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHH
Q 006437          162 DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF--YPNVRMFEILLNCFCKMGRIAEA  239 (645)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a  239 (645)
                      .++...|++++|+..|+.+. .++...+..+..+...+....|...++.+.....  .+........+..+....+.+.+
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            99999999999999997443 2222223334455555666788888888855310  11111122334445555565555


Q ss_pred             HHHHHHHHHcCCCcCH-HhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC--------hhchHHHHHHHHh
Q 006437          240 YQLLGLMITLGTSLSV-NAWTVLIDGFRR--------LRRLDMAGYLWEKMVQNGCSPN--------VVTYTSLIKGFME  302 (645)
Q Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~li~~~~~  302 (645)
                      ...+.....  ..+.. .....+...+..        .|++++|..+++++.+..  |+        ..++..+...+..
T Consensus       180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence            444433221  11111 133333333322        247888999999888643  43        2246666677888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHH
Q 006437          303 AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKL  382 (645)
Q Consensus       303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  382 (645)
                      .|++++|...++.+.+.  .|+...+..+...+...|++++|...++++.+..                           
T Consensus       256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------------  306 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---------------------------  306 (537)
T ss_dssp             TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---------------------------
T ss_pred             cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---------------------------
Confidence            89999999999998886  4557788888888999999999999999888742                           


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 006437          383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA  462 (645)
Q Consensus       383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  462 (645)
                            +.+...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+..+. +.
T Consensus       307 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~  378 (537)
T 3fp2_A          307 ------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LP  378 (537)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CT
T ss_pred             ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence                  2245567777788888888999999988888753 234567788888888999999999999998887665 56


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHhhCC
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-----PLDVVSYTVAIRGLLEG----------GRTEEAYILYSQMKHIA  527 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~  527 (645)
                      ..+..+...+...|++++|.+.++++.+...     ......+..+...+.+.          |++++|...++++.+..
T Consensus       379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  458 (537)
T 3fp2_A          379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD  458 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence            6788888999999999999999988876530     01122244455667777          99999999999988742


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                       +.+..++..+...|...|++++|.+.++++.+....
T Consensus       459 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          459 -PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence             336788889999999999999999999999886544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=1.6e-17  Score=164.49  Aligned_cols=315  Identities=12%  Similarity=0.049  Sum_probs=211.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006437          257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS  336 (645)
Q Consensus       257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  336 (645)
                      .+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence            34444444444555555555555444332 12334444444555555555555555555444321 13344555555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437          337 KMGSYDDALDVYDGLLELKLVP----DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV  412 (645)
Q Consensus       337 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  412 (645)
                      ..|++++|...++++.+.  .|    +...+..+...+.                    ...+..+...+...|++++|+
T Consensus        83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--------------------~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE--------------------MQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH--------------------HHHHHHHHHHHHHccCHHHHH
Confidence            555555555555555542  22    1111111111000                    112333456788899999999


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      ..++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+..
T Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  218 (359)
T 3ieg_A          141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD  218 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9999988763 346777888888999999999999999999887665 77888899999999999999999999998764


Q ss_pred             CCCChhhHHH------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 006437          493 YPLDVVSYTV------------AIRGLLEGGRTEEAYILYSQMKHIAVPPN-A----YTYRVMLLSFCKERNIKMVKRLL  555 (645)
Q Consensus       493 ~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~  555 (645)
                       +.+...+..            +...+.+.|++++|...++++.+.  .|+ .    ..+..+...+...|++++|.+.+
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  295 (359)
T 3ieg_A          219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRIC  295 (359)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence             334444432            366688999999999999998873  454 3    23556778889999999999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +++.+..+. ++..+..++.++.+.|++++|.+.++++.+  ..|+..
T Consensus       296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~  340 (359)
T 3ieg_A          296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ  340 (359)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence            999886544 788999999999999999999999999984  567655

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=2.4e-17  Score=163.24  Aligned_cols=326  Identities=14%  Similarity=0.073  Sum_probs=207.0

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFR  266 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  266 (645)
                      .+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence            34444445555555555555555554432 1234445555555555555555555555554432 113344455555555


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCC----ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 006437          267 RLRRLDMAGYLWEKMVQNGCSP----NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYD  342 (645)
Q Consensus       267 ~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  342 (645)
                      ..|++++|.+.|++..+.  .|    +...+..+...+.                       ...+..+...+...|+++
T Consensus        83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence            555555555555554432  12    1111111111000                       011223357788899999


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437          343 DALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG  422 (645)
Q Consensus       343 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  422 (645)
                      +|...++++.+..                                 +.+...+..+...+...|++++|+..+++..+..
T Consensus       138 ~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  184 (359)
T 3ieg_A          138 AAITFLDKILEVC---------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK  184 (359)
T ss_dssp             HHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhC---------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999999887742                                 2234556667777778888888888888877653


Q ss_pred             CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT------------AIVDRLIEAGRCHKAIQLFRRAIV  490 (645)
Q Consensus       423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~  490 (645)
                       +.+...+..+...+...|++++|...++...+..+. +...+.            .+...+.+.|++++|...++++.+
T Consensus       185 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  262 (359)
T 3ieg_A          185 -SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK  262 (359)
T ss_dssp             -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             345667777777788888888888888888776654 223222            236678889999999999999887


Q ss_pred             CCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437          491 EKYPLDV----VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL  565 (645)
Q Consensus       491 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  565 (645)
                      .. +.+.    ..+..+...+.+.|++++|+..+++..+.  .| +..++..+...+...|++++|.+.++++.+..+. 
T Consensus       263 ~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-  338 (359)
T 3ieg_A          263 TE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-  338 (359)
T ss_dssp             HC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred             cC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence            64 2233    23556778889999999999999999874  45 7888999999999999999999999999886654 


Q ss_pred             CHHHHHHHHHHHH
Q 006437          566 DYHTSIRLTKFIF  578 (645)
Q Consensus       566 ~~~~~~~l~~~~~  578 (645)
                      +...+..+..+..
T Consensus       339 ~~~~~~~l~~~~~  351 (359)
T 3ieg_A          339 DQQIREGLEKAQR  351 (359)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH
Confidence            5666666666544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=4.4e-16  Score=161.03  Aligned_cols=320  Identities=15%  Similarity=0.107  Sum_probs=209.3

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cC
Q 006437          198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRR----LR  269 (645)
Q Consensus       198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~  269 (645)
                      .++.++|.+.|++..+.|   +...+..+...|..    .+++++|.+.|+...+.|   +...+..+...|..    .+
T Consensus        92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  165 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR  165 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence            445555555555554443   34444555555555    556666666666665544   34455555555555    56


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCH
Q 006437          270 RLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK----MGSY  341 (645)
Q Consensus       270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~  341 (645)
                      ++++|.+.|++..+.|   +...+..+...|..    .+++++|...|++..+.|   +...+..+...|..    .++.
T Consensus       166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            6666666666666543   45555566666665    566677777776666653   34455555555554    5667


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 006437          342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCK----AGFPNQAVKLYNT  417 (645)
Q Consensus       342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~  417 (645)
                      ++|...|++..+.+                                   +...+..+...|..    .+++++|+..|++
T Consensus       240 ~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~  284 (490)
T 2xm6_A          240 TQSRVLFSQSAEQG-----------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRK  284 (490)
T ss_dssp             HHHHHHHHHHHTTT-----------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence            77777777666542                                   22233334444444    6778888888887


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 006437          418 MLDKGFTPDNYSFVGLLRGLCGA-----RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG---RCHKAIQLFRRAI  489 (645)
Q Consensus       418 m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~  489 (645)
                      ..+.|   +...+..+...+...     ++.++|...+++..+.+   +...+..+...|...|   ++++|.+.|++..
T Consensus       285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~  358 (490)
T 2xm6_A          285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA  358 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence            77654   444555666666665     78888888888887765   4456677777777756   7888888888888


Q ss_pred             HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 006437          490 VEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       490 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~  561 (645)
                      +.+   +...+..+...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|..++++..+.
T Consensus       359 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          359 AKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            875   77888888888888    788999999999888754   56778888888887    78999999999988886


Q ss_pred             CCC-c-CHHHHHHHHHH
Q 006437          562 RIE-L-DYHTSIRLTKF  576 (645)
Q Consensus       562 ~~~-~-~~~~~~~l~~~  576 (645)
                      +.. | ++.....+...
T Consensus       433 ~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          433 DMNLFGTENRNITEKKL  449 (490)
T ss_dssp             HCCHHHHHHHHHHHTTS
T ss_pred             CCCCcCCHHHHHHHHhc
Confidence            643 1 33344444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.82  E-value=7.8e-16  Score=159.12  Aligned_cols=356  Identities=10%  Similarity=0.001  Sum_probs=260.9

Q ss_pred             CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCc
Q 006437          182 LPNFLSFNIALCNLCK----LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSL  253 (645)
Q Consensus       182 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~  253 (645)
                      ..+...+..+...|..    .+++++|++.|++..+.|   +...+..+...|..    .++.++|.+.|+...+.|   
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  109 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---  109 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            4455555666555555    566666666666666543   44556666666666    666666666666666544   


Q ss_pred             CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 006437          254 SVNAWTVLIDGFRR----LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----AKMFSIAFSFLDMLESEGHAPDL  325 (645)
Q Consensus       254 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  325 (645)
                      +...+..|...|..    .+++++|.+.|++..+.|   +...+..+...|..    .+++++|.+.|++..+.|   +.
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~  183 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV  183 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44555556666655    566666666666666543   44455555555555    556666666666666553   44


Q ss_pred             hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHH
Q 006437          326 VFHNVLIDCLSK----MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSY  401 (645)
Q Consensus       326 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~  401 (645)
                      ..+..+...|..    .++.++|.+.|++..+.+                                   +...+..+...
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~  228 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------------------------------DELGQLHLADM  228 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHH
Confidence            555555556655    566666666666665532                                   34455556666


Q ss_pred             HHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          402 FCK----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       402 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      |..    .+++++|...|++..+.|   +...+..+...+..    .++.++|...|++..+.+   +...+..+...|.
T Consensus       229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~  302 (490)
T 2xm6_A          229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD  302 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence            665    789999999999988875   45566667777776    899999999999998765   5567778888888


Q ss_pred             hc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 006437          474 EA-----GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK-  544 (645)
Q Consensus       474 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-  544 (645)
                      ..     +++++|...|++..+.+   +...+..+...|...|   +.++|++.|++..+.|   +...+..+...|.. 
T Consensus       303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g  376 (490)
T 2xm6_A          303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG  376 (490)
T ss_dssp             HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            87     89999999999999876   6778888888888866   8899999999999853   67888899999988 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC
Q 006437          545 ---ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLGLI  599 (645)
Q Consensus       545 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~  599 (645)
                         .+++++|.+++++..+.+   ++..+..|...|.+    .++.++|.+.|++..+.|..
T Consensus       377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence               899999999999999875   57888899999998    89999999999999988755

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=4e-15  Score=160.66  Aligned_cols=416  Identities=15%  Similarity=0.118  Sum_probs=310.5

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437           52 IVHSTLLNCPSDLIALSFFIWCAKQRD-YFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW  130 (645)
Q Consensus        52 ~~~~~l~~~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  130 (645)
                      ...+.+...+.+.+|+++++.+...+. |..+....+.++....+ . +.....+..++....    +   ...+...|.
T Consensus       990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-a-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A          990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-A-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-h-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence            344667789999999999999876544 56677888888877777 3 556666666655422    1   344777888


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437          131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGM  210 (645)
Q Consensus       131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  210 (645)
                      ..|.+++|..+|++..     -.....+.++   -..+++++|.++.++..  +..+|..+..++...|++++|++.|.+
T Consensus      1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             hCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            9999999999999853     1222233333   37789999999999774  467788999999999999999999965


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437          211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV  290 (645)
Q Consensus       211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  290 (645)
                      .      -|...|..++..+.+.|++++|.+.+...++..  ++....+.++.+|++.+++++...+.    +   .++.
T Consensus      1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A         1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred             c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence            3      477788999999999999999999999888764  34444556999999999998655443    2   3566


Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      ..|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.      .+..+|..+..+|
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence            77888999999999999999999985         37899999999999999999999876      3568888899999


Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--CCCHHHHHH
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG--ARKIDEAIN  448 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~  448 (645)
                      ...|++..|......  +..++..+..++..|.+.|.+++|+.+++...... +-....|.-+...+++  .+++.++.+
T Consensus      1261 ve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred             hhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999887754  44456677799999999999999999998776543 2233455555555554  445555666


Q ss_pred             HHHHHHHcCC----CCcHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437          449 VYQGIVMNNP----AVNAHVHTAIVDRLIEAGRCHKAIQL-------------FRRAIVEKYPLDVVSYTVAIRGLLEGG  511 (645)
Q Consensus       449 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~g  511 (645)
                      .|..-.....    --+...|..++-.|.+.|+++.|...             |++.+..  ..|+..|...+.-|...+
T Consensus      1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence            5553322110    12567789999999999999998832             3332222  346777777777777665


Q ss_pred             ---------------CHHHHHHHHH
Q 006437          512 ---------------RTEEAYILYS  521 (645)
Q Consensus       512 ---------------~~~~A~~~~~  521 (645)
                                     +++++.++++
T Consensus      1416 P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1416 PLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             hHHHHHHHHHhhhcCChHHHHHHHH
Confidence                           6677766666

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=5.1e-17  Score=158.85  Aligned_cols=285  Identities=13%  Similarity=0.001  Sum_probs=169.8

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006437          254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLID  333 (645)
Q Consensus       254 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  333 (645)
                      +...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence            44455555555666666666666666665442 22344455555566666666666666666655421 23445555566


Q ss_pred             HHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437          334 CLSKMG-SYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV  412 (645)
Q Consensus       334 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  412 (645)
                      .+...| ++++|...|+++.+..  |                               .+...|..+...+...|++++|+
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~  145 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLE--K-------------------------------TYGPAWIAYGHSFAVESEHDQAM  145 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTC--T-------------------------------TCTHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhC--C-------------------------------ccHHHHHHHHHHHHHccCHHHHH
Confidence            666666 6666666666665431  1                               12334555555666666666666


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      ..+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus       146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            6666666542 123344555666666666666666666666665544 45666666667777777777777776665431


Q ss_pred             --------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          493 --------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       493 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                              .+.+...|..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence                    12235566777777777777777777777776632 225566777777777777777777777776665433


Q ss_pred             cCHHHHHHHHHHH
Q 006437          565 LDYHTSIRLTKFI  577 (645)
Q Consensus       565 ~~~~~~~~l~~~~  577 (645)
                       +...+..+..++
T Consensus       303 -~~~~~~~l~~~~  314 (330)
T 3hym_B          303 -DTFSVTMLGHCI  314 (330)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHH
Confidence             566666666666

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=5.8e-16  Score=161.82  Aligned_cols=428  Identities=9%  Similarity=0.033  Sum_probs=275.4

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCC
Q 006437          107 VGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPN  184 (645)
Q Consensus       107 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~  184 (645)
                      |++..+.. +-+...+..++. +.+.|+++.|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..  .|+
T Consensus         2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            44444443 447788888888 477899999999999998763 5677889999999999999999999999876  456


Q ss_pred             hhhHHHHHHHH-HhcCCcchHHH----HHHHHHH-CCCCC-CHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 006437          185 FLSFNIALCNL-CKLNDVSNVKD----VIGMMVR-KGFYP-NVRMFEILLNCFCK---------MGRIAEAYQLLGLMIT  248 (645)
Q Consensus       185 ~~~~~~ll~~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~  248 (645)
                      ...|...+... ...|+.++|.+    +|+.... .|..| +...|...+.....         .|+++.|..+|+...+
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            66666666433 34577777765    6665543 35443 45566666665544         5677778888877776


Q ss_pred             cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHH------hCC--
Q 006437          249 LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE------SEG--  320 (645)
Q Consensus       249 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~--  320 (645)
                      .........|..........+. ..+.                   .++.  ...+++..|..+++.+.      +..  
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~  216 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP  216 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred             chhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            2111111222222111100000 0000                   1110  01233445554444421      111  


Q ss_pred             -CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437          321 -HAPD--------LVFHNVLIDCLSKM----GSY----DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV  383 (645)
Q Consensus       321 -~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  383 (645)
                       +.|+        ...|...+......    ++.    +.+..+|++.....                            
T Consensus       217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~----------------------------  268 (530)
T 2ooe_A          217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL----------------------------  268 (530)
T ss_dssp             CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC----------------------------
Confidence             1222        12222222111111    111    24444555544421                            


Q ss_pred             hcCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437          384 CGLEVEADLVVYNALLSYFCK-------AGFPN-------QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV  449 (645)
Q Consensus       384 ~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  449 (645)
                           +.+...|......+.+       .|+++       +|..+|++..+.-.+-+...+..++..+.+.|++++|..+
T Consensus       269 -----p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~  343 (530)
T 2ooe_A          269 -----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI  343 (530)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence                 2245556666655554       67776       8899999887632233567788888888889999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhhCCC
Q 006437          450 YQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LLEGGRTEEAYILYSQMKHIAV  528 (645)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~  528 (645)
                      |+++++..+......|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+.  
T Consensus       344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--  420 (530)
T 2ooe_A          344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--  420 (530)
T ss_dssp             HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred             HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence            9999986554223578888888899999999999999998763 2233333332222 33689999999999998873  


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          529 PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-EL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       529 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .| +...|..++..+.+.|+.++|..+|+++...+. .|  ....|...+....+.|+.+.+.++.+++.+
T Consensus       421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45 678899999999999999999999999998643 22  355888888988999999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=8.2e-15  Score=158.29  Aligned_cols=422  Identities=11%  Similarity=0.091  Sum_probs=312.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHH
Q 006437          117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG--FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCN  194 (645)
Q Consensus       117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~  194 (645)
                      .+++-....+++|...|++.+|+++++++.-.+  +..+....+.|+....+. +..+..+..++...-+   ...+...
T Consensus       983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A          983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred             cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence            355666778899999999999999999998432  123456667777777766 4455666555544323   4457777


Q ss_pred             HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437          195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA  274 (645)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  274 (645)
                      +...|.+++|..+|++...     .....+.++.   ..+++++|.++.++..      +..+|..+..++...|++++|
T Consensus      1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence            8889999999999998521     1222233322   6788999999988652      577899999999999999999


Q ss_pred             HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL  354 (645)
Q Consensus       275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  354 (645)
                      .+.|.+.      .|...|..++.++.+.|++++|.+++....+..  ++....+.++.+|++.+++++.....    + 
T Consensus      1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A         1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred             HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence            9999653      477888899999999999999999999887764  33333445888999999888644432    2 


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          355 KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL  434 (645)
Q Consensus       355 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  434 (645)
                        .++...+..+...|...|++++|..+|...      ..|..+...|++.|++++|.+.+++.      .+..+|..+.
T Consensus      1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A         1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence              345667778889999999999999999763      47999999999999999999999876      3568888899


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--C
Q 006437          435 RGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG--R  512 (645)
Q Consensus       435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~  512 (645)
                      .+|...|++..|......     +..+...+..++..|.+.|.+++|..+++..+... +-+...|+-+...|++..  +
T Consensus      1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence            999999999999886653     33366677889999999999999999999887665 446778888888887753  5


Q ss_pred             HHHHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCcCHHHHHHHHH
Q 006437          513 TEEAYILYSQMKHIAVPP------NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA-----------RIELDYHTSIRLTK  575 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~  575 (645)
                      ..++.++|..-..  ++|      +...|.-+.-.|.+.|+++.|...+-+-...           .-..++..|...+.
T Consensus      1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A         1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred             HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence            5556666554332  333      5677889999999999999988432211100           11236777777777


Q ss_pred             HHHhcC---------------ChhHHHHHHH
Q 006437          576 FIFKFH---------------SSSSAVNQLV  591 (645)
Q Consensus       576 ~~~~~g---------------~~~~A~~~~~  591 (645)
                      .|...+               +.+.+.++++
T Consensus      1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            777666               6666666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.3e-16  Score=156.00  Aligned_cols=293  Identities=11%  Similarity=0.032  Sum_probs=199.8

Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437          217 YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL  296 (645)
Q Consensus       217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  296 (645)
                      ..+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            3445566666667777777777777777776653 2244555566666777777777777777776542 2355666677


Q ss_pred             HHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437          297 IKGFMEAK-MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR  375 (645)
Q Consensus       297 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  375 (645)
                      ...+...| ++++|...|+++.+... .+...+..+...+...|++++|...++++.+..  |                 
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------  156 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--K-----------------  156 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--T-----------------
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--c-----------------
Confidence            77777777 77777777777766532 245566677777777777777777777776632  1                 


Q ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006437          376 FSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM  455 (645)
Q Consensus       376 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  455 (645)
                                    .+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++..
T Consensus       157 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          157 --------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             --------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                          122334445666677777777777777776653 33456667777777777777777777777765


Q ss_pred             cCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437          456 NNP--------AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       456 ~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  527 (645)
                      ...        .....++..+..++.+.|++++|...++++.+.. +.+...|..+...+.+.|++++|...++++.+  
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  298 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--  298 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence            421        2245677888888888899999999988888764 44677888888899999999999999998887  


Q ss_pred             CCC-CHHHHHHHHHHH-HhcCCHH
Q 006437          528 VPP-NAYTYRVMLLSF-CKERNIK  549 (645)
Q Consensus       528 ~~p-~~~~~~~ll~~~-~~~g~~~  549 (645)
                      +.| +...+..+..++ ...|+.+
T Consensus       299 ~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          299 LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             cCCCchHHHHHHHHHHHHHhCchh
Confidence            456 567777777777 3445443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=1.5e-15  Score=158.66  Aligned_cols=423  Identities=11%  Similarity=0.063  Sum_probs=270.6

Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 006437           70 FIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG  149 (645)
Q Consensus        70 f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  149 (645)
                      |+......+  .+...|..++.. .+ .|+++.|..+|+++.... +-+...+...+..+.+.|+++.|..+|+++.+..
T Consensus         2 le~al~~~P--~~~~~w~~l~~~-~~-~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~   76 (530)
T 2ooe_A            2 AEKKLEENP--YDLDAWSILIRE-AQ-NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV   76 (530)
T ss_dssp             HHHHHHHCT--TCHHHHHHHHHH-HH-SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred             hhhHhhhCC--CCHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            344444333  489999999984 66 799999999999998864 5678889999999999999999999999999874


Q ss_pred             CCCCHHhHHHHHHHH-HhcCCHhHHHH----HHhhcC------CCChhhHHHHHHHHHh---------cCCcchHHHHHH
Q 006437          150 FTPNTFARNIVMDVL-FKIGRVDLGIK----VLKETQ------LPNFLSFNIALCNLCK---------LNDVSNVKDVIG  209 (645)
Q Consensus       150 ~~~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~  209 (645)
                        |+...|..++... ...|+.+.|.+    +|++..      .++...|...+.....         .|+++.|..+|+
T Consensus        77 --p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~  154 (530)
T 2ooe_A           77 --LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ  154 (530)
T ss_dssp             --CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred             --CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence              6888888777644 45677777665    666542      3455677777766544         688999999999


Q ss_pred             HHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 006437          210 MMVRKGFYPNV---RMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV----  282 (645)
Q Consensus       210 ~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----  282 (645)
                      +.++.   |+.   ..|..........|. ..+..+                   +.  .+.++++.|..++..+.    
T Consensus       155 ~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~  209 (530)
T 2ooe_A          155 RGCVN---PMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMK  209 (530)
T ss_dssp             HHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHH
Confidence            99873   332   233322221111110 011111                   10  12234555555555422    


Q ss_pred             --HcC---CCCC--------hhchHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 006437          283 --QNG---CSPN--------VVTYTSLIKGFMEA----KMF----SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK----  337 (645)
Q Consensus       283 --~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----  337 (645)
                        +..   ++|+        ...|...+......    ++.    +++..+|++..... +.+...|......+.+    
T Consensus       210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~  288 (530)
T 2ooe_A          210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL  288 (530)
T ss_dssp             HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence              111   2232        12343333322221    122    36667777776642 2345566666666554    


Q ss_pred             ---cCCHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437          338 ---MGSYD-------DALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF  407 (645)
Q Consensus       338 ---~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~  407 (645)
                         .|+++       +|..+|++..+. +.|                               .+...|..++..+.+.|+
T Consensus       289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-------------------------------~~~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          289 LAEKGDMNNAKLFSDEAANIYERAIST-LLK-------------------------------KNMLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-------------------------------SCHHHHHHHHHHHHHTTC
T ss_pred             hhhccchhhhhhhhHHHHHHHHHHHHH-hCc-------------------------------ccHHHHHHHHHHHHhcCC
Confidence               57765       677777776641 111                               235566666777777788


Q ss_pred             hHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCCHHHHHHH
Q 006437          408 PNQAVKLYNTMLDKGFTPDN--YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR-LIEAGRCHKAIQL  484 (645)
Q Consensus       408 ~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~  484 (645)
                      +++|..+|+++.+.  .|+.  ..|..++..+.+.|++++|.++|++..+..+. +...+...+.. +...|+.++|..+
T Consensus       337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence            88888888887774  3432  36677777777778888888888887766433 22333222222 3357888888888


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA-VPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      |++.++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+......|+.+.+..+.+++.+.
T Consensus       414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88887653 3467788888888888888888888888887642 2232  446777777777788888888888888764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=6.6e-18  Score=163.62  Aligned_cols=376  Identities=15%  Similarity=0.122  Sum_probs=154.5

Q ss_pred             hcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          166 KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGL  245 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (645)
                      +.|+.++|.+.++++..|  .+|..+..++.+.|++++|++.|.+      .+|..+|..++..+...|++++|+..++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            456667777777766444  3666777777777777777777643      24555677777777777777777776665


Q ss_pred             HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 006437          246 MITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL  325 (645)
Q Consensus       246 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  325 (645)
                      .++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|..+|..+         
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------  148 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------  148 (449)
T ss_dssp             ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence            5553  3345666777777777777777666663       256667777777777777777777777755         


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~  405 (645)
                      ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+...|+.  ...++..|.+.
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~  220 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDR  220 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHC
Confidence            35677777777777777777777766      25667777777777777777776655544444433  44577888888


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHhcCC
Q 006437          406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA--RKIDEAINVYQGIVMNNPAV------NAHVHTAIVDRLIEAGR  477 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~  477 (645)
                      |++++|+.+++...... +-....|+.+..++++-  +++.+..+.|..-  .++++      +...|..++-.|..-++
T Consensus       221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e  297 (449)
T 1b89_A          221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEE  297 (449)
T ss_dssp             TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence            88888888888876543 33455566665555543  3333444433311  12222      45667888888888888


Q ss_pred             HHHHHHHHHHHHHCC-C-------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437          478 CHKAIQLFRRAIVEK-Y-------------PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC  543 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~-~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  543 (645)
                      ++.|....   .+.. .             ..+...|-..+.-|... + ..++.-+.......+  |.   +-.+..+.
T Consensus       298 ~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~-p~~l~~ll~~l~~~l--d~---~r~v~~~~  367 (449)
T 1b89_A          298 YDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-K-PLLLNDLLMVLSPRL--DH---TRAVNYFS  367 (449)
T ss_dssp             HHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-C-GGGHHHHHHHHGGGC--CH---HHHHHHHH
T ss_pred             HHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHhcc--Cc---HHHHHHHH
Confidence            88887643   2221 0             12344455555544421 1 111222222211111  11   23344556


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006437          544 KERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLV  591 (645)
Q Consensus       544 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  591 (645)
                      +.|....+..++..++..+   ...+-.+|-+.|....+++.-..-++
T Consensus       368 ~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~  412 (449)
T 1b89_A          368 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID  412 (449)
T ss_dssp             HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            6677777777776666544   35555666677777777765444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=6.9e-17  Score=160.64  Aligned_cols=289  Identities=14%  Similarity=0.070  Sum_probs=198.8

Q ss_pred             cCCHHHHHH-HHHHHHHcCC-CC--ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437          268 LRRLDMAGY-LWEKMVQNGC-SP--NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD  343 (645)
Q Consensus       268 ~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  343 (645)
                      .|++++|.+ .+++...... .|  +...+..+...+...|++++|...|+++.+... .+...+..+..++...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence            355555555 5554332110 01  234455666666666666666666666665432 245556666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437          344 ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF  423 (645)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  423 (645)
                      |...|+++.+..                                 +.+...+..+...|...|++++|+..++++.+...
T Consensus       117 A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  163 (368)
T 1fch_A          117 AISALRRCLELK---------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP  163 (368)
T ss_dssp             HHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            666666665532                                 11344455556666666666666666666665431


Q ss_pred             CCCHhhHHH---------------HHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          424 TPDNYSFVG---------------LLRGLCGARKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRR  487 (645)
Q Consensus       424 ~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~  487 (645)
                      . +...+..               .+..+...|++++|...++++.+..+.. +..++..+...|.+.|++++|...+++
T Consensus       164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1 1111110               2333347899999999999999886653 578889999999999999999999999


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--
Q 006437          488 AIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--  565 (645)
Q Consensus       488 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--  565 (645)
                      +.+.. +.+..+|..+...+...|++++|+..++++.+.. +.+..++..+...|.+.|++++|...++++.+..+..  
T Consensus       243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            98864 4568899999999999999999999999998742 3368899999999999999999999999998754331  


Q ss_pred             --------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          566 --------DYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       566 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                              ....|..+..+|.+.|+.++|..++++.
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence                    2788999999999999999999887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=4.1e-17  Score=158.11  Aligned_cols=290  Identities=9%  Similarity=0.047  Sum_probs=126.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006437           53 VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRG  132 (645)
Q Consensus        53 ~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  132 (645)
                      +..++...++.+.|.++++.+       +++.+|..+..++.+ .|++++|++.|.+.      ++..+|..++.++...
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~-~g~~~eAIdsfika------~D~~~y~~V~~~ae~~   74 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQ-KGMVKEAIDSYIKA------DDPSSYMEVVQAANTS   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHH-cCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence            445666888999999999888       234599999999999 89999999999652      5777999999999999


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437          133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV  212 (645)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  212 (645)
                      |++++|+..++..++.  .+++.+.+.|+.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+ 
T Consensus        75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-  148 (449)
T 1b89_A           75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-  148 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence            9999999988777764  56678899999999999999999988864   77789999999999999999999999976 


Q ss_pred             HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 006437          213 RKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT  292 (645)
Q Consensus       213 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  292 (645)
                              ..|..++.++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+.     ....-
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~  209 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE  209 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHH
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhh
Confidence                    47999999999999999999999988      278999999999999999999966655433     23333


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHhhHHH
Q 006437          293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE-LKLVP------DSYTFCS  365 (645)
Q Consensus       293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~  365 (645)
                      ...++..|.+.|.+++|..+++...... ......|+-+.-.|++- ++++..+.++.... .+++|      +...|..
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            5578899999999999999999987653 33455666666666654 33333333332221 22222      3455666


Q ss_pred             HHHHHHhcCCcccHHHHH
Q 006437          366 LLSTVCLSGRFSLLPKLV  383 (645)
Q Consensus       366 ll~~~~~~~~~~~a~~~~  383 (645)
                      ++-.|..-++++.|...+
T Consensus       288 ~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhchHHHHHHHH
Confidence            666666677766665554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=1.3e-16  Score=158.66  Aligned_cols=151  Identities=13%  Similarity=0.079  Sum_probs=98.5

Q ss_pred             HcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI  482 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  482 (645)
                      ..|++++|+..++++.+.... ++..++..+...+...|++++|...++++....+. +...+..+..++.+.|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHH
Confidence            555666666666666554211 13555666666666666666666666666665444 4556667777777777777777


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-C-----------HHHHHHHHHHHHhcCCHHH
Q 006437          483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-N-----------AYTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~-----------~~~~~~ll~~~~~~g~~~~  550 (645)
                      ..|+++.+.. +.+...+..+..+|.+.|++++|...++++.+.  .| +           ..+|..+..+|...|++++
T Consensus       272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            7777776653 345667777777777777777777777776652  22 1           5677777778888888887


Q ss_pred             HHHHHHHH
Q 006437          551 VKRLLQDV  558 (645)
Q Consensus       551 a~~~~~~~  558 (645)
                      |..++++.
T Consensus       349 A~~~~~~~  356 (368)
T 1fch_A          349 YGAADARD  356 (368)
T ss_dssp             HHHHHTTC
T ss_pred             HHHhHHHH
Confidence            77776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.74  E-value=5e-16  Score=154.21  Aligned_cols=263  Identities=12%  Similarity=0.087  Sum_probs=186.3

Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      ..+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|...|+++.+..               
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------  129 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ---------------  129 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence            3455555556666666666666666555421 245556666666666666666666666665531               


Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----------HhhHHHHHHHHHc
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-----------NYSFVGLLRGLCG  439 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~  439 (645)
                                        +.+...|..+...|...|++++|+..++++.+..  |+           ...+..+...+..
T Consensus       130 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~  189 (365)
T 4eqf_A          130 ------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVD  189 (365)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------C
T ss_pred             ------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhh
Confidence                              1134445555666666666666666666665532  22           2233445778888


Q ss_pred             CCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI  518 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  518 (645)
                      .|++++|...++++....+.. +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|+.
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999886652 67888999999999999999999999998875 5578899999999999999999999


Q ss_pred             HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------cCHHHHHHHHHHHHhcCChhHH
Q 006437          519 LYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE-----------LDYHTSIRLTKFIFKFHSSSSA  586 (645)
Q Consensus       519 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A  586 (645)
                      .++++.+  ..| +..++..+..+|...|++++|...++++.+..+.           .+...|..+..++...|+.+.|
T Consensus       269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  346 (365)
T 4eqf_A          269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF  346 (365)
T ss_dssp             HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence            9999988  445 5889999999999999999999999999864322           1357889999999999999888


Q ss_pred             HHHHHH
Q 006437          587 VNQLVE  592 (645)
Q Consensus       587 ~~~~~~  592 (645)
                      .+..++
T Consensus       347 ~~~~~~  352 (365)
T 4eqf_A          347 QAANLG  352 (365)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.73  E-value=1.8e-15  Score=143.90  Aligned_cols=250  Identities=13%  Similarity=0.070  Sum_probs=113.2

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCh--hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437          266 RRLRRLDMAGYLWEKMVQNGCSPNV--VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD  343 (645)
Q Consensus       266 ~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  343 (645)
                      ...|+++.|+..++.....  .|+.  .....+.++|...|+++.|...++.    .-.|+..++..+...+...++.++
T Consensus        10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence            3455566665555544322  1221  2334445566666666666554433    123445555556666666666666


Q ss_pred             HHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437          344 ALDVYDGLLELKLVPDS-YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG  422 (645)
Q Consensus       344 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  422 (645)
                      |++.++++...+..|+. ..+..+...+...|++++|.+.++.   ..+...+..+...+.+.|++++|.+.|+++.+..
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            66666666654433322 2222222333333333333333322   1233444444455555555555555555554432


Q ss_pred             CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437          423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV  502 (645)
Q Consensus       423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  502 (645)
                        |+.. ...+.                               ..++..+...|++++|..+|+++.+.. |.+...|+.
T Consensus       161 --p~~~-~~~l~-------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~  205 (291)
T 3mkr_A          161 --EDAT-LTQLA-------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNG  205 (291)
T ss_dssp             --TTCH-HHHHH-------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred             --cCcH-HHHHH-------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence              2221 11111                               112222223344555555555554442 334445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKM-VKRLLQDVIDA  561 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~  561 (645)
                      +..++.+.|++++|+..+++..+  ..| +..++..++..+...|+.++ +.++++++.+.
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            55555555555555555555444  223 34455555555555555433 34455555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.3e-15  Score=148.61  Aligned_cols=155  Identities=15%  Similarity=0.144  Sum_probs=132.7

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      +...|++++|...++++.+..+. +...+..+...+.+.|++++|.+.++++.+.. +.+...|..+...+...|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            66778899999999999887765 77888899999999999999999999998764 45688899999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCChhH
Q 006437          517 YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-----------DYHTSIRLTKFIFKFHSSSS  585 (645)
Q Consensus       517 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~  585 (645)
                      ...++++.+.. +.+..++..+...+...|++++|.+.++++.+..+..           +...+..+..++.+.|+.++
T Consensus       226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            99999988742 3368889999999999999999999999998754432           47788999999999999999


Q ss_pred             HHHHHHHHH
Q 006437          586 AVNQLVEMC  594 (645)
Q Consensus       586 A~~~~~~m~  594 (645)
                      |.+++++..
T Consensus       305 A~~~~~~~l  313 (327)
T 3cv0_A          305 VELTYAQNV  313 (327)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHHHHHH
Confidence            999887543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.73  E-value=7.1e-18  Score=176.25  Aligned_cols=118  Identities=14%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLGLMIT---LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL  296 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  296 (645)
                      ..||+++|++||+.|++++|.++|+.|.+   .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            44666777777777777777777666542   356677777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437          297 IKGFMEAKMF-SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK  337 (645)
Q Consensus       297 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  337 (645)
                      |.++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            7777776653 5666777777777777777777766654433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.72  E-value=6.1e-16  Score=153.58  Aligned_cols=272  Identities=11%  Similarity=0.015  Sum_probs=189.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006437          256 NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCL  335 (645)
Q Consensus       256 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  335 (645)
                      ..+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345555555666666666666666655442 2345556666666666666666666666665542 12455666667777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006437          336 SKMGSYDDALDVYDGLLELKLVPDSY-TFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKL  414 (645)
Q Consensus       336 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  414 (645)
                      ...|++++|...++++.+..  |+.. .+..+                      ......+..+...+...|++++|+..
T Consensus       144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~  199 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNK----------------------KGSPGLTRRMSKSPVDSSVLEGVKEL  199 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CCHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhC--ccchHHHhhh----------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence            77777777777777766531  2110 00000                      01123345566778889999999999


Q ss_pred             HHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          415 YNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY  493 (645)
Q Consensus       415 ~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  493 (645)
                      ++++.+.... ++..++..+...+...|++++|...++++.+..+. +..++..+..+|.+.|++++|...|+++.+.. 
T Consensus       200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-  277 (365)
T 4eqf_A          200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-  277 (365)
T ss_dssp             HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            9999886422 15778899999999999999999999999988766 78889999999999999999999999999874 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-------------NAYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      +.+..+|..+..+|.+.|++++|...|+++.+.  .|             +..+|..+..++...|+.+.+..+.++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            446889999999999999999999999998762  23             257899999999999999988877654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=174.89  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=123.2

Q ss_pred             CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 006437          252 SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV---QNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFH  328 (645)
Q Consensus       252 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  328 (645)
                      ..-..+||++|++|++.|++++|.++|++|.   ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            4446699999999999999999999998876   4589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC
Q 006437          329 NVLIDCLSKMGS-YDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE  387 (645)
Q Consensus       329 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  387 (645)
                      +++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~  263 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS  263 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence            999999999997 58899999999999999999999999988888777777766654444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=5.3e-14  Score=144.94  Aligned_cols=143  Identities=10%  Similarity=-0.030  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHH-HHHhcCCHHHHHH
Q 006437          442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV--VSYTVAIR-GLLEGGRTEEAYI  518 (645)
Q Consensus       442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~  518 (645)
                      ..+.|...++......+. +...+..+...|...|++++|.+.|++.++....+..  ..+..+.. .+.+.|+.++|+.
T Consensus       315 ~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~  393 (472)
T 4g1t_A          315 LIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH  393 (472)
T ss_dssp             HHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            457788888888777655 5566788999999999999999999999887533221  12233332 3457789999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          519 LYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       519 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      .|++..+  +.|+.......         ...+.+++++..+.++. ++.+|..|+.+|...|++++|++.|++..+.|
T Consensus       394 ~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          394 HFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            9999988  66765433222         34455666666665554 78899999999999999999999999998765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=5.1e-15  Score=140.80  Aligned_cols=253  Identities=11%  Similarity=0.108  Sum_probs=191.2

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006437          336 SKMGSYDDALDVYDGLLELKLVPDS--YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVK  413 (645)
Q Consensus       336 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  413 (645)
                      ...|++..|+..++....  ..|+.  .....+..+|...|+++.|...++. ...|+..++..+...+...++.++|++
T Consensus        10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-~~~~~~~a~~~la~~~~~~~~~~~A~~   86 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-SSAPELQAVRMFAEYLASHSRRDAIVA   86 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence            344555555555544332  12222  2223344555555555555555533 234566778888899999999999999


Q ss_pred             HHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          414 LYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       414 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      .++++...+..|+ ...+..+...+...|++++|.+.+++      ..+...+..++..|.+.|++++|.+.++++.+..
T Consensus        87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            9999998775565 45556666889999999999999987      3477889999999999999999999999999875


Q ss_pred             CCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437          493 YPLDVVSY---TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT  569 (645)
Q Consensus       493 ~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  569 (645)
                        |+....   ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|.+.++++.+..+. ++.+
T Consensus       161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~  236 (291)
T 3mkr_A          161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET  236 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence              553211   22334444568999999999999985 3558889999999999999999999999999987765 8889


Q ss_pred             HHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCChh
Q 006437          570 SIRLTKFIFKFHSSSS-AVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       570 ~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~  603 (645)
                      +..++..+...|+.++ +.++++++.+  ..|+..
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~  269 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence            9999999999999976 5689999884  567766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.69  E-value=4.5e-15  Score=144.69  Aligned_cols=260  Identities=8%  Similarity=-0.032  Sum_probs=161.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437           86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF  165 (645)
Q Consensus        86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  165 (645)
                      +..+...+.. .|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus        24 ~~~~a~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           24 PMEEGLSMLK-LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            3344444444 455555555555555443 2344455555555555555555555555555442 334455555555555


Q ss_pred             hcCCHhHHHHHHhhcC---CCChhhHHHH--------------HH-HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437          166 KIGRVDLGIKVLKETQ---LPNFLSFNIA--------------LC-NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILL  227 (645)
Q Consensus       166 ~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  227 (645)
                      ..|++++|.+.|++..   +.+...+..+              .. .+...|++++|.+.++++.+.. +.+...+..+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  179 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG  179 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            5555555555555433   1111122221              22 2666777888888888877653 23566777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChh
Q 006437          228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFS  307 (645)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  307 (645)
                      ..+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence            88888888888888888877654 3356777788888888888888888888877653 235667777777888888888


Q ss_pred             HHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          308 IAFSFLDMLESEGHAP-----------DLVFHNVLIDCLSKMGSYDDALDVYDGL  351 (645)
Q Consensus       308 ~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~  351 (645)
                      +|...++++.+.....           +...+..+..++.+.|+.++|..++++.
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8888887776542221           3566777777788888888887777643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=5.8e-14  Score=144.63  Aligned_cols=199  Identities=12%  Similarity=-0.004  Sum_probs=85.5

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----C
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARV--------GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF----G  149 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~  149 (645)
                      ....||.+..++.. .|++++|++.|++..+.        ..+....+|..+..+|...|++++|...+++..+.    .
T Consensus        50 ~a~~yn~Lg~~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           50 KATMCNLLAYLKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34556666666666 56666666666654331        11223445556666666666666666666555421    0


Q ss_pred             --C-CCCHHhHHHHHHHHHhc--CCHhHHHHHHhhcC---CCChhhHHHHHHH---HHhcCCcchHHHHHHHHHHCCCCC
Q 006437          150 --F-TPNTFARNIVMDVLFKI--GRVDLGIKVLKETQ---LPNFLSFNIALCN---LCKLNDVSNVKDVIGMMVRKGFYP  218 (645)
Q Consensus       150 --~-~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~---~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~p  218 (645)
                        . .....++..+..++...  +++++|++.|++..   +.+...+..+..+   +...++.++|++.+++..+.. +.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence              0 11223333333333332  23555555555432   2222222222222   223344445555554444432 11


Q ss_pred             CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          219 NVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       219 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      +..++..+...+..    .++.++|.+.++...... +.+..++..+...|...|++++|.+.+++..+
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            22333333322222    233444444444444332 22333444444444444444444444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=4.8e-14  Score=128.03  Aligned_cols=199  Identities=11%  Similarity=0.024  Sum_probs=161.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV  469 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  469 (645)
                      ++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++..+. +...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            455677778888999999999999999988763 345777888888999999999999999999998876 777888899


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006437          470 DRLIEA-----------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM  538 (645)
Q Consensus       470 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  538 (645)
                      .++.+.           |++++|...+++.++.. |.+...|..+..++...|++++|+..|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            999999           99999999999998875 4468889999999999999999999999998866  788899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          539 LLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       539 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..++...|++++|...++++.+..+. +...+..+..++.+.|++++|++.+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            99999999999999999999987655 78889999999999999999999988765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.59  E-value=3e-13  Score=137.48  Aligned_cols=144  Identities=6%  Similarity=-0.062  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG-----RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----G  510 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  510 (645)
                      .+++++|...|++..+.+   +...+..+..+|. .|     ++++|.+.|++.. .|   ++..+..|...|..    .
T Consensus       264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~  335 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGK  335 (452)
T ss_dssp             GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSS
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCC
Confidence            455555555555555444   3444444554444 33     5666666666555 32   55555555555554    2


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437          511 GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA  586 (645)
Q Consensus       511 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  586 (645)
                      .+.++|...|++..+.|.   ......|...|..    ..+.++|..+++...+.|.. +.......+......++..+|
T Consensus       336 ~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a  411 (452)
T 3e4b_A          336 VYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEG  411 (452)
T ss_dssp             CCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHH
Confidence            366666666666665442   2233444444442    34666677776666665532 222221222222233455566


Q ss_pred             HHHHHHHHH
Q 006437          587 VNQLVEMCN  595 (645)
Q Consensus       587 ~~~~~~m~~  595 (645)
                      .++.++..+
T Consensus       412 ~~~~~~~~~  420 (452)
T 3e4b_A          412 QRLVQQELA  420 (452)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.5e-13  Score=126.22  Aligned_cols=229  Identities=14%  Similarity=0.102  Sum_probs=151.9

Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL--VPDSYTFCSLLS  368 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~  368 (645)
                      ..|..+...+...|++++|...|+++.+..  .+...+..+..++...|++++|...++++.+...  .++.        
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------   75 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--------   75 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch--------
Confidence            445666666777777777777777776665  5666777777777778888888887777665210  0000        


Q ss_pred             HHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006437          369 TVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAIN  448 (645)
Q Consensus       369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  448 (645)
                                          ......+..+...+...|++++|+..|++..+.  .|+.       ..+...|++++|..
T Consensus        76 --------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           76 --------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK  126 (258)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence                                001356677778888889999999999888874  3442       23445566777777


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437          449 VYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV  528 (645)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  528 (645)
                      .++.+....+. +...+..+...+...|++++|...++++.+.. +.+...|..+...+.+.|++++|+..++++.+.. 
T Consensus       127 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-  203 (258)
T 3uq3_A          127 KAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-  203 (258)
T ss_dssp             HHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence            77777665443 45566667777777777777777777776654 3456667777777777777777777777766632 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          529 PPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       529 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      +.+..++..+...+...|++++|.+.++++.+.
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            224666666777777777777777777766653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7e-13  Score=124.09  Aligned_cols=224  Identities=13%  Similarity=0.082  Sum_probs=152.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HhhHH
Q 006437          256 NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH--APD----LVFHN  329 (645)
Q Consensus       256 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  329 (645)
                      ..+..+...+...|++++|.+.|++..+..  .+...|..+..++...|++++|...+++..+...  .++    ...+.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            345555555666666666666666665544  4555566666666666666666666665554311  111    45666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437          330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN  409 (645)
Q Consensus       330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  409 (645)
                      .+...+...|++++|...|+++.+..  |+.                                       ..+.+.|+++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------------------------------------~~~~~~~~~~  122 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA---------------------------------------DILTKLRNAE  122 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH---------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh---------------------------------------HHHHHHhHHH
Confidence            67777777777777777777776632  211                                       2244556677


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI  489 (645)
Q Consensus       410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  489 (645)
                      +|...++.+.... +.+...+..+...+...|++++|...++++....+. +...+..+..++.+.|++++|...++++.
T Consensus       123 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          123 KELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            7777777777642 223456667777777888888888888888777655 66778888888888888888888888888


Q ss_pred             HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          490 VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       490 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +.. +.+...|..+..++.+.|++++|...+++..+
T Consensus       201 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          201 EKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            764 44577888888888888999999888888776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.57  E-value=7.2e-13  Score=134.63  Aligned_cols=381  Identities=8%  Similarity=-0.037  Sum_probs=195.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCH---hHHHHHHhhcCCCChhhHHHHHHHHHhcC--
Q 006437          125 FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRV---DLGIKVLKETQLPNFLSFNIALCNLCKLN--  199 (645)
Q Consensus       125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g--  199 (645)
                      +...+.+.|++++|.++|++..+.|   ++.++..|..+|...|+.   ++|.+.|++....+...+..+...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            4555666777777777777776655   233334455555555555   56666665544334444444444333322  


Q ss_pred             ---CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 006437          200 ---DVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGY  276 (645)
Q Consensus       200 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  276 (645)
                         ++++|+..|++..+.|.   ...+..|...|...+..+++                                .++.+
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~--------------------------------~~a~~  130 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPN--------------------------------VNAQQ  130 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTT--------------------------------CCHHH
T ss_pred             CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCC--------------------------------HHHHH
Confidence               34455555555444331   11333344444333222211                                12223


Q ss_pred             HHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 006437          277 LWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMG---SYDDALDVYDGLLE  353 (645)
Q Consensus       277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~  353 (645)
                      .+......|   +...+..+...|...+.++++......+.+.-...+...+..+...|...|   +.++|++.|++..+
T Consensus       131 ~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~  207 (452)
T 3e4b_A          131 QISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS  207 (452)
T ss_dssp             HHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence            333333222   233444445555555533333332222211111112225555555566666   56666666666665


Q ss_pred             CCCCCCHhhHHHHHHHHHhc----CCcccHHHHHhcCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCC
Q 006437          354 LKLVPDSYTFCSLLSTVCLS----GRFSLLPKLVCGLEVEADLVVYNALLSY-F--CKAGFPNQAVKLYNTMLDKGFTPD  426 (645)
Q Consensus       354 ~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~  426 (645)
                      .| .++...+..+...|...    ++.++|.+.|+... ..++..+..+... +  ...+++++|+..|++..+.|   +
T Consensus       208 ~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~  282 (452)
T 3e4b_A          208 RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q  282 (452)
T ss_dssp             TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred             CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence            54 22333333444444333    45556666664433 4456666666665 3  45888999999999988876   5


Q ss_pred             HhhHHHHHHHHHcCC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 006437          427 NYSFVGLLRGLCGAR-----KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AGRCHKAIQLFRRAIVEKYPLDV  497 (645)
Q Consensus       427 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~  497 (645)
                      ...+..+...|. .|     ++++|...|++.. .+   +...+..+..+|..    ..++++|...|++..+.|   +.
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~  354 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QN  354 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CT
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hH
Confidence            566666666665 44     8999999998887 32   66677777777776    348999999999988876   56


Q ss_pred             hhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       498 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .....|...|..    ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus       355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            667777777764    458888999888888766 23222222222222223345555555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=5.3e-13  Score=123.70  Aligned_cols=206  Identities=9%  Similarity=0.069  Sum_probs=161.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      ....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++....+. +...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence            45567777888889999999999999998753 346778888888999999999999999999888765 7788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  550 (645)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998875 4578889999999999999999999999998742 3468889999999999999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          551 VKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      |...++++.+.... +...+..+..+|.+.|++++|.+.++++.+.  .|+..
T Consensus       178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~  227 (243)
T 2q7f_A          178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM  227 (243)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence            99999999886554 6889999999999999999999999999864  45544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=2.3e-12  Score=120.22  Aligned_cols=206  Identities=14%  Similarity=0.045  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      ...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            5667888889999999999999999988763 346778888899999999999999999999988765 67888999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  550 (645)
                      |...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998732234 57788899999999999999999999998743 3368889999999999999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          551 VKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      |...++++.+.... +...+..+...+.+.|+.++|.+.++++.+.  .|+..
T Consensus       194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~  243 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSL  243 (252)
T ss_dssp             HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSH
T ss_pred             HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCH
Confidence            99999999886553 7888899999999999999999999999864  45544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=2.4e-11  Score=114.82  Aligned_cols=224  Identities=13%  Similarity=0.060  Sum_probs=177.8

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437          324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC  403 (645)
Q Consensus       324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~  403 (645)
                      +..++..+...+...|++++|...|++..+.+                                   +...+..+...|.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~   49 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------------------ENSGCFNLGVLYY   49 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHH
Confidence            34555666677777777777777777776622                                   2334455566666


Q ss_pred             H----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-
Q 006437          404 K----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE-  474 (645)
Q Consensus       404 ~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  474 (645)
                      .    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...+++..+.+   +...+..+...|.. 
T Consensus        50 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~  123 (273)
T 1ouv_A           50 QGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG  123 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred             cCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence            7    788888888888887765   56677777778888    888899988888888775   66778888888888 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 006437          475 ---AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK---  544 (645)
Q Consensus       475 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---  544 (645)
                         .+++++|.+.|++..+.+   +...+..+...|..    .+++++|+..+++..+.+   +...+..+...|..   
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~  197 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG  197 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS
T ss_pred             CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence               899999999999988876   67778888888887    889999999999988754   56778888888888   


Q ss_pred             -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006437          545 -ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       545 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g  597 (645)
                       .+++++|.+.+++..+.+   +...+..+..+|.+    .+++++|.+.+++..+.|
T Consensus       198 ~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          198 ATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence             899999999999988865   36778888889988    899999999999998765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=4.6e-12  Score=115.68  Aligned_cols=207  Identities=9%  Similarity=-0.011  Sum_probs=177.4

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++....+. +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            45678888899999999999999999988863 345778888999999999999999999999988765 6778899999


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437          471 RLIEA-GRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       471 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  547 (645)
                      .+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.+.  .| +...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence            99999 99999999999998832223 3678899999999999999999999999874  45 58889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+..  ..|+..
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~  216 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence            999999999998865523777888888899999999999999999874  356554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=7.3e-13  Score=120.17  Aligned_cols=194  Identities=9%  Similarity=0.034  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437           81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV  160 (645)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  160 (645)
                      +++..+..+...+.+ .|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus         3 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYA-LGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            355556666666666 566666666666666554 3455666666666666666666666666666553 3445566666


Q ss_pred             HHHHHhc-----------CCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 006437          161 MDVLFKI-----------GRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL  226 (645)
Q Consensus       161 l~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  226 (645)
                      ..++...           |++++|+..|++..   +.+...+..+...+...|++++|+..|++..+..  .+...+..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            6666655           55555555554432   2233344444444444444444444444444443  344444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEK  280 (645)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  280 (645)
                      ..++...|++++|...|+...+.. +.+...+..+...+...|++++|.+.|++
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            444444444444444444444432 11334444444444444444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.53  E-value=2e-12  Score=122.24  Aligned_cols=238  Identities=15%  Similarity=0.087  Sum_probs=188.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437          327 FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG  406 (645)
Q Consensus       327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g  406 (645)
                      .+......+...|++++|...|+++.+..  |+                               +...+..+...|...|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-------------------------------~~~~~~~l~~~~~~~~   51 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YN-------------------------------SPYIYNRRAVCYYELA   51 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC-------------------------------CSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-------------------------------cHHHHHHHHHHHHHHh
Confidence            44556677888899999999999888742  21                               2234666777888999


Q ss_pred             ChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          407 FPNQAVKLYNTMLDKGFTPD--NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       407 ~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      ++++|+..+++..+.+..|+  ...+..+...+...|++++|...+++..+..+. +...+..+..+|...|++++|...
T Consensus        52 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  130 (272)
T 3u4t_A           52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQY  130 (272)
T ss_dssp             CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999888432222  234788888999999999999999999988766 667899999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN---IKMVKRLLQDVID  560 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~  560 (645)
                      +++..+.. +.+...|..+...+...+++++|++.++++.+  ..| +...+..+...+...|+   +++|...++++.+
T Consensus       131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            99998763 45677888888344445699999999999988  455 57788888888888888   8889999998876


Q ss_pred             CC-CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          561 AR-IELD------YHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       561 ~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .. -.|+      ...|..+...|.+.|++++|.+.++++.+  +.|+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~  255 (272)
T 3u4t_A          208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNK  255 (272)
T ss_dssp             HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHH
Confidence            32 1122      36788899999999999999999999985  456655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.52  E-value=2.1e-10  Score=120.37  Aligned_cols=439  Identities=12%  Similarity=0.009  Sum_probs=254.6

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHH
Q 006437           99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIK  175 (645)
Q Consensus        99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~  175 (645)
                      ...+.+..|++..... +-|..+|..+++.+.+.+.++.+..+|+.+... ++.+...|...+..-.+.|+   ++.+.+
T Consensus        47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            3455566667666665 569999999999999999999999999999876 47788889999988888888   999999


Q ss_pred             HHhhcC--C---CChhhHHHHHHHHHhcCCc--------chHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH--------
Q 006437          176 VLKETQ--L---PNFLSFNIALCNLCKLNDV--------SNVKDVIGMMVR-KGF-YPN-VRMFEILLNCFC--------  231 (645)
Q Consensus       176 ~~~~~~--~---~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~--------  231 (645)
                      +|++..  .   |++..|...+.-..+.++.        +.+.++|+.... .|. .++ ...|...+....        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999865  2   7777788777766665554        233466666543 455 443 456666665443        


Q ss_pred             -hcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHH
Q 006437          232 -KMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAF  310 (645)
Q Consensus       232 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  310 (645)
                       ..++++.+.++|+.+.......-..+|......-...+. ..+.+++.+                     ...+++.|.
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar  262 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR  262 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence             234566777788777743211112233222111100000 001111111                     112233344


Q ss_pred             HHHHHHHhC--CCC---CCH--------------------hhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCC
Q 006437          311 SFLDMLESE--GHA---PDL--------------------VFHNVLIDCLSKMG-------SYDDALDVYDGLLELKLVP  358 (645)
Q Consensus       311 ~~~~~~~~~--~~~---~~~--------------------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~  358 (645)
                      ..+.++...  ++.   |..                    ..|...+.---..+       ..+.+..+|++....    
T Consensus       263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----  338 (679)
T 4e6h_A          263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----  338 (679)
T ss_dssp             HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----
Confidence            444333211  110   000                    01111111100000       011122223332221    


Q ss_pred             CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYNTMLDKGFTPDNYSFVGLLRGL  437 (645)
Q Consensus       359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~  437 (645)
                                                   .......|-..+..+...|+.++|. .+|++.... ++.+...+...+...
T Consensus       339 -----------------------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~e  388 (679)
T 4e6h_A          339 -----------------------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQY  388 (679)
T ss_dssp             -----------------------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             -----------------------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence                                         1224555666666666667777775 777776653 333444455566666


Q ss_pred             HcCCCHHHHHHHHHHHHHcCC---------CC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437          438 CGARKIDEAINVYQGIVMNNP---------AV------------NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD  496 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  496 (645)
                      ...|+++.|.++|+.++....         .|            ...+|...++...+.|..+.|..+|.++.+......
T Consensus       389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~  468 (679)
T 4e6h_A          389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT  468 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence            677777777777777765310         12            233567777777778888888888888876510112


Q ss_pred             hhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 006437          497 VVSYTVAIRGLLEG-GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIRL  573 (645)
Q Consensus       497 ~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l  573 (645)
                      ...|-..+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|+.+|++.++....+  ....|..+
T Consensus       469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~  547 (679)
T 4e6h_A          469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV  547 (679)
T ss_dssp             THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            33343333223333 3478888888887763 23355566677777777888888888888887654422  35677778


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHC
Q 006437          574 TKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       574 ~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ++.-.+.|..+.+.++.++|.+.
T Consensus       548 ~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          548 IFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888888888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=9.3e-12  Score=117.54  Aligned_cols=176  Identities=11%  Similarity=0.077  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      |..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++..+. +...+..+...+..
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH
Confidence            3334444444555555555555444432 112344555555555555555555555555544333 34444444422222


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHh
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIA-VPPN------AYTYRVMLLSFCK  544 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~  544 (645)
                      .+++++|.+.|+++.+.. +.+...+..+...+...|+   .++|...++++.+.. -.|+      ..+|..+...|..
T Consensus       155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            336666666666666543 2335555556666666665   556666666654321 1122      2456666667777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437          545 ERNIKMVKRLLQDVIDARIELDYHTSIRLT  574 (645)
Q Consensus       545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  574 (645)
                      .|++++|.+.++++.+..+. ++.....+.
T Consensus       234 ~~~~~~A~~~~~~al~~~p~-~~~a~~~l~  262 (272)
T 3u4t_A          234 NRDKVKADAAWKNILALDPT-NKKAIDGLK  262 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHhcCcc-HHHHHHHhh
Confidence            77777777777777765543 444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.50  E-value=6.9e-10  Score=116.51  Aligned_cols=448  Identities=8%  Similarity=-0.010  Sum_probs=253.4

Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHH
Q 006437           63 DLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM---YGMVL  139 (645)
Q Consensus        63 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~  139 (645)
                      +.+.+..|+......+  .|...|..++..+.+ .+.++.+..+|+++...- +.+...+...+..-.+.++   ++.+.
T Consensus        48 ~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~-~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVS-LKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             CSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence            3345555555444434  499999999999988 799999999999999874 6677888888888888888   99999


Q ss_pred             HHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCH--------hHHHHHHhhcC-------CCChhhHHHHHHHHH-------
Q 006437          140 EAFDEMGRFG-FTPNTFARNIVMDVLFKIGRV--------DLGIKVLKETQ-------LPNFLSFNIALCNLC-------  196 (645)
Q Consensus       140 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~-------~~~~~~~~~ll~~~~-------  196 (645)
                      ++|++..... .+|++..|...+....+.++.        +.+.++|+...       ..+...|...+.-..       
T Consensus       124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~  203 (679)
T 4e6h_A          124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK  203 (679)
T ss_dssp             HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence            9999999764 248899999988877766653        33457777532       223456777776543       


Q ss_pred             --hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437          197 --KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA  274 (645)
Q Consensus       197 --~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  274 (645)
                        ..++++.+..+|+..+......-..+|......--..+. ..+.+++.+.                     ..+++.|
T Consensus       204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A  261 (679)
T 4e6h_A          204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA  261 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence              234567788888888753111112233222211111111 1122221111                     1123333


Q ss_pred             HHHHHHHHHc--CC----C-----------C-C-------hhchHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCC
Q 006437          275 GYLWEKMVQN--GC----S-----------P-N-------VVTYTSLIKGFMEAK-------MFSIAFSFLDMLESEGHA  322 (645)
Q Consensus       275 ~~~~~~m~~~--~~----~-----------~-~-------~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~  322 (645)
                      ...+.++...  ++    +           | .       ...|...+.---..+       ..+.+..+|++.... +.
T Consensus       262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p  340 (679)
T 4e6h_A          262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC  340 (679)
T ss_dssp             HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC
Confidence            3444333211  11    0           0 0       122333333222211       123345667766654 23


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCC------------C
Q 006437          323 PDLVFHNVLIDCLSKMGSYDDAL-DVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEV------------E  389 (645)
Q Consensus       323 ~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~  389 (645)
                      -....|...+..+...|+.++|. ++|++.... ++.+...+-.++....+.|+++.|.++++..-.            .
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~  419 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD  419 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            35566666666677778877886 888887763 334444555566666666777666666632210            0


Q ss_pred             C------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 006437          390 A------------DLVVYNALLSYFCKAGFPNQAVKLYNTMLDK-GFTPDNYSFVGLLRGLCGA-RKIDEAINVYQGIVM  455 (645)
Q Consensus       390 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~  455 (645)
                      |            ....|-..+....+.|..+.|..+|....+. +. +....|...+..-.+. ++.+.|..+|+..++
T Consensus       420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            2            1224555566666666677777777766654 11 1112222222111222 346777777777666


Q ss_pred             cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437          456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       456 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  533 (645)
                      ..+. +...+...++.....|+.+.|..+|++.+....++  ....|...+..-.+.|+.+.+..+.+++.+  ..|+..
T Consensus       499 ~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~  575 (679)
T 4e6h_A          499 YFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVN  575 (679)
T ss_dssp             HHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCC
T ss_pred             HCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence            6433 45555666666666677777777777766543111  234566666666666777777777777766  345544


Q ss_pred             HHHHHHHHH
Q 006437          534 TYRVMLLSF  542 (645)
Q Consensus       534 ~~~~ll~~~  542 (645)
                      ....+.+-|
T Consensus       576 ~~~~f~~ry  584 (679)
T 4e6h_A          576 KLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            444444444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=3.6e-12  Score=125.25  Aligned_cols=242  Identities=10%  Similarity=0.043  Sum_probs=198.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~  405 (645)
                      ..|..+...+.+.|++++|+..++++++..                                 ..+...|+.+...+...
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---------------------------------P~~~~a~~~~g~~l~~~  144 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN---------------------------------AANYTVWHFRRVLLKSL  144 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHc
Confidence            456777788888999999999999988742                                 22466778888888899


Q ss_pred             CC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          406 GF-PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       406 g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      |+ +++|+..|++..+.. +-+...|..+..++...|++++|...++++++..+. +...|..+..++.+.|++++|+..
T Consensus       145 g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~  222 (382)
T 2h6f_A          145 QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQY  222 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHH
Confidence            96 999999999998864 235678888888999999999999999999998877 888999999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHH
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLE-GGRTEEA-----YILYSQMKHIAVPP-NAYTYRVMLLSFCKER--NIKMVKRLL  555 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~  555 (645)
                      ++++++.. +.+...|+.+..++.+ .|..++|     +..+++..+  +.| +...|..+...+...|  ++++|.+.+
T Consensus       223 ~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~  299 (382)
T 2h6f_A          223 VDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQL  299 (382)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence            99999876 4578899999999999 6665777     588988887  556 6778888888898888  689999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCChh--hhHHHh
Q 006437          556 QDVIDARIELDYHTSIRLTKFIFKFH---------SSSSAVNQLVEM-CNLGLIPDEM--WRKLGL  609 (645)
Q Consensus       556 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~--w~~~~~  609 (645)
                      .++ +.... +...+..++.+|.+.|         ..++|+++++++ .  .+.|...  |.....
T Consensus       300 ~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~  361 (382)
T 2h6f_A          300 LDL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK--EKDTIRKEYWRYIGR  361 (382)
T ss_dssp             HHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHH
T ss_pred             HHh-ccCCC-CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHH
Confidence            887 44333 6788999999998874         258999999998 5  4677765  665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.50  E-value=6.8e-11  Score=111.65  Aligned_cols=224  Identities=14%  Similarity=-0.005  Sum_probs=144.0

Q ss_pred             hhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 006437          290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK----MGSYDDALDVYDGLLELKLVPDSYTFCS  365 (645)
Q Consensus       290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  365 (645)
                      ..++..+...+...|++++|...|++..+.   -+...+..+...+..    .+++++|...|++..+.+          
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------   72 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------   72 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------
Confidence            344444555555555666666655555552   233445555555555    666666666666655532          


Q ss_pred             HHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--
Q 006437          366 LLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCK----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG--  439 (645)
Q Consensus       366 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--  439 (645)
                                               +...+..+...|..    .+++++|+..|++..+.+   +...+..+...+..  
T Consensus        73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~  124 (273)
T 1ouv_A           73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK  124 (273)
T ss_dssp             -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred             -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence                                     22233344444555    666666666666666653   45556666666666  


Q ss_pred             --CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 006437          440 --ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----  509 (645)
Q Consensus       440 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  509 (645)
                        .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    
T Consensus       125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~  198 (273)
T 1ouv_A          125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA  198 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred             CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence              677777777777776654   45556666677776    778888888888877764   56677777777877    


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006437          510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~  563 (645)
                      .+++++|+..+++..+.+  | ...+..+...|..    .+++++|.+.+++..+.+.
T Consensus       199 ~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          199 TKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             CccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            788888888888877743  2 6667777777777    7888888888888877653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=1.4e-11  Score=114.81  Aligned_cols=129  Identities=15%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      +..+...|...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~  186 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY  186 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence            3344444444555555555555544421122 2233333344444444444444444444443322 2333444444444


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ..|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+
T Consensus       187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4444444444444444322 22333444444444444444444444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=1.5e-12  Score=123.20  Aligned_cols=220  Identities=16%  Similarity=0.014  Sum_probs=127.2

Q ss_pred             cCCChHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437           59 NCPSDLIALSFFIWCAKQRDYF--HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG  136 (645)
Q Consensus        59 ~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  136 (645)
                      ..++++.|+..|+.+....+..  .++..|..+...+.. .|+++.|...|+++.... +.+..++..+...|...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            3456677777777776642211  245666667777777 677777777777777664 345677777777777777777


Q ss_pred             HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437          137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK  214 (645)
Q Consensus       137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  214 (645)
                      +|...|+++.+.. +.+..++..+..+|...|++++|...|++..  .|+.......+..+...|++++|...+++....
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            7777777777653 3456666667777777777777777666654  233333333333344456666666666555443


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          215 GFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL---SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       215 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      . +++...+ .++..+...++.++|...+....+.....   +...+..+...|.+.|++++|.+.|++..+
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2 1222222 24444555555555665555554321110   134455555555555555555555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.48  E-value=3.5e-12  Score=118.17  Aligned_cols=213  Identities=14%  Similarity=0.166  Sum_probs=158.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437          324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC  403 (645)
Q Consensus       324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~  403 (645)
                      ....+..+...+...|++++|...|+++.+..                                 +.+...+..+...+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------------------~~~~~~~~~la~~~~   68 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---------------------------------KEDAIPYINFANLLS   68 (243)
T ss_dssp             --------------------CCTTHHHHHTTC---------------------------------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---------------------------------cccHHHHHHHHHHHH
Confidence            34455556666777777777777777766531                                 224566777888889


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ  483 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  483 (645)
                      ..|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+.+.|++++|..
T Consensus        69 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~  146 (243)
T 2q7f_A           69 SVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALP  146 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999988763 346777888888999999999999999999888765 67788889999999999999999


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      .++++.+.. +.+...+..+...+.+.|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++++.+..+
T Consensus       147 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          147 YLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            999998764 4578889999999999999999999999988743 34688899999999999999999999999988665


Q ss_pred             CcCHHHHHHHH
Q 006437          564 ELDYHTSIRLT  574 (645)
Q Consensus       564 ~~~~~~~~~l~  574 (645)
                      . +...+..+.
T Consensus       225 ~-~~~~~~~~~  234 (243)
T 2q7f_A          225 D-HMLALHAKK  234 (243)
T ss_dssp             T-CHHHHHHHT
T ss_pred             c-hHHHHHHHH
Confidence            4 455554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.47  E-value=1.3e-11  Score=121.21  Aligned_cols=247  Identities=9%  Similarity=0.039  Sum_probs=168.9

Q ss_pred             hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS-YDDALDVYDGLLELKLVPDSYTFCSLLST  369 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  369 (645)
                      ..|..+...+...|++++|+..++++.+... -+...|+.+..++...|+ +++|+..|+++.+..              
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--------------  162 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--------------  162 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence            3455556666666777777777777666432 245566666777777775 777777777777632              


Q ss_pred             HHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437          370 VCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV  449 (645)
Q Consensus       370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  449 (645)
                                         ..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|...
T Consensus       163 -------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~  222 (382)
T 2h6f_A          163 -------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQY  222 (382)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             -------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHH
Confidence                               2244556666666667777777777777777653 22456667777777777777777777


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 006437          450 YQGIVMNNPAVNAHVHTAIVDRLIE-AGRCHKA-----IQLFRRAIVEKYPLDVVSYTVAIRGLLEGG--RTEEAYILYS  521 (645)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~  521 (645)
                      ++++++..+. +...|+.+..++.+ .|..++|     +..|++++... +-+...|+.+...+.+.|  ++++|++.+.
T Consensus       223 ~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~  300 (382)
T 2h6f_A          223 VDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLL  300 (382)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence            7777777666 66777777777777 5554565     47777777764 446778888888888877  6888888888


Q ss_pred             HHhhCCCCC-CHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 006437          522 QMKHIAVPP-NAYTYRVMLLSFCKER---------NIKMVKRLLQDV-IDARIELDYHTSIRLTKFIF  578 (645)
Q Consensus       522 ~m~~~~~~p-~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~  578 (645)
                      ++ +  ..| +...+..+...|.+.|         ..++|.++++++ .+.++. ....|..+...+.
T Consensus       301 ~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~  364 (382)
T 2h6f_A          301 DL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ  364 (382)
T ss_dssp             HH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred             Hh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence            87 3  344 6778888888887764         258899999888 665443 4566666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=4.4e-11  Score=109.07  Aligned_cols=204  Identities=9%  Similarity=0.007  Sum_probs=161.5

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437          324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC  403 (645)
Q Consensus       324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~  403 (645)
                      +...+..+...+...|++++|.+.++++.+..                                 +.+...+..+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~   53 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ   53 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence            34566777788888888888888888877642                                 223456777778888


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA-RKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKA  481 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a  481 (645)
                      ..|++++|...+++..+.. +.+...+..+...+... |++++|...++.+.+....| +...+..+..++...|++++|
T Consensus        54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  132 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA  132 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence            8899999999998888753 33567788888888999 99999999999988832222 366788888999999999999


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVP-PNAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus       133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            99999988764 4467888899999999999999999999988743 3 4677777777888899999999999998876


Q ss_pred             CCC
Q 006437          561 ARI  563 (645)
Q Consensus       561 ~~~  563 (645)
                      ..+
T Consensus       211 ~~p  213 (225)
T 2vq2_A          211 NFP  213 (225)
T ss_dssp             HCT
T ss_pred             hCC
Confidence            543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=2.5e-12  Score=121.67  Aligned_cols=243  Identities=10%  Similarity=-0.047  Sum_probs=163.7

Q ss_pred             cCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 006437           97 TGRFETVRGIVGELARVGC---VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLG  173 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A  173 (645)
                      .|+++.|+..++++.+...   +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            5778889999988887632   1245677788888888999999999999888764 45678888888888888888888


Q ss_pred             HHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437          174 IKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLG  250 (645)
Q Consensus       174 ~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (645)
                      .+.|++..   +.+...+..+...+...|++++|.+.|+++.+..  |+.......+..+...|++++|...++......
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            88888765   4456677788888888888888888888887653  444444444555566678888888887766553


Q ss_pred             CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437          251 TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS---PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF  327 (645)
Q Consensus       251 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  327 (645)
                       +++...+ .++..+...++.++|.+.++........   .+...+..+...|...|++++|...|++..+..  |+.  
T Consensus       175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--  248 (275)
T 1xnf_A          175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--  248 (275)
T ss_dssp             -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred             -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence             2233333 3666667777777777777776543210   014566667777777777777777777776652  321  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 006437          328 HNVLIDCLSKMGSYDDALDVY  348 (645)
Q Consensus       328 ~~~ll~~~~~~~~~~~a~~~~  348 (645)
                      +.....++...|++++|++.+
T Consensus       249 ~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhhHHHH
Confidence            222234455566666665544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=2.8e-11  Score=106.61  Aligned_cols=171  Identities=11%  Similarity=0.050  Sum_probs=113.7

Q ss_pred             CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006437          426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIR  505 (645)
Q Consensus       426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  505 (645)
                      +...|..+...+...|++++|...|++.++..+. +...+..+..+|.+.|++++|...++...... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3445666666666666666666666666666555 56666666777777777777777777666553 334556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437          506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS  584 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  584 (645)
                      .+...++++.|...+.+..+  ..| +...+..+...+...|++++|.+.++++.+.++. ++..|..++.+|.+.|+++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence            67777777777777777665  334 5666777777777777777777777777765544 5667777777777777777


Q ss_pred             HHHHHHHHHHHCCCCCChh
Q 006437          585 SAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       585 ~A~~~~~~m~~~g~~p~~~  603 (645)
                      +|++.+++..+  ..|+..
T Consensus       159 ~A~~~~~~al~--~~p~~a  175 (184)
T 3vtx_A          159 EAVKYFKKALE--KEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHH--TTHHHH
T ss_pred             HHHHHHHHHHh--CCccCH
Confidence            77777777764  345443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.42  E-value=2.4e-10  Score=109.91  Aligned_cols=188  Identities=9%  Similarity=0.033  Sum_probs=151.3

Q ss_pred             HcCCh-------HHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHh
Q 006437          404 KAGFP-------NQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH-VHTAIVDRLIE  474 (645)
Q Consensus       404 ~~g~~-------~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~  474 (645)
                      +.|++       ++|..+|++..+. +.| +...+..+...+...|++++|..+|+++++..+. +.. +|..++..+.+
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~  146 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARR  146 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHH
Confidence            45775       8999999998873 234 4557888888889999999999999999986554 333 78889999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL-EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      .|++++|..+|+++++.. +++...|........ ..|+.++|..+|++..+.  .| +...|..++..+.+.|++++|.
T Consensus       147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~  223 (308)
T 2ond_A          147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTR  223 (308)
T ss_dssp             HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999998864 345555554433322 369999999999999873  45 6788889999999999999999


Q ss_pred             HHHHHHHHCC-CCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          553 RLLQDVIDAR-IEL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       553 ~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      .+|+++.+.. +.|  ....|..++..+.+.|+.++|..+++++.+.
T Consensus       224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999863 343  5778999999999999999999999999854

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.42  E-value=5.1e-12  Score=127.40  Aligned_cols=203  Identities=11%  Similarity=0.009  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHcCCC-----------------HHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GF-TPDNYSFVGLLRGLCGARK-----------------IDEAINVYQ  451 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~  451 (645)
                      .+..+...|...|++++|...+++..+.    +- .....++..+...+...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            3445555566666666666666555432    10 1113345556666666677                 777777766


Q ss_pred             HHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          452 GIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYS  521 (645)
Q Consensus       452 ~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~  521 (645)
                      +..+.    + .......+..+...|...|++++|.+.+++..+.... ++    ...+..+...|...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            65432    1 1112346677888888889999998888887654200 11    2377888889999999999999998


Q ss_pred             HHhhCC--C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006437          522 QMKHIA--V--P-PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-----ELDYHTSIRLTKFIFKFHSSSSAVNQLV  591 (645)
Q Consensus       522 ~m~~~~--~--~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~  591 (645)
                      +..+..  .  . ....++..+...+...|++++|.+.+++..+...     ......+..+..+|.+.|++++|.+.++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            876421  0  0 1256788888899999999999999998875311     1124578888999999999999999999


Q ss_pred             HHHHC
Q 006437          592 EMCNL  596 (645)
Q Consensus       592 ~m~~~  596 (645)
                      +..+.
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.40  E-value=5.6e-12  Score=126.78  Aligned_cols=298  Identities=12%  Similarity=0.080  Sum_probs=180.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhchHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhh
Q 006437          258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN-----VVTYTSLIKGFMEAKMFSIAFSFLDMLESE----GHAP-DLVF  327 (645)
Q Consensus       258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  327 (645)
                      +......+...|++++|...|++..+.+  |+     ...+..+...+...|++++|...+++..+.    +..| ...+
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3334444444455555555554444431  11     123444444555555555555555443221    1111 1334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437          328 HNVLIDCLSKMGSYDDALDVYDGLLELKLV-PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG  406 (645)
Q Consensus       328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g  406 (645)
                      +..+...+...|++++|...+++..+.... ++.                            .....++..+...|...|
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~g  141 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----------------------------VGEARALYNLGNVYHAKG  141 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc----------------------------cchHHHHHHHHHHHHHcC
Confidence            556667777777888777777766542100 000                            001223444555555566


Q ss_pred             C--------------------hHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-C
Q 006437          407 F--------------------PNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-V  460 (645)
Q Consensus       407 ~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~  460 (645)
                      +                    +++|+..+++..+.    +..| ...++..+...+...|++++|...+++....... +
T Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (406)
T 3sf4_A          142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  221 (406)
T ss_dssp             HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence            6                    66777666655431    1111 1345667777888889999999888887754211 1


Q ss_pred             ----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 006437          461 ----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----A  527 (645)
Q Consensus       461 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~  527 (645)
                          ...++..+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+.    +
T Consensus       222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  301 (406)
T 3sf4_A          222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN  301 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence                1336777888899999999999999887653100 11    557888888999999999999999987642    1


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChhH
Q 006437          528 VPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHSSSS  585 (645)
Q Consensus       528 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~  585 (645)
                      -.+ ...++..+...|...|++++|.+.+++..+.    +.. ....++..+...+...|+...
T Consensus       302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            111 1557888888999999999999999987642    211 135667788888888887643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=1.1e-11  Score=124.51  Aligned_cols=280  Identities=12%  Similarity=0.051  Sum_probs=205.2

Q ss_pred             CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437          288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD----LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF  363 (645)
Q Consensus       288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  363 (645)
                      .....+......+...|++++|...|+++.+.+.. +    ...+..+...+...|++++|...+++..+..        
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------   77 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------   77 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------
Confidence            34455666677788899999999999988876322 2    3467778888889999999999888765421        


Q ss_pred             HHHHHHHHhcCCcccHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 006437          364 CSLLSTVCLSGRFSLLPKLVCGLEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGL  437 (645)
Q Consensus       364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~  437 (645)
                                          ...+..+ ....+..+...|...|++++|+..+++..+... .++    ..++..+...+
T Consensus        78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  137 (406)
T 3sf4_A           78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY  137 (406)
T ss_dssp             --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence                                0001011 234567777888889999999998887765310 011    34677788888


Q ss_pred             HcCCC--------------------HHHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          438 CGARK--------------------IDEAINVYQGIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK  492 (645)
Q Consensus       438 ~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  492 (645)
                      ...|+                    +++|...+++....    + ......++..+...|...|++++|...+++..+..
T Consensus       138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (406)
T 3sf4_A          138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA  217 (406)
T ss_dssp             HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred             HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            88999                    99999999887653    1 11124467888999999999999999999887541


Q ss_pred             C-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          493 Y-PLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       493 ~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      . .++    ..++..+...|...|++++|...+++..+.    +..+ ...++..+...|...|++++|.+.++++.+..
T Consensus       218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  297 (406)
T 3sf4_A          218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  297 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            0 012    347888999999999999999999997642    1111 15678889999999999999999999987532


Q ss_pred             CC----c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          563 IE----L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       563 ~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      ..    + ....+..+..+|.+.|++++|.+.+++..+.
T Consensus       298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            11    1 2667889999999999999999999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.38  E-value=1.3e-11  Score=120.46  Aligned_cols=203  Identities=11%  Similarity=0.024  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCC--------------------HHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGLCGARK--------------------IDEAIN  448 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~  448 (645)
                      .+..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            344555566666666666666665543210 011    2245556666666666                    777777


Q ss_pred             HHHHHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHH
Q 006437          449 VYQGIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYI  518 (645)
Q Consensus       449 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~  518 (645)
                      .+++....    + .......+..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77665432    1 1112346677888888999999999998887654100 11    3378888889999999999999


Q ss_pred             HHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          519 LYSQMKHI----AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-----ELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       519 ~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .+++..+.    +..+ ...++..+...+...|++++|...++++.+...     .....++..+...|.+.|++++|.+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99987642    1111 156788888999999999999999998875311     1125578889999999999999999


Q ss_pred             HHHHHHHC
Q 006437          589 QLVEMCNL  596 (645)
Q Consensus       589 ~~~~m~~~  596 (645)
                      .++++.+.
T Consensus       325 ~~~~a~~~  332 (338)
T 3ro2_A          325 FAEKHLEI  332 (338)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.38  E-value=9.1e-11  Score=103.27  Aligned_cols=167  Identities=13%  Similarity=0.125  Sum_probs=148.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      ++..|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...+.......+. +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56778889999999999999999999998864 335778888999999999999999999999888776 6777888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIK  549 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~  549 (645)
                      .+...++++.|...+++..... +.+...+..+...|.+.|++++|++.|++..+  +.| +..++..+..+|.+.|+++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHH
Confidence            9999999999999999998765 55788899999999999999999999999988  455 6889999999999999999


Q ss_pred             HHHHHHHHHHHCC
Q 006437          550 MVKRLLQDVIDAR  562 (645)
Q Consensus       550 ~a~~~~~~~~~~~  562 (645)
                      +|.+.++++++.+
T Consensus       159 ~A~~~~~~al~~~  171 (184)
T 3vtx_A          159 EAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998854

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=1.7e-11  Score=123.58  Aligned_cols=274  Identities=12%  Similarity=0.042  Sum_probs=175.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hchHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHhhHH
Q 006437          260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV-----VTYTSLIKGFMEAKMFSIAFSFLDMLESE----GH-APDLVFHN  329 (645)
Q Consensus       260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  329 (645)
                      .+...+...|++++|.+.|++..+.+  |+.     ..|..+...|...|++++|...+++..+.    +. ......+.
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            34445555556666666555555432  221     24555555556666666666665554432    11 11234566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC--
Q 006437          330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF--  407 (645)
Q Consensus       330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~--  407 (645)
                      .+...+...|++++|...+++..+....               .++            .......+..+...|...|+  
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~------------~~~~~~~~~~l~~~~~~~g~~~  183 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQ---------------LGD------------RLSEGRALYNLGNVYHAKGKHL  183 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTC------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hhc------------hHHHHHHHHHHHHHHHHcCccc
Confidence            6777777888888888887776542100               000            00112345555566666666  


Q ss_pred             ---------------hHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----CcH
Q 006437          408 ---------------PNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-----VNA  462 (645)
Q Consensus       408 ---------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~  462 (645)
                                     +++|+..+++..+.    +..+ ....+..+...+...|++++|...+++..+....     ...
T Consensus       184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (411)
T 4a1s_A          184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER  263 (411)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence                           77777777665431    1111 2346777778888999999999999888764321     112


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--P---LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA  532 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~  532 (645)
                      ..+..+..+|...|++++|...+++..+...  .   ....++..+...|...|++++|...+++..+.    +..+ ..
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  343 (411)
T 4a1s_A          264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA  343 (411)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence            3677889999999999999999998775420  0   11567888999999999999999999998652    1111 24


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .++..+...|...|++++|.+.+++..+..
T Consensus       344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          344 RACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578888999999999999999999988743

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=1.7e-10  Score=114.86  Aligned_cols=237  Identities=10%  Similarity=0.016  Sum_probs=123.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          296 LIKGFMEAKMFSIAFSFLDMLESE----GHAP-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       296 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...+...|+++.|...+++..+.-               
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------  173 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY---------------  173 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------
Confidence            445567788888888888887664    1111 23567778888888899998888888766521               


Q ss_pred             HhcCCcccHHHHHhcCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCH
Q 006437          371 CLSGRFSLLPKLVCGLEV--EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGLCGARKI  443 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~  443 (645)
                                   ...+.  .....+++.+...|...|++++|+..+++..+... .++    ..++..+...+...|++
T Consensus       174 -------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  240 (383)
T 3ulq_A          174 -------------KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY  240 (383)
T ss_dssp             -------------HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -------------HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence                         00000  01133566666777778888888877776654210 011    12344444444455555


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          444 DEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQ  522 (645)
Q Consensus       444 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  522 (645)
                      ++|...+++.....                               ...+. +....++..+...|.+.|++++|...+++
T Consensus       241 ~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          241 EDAIPYFKRAIAVF-------------------------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHHHH-------------------------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-------------------------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555554444310                               00011 11234445555555555555555555555


Q ss_pred             HhhCC---CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          523 MKHIA---VPP-NAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       523 m~~~~---~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      ..+..   -.| ....+..+...+...|+   +++|..++++.   +..+ ....+..+...|.+.|++++|.+.+++..
T Consensus       290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            43210   011 11223444555555555   44444444433   2222 23345556666666666666666666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=1.3e-09  Score=104.65  Aligned_cols=81  Identities=10%  Similarity=0.060  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHcCCCCChhchHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437          272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFME-------AKMF-------SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK  337 (645)
Q Consensus       272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  337 (645)
                      ++|..+|++..... +.+...|..+...+..       .|++       ++|..+|++..+.-.+-+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45666666665431 2344555555555442       3443       5555666555552111133345555555555


Q ss_pred             cCCHHHHHHHHHHHHH
Q 006437          338 MGSYDDALDVYDGLLE  353 (645)
Q Consensus       338 ~~~~~~a~~~~~~~~~  353 (645)
                      .|++++|..+|+++.+
T Consensus       112 ~~~~~~A~~~~~~al~  127 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            5666666666655554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=2e-10  Score=114.38  Aligned_cols=162  Identities=10%  Similarity=0.009  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA  532 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~  532 (645)
                      .++..+..+|...|++++|.+.+++..+..    .++ ...++..+...|...|++++|+..+++..+.    +..| ..
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            345566667777777777777776665431    001 1347888899999999999999999987752    3324 46


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCChh--
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDAR----IELDYHTSIRLTKFIFKFHS---SSSAVNQLVEMCNLGLIPDEM--  603 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~--  603 (645)
                      .++..+...+...|++++|.+.+++..+..    -......+..+...+...|+   .++|+.++++.   +..|+..  
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~  341 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF  341 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence            789999999999999999999999987531    11123346778888999999   77777777766   4455443  


Q ss_pred             hhHHHhhh---cccCCccccccccccc
Q 006437          604 WRKLGLLS---DETMTPVSLFDGFVPC  627 (645)
Q Consensus       604 w~~~~~L~---~~~~~~~~~~~~~~~~  627 (645)
                      +..++.+-   |+..+|...++.....
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            22222222   6666666666655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=5.7e-11  Score=121.47  Aligned_cols=195  Identities=10%  Similarity=-0.056  Sum_probs=154.8

Q ss_pred             CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFP-NQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV  469 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  469 (645)
                      +...+..+...+...|++ ++|+..|++..+.. +-+...+..+..++...|++++|.+.|++.++..+.  ...+..+.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg  177 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLS  177 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHH
Confidence            456666777777788888 88888888887753 234677888888888888888888888888877644  57778888


Q ss_pred             HHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCC--
Q 006437          470 DRLIEA---------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG--------GRTEEAYILYSQMKHIAVPP--  530 (645)
Q Consensus       470 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p--  530 (645)
                      .+|...         |++++|.+.|+++++.. +.+...|..+..+|...        |++++|+..|++..+  +.|  
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~  254 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKA  254 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCc
Confidence            888888         88888888888888764 44678888888888888        888999999988887  345  


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437          531 --NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE  592 (645)
Q Consensus       531 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  592 (645)
                        +...|..+..+|...|++++|.+.++++.+..+. +...+..+..++...|++++|++.+.+
T Consensus       255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              6788888888888999999999999988886655 677788888888888888888875544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=8.8e-11  Score=113.13  Aligned_cols=204  Identities=16%  Similarity=0.084  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------C-
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDK-------GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN------N-  457 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-  457 (645)
                      ..++..+...+...|++++|+.+++++.+.       ..+.....+..+...+...|++++|...++++...      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            344555555566666666666666555542       11222334555555556666666666666655543      1 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 006437          458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE------KY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----  526 (645)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----  526 (645)
                      .......+..+...|...|++++|.+.++++.+.      +. +.....+..+...+...|++++|+.+++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1112344555566666666666666666655543      11 112344555556666666666666666665442    


Q ss_pred             --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------------------
Q 006437          527 --AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA------------------------------------------  561 (645)
Q Consensus       527 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------------------  561 (645)
                        +..| ...++..+...|...|++++|.+.++++.+.                                          
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1122 2334555556666666666666666655531                                          


Q ss_pred             ------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          562 ------RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       562 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                            ....+..++..++.+|.+.|++++|.+.+++..+
T Consensus       267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  1122467788999999999999999999998864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.32  E-value=1e-10  Score=114.00  Aligned_cols=264  Identities=14%  Similarity=0.079  Sum_probs=158.5

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHhHHH
Q 006437           89 MISVVTRLTGRFETVRGIVGELARVGCVIK----AQTFLLFLRIYWRGEMYGMVLEAFDEMGRF----GFT-PNTFARNI  159 (645)
Q Consensus        89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~  159 (645)
                      ....+.. .|+++.|...|+++.+.. +.+    ...+..+...+...|++++|.+.+++..+.    +.. ....++..
T Consensus        11 ~g~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           11 EGERLCK-SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHH-hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3344444 566666666666665553 122    244555566666666666666666655422    111 12345555


Q ss_pred             HHHHHHhcCCHhHHHHHHhhcC-----CCC----hhhHHHHHHHHHhcCC--------------------cchHHHHHHH
Q 006437          160 VMDVLFKIGRVDLGIKVLKETQ-----LPN----FLSFNIALCNLCKLND--------------------VSNVKDVIGM  210 (645)
Q Consensus       160 ll~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~  210 (645)
                      +...|...|++++|...|++..     .++    ..++..+...+...|+                    +++|.+.+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            6666666666666666665542     112    1245555666666666                    6666666665


Q ss_pred             HHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          211 MVRK----GFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLG----T-SLSVNAWTVLIDGFRRLRRLDMAGYLWEK  280 (645)
Q Consensus       211 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~  280 (645)
                      ..+.    +..+ ...++..+...+...|++++|.+.++...+..    . .....++..+...+...|++++|.+.+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4321    1111 23356777777888888888888887776431    1 11123677777888888888888888887


Q ss_pred             HHHcC----CCC-ChhchHHHHHHHHhcCChhHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          281 MVQNG----CSP-NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEG----H-APDLVFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       281 m~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      ..+..    ..+ ...++..+...+...|++++|...+++..+..    . .....++..+...+.+.|++++|...+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            66421    000 14556677777888888888888887765431    1 11133566777888888888888888888


Q ss_pred             HHHC
Q 006437          351 LLEL  354 (645)
Q Consensus       351 ~~~~  354 (645)
                      ..+.
T Consensus       329 a~~~  332 (338)
T 3ro2_A          329 HLEI  332 (338)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.29  E-value=1.8e-10  Score=122.38  Aligned_cols=163  Identities=15%  Similarity=0.128  Sum_probs=105.6

Q ss_pred             HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437          427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG  506 (645)
Q Consensus       427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  506 (645)
                      ...++.+...+.+.|++++|.+.|++.++..+. +...+..+..+|.+.|++++|++.|+++++.. +-+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345555666666666666666666666665554 55566666666666666666666666666653 3346666667777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 006437          507 LLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSS  585 (645)
Q Consensus       507 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  585 (645)
                      |.+.|++++|++.|++..+  +.| +...|..+..+|...|++++|++.++++++.++. +...+..++.+|...|++++
T Consensus        87 l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            7777777777777777666  345 4566667777777777777777777777665544 56666677777777777777


Q ss_pred             HHHHHHHHH
Q 006437          586 AVNQLVEMC  594 (645)
Q Consensus       586 A~~~~~~m~  594 (645)
                      |.+.++++.
T Consensus       164 A~~~~~kal  172 (723)
T 4gyw_A          164 YDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=1.8e-10  Score=117.74  Aligned_cols=213  Identities=10%  Similarity=-0.001  Sum_probs=170.9

Q ss_pred             hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHh
Q 006437          306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY-DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVC  384 (645)
Q Consensus       306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  384 (645)
                      ++++...+++..... ..+...+..+...+...|++ ++|++.|++..+..                             
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----------------------------  133 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----------------------------  133 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------------------
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------------------
Confidence            455666666555432 23566777777788888888 88888888877642                             


Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---------CCHHHHHHHHHHHHH
Q 006437          385 GLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA---------RKIDEAINVYQGIVM  455 (645)
Q Consensus       385 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~  455 (645)
                          +.+...|..+...|...|++++|+..|++..+.  .|+...+..+...+...         |++++|...+++.++
T Consensus       134 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  207 (474)
T 4abn_A          134 ----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ  207 (474)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence                224566777888888889999999999988875  46677888888888888         999999999999998


Q ss_pred             cCCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          456 NNPAVNAHVHTAIVDRLIEA--------GRCHKAIQLFRRAIVEKYP---LDVVSYTVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       456 ~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      ..+. +...+..+..+|...        |++++|.+.|+++.+.. +   .+...|..+..+|...|++++|++.|++..
T Consensus       208 ~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          208 MDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8776 778888999999988        99999999999999864 3   478899999999999999999999999998


Q ss_pred             hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          525 HIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       525 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      +  +.| +...+..+..++...|++++|.+.+.++
T Consensus       286 ~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 A--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             H--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8  456 5778888899999999988888765443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.27  E-value=4e-10  Score=99.05  Aligned_cols=162  Identities=10%  Similarity=0.060  Sum_probs=104.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437          430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE  509 (645)
Q Consensus       430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (645)
                      +..+...+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            334444555555666666655555544333 45555666666666666666666666666543 3356666667777777


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437          510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  589 (645)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..++..+...|++++|.+.
T Consensus        89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777777766532 335666777777777777777777777777765433 566777777777777777777777


Q ss_pred             HHHHHH
Q 006437          590 LVEMCN  595 (645)
Q Consensus       590 ~~~m~~  595 (645)
                      ++++.+
T Consensus       167 ~~~~~~  172 (186)
T 3as5_A          167 FKKANE  172 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.25  E-value=1.3e-09  Score=99.55  Aligned_cols=200  Identities=14%  Similarity=0.050  Sum_probs=154.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV  469 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  469 (645)
                      .|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++.++..+. +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            3556777788889999999999999999988754367777777888999999999999999999988776 778888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 006437          470 DRLIEAGRCHKAIQLFRRAIVEKYPLDV-------VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYRVML  539 (645)
Q Consensus       470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll  539 (645)
                      .+|...|++++|...+++..+.. +.+.       ..|..+...+...|++++|++.|++..+  ..|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence            99999999999999999998864 3345       4588888889999999999999999988  5565   45677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          540 LSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ..|...|     ..+++++...+.. +...|....  ....+.+++|++.+++..+  +.|+..
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~  214 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT  214 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence            7775544     3445555554332 344444433  3345678899999999885  456655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=2.2e-09  Score=106.54  Aligned_cols=233  Identities=10%  Similarity=-0.013  Sum_probs=166.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437          331 LIDCLSKMGSYDDALDVYDGLLELKL-VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN  409 (645)
Q Consensus       331 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  409 (645)
                      ....+...|++++|...|++..+... .++..                            ....++..+...|...|+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~a~~~~~lg~~y~~~~~~~  158 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDI----------------------------EKAEFHFKVAEAYYHMKQTH  158 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH----------------------------HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH----------------------------HHHHHHHHHHHHHHHcCCcH
Confidence            34556778899999999988775311 01110                            02345667777888888888


Q ss_pred             HHHHHHHHHHHC----CC-CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----C-CCcHHHHHHHHHHHHhcCCH
Q 006437          410 QAVKLYNTMLDK----GF-TP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNN----P-AVNAHVHTAIVDRLIEAGRC  478 (645)
Q Consensus       410 ~a~~~~~~m~~~----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~  478 (645)
                      .|+..+++..+.    +- .+ ...++..+...|...|++++|.+.+++..+..    . .....++..+..+|...|++
T Consensus       159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~  238 (378)
T 3q15_A          159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD  238 (378)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence            888888876652    10 11 24467778888899999999999998877641    1 11244677889999999999


Q ss_pred             HHHHHHHHHHHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC-HHHHHHHHHHHHhcCC--
Q 006437          479 HKAIQLFRRAIV-----EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV---PPN-AYTYRVMLLSFCKERN--  547 (645)
Q Consensus       479 ~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~--  547 (645)
                      ++|.+.+++..+     .. +....++..+...|.+.|++++|...+++..+..-   .|. ...+..+...+...|+  
T Consensus       239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~  317 (378)
T 3q15_A          239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER  317 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence            999999999886     43 33467788899999999999999999999875321   222 3455666666777788  


Q ss_pred             -HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          548 -IKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       548 -~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                       +++|..++++   .+..+ ....+..+...|.+.|++++|.+.+++..+
T Consensus       318 ~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          318 KIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             6677766665   33222 345677899999999999999999998863

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=1.2e-10  Score=112.18  Aligned_cols=172  Identities=19%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-C
Q 006437          221 RMFEILLNCFCKMGRIAEAYQLLGLMITL-------GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQN------G-C  286 (645)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~-~  286 (645)
                      .++..+...+...|++++|..+++.+.+.       ..+.....+..+...|...|++++|.+.+++....      + .
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34555555555566666666665555542       12223445555666666666666666666665532      1 1


Q ss_pred             CCChhchHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C
Q 006437          287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE------GH-APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELK---L  356 (645)
Q Consensus       287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~  356 (645)
                      +....++..+...|...|++++|...++++.+.      +. ......+..+...+...|++++|.+.++++.+..   .
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            123445566666666667777777666666543      11 1234556777888888999999999888876530   0


Q ss_pred             CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006437          357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD  420 (645)
Q Consensus       357 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  420 (645)
                      .++                            .......+..+...|...|++++|...++++.+
T Consensus       188 ~~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          188 GPD----------------------------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             CTT----------------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCC----------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            000                            011234567778888889999999999988775

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=1.4e-09  Score=95.40  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3456677778888999999999998887653 345677888888889999999999999999887655 67788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  551 (645)
                      +...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999988764 5578888999999999999999999999988743 34678899999999999999999


Q ss_pred             HHHHHHHHHCC
Q 006437          552 KRLLQDVIDAR  562 (645)
Q Consensus       552 ~~~~~~~~~~~  562 (645)
                      .+.++++.+..
T Consensus       164 ~~~~~~~~~~~  174 (186)
T 3as5_A          164 LPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            99999987643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.22  E-value=1.3e-08  Score=100.85  Aligned_cols=272  Identities=10%  Similarity=-0.007  Sum_probs=127.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----chHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----hhHHHH
Q 006437          261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV----TYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APDL----VFHNVL  331 (645)
Q Consensus       261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l  331 (645)
                      ....+...|++++|...+++.....-..+..    .+..+...+...|++++|...+++..+... ..+.    .++..+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3344555666666666666655432111111    233344445555666666655555443200 0011    123344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCC--C-CHHHHHHHHHHHHHcCCh
Q 006437          332 IDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVE--A-DLVVYNALLSYFCKAGFP  408 (645)
Q Consensus       332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~  408 (645)
                      ...+...|++++|...+++..+.                            ....+..  | ....+..+...+...|++
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~  151 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQL----------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL  151 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----------------------------HHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence            44555555555555555544431                            0111111  2 123444555566666666


Q ss_pred             HHHHHHHHHHHHCCCC--C--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHH----HHHHHHHhcCCH
Q 006437          409 NQAVKLYNTMLDKGFT--P--DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVHT----AIVDRLIEAGRC  478 (645)
Q Consensus       409 ~~a~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~  478 (645)
                      ++|...+++..+....  +  ...++..+...+...|++++|...+++.......+  ......    ..+..+...|++
T Consensus       152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  231 (373)
T 1hz4_A          152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  231 (373)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence            6666666665542211  1  12234445555556666666666666655431111  111111    122335566666


Q ss_pred             HHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCH-HHHHHHHHHHHhcCCHHH
Q 006437          479 HKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPNA-YTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       479 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~  550 (645)
                      ++|...+++.......+.   ...+..+...+...|++++|...+++..+.    |..++. .++..+..++...|+.++
T Consensus       232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  311 (373)
T 1hz4_A          232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD  311 (373)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence            666666666554321110   113445555566666666666666655321    111111 244445555566666666


Q ss_pred             HHHHHHHHHH
Q 006437          551 VKRLLQDVID  560 (645)
Q Consensus       551 a~~~~~~~~~  560 (645)
                      |...+++..+
T Consensus       312 A~~~l~~al~  321 (373)
T 1hz4_A          312 AQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.21  E-value=2.2e-09  Score=106.53  Aligned_cols=312  Identities=11%  Similarity=0.013  Sum_probs=200.5

Q ss_pred             CCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcC--C--CcCHHhHHHHHHHH--HhcCCHHHH---------HHHHHH
Q 006437          218 PNVRMFEILLNCF--CKMGRIAEAYQLLGLMITLG--T--SLSVNAWTVLIDGF--RRLRRLDMA---------GYLWEK  280 (645)
Q Consensus       218 p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~--~~~~~~~~a---------~~~~~~  280 (645)
                      |+...-..+-..|  ...+++++|.++++++.+..  .  ..+...|-.++..-  ...+.++.+         .+.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4444444444444  56777777777777765421  1  22233333333321  111222222         255555


Q ss_pred             HHHcCCCCC--h--hchHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          281 MVQNGCSPN--V--VTYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APD----LVFHNVLIDCLSKMGSYDDALDVYDGL  351 (645)
Q Consensus       281 m~~~~~~~~--~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~  351 (645)
                      +.....+.+  .  ..+......+...|++++|...|++..+... .++    ..++..+...+...|+++.|...+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            543211111  0  1122233456788999999999999876421 122    356777888999999999999999887


Q ss_pred             HHCCCC-CCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 006437          352 LELKLV-PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-  425 (645)
Q Consensus       352 ~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-  425 (645)
                      .+.... ++.                           ......+++.+...|...|++++|++.+++..+.    +..+ 
T Consensus       168 l~~~~~~~~~---------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          168 LDIYQNHPLY---------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHTSTTC---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhCCCc---------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            652100 000                           0012345677778888889999998888877652    1111 


Q ss_pred             CHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC
Q 006437          426 DNYSFVGLLRGLCGARKIDEAINVYQGIVM-----NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY----PLD  496 (645)
Q Consensus       426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~  496 (645)
                      ...++..+..++...|++++|...+++...     ..+. ...++..+...|.+.|++++|...+++..+..-    +..
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  299 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY  299 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            134677788888899999999999999887     4444 377788899999999999999999999886521    112


Q ss_pred             hhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ...+..+...+...++   .++|+..+++..   ..| ....+..+...|...|++++|.+.++++.+
T Consensus       300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3456666667777788   777887777632   233 345677888999999999999999998864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.18  E-value=2.1e-09  Score=98.15  Aligned_cols=155  Identities=12%  Similarity=0.026  Sum_probs=129.0

Q ss_pred             CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437          425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI  504 (645)
Q Consensus       425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  504 (645)
                      .|+..+......+...|++++|...|+..++..+.++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35567778888899999999999999999998875577777779999999999999999999999875 44678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHH
Q 006437          505 RGLLEGGRTEEAYILYSQMKHIAVPP-NA-------YTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTK  575 (645)
Q Consensus       505 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  575 (645)
                      ..|...|++++|+..+++..+  ..| +.       ..|..+...+...|++++|.+.++++++.++.. +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            999999999999999999988  455 45       457888888899999999999999998754320 2567778888


Q ss_pred             HHHhcCC
Q 006437          576 FIFKFHS  582 (645)
Q Consensus       576 ~~~~~g~  582 (645)
                      +|...|+
T Consensus       162 ~~~~~~~  168 (228)
T 4i17_A          162 LFYNNGA  168 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=1.2e-09  Score=116.12  Aligned_cols=165  Identities=18%  Similarity=0.145  Sum_probs=148.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      +...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|.+.|++.++..+. +...+..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46788999999999999999999999998853 234678899999999999999999999999998877 7888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIK  549 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~  549 (645)
                      +|.+.|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+  +.| +...+..+..++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999999875 44688999999999999999999999999998  567 5789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 006437          550 MVKRLLQDVID  560 (645)
Q Consensus       550 ~a~~~~~~~~~  560 (645)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=1.4e-08  Score=94.31  Aligned_cols=184  Identities=9%  Similarity=0.053  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          411 AVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI  489 (645)
Q Consensus       411 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  489 (645)
                      |+..|++..+.+ .++..++..+..++...|++++|.+++.+.+..++ .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677788777654 45566666777888888999999999998877765 2367777888999999999999999999987


Q ss_pred             HCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          490 VEKYPL-----DVVSYTVAIRG--LLEGG--RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       490 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +.  .|     +-.+...|+.+  ....|  +.++|..+|+++.+  -.|+..+...++.++...|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            75  35     24555566655  33334  89999999999876  356644444555588899999999999987665


Q ss_pred             CCC---------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          561 ARI---------ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       561 ~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ..+         .-++.++..++......|+  +|.++++++++  ..|+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA  287 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence            310         1267777677777777786  78899999985  567666

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.15  E-value=2e-08  Score=99.47  Aligned_cols=271  Identities=12%  Similarity=-0.037  Sum_probs=165.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhchHHHH
Q 006437          227 LNCFCKMGRIAEAYQLLGLMITLGTSLSV----NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC-SPN----VVTYTSLI  297 (645)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li  297 (645)
                      ...+...|++++|...++.........+.    ..++.+...+...|++++|.+.+++.....- ..+    ..++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            33445566666666666666554322222    1344555666667777777777766553210 011    12244556


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          298 KGFMEAKMFSIAFSFLDMLESE----GHA--P-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       298 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      ..+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++..+.......          
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------  170 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP----------  170 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG----------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc----------
Confidence            6677777888777777766542    221  2 2334555677788888888888888877653211100          


Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHH----HHHHHHHcCCCHH
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD--NYSFV----GLLRGLCGARKID  444 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~  444 (645)
                                        ......+..+...+...|++++|...+++.......++  .....    ..+..+...|+++
T Consensus       171 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  232 (373)
T 1hz4_A          171 ------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA  232 (373)
T ss_dssp             ------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence                              01123455666777788888888888887765311111  11111    2233466888999


Q ss_pred             HHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHH
Q 006437          445 EAINVYQGIVMNNPAV---NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPLDV-VSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A  516 (645)
                      +|...++.........   ....+..+...+...|++++|...+++....    +.+++. ..+..+..++...|+.++|
T Consensus       233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  312 (373)
T 1hz4_A          233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  312 (373)
T ss_dssp             HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence            9988888876544321   1234567788888899999999988877543    211222 3566677788899999999


Q ss_pred             HHHHHHHhh
Q 006437          517 YILYSQMKH  525 (645)
Q Consensus       517 ~~~~~~m~~  525 (645)
                      ...+++...
T Consensus       313 ~~~l~~al~  321 (373)
T 1hz4_A          313 QRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=5.9e-10  Score=105.56  Aligned_cols=224  Identities=12%  Similarity=-0.064  Sum_probs=138.5

Q ss_pred             hcCCcccHHHHHhc-------C-C-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhhHHHHH
Q 006437          372 LSGRFSLLPKLVCG-------L-E-V-EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK------GFTP-DNYSFVGLL  434 (645)
Q Consensus       372 ~~~~~~~a~~~~~~-------~-~-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll  434 (645)
                      ..|+++.|...+++       . + . .....++..+...|...|++++|+..+++..+.      +-.| ...++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45667766666521       1 1 1 123556777778888888888888888877653      2122 245677777


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHcC-----C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhH
Q 006437          435 RGLCGARKIDEAINVYQGIVMNN-----P--AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE------KYPL-DVVSY  500 (645)
Q Consensus       435 ~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~  500 (645)
                      ..+...|++++|...+++.....     .  ......+..+...|...|++++|...++++.+.      +..| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            77888888888888888776541     1  123556677778888888888888888887765      1112 35567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--H-CC--CCcCH
Q 006437          501 TVAIRGLLEGGRTEEAYILYSQMKHI-------AVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVI--D-AR--IELDY  567 (645)
Q Consensus       501 ~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~-~~--~~~~~  567 (645)
                      ..+...|...|++++|...++++.+.       ...+. ...+..+...+...+....+..+.....  + .+  .....
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN  252 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence            77778888888888888888877642       11222 2233333333333332222222111111  1 11  11245


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          568 HTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ..+..+..+|.+.|++++|.+++++..+
T Consensus       253 ~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          253 TTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788899999999999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.04  E-value=1.3e-08  Score=83.67  Aligned_cols=129  Identities=12%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC  543 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  543 (645)
                      .+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            35566677777777888887777776654 3456677777777777788888888888777643 335667777777788


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          544 KERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       544 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ..|++++|.++++++.+..+. +...+..++..+.+.|++++|.+.++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            888888888888877765443 566777778888888888888888887764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.00  E-value=6.9e-08  Score=91.70  Aligned_cols=132  Identities=13%  Similarity=0.014  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCC-c----H
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGA-RKIDEAINVYQGIVMNNPAV-N----A  462 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~  462 (645)
                      +|+.+...|.+.|++++|+..+++..+.    |-.. ...++..+...|... |++++|...+++.++..+.. +    .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            4555556666666666666666655432    1000 023445555555554 66666666666655432211 0    2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV------VSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      .++..+...+.+.|++++|...|+++.+.......      ..|..+..++...|++++|+..+++..+
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34555566666666666666666666554311111      0344555556666666666666666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.00  E-value=1.3e-08  Score=96.14  Aligned_cols=232  Identities=8%  Similarity=-0.025  Sum_probs=128.2

Q ss_pred             cCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHhHHHHHH
Q 006437           97 TGRFETVRGIVGELARV-------GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF------GF-TPNTFARNIVMD  162 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~  162 (645)
                      .|+++.|...+++..+.       ..+....++..+...|...|++++|...++++.+.      +- +....++..+..
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            45666666666655441       21224556777778888888888888888877643      11 223455666666


Q ss_pred             HHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437          163 VLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQL  242 (645)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  242 (645)
                      +|...|++++|.+.|++.                        ++++++......+....++..+...+...|++++|...
T Consensus        94 ~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  149 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY  149 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            676677777766666542                        11111111111112244566667777777777777777


Q ss_pred             HHHHHHc------C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChh-chHHHHHHHHhcCChh
Q 006437          243 LGLMITL------G-TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQN-------GCSPNVV-TYTSLIKGFMEAKMFS  307 (645)
Q Consensus       243 ~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~-~~~~li~~~~~~~~~~  307 (645)
                      ++...+.      + .+....++..+...|...|++++|.+.+++..+.       ...+... .|..+...+...+...
T Consensus       150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (283)
T 3edt_B          150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR  229 (283)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence            7766653      1 1223456777777777778888887777776642       1122222 2222222222222222


Q ss_pred             HHH------HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          308 IAF------SFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE  353 (645)
Q Consensus       308 ~a~------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  353 (645)
                      .+.      ..++.... .......++..+...+...|++++|...+++..+
T Consensus       230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          230 DSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             C------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222      12111111 0111234677788888888999999988887765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=1.2e-08  Score=96.98  Aligned_cols=207  Identities=12%  Similarity=0.006  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---C--cHHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDK----GFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA---V--NAHV  464 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~  464 (645)
                      |......|...|++++|...|.+..+.    |-.++ ..+|..+..+|...|++++|...+++.+.....   +  ...+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344466788899999999999887653    32222 467888999999999999999999988765321   1  1457


Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------
Q 006437          465 HTAIVDRLIEA-GRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA------  532 (645)
Q Consensus       465 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------  532 (645)
                      +..+..+|... |++++|...|++.++.... .+    ..+++.+...+.+.|++++|+..|++..+.......      
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            78899999996 9999999999998764200 01    356888999999999999999999999874321111      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C---HHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCChh
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D---YHTSIRLTKFIF--KFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ..+..+..++...|++++|...+++..+..+.. +   ...+..++.++.  ..+++++|++.++++.  .+.|...
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~~  274 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWKI  274 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHHH
Confidence            256778888999999999999999987643321 1   123445566664  4567888888887775  3555444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=1.8e-08  Score=90.27  Aligned_cols=179  Identities=13%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437          397 ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA  475 (645)
Q Consensus       397 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  475 (645)
                      .....+...|++++|+..|++..+.  .|+.. .+.. .    ...              ............+..+|.+.
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAYKKN   67 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHHHHC
Confidence            3444566777777777777777664  23322 2211 0    000              00001122223367777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC--HHHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN--IKMVK  552 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~--~~~a~  552 (645)
                      |++++|...|++.++.. |.+...|..+...+...|++++|+..|++..+  +.| +..++..+...|...|+  .+.+.
T Consensus        68 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77888887777777664 44567777777777777888888888877777  445 56677777777655543  33344


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          553 RLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ..++.+..  +.|....+..+..++...|++++|++.|++..  ...|+..
T Consensus       145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~  191 (208)
T 3urz_A          145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTE  191 (208)
T ss_dssp             HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHH
T ss_pred             HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHH
Confidence            44444321  22222233445556666777888888888777  3556544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.98  E-value=4.3e-08  Score=91.50  Aligned_cols=166  Identities=13%  Similarity=0.061  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD---NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVH  465 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~  465 (645)
                      +...+-.+...+.+.|++++|+..|+++.+.. +.+   ...+..+..++...|++++|...|+.+++..+..  ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44555666677778888888888888887753 112   4566677777888888888888888888775531  24456


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 006437          466 TAIVDRLIE--------AGRCHKAIQLFRRAIVEKYPLDVVSY-----------------TVAIRGLLEGGRTEEAYILY  520 (645)
Q Consensus       466 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~  520 (645)
                      ..+..++..        .|++++|...|+++++.. |.+....                 ..+...|.+.|++++|+..|
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            667777777        788888888888887653 2233333                 23344455555555555555


Q ss_pred             HHHhhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 006437          521 SQMKHIAVPPN----AYTYRVMLLSFCKE----------RNIKMVKRLLQDVID  560 (645)
Q Consensus       521 ~~m~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~  560 (645)
                      +++.+.  .|+    ...+..+..+|...          |++++|...++++.+
T Consensus       172 ~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          172 EAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            555442  222    23444444444433          445555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.97  E-value=2.6e-09  Score=90.05  Aligned_cols=139  Identities=10%  Similarity=-0.056  Sum_probs=74.4

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437          439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI  518 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  518 (645)
                      ..|++++|...+.......+. +...+..+...|.+.|++++|.+.|++.++.. |-+..+|..+..+|.+.|++++|+.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence            344555555555554433222 23334445556666666666666666665543 3345566666666666666666666


Q ss_pred             HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437          519 LYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR-LLQDVIDARIELDYHTSIRLTKFIFKFHS  582 (645)
Q Consensus       519 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  582 (645)
                      .|++..+  +.| +..++..+...|.+.|++++|.+ +++++.+..+. ++..|......+.+.|+
T Consensus        87 ~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           87 CYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            6666655  334 35556666666666666554443 33555554433 45555555555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.97  E-value=3.9e-08  Score=80.83  Aligned_cols=128  Identities=17%  Similarity=0.243  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437          431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG  510 (645)
Q Consensus       431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  510 (645)
                      ..+...+...|++++|..+++.+.+..+. +...+..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            33444455555555555555555544433 34455555566666666666666666665543 33455566666666666


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          511 GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       511 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      |++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus        83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            66677766666666532 224556666666666777777777776666553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.95  E-value=9e-07  Score=90.19  Aligned_cols=383  Identities=13%  Similarity=0.058  Sum_probs=200.6

Q ss_pred             cC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HhHHH
Q 006437           97 TG-RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR-VDLGI  174 (645)
Q Consensus        97 ~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~  174 (645)
                      .| +...|..+|+.+...-  |.              ++++.+..+|+.....  .|++..|...+....+.++ .+...
T Consensus         7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~   68 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY   68 (493)
T ss_dssp             -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred             cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence            35 3777788887776652  33              8999999999999875  5799999998888877764 34556


Q ss_pred             HHHhhcC------CCChhhHHHHHHHHH----hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHH
Q 006437          175 KVLKETQ------LPNFLSFNIALCNLC----KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK---MGRIAEAYQ  241 (645)
Q Consensus       175 ~~~~~~~------~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~  241 (645)
                      .+|+...      ..+...|...+.-+.    ..++.+.+.++|+..+..   |.. .+..+-..|..   ..+...+.+
T Consensus        69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~  144 (493)
T 2uy1_A           69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKK  144 (493)
T ss_dssp             HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHH
Confidence            6666533      234556666665543    235667788888887763   211 11222222211   111222222


Q ss_pred             HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcC--C-----hhHHHHHHH
Q 006437          242 LLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAK--M-----FSIAFSFLD  314 (645)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~  314 (645)
                      +.....                     +.+..|..+++.+...--..+...|...+.--...+  -     .+.+..+|+
T Consensus       145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye  203 (493)
T 2uy1_A          145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN  203 (493)
T ss_dssp             HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence            222211                     123334444444332100012234544444322211  0     344667788


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHH
Q 006437          315 MLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVV  394 (645)
Q Consensus       315 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  394 (645)
                      ++.... +.+...|...+..+.+.|+.+.|..++++....   |.......   .|....+.+..               
T Consensus       204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---------------  261 (493)
T 2uy1_A          204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---------------  261 (493)
T ss_dssp             HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---------------
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---------------
Confidence            777642 335666777777778888899999999888876   43322111   12221111111               


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      +..+...+.. ...+.+     .. .. .......|...+....+.++.+.|..+|+.. .. +..+..+|...+..-..
T Consensus       262 ~~~l~~~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~  331 (493)
T 2uy1_A          262 YGDLKRKYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY  331 (493)
T ss_dssp             HHHHHHHTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence            1111111100 000000     00 00 0001233444455555566677777777777 22 22334444433333333


Q ss_pred             cC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006437          475 AG-RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       475 ~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      .+ +.+.|..+|+...+.- +-++..|...+....+.|+.+.|..+|+++.     .....|...+.--...|+.+.+.+
T Consensus       332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~  405 (493)
T 2uy1_A          332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE  405 (493)
T ss_dssp             HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence            33 5788888888777652 3334556666666677788888888888862     245666666666667788888888


Q ss_pred             HHHHHHH
Q 006437          554 LLQDVID  560 (645)
Q Consensus       554 ~~~~~~~  560 (645)
                      +++++.+
T Consensus       406 v~~~~~~  412 (493)
T 2uy1_A          406 LVDQKMD  412 (493)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.95  E-value=4.5e-08  Score=91.40  Aligned_cols=175  Identities=11%  Similarity=0.051  Sum_probs=140.1

Q ss_pred             CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhH
Q 006437          425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--PLDVVSY  500 (645)
Q Consensus       425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~  500 (645)
                      .+...+..+...+.+.|++++|...|+.++...+...  ...+..+..+|.+.|++++|...|+++++...  +.....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3456677777888999999999999999999876521  66788899999999999999999999998641  1124567


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 006437          501 TVAIRGLLE--------GGRTEEAYILYSQMKHIAVPPN-AYTY-----------------RVMLLSFCKERNIKMVKRL  554 (645)
Q Consensus       501 ~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~  554 (645)
                      ..+..++..        .|++++|+..|+++.+  ..|+ ....                 ..+...|...|++++|...
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            788888888        9999999999999987  3453 2333                 5668889999999999999


Q ss_pred             HHHHHHCCCCc--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCChh
Q 006437          555 LQDVIDARIEL--DYHTSIRLTKFIFKF----------HSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       555 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ++++++..+..  ....+..++.+|...          |++++|.+.++++.+.  .|+..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~  229 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP  229 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence            99999865432  356788888888876          8899999999999864  45543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.94  E-value=7.1e-07  Score=90.96  Aligned_cols=187  Identities=10%  Similarity=0.025  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC------------C
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN------------P  458 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~  458 (645)
                      +...|-..+..+.+.|++++|..++++....   |....+..   .|+.....++.   ++.+...-            .
T Consensus       212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~  282 (493)
T 2uy1_A          212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS  282 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence            4566777777777888899999999988876   44333222   12211111111   22222110            0


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCC-CHHHHH
Q 006437          459 AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE-GGRTEEAYILYSQMKHIAVPP-NAYTYR  536 (645)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p-~~~~~~  536 (645)
                      .....+|...+....+.++.+.|..+|+++ ... +.+...|-..+..-.. .++.+.|..+|+...+.  .| ++..+.
T Consensus       283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~  358 (493)
T 2uy1_A          283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHH
Confidence            112345667777777888999999999999 321 1233444332222222 33699999999998874  24 455566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      ..++-....|+.+.|..+|+.+.     -....|...+..-...|+.+.+.++++++.+
T Consensus       359 ~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          359 EFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777788999999999999872     2578899999888899999999998888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=9.5e-08  Score=85.78  Aligned_cols=177  Identities=12%  Similarity=0.047  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006437          410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG----RCHKAIQLF  485 (645)
Q Consensus       410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~  485 (645)
                      +|++.|++..+.|   +...+..+...+...+++++|...|++..+.+   +...+..+...|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4566777776664   56666677777777788888888888877765   55666677777776 5    788888888


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 006437          486 RRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCK----ERNIKMVKRL  554 (645)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~  554 (645)
                      ++..+.+   +...+..|...|..    .+++++|+.+|++..+.|  |+   ...+..|...|..    .+++++|..+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            8887765   67777777777776    778888888888887754  32   6777778888877    7788888888


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCCCC
Q 006437          555 LQDVIDARIELDYHTSIRLTKFIFKF-H-----SSSSAVNQLVEMCNLGLIP  600 (645)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~p  600 (645)
                      +++..+.+  .++..+..|...|... |     +.++|.+++++..+.|...
T Consensus       152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            88887762  2445667777777653 3     7888888888888776433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.91  E-value=4.9e-07  Score=84.07  Aligned_cols=145  Identities=9%  Similarity=0.079  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          204 VKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGT-SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV  282 (645)
Q Consensus       204 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  282 (645)
                      |+..|++..+.+ .++..++..+..++...|++++|++++...+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            667777776654 45666667888889999999999999998876654 2366788888999999999999999999998


Q ss_pred             HcCCCC-----ChhchHHHHHHH--HhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          283 QNGCSP-----NVVTYTSLIKGF--MEAK--MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE  353 (645)
Q Consensus       283 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  353 (645)
                      +.  .|     +..+...+..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            75  45     355556666563  3334  899999999998775  34533444555589999999999999987654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.90  E-value=2e-08  Score=87.31  Aligned_cols=160  Identities=13%  Similarity=0.092  Sum_probs=117.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 006437          430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LL  508 (645)
Q Consensus       430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~  508 (645)
                      +......+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++....  |+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            445556677788888888888887776655 66777888888888888888888888876653  344333322212 12


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSA  586 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  586 (645)
                      ..+...+|+..+++..+  ..| +...+..+...+...|++++|...++++.+..+.+ +...+..++.++...|+.++|
T Consensus        86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            22233457888888877  456 57888888899999999999999999998876653 466788888999999999999


Q ss_pred             HHHHHHHH
Q 006437          587 VNQLVEMC  594 (645)
Q Consensus       587 ~~~~~~m~  594 (645)
                      ...+++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.90  E-value=9.1e-08  Score=85.64  Aligned_cols=187  Identities=13%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHhcCCcccHHHHHhc-CCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437          362 TFCSLLSTVCLSGRFSLLPKLVCG-LEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG  439 (645)
Q Consensus       362 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  439 (645)
                      .+......+...|++++|...|+. ....|+. ..|..     ....              ............+..++..
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----~~~~--------------~~~~~~~~~~~~lg~~~~~   66 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW-----TNVD--------------KNSEISSKLATELALAYKK   66 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH-----HHSC--------------TTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-----hhhc--------------chhhhhHHHHHHHHHHHHH
Confidence            334445567789999999999844 2233332 11211     0000              0011112233446777888


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHH
Q 006437          440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR--TEEAY  517 (645)
Q Consensus       440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~  517 (645)
                      .|++++|...+++.++..+. +...+..+..++...|++++|...|+++++.. |.+..+|..+...|...|+  .+.+.
T Consensus        67 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           67 NRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88999999988888888776 77788888888999999999999999888875 4467788888888766553  34455


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      ..++....  ..|....+.....++...|++++|...|+++++..  |+......+
T Consensus       145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l  196 (208)
T 3urz_A          145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTL  196 (208)
T ss_dssp             HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHH
T ss_pred             HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence            55555532  22333344555666677888999999999888744  454444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=4.6e-08  Score=92.57  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=135.5

Q ss_pred             CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-H
Q 006437          425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV-A  503 (645)
Q Consensus       425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l  503 (645)
                      .+...+..+...+...|++++|...+++.....+. +...+..+...+.+.|++++|...++++....  |+...... .
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~  191 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA  191 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence            34556667777888999999999999999998877 77888899999999999999999999887664  45443322 2


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcC
Q 006437          504 IRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFH  581 (645)
Q Consensus       504 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  581 (645)
                      ...+.+.++.++|+..+++..+.  .| +...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            33466778888899999998874  45 68889999999999999999999999999866542 3778999999999999


Q ss_pred             ChhHHHHHHHHHH
Q 006437          582 SSSSAVNQLVEMC  594 (645)
Q Consensus       582 ~~~~A~~~~~~m~  594 (645)
                      +.++|...+++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            9999999888865

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.89  E-value=1.3e-08  Score=109.00  Aligned_cols=173  Identities=11%  Similarity=-0.018  Sum_probs=145.4

Q ss_pred             HHcCChHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          403 CKAGFPNQAVKLYNTML--------DKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      ...|++++|++.+++..        +. .+.+...+..+..++...|++++|...++++++..+. +...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67899999999999988        33 2334567888888999999999999999999998776 78889999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      .|++++|.+.|+++++.. +.+...|..+..+|.+.|++++ ++.|++..+  +.| +...+..+..++...|++++|.+
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999875 4468889999999999999999 999999988  456 67889999999999999999999


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437          554 LLQDVIDARIELDYHTSIRLTKFIFKFHS  582 (645)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  582 (645)
                      .++++.+.++. +...+..+..++...|+
T Consensus       556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            99998875543 46777788888766555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.88  E-value=5.3e-08  Score=102.35  Aligned_cols=155  Identities=12%  Similarity=0.091  Sum_probs=108.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      .|++++|+..+++..+.. +-+...+..+...+...|++++|.+.+++..+..+. +...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            467888888888877652 234667777888888888888888888888877665 677788888888888888888888


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE---RNIKMVKRLLQDVID  560 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~  560 (645)
                      +++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.  .| +...+..+...+...   |++++|.+.++++.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            88888764 445778888888888888888888888888773  44 567788888888888   888888888888887


Q ss_pred             CCCC
Q 006437          561 ARIE  564 (645)
Q Consensus       561 ~~~~  564 (645)
                      .+..
T Consensus       157 ~~p~  160 (568)
T 2vsy_A          157 QGVG  160 (568)
T ss_dssp             HTCC
T ss_pred             cCCc
Confidence            6554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.87  E-value=1.6e-07  Score=85.32  Aligned_cols=186  Identities=9%  Similarity=-0.025  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFT-PD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTA  467 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  467 (645)
                      ...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++..+....  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555667788888888888888888875311 11 245667777888888888888888888887665322  23444


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 006437          468 IVDRLIE------------------AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVP  529 (645)
Q Consensus       468 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  529 (645)
                      +..++.+                  .|++++|...|+++++.. |-+...+.......          .+...+.     
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~-----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA-----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH-----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH-----
Confidence            4444443                  344555555555555432 11222221111000          0000000     


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          530 PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       530 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                         .....+...+.+.|++++|...++++++..+..+  ...+..+..+|.+.|+.++|.+.++.+...
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence               0113456678899999999999999988654421  357888999999999999999999998864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.84  E-value=4.1e-07  Score=82.55  Aligned_cols=183  Identities=10%  Similarity=-0.021  Sum_probs=125.8

Q ss_pred             CHhhHHHHHHHHHhcCCcccHHHHHhcCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----h
Q 006437          359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLE-VEAD----LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY----S  429 (645)
Q Consensus       359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~  429 (645)
                      +...+..+...+...|++++|...|+..- ..|+    ...+..+..+|.+.|++++|+..|+++.+..  |+..    .
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            34455667778899999999999995431 1222    4577888899999999999999999998853  3322    3


Q ss_pred             HHHHHHHHHc------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          430 FVGLLRGLCG------------------ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       430 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  491 (645)
                      +..+..++..                  .|+.++|...|+.+++..+. +.....+....          ..+...+   
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---  146 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---  146 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH---
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH---
Confidence            4444444443                  57899999999999988765 33222221110          0011111   


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          492 KYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA----YTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       492 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                           ......+...|.+.|++++|+..|+++.+  ..|+.    ..+..+..++.+.|+.++|.+.++.+...++.
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence                 01123456778888999999999999887  34542    46788888999999999999999988876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.81  E-value=5.4e-08  Score=104.09  Aligned_cols=158  Identities=11%  Similarity=-0.012  Sum_probs=139.8

Q ss_pred             HcCCCHHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437          438 CGARKIDEAINVYQGIV--------MNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE  509 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (645)
                      ...|++++|.+.+++..        +..+. +...+..+..++.+.|++++|.+.|+++.+.. +.+...|..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            77899999999999998        54444 67788889999999999999999999999875 4578899999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          510 GGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .|++++|++.|++..+  +.| +...+..+..++...|++++ .+.++++.+.++. +...|..+..++.+.|++++|++
T Consensus       480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999998  456 67889999999999999999 9999999987765 78899999999999999999999


Q ss_pred             HHHHHHHCCCCCChh
Q 006437          589 QLVEMCNLGLIPDEM  603 (645)
Q Consensus       589 ~~~~m~~~g~~p~~~  603 (645)
                      .++++.  ...|+..
T Consensus       556 ~~~~al--~l~P~~~  568 (681)
T 2pzi_A          556 TLDEVP--PTSRHFT  568 (681)
T ss_dssp             HHHTSC--TTSTTHH
T ss_pred             HHHhhc--ccCcccH
Confidence            999997  4567655

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.81  E-value=4.1e-07  Score=81.62  Aligned_cols=166  Identities=13%  Similarity=0.033  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCCCcHHHH
Q 006437          390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR----KIDEAINVYQGIVMNNPAVNAHVH  465 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  465 (645)
                      .++..+..+-..|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|.++|++..+.+   +...+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            356677777888888999999999999998876   55667777777777 6    8999999999998765   66777


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437          466 TAIVDRLIE----AGRCHKAIQLFRRAIVEKYP-LDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYR  536 (645)
Q Consensus       466 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~  536 (645)
                      ..+...|..    .+++++|.+.|++..+.+.. .++..+..|...|..    .++.++|+..|++..+.  ..+...+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            888888887    88999999999999987611 027888999999988    78999999999999884  34556777


Q ss_pred             HHHHHHHhc-C-----CHHHHHHHHHHHHHCCCC
Q 006437          537 VMLLSFCKE-R-----NIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       537 ~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~~  564 (645)
                      .|...|... |     +.++|..++++..+.|..
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            888888653 3     899999999999887743

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=2.9e-06  Score=79.75  Aligned_cols=211  Identities=9%  Similarity=-0.009  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----HcC---CCHHHHHHHHHHHHHcCCCCcH
Q 006437          392 LVVYNALLSYFCKAG--FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGL----CGA---RKIDEAINVYQGIVMNNPAVNA  462 (645)
Q Consensus       392 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~  462 (645)
                      ...|+.--..+...|  ++++++..++.+.....+ +...++.--..+    ...   ++++++..+++.+.+..++ +.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny  144 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NH  144 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CH
Confidence            445666666666677  899999999998875322 223333322222    334   7889999999999998877 88


Q ss_pred             HHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCC-CHH
Q 006437          463 HVHTAIVDRLIEAGRCH--KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR------TEEAYILYSQMKHIAVPP-NAY  533 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~p-~~~  533 (645)
                      .+|+.-.-++.+.|.++  ++++.++++++.+ +-|...|+.-...+.+.++      ++++++.++++..  ..| |..
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~S  221 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPS  221 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHH
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCcc
Confidence            88888777788888888  9999999999876 4578888888887777776      8999999999887  445 788


Q ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--hhHHH
Q 006437          534 TYRVMLLSFCKERN-IKMVKRLLQDVIDAR--IELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM--WRKLG  608 (645)
Q Consensus       534 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--w~~~~  608 (645)
                      .|+.+...+.+.|+ .+.+..+.+++.+.+  -..++..+..++++|.+.|+.++|+++++.+.+. +.|-..  |.+..
T Consensus       222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~~  300 (306)
T 3dra_A          222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHHH
Confidence            89888888888887 444556776665533  1227888999999999999999999999998742 566555  66543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.79  E-value=2.3e-08  Score=84.17  Aligned_cols=141  Identities=10%  Similarity=-0.014  Sum_probs=112.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437          401 YFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       401 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (645)
                      .+...|++++|+..++.....  .|+ ...+..+...|...|++++|.+.|++.++..+. +...+..+..+|.+.|+++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence            344567888999888887654  233 455667888899999999999999999998877 7889999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437          480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL-YSQMKHIAVPP-NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  547 (645)
                      +|...|+++++.. |-+...|..+...|.+.|+.++|.+. +++..+  +.| ++.+|......+...|+
T Consensus        83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999875 44688899999999999998876665 588877  567 56677766666666664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.77  E-value=5.4e-07  Score=85.15  Aligned_cols=165  Identities=12%  Similarity=0.027  Sum_probs=125.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHH-HH
Q 006437          116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNI-AL  192 (645)
Q Consensus       116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-ll  192 (645)
                      +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..  .|+...... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            4456677788888889999999999999988764 5577888889999999999999999999886  344432222 22


Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCH
Q 006437          193 CNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRL  271 (645)
Q Consensus       193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~  271 (645)
                      ..+.+.++.++|...+++..+.. +.+...+..+...+...|++++|...|..+.+..+.. +...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            33567778888888888887764 3356778888888888888888888888888764332 256778888888888888


Q ss_pred             HHHHHHHHHHH
Q 006437          272 DMAGYLWEKMV  282 (645)
Q Consensus       272 ~~a~~~~~~m~  282 (645)
                      ++|...|++..
T Consensus       272 ~~a~~~~r~al  282 (287)
T 3qou_A          272 DALASXYRRQL  282 (287)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            88877777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.74  E-value=1.8e-07  Score=98.27  Aligned_cols=152  Identities=12%  Similarity=-0.042  Sum_probs=115.6

Q ss_pred             cCCcccHHHHHhc-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006437          373 SGRFSLLPKLVCG-LEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVY  450 (645)
Q Consensus       373 ~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  450 (645)
                      .|++++|.+.+++ ....| +...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4677888888844 33444 47788888999999999999999999988863 335678888888999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCC
Q 006437          451 QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG---GRTEEAYILYSQMKHIA  527 (645)
Q Consensus       451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~  527 (645)
                      ++..+..+. +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.+++..+.+
T Consensus        81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999988766 67888899999999999999999999998875 44678888999999999   99999999999988743

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.74  E-value=3.7e-07  Score=79.14  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHH-HHhc
Q 006437          122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCN-LCKL  198 (645)
Q Consensus       122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~-~~~~  198 (645)
                      +......+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..  .|+...+...... +...
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            4455566677777777777777766543 4456677777777777777777777777765  2233222221111 1122


Q ss_pred             CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHH
Q 006437          199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRLDMAGYL  277 (645)
Q Consensus       199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~  277 (645)
                      +...+|+..+++..+.. +-+...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            33344566666665542 1245566666667777777777777777666654332 244566666666666777666666


Q ss_pred             HHHHH
Q 006437          278 WEKMV  282 (645)
Q Consensus       278 ~~~m~  282 (645)
                      |++..
T Consensus       167 y~~al  171 (176)
T 2r5s_A          167 YRRQL  171 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.70  E-value=4.7e-07  Score=73.30  Aligned_cols=106  Identities=10%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      .+......|.+.|++++|.+.|++.++.. |.+...|..+..+|.+.|++++|+..+++..+  +.| +...|..+..++
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHH
Confidence            34455666666666666666666666553 34566666666666666666666666666665  333 455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          543 CKERNIKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      ...|++++|.+.|++.++..+. +...+..|
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l  121 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV  121 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence            6666666666666666665443 44444444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.66  E-value=1.9e-05  Score=74.26  Aligned_cols=214  Identities=11%  Similarity=0.006  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH----Hhc---CCHh
Q 006437          101 ETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE--MYGMVLEAFDEMGRFGFTPNTFARNIVMDVL----FKI---GRVD  171 (645)
Q Consensus       101 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~~  171 (645)
                      ++|+.+++.+.... +-+...++.--..+...+  +++++++.++.+.... +.+..+|+.--.++    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            45555555555543 223333444444444444  5666666666665543 33444555443333    333   4455


Q ss_pred             HHHHHHhhcC---CCChhhHHHHHHHHHhcCCcc--hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------HHHHH
Q 006437          172 LGIKVLKETQ---LPNFLSFNIALCNLCKLNDVS--NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR------IAEAY  240 (645)
Q Consensus       172 ~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~  240 (645)
                      +++++++++.   +.|..+|+--.-.+.+.|.++  ++++.++.+.+.+.. |...|+.-...+...+.      ++++.
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl  206 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL  206 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            5555555443   334444444444444445555  555556555554322 44445444444444443      55555


Q ss_pred             HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHcC--CCCChhchHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLD-MAGYLWEKMVQNG--CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE  317 (645)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  317 (645)
                      +.++.++... +-|...|+.+-..+.+.|+.. .+..+.+++.+.+  -+.+...+..+...|.+.|+.++|.++++.+.
T Consensus       207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            5555555543 225555555555555554422 2333444333211  11234444555555555555555555555554


Q ss_pred             h
Q 006437          318 S  318 (645)
Q Consensus       318 ~  318 (645)
                      +
T Consensus       286 ~  286 (306)
T 3dra_A          286 S  286 (306)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.64  E-value=1.2e-06  Score=74.96  Aligned_cols=130  Identities=14%  Similarity=0.060  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+...
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3445667777888888888888888887764 4467788888888888999999999998888742 3367788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 006437          542 FCKERNIKMVKRLLQDVIDARIELDYHTSIR--LTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +...|++++|.+.++++.+..+. +...+..  ++..+.+.|++++|++.+++..
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            89999999999999988876544 4455533  3444778889999998888765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=1.4e-06  Score=70.06  Aligned_cols=115  Identities=15%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4455566666666777777777777666543 3355666666677777777777777777766532 2355666666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437          542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK  579 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  579 (645)
                      +...|++++|...++++.+..+. +...+..+...+.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence            77777777777777776665433 45555555554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.63  E-value=1.3e-06  Score=78.34  Aligned_cols=124  Identities=10%  Similarity=-0.010  Sum_probs=62.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437          432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG  511 (645)
Q Consensus       432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  511 (645)
                      .+...+...|++++|...+++..    .++...+..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence            33444455555555555555442    3344555555555555555555555555555443 234445555555555555


Q ss_pred             CHHHHHHHHHHHhhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          512 RTEEAYILYSQMKHIAVPPNA----------------YTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       512 ~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      ++++|+..|++..+.. +.+.                ..+..+..++...|++++|.+.++++.+.
T Consensus        86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            5555555555555421 1111                44445555555555555555555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.62  E-value=2.7e-06  Score=80.68  Aligned_cols=162  Identities=7%  Similarity=0.021  Sum_probs=114.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCC-CcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 006437          434 LRGLCGARKIDEAINVYQGIVMNNPA-VNA----HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVA  503 (645)
Q Consensus       434 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  503 (645)
                      +..+...|++++|..++++....... ++.    ..+..+...+...|++++|...++++.+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            44556667777777777766654322 221    12334666677777888888888888774322 22    2368888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 006437          504 IRGLLEGGRTEEAYILYSQMKH----I-AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIELD-YHTSIR  572 (645)
Q Consensus       504 ~~~~~~~g~~~~A~~~~~~m~~----~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~  572 (645)
                      ...|...|++++|+..++++.+    . +..+ ...++..+...|.+.|++++|.+.+++..+.    +..+. ...|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            8899999999999999988773    1 1222 2347888999999999999999999988742    22222 678999


Q ss_pred             HHHHHHhcCC-hhHHHHHHHHHHH
Q 006437          573 LTKFIFKFHS-SSSAVNQLVEMCN  595 (645)
Q Consensus       573 l~~~~~~~g~-~~~A~~~~~~m~~  595 (645)
                      ++.+|.+.|+ +++|.+.+++...
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            9999999995 5999999988763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.62  E-value=4.9e-07  Score=86.48  Aligned_cols=192  Identities=13%  Similarity=-0.002  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--cHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP---AV--NAH  463 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~  463 (645)
                      .|+.....|...|++++|...|.+..+.    +-.+ -..+|..+...|...|++++|...+++.+....   .+  ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5666677788888888888888776653    1111 134667777777788888888888887765421   11  134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-D----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPN-AY  533 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~  533 (645)
                      ++..+..+|.. |++++|++.|++.++..... +    ..+++.+...|.+.|++++|+..|++..+.    +..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            56667777777 88888888888877642110 1    356777778888888888888888887652    11111 22


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHhcCChhHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIELD-Y---HTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .+..+...+...|++++|...+++.. ..+... .   .....++.++ ..|+.+.+.+
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            55556666677788888888888877 433222 1   1233444444 4566655555

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.61  E-value=2.3e-06  Score=76.71  Aligned_cols=123  Identities=7%  Similarity=-0.087  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437          397 ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG  476 (645)
Q Consensus       397 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (645)
                      .+...+...|++++|+..|++..    .|+...+..+...+...|++++|...+++.+...+. +...+..+..+|...|
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence            33444445555555555554432    334444444555555555555555555555444433 3444445555555555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          477 RCHKAIQLFRRAIVEKYPLDV----------------VSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ++++|.+.|+++.+.. +.+.                ..+..+..+|.+.|++++|...+++..+
T Consensus        86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5555555555554432 1111                3444455555555555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.61  E-value=6.5e-06  Score=78.05  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc----HHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKG-FTPDNY----SFVGLLRGLCGARKIDEAINVYQGIVMNNPA-VN----AHV  464 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~  464 (645)
                      +...+..+...|++++|..++++..+.. ..|+..    .+..+...+...+++++|...++++...... .+    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3344677889999999999999988743 222321    2334566667788999999999999885322 22    336


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVE-----KYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IAVPPN-AY  533 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~  533 (645)
                      ++.+..+|...|++++|...|+++.+.     +..+ ...+|..+...|.+.|++++|+..+++..+    .+..+. ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            889999999999999999999998842     1112 245788999999999999999999998764    222232 67


Q ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKER-NIKMVKRLLQDVID  560 (645)
Q Consensus       534 ~~~~ll~~~~~~g-~~~~a~~~~~~~~~  560 (645)
                      +|..+..++.+.| ++++|.+.++++..
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            8999999999999 46999999988764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.57  E-value=8.3e-07  Score=74.15  Aligned_cols=96  Identities=10%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      ...+..+...+.+.|++++|+..|++..+  +.| +...|..+..+|...|++++|...++++.+.++. ++..|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            44555666666666666666666666665  334 4566666666666666666666666666665544 4556666666


Q ss_pred             HHHhcCChhHHHHHHHHHHH
Q 006437          576 FIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       576 ~~~~~g~~~~A~~~~~~m~~  595 (645)
                      +|.+.|++++|++.|++..+
T Consensus       113 ~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.57  E-value=2.3e-06  Score=69.47  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL  540 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  540 (645)
                      +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            34455666677777777777777777777653 3456677777777778888888888888777632 225667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 006437          541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSS  583 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  583 (645)
                      .+...|++++|.+.++++.+..+. +...+..+..++.+.|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence            788888888888888877775543 566777777777776654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.57  E-value=7.2e-06  Score=77.73  Aligned_cols=163  Identities=7%  Similarity=-0.002  Sum_probs=109.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hhhHH
Q 006437          432 GLLRGLCGARKIDEAINVYQGIVMNNPAVN-----AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP---LD--VVSYT  501 (645)
Q Consensus       432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~  501 (645)
                      ..+..+...|++++|.+.+....+......     ...+..+...+...|++++|...+++..+....   +.  ..+|+
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344455566666666666666555433211     112334556667778888888888887754211   11  44788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----Cc-CHHHH
Q 006437          502 VAIRGLLEGGRTEEAYILYSQMKHI-AVPPN-----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARI----EL-DYHTS  570 (645)
Q Consensus       502 ~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~~~  570 (645)
                      .+...|...|++++|+..+++..+. ...|+     ..++..+...|...|++++|.+.+++..+...    .. -..+|
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            8888888889999998888887621 01222     25788888888999999999999888775321    11 16778


Q ss_pred             HHHHHHHHhcCChhHH-HHHHHHHH
Q 006437          571 IRLTKFIFKFHSSSSA-VNQLVEMC  594 (645)
Q Consensus       571 ~~l~~~~~~~g~~~~A-~~~~~~m~  594 (645)
                      ..++.+|.+.|++++| ...+++..
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            8888999999999999 67677764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.56  E-value=5.6e-06  Score=78.51  Aligned_cols=167  Identities=13%  Similarity=0.014  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---Cc--HH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-N----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPA---VN--AH  463 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~  463 (645)
                      .+...+..+...|++++|.+.+++..+...... .    ..+..+...+...|++++|...+++.......   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            445567778899999999999998877532211 1    22334555667889999999999998764322   12  45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVE--KYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA  532 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~  532 (645)
                      +++.+...|...|++++|...|+++.+.  ..+.+    ..+++.+...|.+.|++++|+..+++..+.    +... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7889999999999999999999998732  11111    258899999999999999999999997642    1111 16


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMV-KRLLQDVID  560 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~  560 (645)
                      .+|..+...|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7889999999999999999 777887753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.56  E-value=2e-06  Score=69.54  Aligned_cols=106  Identities=14%  Similarity=0.057  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      .+......+.+.|++++|.+.|++.++..+. +...+..+..+|.+.|++++|+..|++.++.+ +.+...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            4455566677777777777777777776655 66777777778888888888888888777764 445777888888888


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPPN-AYTYRVM  538 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l  538 (645)
                      ..|++++|++.|++..+  +.|+ ...+..+
T Consensus        93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l  121 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ--VDPSNEEAREGV  121 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence            88888888888888877  5563 4444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.54  E-value=1.9e-06  Score=71.96  Aligned_cols=93  Identities=13%  Similarity=-0.046  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFC  543 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~  543 (645)
                      +..+...+.+.|++++|...|++++... |.+...|..+..+|...|++++|+..|++..+  +.| ++..|..+..+|.
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence            3334444444444444444444444432 22344444444444455555555555554444  223 3444444444455


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 006437          544 KERNIKMVKRLLQDVID  560 (645)
Q Consensus       544 ~~g~~~~a~~~~~~~~~  560 (645)
                      ..|++++|...|+++.+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.54  E-value=9.5e-07  Score=78.52  Aligned_cols=157  Identities=8%  Similarity=-0.055  Sum_probs=98.4

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCH
Q 006437          439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYP-LDVVSYTVAIRGLLEGGRT  513 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~  513 (645)
                      ..|++++|.++++.+.. .+......+..+...+...|++++|...+++..+.    +.+ ....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45666666664433322 22234556666777777777777777777766542    111 1345677777778888888


Q ss_pred             HHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCC
Q 006437          514 EEAYILYSQMKHI----AVPP--NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHS  582 (645)
Q Consensus       514 ~~A~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~  582 (645)
                      ++|...+++..+.    +-.|  ....+..+...+...|++++|...+++..+.    +.. .-...+..+..++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888776542    1111  1345677777888888888888888877642    111 113346777888888888


Q ss_pred             hhHHHHHHHHHHHC
Q 006437          583 SSSAVNQLVEMCNL  596 (645)
Q Consensus       583 ~~~A~~~~~~m~~~  596 (645)
                      +++|.+.+++..+.
T Consensus       163 ~~~A~~~~~~al~~  176 (203)
T 3gw4_A          163 LLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=2.3e-06  Score=69.85  Aligned_cols=118  Identities=11%  Similarity=0.050  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL  540 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  540 (645)
                      +...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44455556666666666666666666666543 3355666666666666777777777777666532 224566666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                      .+...|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            677777777777777766664433 3445555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.52  E-value=1.1e-06  Score=76.21  Aligned_cols=120  Identities=10%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH--HH
Q 006437          439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LLEGGRT--EE  515 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~  515 (645)
                      ..|++++|...++..+...+. +...+..+..+|...|++++|...|+++.+.. +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            445566666666665555443 44555556666666666666666666655543 2344555555555 4555555  66


Q ss_pred             HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          516 AYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       516 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      |...++++.+.  .| +...+..+...+...|++++|...++++.+..
T Consensus       100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            66666665552  23 34555555555666666666666666655543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.52  E-value=3.8e-07  Score=76.29  Aligned_cols=94  Identities=11%  Similarity=-0.070  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      .+..+...+.+.|++++|...|++++... +.+...|..+..+|...|++++|+..|++..+  +.| +...+..+..+|
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence            34444455555555555555555554443 23444555555555555555555555555544  223 344444555555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 006437          543 CKERNIKMVKRLLQDVID  560 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~~  560 (645)
                      ...|++++|.+.++++.+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.52  E-value=2e-06  Score=83.16  Aligned_cols=130  Identities=8%  Similarity=0.022  Sum_probs=102.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD---------------VVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +...+..+...|.+.|++++|...|++.++.. +.+               ...|..+..+|.+.|++++|+..+++..+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556667777777788888888887777654 222               47888888889999999999999999887


Q ss_pred             CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006437          526 IAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA-VNQLVEMC  594 (645)
Q Consensus       526 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~  594 (645)
                      .  .| +...+..+..+|...|++++|...|+++++..+. +...+..+..++.+.|+.++| .+.+++|.
T Consensus       225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  45 6788888889999999999999999998887655 677888888889888988888 44666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.51  E-value=4.4e-06  Score=71.27  Aligned_cols=127  Identities=14%  Similarity=0.060  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL  508 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (645)
                      .+..+...+...|++++|...++......+. +...+..+..++...|++++|...+++..+.. +.+...|..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3445555666677777777777777666544 56667777777888888888888888777664 445677788888888


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006437          509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVM--LLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~  559 (645)
                      ..|++++|...++++.+.  .| +...+..+  ...+...|++++|.+.++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            888888888888887763  34 44444333  333667788888888877654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.51  E-value=6.3e-07  Score=74.95  Aligned_cols=97  Identities=6%  Similarity=-0.024  Sum_probs=61.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLT  574 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  574 (645)
                      +...+..+...+.+.|++++|+..|++...  ..| +...|..+..+|...|++++|...++++.+.++. ++..+..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence            344555566666666677777766666665  234 5566666666666666777777666666665443 455666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 006437          575 KFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       575 ~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .+|...|++++|.+.+++..+
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666777777666666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.48  E-value=7.4e-07  Score=83.86  Aligned_cols=196  Identities=8%  Similarity=-0.025  Sum_probs=134.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++..+. +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34567777888999999999999999988853 236778888889999999999999999999888765 7788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  550 (645)
                      +|...|++++|...|+++.+.. +.+...+...+....+.   .++.. +..........+......+...  ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence            9999999999999999987653 11111222222222211   11111 2222233344455554444332  3688899


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 006437          551 VKRLLQDVIDARIELDYHTSIRLTKFIFKF-HSSSSAVNQLVEMCNL  596 (645)
Q Consensus       551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  596 (645)
                      |.+.+++..+..+. +......+...+.+. +++++|.++|+++.+.
T Consensus       154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99888887765432 444555555556555 6788999999988653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.47  E-value=4.4e-06  Score=79.80  Aligned_cols=188  Identities=9%  Similarity=-0.022  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHhcCCcccHHHHHh-------cCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C-CCC--H
Q 006437          361 YTFCSLLSTVCLSGRFSLLPKLVC-------GLEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG--F-TPD--N  427 (645)
Q Consensus       361 ~~~~~ll~~~~~~~~~~~a~~~~~-------~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~--~  427 (645)
                      ..|......|...|++++|...+.       ..+... -...|+.+...|.+.|++++|+..|++..+.-  . .+.  .
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            356667777888888888877762       222111 13467778888888899999999888766531  0 111  3


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-h
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPLD-V  497 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~  497 (645)
                      .++..+...|.. |++++|...+++.+......     ...++..+...|.+.|++++|...|++..+..    ..+. .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            456677777777 99999999988877653211     14567778888889999999999988887641    1111 2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN------AYTYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~  553 (645)
                      ..+..+..++...|++++|...|++.. .  .|+      ...+..++.++ ..|+.+.+.+
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            356666677777899999999998887 3  232      12344445544 4566655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.46  E-value=3.9e-07  Score=80.82  Aligned_cols=133  Identities=10%  Similarity=-0.051  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV----------------VSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      ...+..+...+.+.|++++|...|++.++.. +.+.                ..|..+..+|.+.|++++|+..+++..+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3345556677777788888888887777643 1122                6788888889999999999999999887


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCC
Q 006437          526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAV-NQLVEMCNLG  597 (645)
Q Consensus       526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g  597 (645)
                      .. +.+...+..+..+|...|++++|.+.+++..+..+. +...+..+..++...++.+++. ..+..|...|
T Consensus       117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            42 336788888899999999999999999999886554 6778888888888888777776 5666665444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.45  E-value=8.3e-06  Score=65.43  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      ..+..+...+...|++++|.+.++++....+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            34445555555566666666666665555433 44556666666666777777777776666543 34566666777777


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFC  543 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~  543 (645)
                      ...|++++|...++++.+.  .| +...+..+...+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence            7777777777777776653  34 4444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=6.5e-07  Score=84.24  Aligned_cols=190  Identities=16%  Similarity=0.043  Sum_probs=128.9

Q ss_pred             CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006437          426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIR  505 (645)
Q Consensus       426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  505 (645)
                      +...+..+...+...|++++|...++..+...+. +...+..+..+|.+.|++++|...++++.+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4556777888889999999999999999988766 78889999999999999999999999998774 456888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437          506 GLLEGGRTEEAYILYSQMKHIAVPPNA-YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS  584 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  584 (645)
                      +|...|++++|+..|++..+  +.|+. ..+...+....+.   ..+.. +..........+......+...+  .|+.+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRLI--AAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence            99999999999999999876  33421 1111122221111   11112 22233334444555555554433  68899


Q ss_pred             HHHHHHHHHHHCCCCCChhhhHHHhh--h----cccCCccccccccccc
Q 006437          585 SAVNQLVEMCNLGLIPDEMWRKLGLL--S----DETMTPVSLFDGFVPC  627 (645)
Q Consensus       585 ~A~~~~~~m~~~g~~p~~~w~~~~~L--~----~~~~~~~~~~~~~~~~  627 (645)
                      +|++.+++..  ...|+..+....+-  .    +...++.+++....+.
T Consensus       153 ~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNH--EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGG--TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhh--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999998887  45777652222221  1    3344566666555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.43  E-value=7.7e-06  Score=74.98  Aligned_cols=187  Identities=12%  Similarity=-0.041  Sum_probs=119.6

Q ss_pred             cCCChHHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhhcCChhHHHHHHHHHHH------------cCCC---
Q 006437           59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHM-------ISVVTRLTGRFETVRGIVGELAR------------VGCV---  116 (645)
Q Consensus        59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~~a~~~~~~m~~------------~~~~---  116 (645)
                      ..+++..|.+.|..+....+  -....|.-+       ..++.+ .++..++...+..-..            .|.-   
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~-~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFR-AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHH-HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHH-HHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence            46789999999999888655  478888877       455555 3444555444444333            1100   


Q ss_pred             -----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC-CCh----h
Q 006437          117 -----IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL-PNF----L  186 (645)
Q Consensus       117 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~----~  186 (645)
                           --..........+...|++++|.++|+.+...+  |+....-.+...+.+.+++++|+..|+.... ++.    .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                 012334456667778888888888888777643  3332555566677788888888888876542 222    2


Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN--VRMFEILLNCFCKMGRIAEAYQLLGLMITLG  250 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (645)
                      .+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            455666677777777788777777764322143  2345556666777777777777777777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.43  E-value=6.2e-06  Score=75.63  Aligned_cols=191  Identities=10%  Similarity=-0.019  Sum_probs=134.2

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCC-HhhHHHH-------HHHHHcCCCHHHHHHHHHHHHHcCC-----CCc---------
Q 006437          404 KAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL-------LRGLCGARKIDEAINVYQGIVMNNP-----AVN---------  461 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~---------  461 (645)
                      ..++...|.+.|.+..+..  |+ ...|..+       ...+.+.++..++...+.......+     ..+         
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5788999999999988853  33 3445544       2333333334444444443333110     001         


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HH
Q 006437          462 ------AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AY  533 (645)
Q Consensus       462 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~  533 (645)
                            ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence                  2344567788899999999999999887654  543366666678889999999999998665421 121  34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPD  601 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~  601 (645)
                      .+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|.++|+++.+.  .|+
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~  240 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE  240 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence            78888999999999999999999998544324  3456778888999999999999999999965  455

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.42  E-value=6e-06  Score=66.72  Aligned_cols=95  Identities=12%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      .+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+  +.| +...+..+..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence            44455556666666666666666666553 33556666666666666666666666666665  334 455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006437          543 CKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~~~  561 (645)
                      ...|++++|.+.++++.+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            6666666666666666653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.41  E-value=7.2e-06  Score=66.46  Aligned_cols=116  Identities=20%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      ..+..+...+...|+++.|...++......+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            34444555555666666666666666555443 45556666666667777777777777666553 33466666777777


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  547 (645)
                      ...|++++|...+++..+.  .| +...+..+..++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence            7777777777777776663  34 55566666666665554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.41  E-value=5e-06  Score=67.73  Aligned_cols=97  Identities=13%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      ...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence            4455555555555555555555555555432 123344444444444455555555555544444332 33344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 006437          472 LIEAGRCHKAIQLFRRAIV  490 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~  490 (645)
                      +.+.|++++|.+.|++..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            4444444444444444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.39  E-value=1.3e-06  Score=72.47  Aligned_cols=95  Identities=12%  Similarity=-0.064  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      .+..+...+.+.|++++|...|+++.... |.+...|..+..+|.+.|++++|+..|++..+.  .| +...+..+..++
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence            34445556666666666666666666553 335666666666666667777777776666653  33 455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006437          543 CKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       543 ~~~g~~~~a~~~~~~~~~~  561 (645)
                      ...|++++|.+.++++.+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6667777777666666653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.39  E-value=4.8e-06  Score=67.39  Aligned_cols=95  Identities=12%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPN----AYTYRVM  538 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l  538 (645)
                      +..+...+.+.|++++|++.|++.++.. |.+...|+.+..+|.+.|++++|++.+++..+..  ..++    ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3445555555556666666655555543 3345555555555556666666665555554311  0011    1244445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 006437          539 LLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       539 l~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ..++...|++++|++.+++.++
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.38  E-value=0.00024  Score=67.41  Aligned_cols=66  Identities=8%  Similarity=-0.051  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437          445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR-------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR  512 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  512 (645)
                      ++.+.++++++..+. |...|+.....+.+.++       ++++++.+++++... +-|...|+.+-..+.+.|+
T Consensus       185 eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          185 SELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            455555555555444 44445444444444443       455555555555443 3355555555555544443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.38  E-value=6e-06  Score=79.87  Aligned_cols=95  Identities=13%  Similarity=0.053  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      ...+..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|++..+  +.| +...+..+..
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence            4677888889999999999999999988875 45788899999999999999999999999888  456 6778888888


Q ss_pred             HHHhcCCHHHH-HHHHHHHH
Q 006437          541 SFCKERNIKMV-KRLLQDVI  559 (645)
Q Consensus       541 ~~~~~g~~~~a-~~~~~~~~  559 (645)
                      ++...|+.++| ..+++.|.
T Consensus       273 ~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888 44566554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.38  E-value=2.3e-06  Score=74.13  Aligned_cols=125  Identities=8%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCCH--H
Q 006437          403 CKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR-LIEAGRC--H  479 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  479 (645)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.....+. +...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            35677888888888877753 345677888888888999999999999998887665 66777788888 7788998  9


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006437          480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA  532 (645)
Q Consensus       480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~  532 (645)
                      +|...++++.+.. +.+...+..+...|...|++++|...++++.+  ..|+.
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~  148 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence            9999999988775 44678888889999999999999999999887  44543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.37  E-value=0.00022  Score=67.67  Aligned_cols=170  Identities=11%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-C-CHhHH
Q 006437           97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE-MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI-G-RVDLG  173 (645)
Q Consensus        97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A  173 (645)
                      ....++|+++++.+.... +-+...++.--..+...+ ++++++..++.+.... +.+..+|+.-..++.+. + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence            344456666666666654 234444554444455555 4777777777777654 45666666666666555 5 66677


Q ss_pred             HHHHhhcCC---CChhhHHHHHHHHHhcCCcc--------hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------
Q 006437          174 IKVLKETQL---PNFLSFNIALCNLCKLNDVS--------NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR-------  235 (645)
Q Consensus       174 ~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------  235 (645)
                      +++++++..   .|..+|+--.-.+.+.|.++        ++++.++++.+..+ -|...|+.....+.+.++       
T Consensus       145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence            777766653   33344444443444444444        66666666666542 255566665555555554       


Q ss_pred             HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 006437          236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRR  270 (645)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  270 (645)
                      ++++.+.++..+... +-|...|+.+-..+.+.|.
T Consensus       224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            456666666666553 2255556555544444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.37  E-value=1.6e-05  Score=62.88  Aligned_cols=94  Identities=16%  Similarity=0.173  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK  544 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  544 (645)
                      +..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            3334444444455555555554444432 2234444444444444455555555554444421 1134444444444444


Q ss_pred             cCCHHHHHHHHHHHHH
Q 006437          545 ERNIKMVKRLLQDVID  560 (645)
Q Consensus       545 ~g~~~~a~~~~~~~~~  560 (645)
                      .|++++|.+.+++..+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            4555555555444444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=5.3e-05  Score=71.60  Aligned_cols=201  Identities=12%  Similarity=0.072  Sum_probs=150.3

Q ss_pred             HHcCChH-HHHHHHHHHHHCCCCCCHhh-HHH---HHHHHHcC-------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437          403 CKAGFPN-QAVKLYNTMLDKGFTPDNYS-FVG---LLRGLCGA-------RKIDEAINVYQGIVMNNPAVNAHVHTAIVD  470 (645)
Q Consensus       403 ~~~g~~~-~a~~~~~~m~~~~~~p~~~~-~~~---ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  470 (645)
                      .+.|.++ +|+.+++.+...  .|+..| ++.   ++......       ..++++..+++.+...+++ +..+|+.-.-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            3455554 789999888875  455433 322   22222221       1267889999999988887 7778887777


Q ss_pred             HHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 006437          471 RLIEAG--RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR-TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE--  545 (645)
Q Consensus       471 ~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--  545 (645)
                      ++.+.+  .+++++.+++++.+.. +-|..+|+.-...+...|. ++++++.++++.+.. +-|...|+.....+...  
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence            777777  4899999999999876 5688899988888888888 699999999999843 33778888777776655  


Q ss_pred             ------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCh
Q 006437          546 ------------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF-----------HSSSSAVNQLVEMCNLGLIPDE  602 (645)
Q Consensus       546 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~  602 (645)
                                  +.++++.+.++..+...+. |...|+.+-..+.+.           +.++++++.++++.  ...|+.
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell--e~~pd~  271 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ--ELEPEN  271 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH--HHCTTC
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH--hhCccc
Confidence                        4578899999999987766 888888777777665           45788999999998  478998


Q ss_pred             hhhHHHhhh
Q 006437          603 MWRKLGLLS  611 (645)
Q Consensus       603 ~w~~~~~L~  611 (645)
                      .|...++..
T Consensus       272 ~w~l~~~~~  280 (331)
T 3dss_A          272 KWCLLTIIL  280 (331)
T ss_dssp             HHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            998766643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=1.2e-05  Score=64.91  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      ..+..+...+...|++++|...|++.++..+. +...+..+..+|.+.|++++|...+++.++.. +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            34555566677777888888888777776655 66777788888888888888888888887764 44577788888888


Q ss_pred             HhcCCHHHHHHHHHHHhh
Q 006437          508 LEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~  525 (645)
                      ...|++++|+..|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            888888888888888776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.33  E-value=2.9e-06  Score=70.39  Aligned_cols=98  Identities=6%  Similarity=-0.043  Sum_probs=87.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLT  574 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  574 (645)
                      +...+..+...+.+.|++++|+..|++....  .| +...|..+..++...|++++|...++++.+.++. ++..+..+.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence            4566777888899999999999999999884  45 7888999999999999999999999999987765 678888999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHC
Q 006437          575 KFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       575 ~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      .+|...|++++|.+.+++..+.
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.31  E-value=6.1e-06  Score=73.19  Aligned_cols=60  Identities=12%  Similarity=-0.129  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          222 MFEILLNCFCKMGRIAEAYQLLGLMITL----GTSL--SVNAWTVLIDGFRRLRRLDMAGYLWEKM  281 (645)
Q Consensus       222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m  281 (645)
                      ++..+...+...|++++|.+.+++..+.    +..+  ....+..+...+...|++++|.+.+++.
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444444455555555555555444322    1011  1223444444444455555555444444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.30  E-value=1.7e-05  Score=62.86  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=89.4

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            45667888889999999999999999998742 337888999999999999999999999999987654 6888999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          576 FIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       576 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ++...|++++|.+.+++..+  ..|+..
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~  106 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK--HEANNP  106 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             HHHHHhhHHHHHHHHHHHHH--cCCCCH
Confidence            99999999999999999985  455544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.30  E-value=0.00078  Score=63.65  Aligned_cols=180  Identities=10%  Similarity=0.003  Sum_probs=118.6

Q ss_pred             CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCcHHHHH
Q 006437          390 ADLVVYNALLSYFCKAG--FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK-IDEAINVYQGIVMNNPAVNAHVHT  466 (645)
Q Consensus       390 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~  466 (645)
                      .+..+|+.-...+.+.+  .+++++.+++.+.+.. +-+...|+.-.-.+...|. .+++.+.++.+++..+. |...|+
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~  183 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWH  183 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence            35566666666666666  3788888998888864 2355566655555666677 58888888888888776 677776


Q ss_pred             HHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHH
Q 006437          467 AIVDRLIEA--------------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG-----------GRTEEAYILYS  521 (645)
Q Consensus       467 ~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~  521 (645)
                      .....+.+.              +.++++++.+++.+... |-|...|+.+-..+.+.           +.++++++.++
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            665555554              45788888888888765 55788888776666655           35778888888


Q ss_pred             HHhhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          522 QMKHIAVPPNA-YTYRVMLL---SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       522 ~m~~~~~~p~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      ++.+  +.||. ..+..++.   +....|..+++..+++++++.++. ...-|..+..
T Consensus       263 elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~  317 (331)
T 3dss_A          263 ELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRS  317 (331)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred             HHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence            8887  56753 22222221   122356677778888888774433 3444554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.30  E-value=1.2e-05  Score=65.04  Aligned_cols=106  Identities=10%  Similarity=0.048  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----hhhHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLD----VVSYTV  502 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~  502 (645)
                      .+..+...+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|++.+++.++..  ..++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            4455666677777777777777777776655 56677777777888888888888777776542  0111    235667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRV  537 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  537 (645)
                      +..++...|++++|++.|++..+  ..||+.+...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~  121 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence            77778888888888888888776  4577665443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.26  E-value=1e-05  Score=69.00  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML  539 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll  539 (645)
                      +...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+  +.| +...|..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            45567778888888888888888888888764 44677888888888888888888888888877  345 577788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          540 LSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      .+|...|++++|.+.++++++..+
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCC
Confidence            888888888888888888876543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.25  E-value=8.5e-06  Score=65.22  Aligned_cols=93  Identities=13%  Similarity=0.060  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437          499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI  577 (645)
Q Consensus       499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  577 (645)
                      .+..+...+.+.|++++|+..+++..+  ..| +...|..+..++...|++++|+..++++.+.++. +...+..+..+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344555666677777777777777666  334 5666666777777777777777777777765544 566666777777


Q ss_pred             HhcCChhHHHHHHHHHH
Q 006437          578 FKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       578 ~~~g~~~~A~~~~~~m~  594 (645)
                      .+.|++++|++.+++..
T Consensus        96 ~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           96 TNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            77777777777777766

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.24  E-value=1.1e-05  Score=65.38  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPN----AYTYRV  537 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~  537 (645)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+..  ..++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34555556666666666666666665543 3345556666666666666666666666655421  0111    455666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          538 MLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       538 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      +...+...|++++|.+.++++.+..  |+......+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~  120 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence            6666666666666666666666533  24444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=2.7e-05  Score=64.68  Aligned_cols=95  Identities=17%  Similarity=0.071  Sum_probs=48.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIR  572 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  572 (645)
                      ...+..+...+...|++++|+..|++..+  ..|+    ...+..+...|...|++++|...+++..+..+. +...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence            34444455555555555555555555544  2343    344445555555555555555555555543322 3445555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHH
Q 006437          573 LTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       573 l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +..++...|++++|.+.+++..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555555555555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.23  E-value=2.5e-05  Score=64.04  Aligned_cols=97  Identities=18%  Similarity=0.094  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML  539 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll  539 (645)
                      +...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|+..+++..+.  .| +...+..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence            44555556666666666666666666665543 334555666666666666666666666666552  23 455555666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 006437          540 LSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .++...|++++|...++++.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            666666666666666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.23  E-value=2.3e-05  Score=66.66  Aligned_cols=94  Identities=11%  Similarity=-0.013  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      ..|..+...+.+.|++++|+..|++..+  +.| +...|..+..+|...|++++|...++++++..+. +...|..+..+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   88 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3444444445555555555555555444  223 3444445555555555555555555555444332 34444555555


Q ss_pred             HHhcCChhHHHHHHHHHH
Q 006437          577 IFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       577 ~~~~g~~~~A~~~~~~m~  594 (645)
                      |.+.|++++|.+.+++..
T Consensus        89 ~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHH
Confidence            555555555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.23  E-value=1.9e-05  Score=61.77  Aligned_cols=100  Identities=8%  Similarity=-0.027  Sum_probs=69.8

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE-LDYHTSIRLT  574 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  574 (645)
                      +...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.... .+...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            45566667777777777777777777776632 235667777777777777777777777777765322 1466777777


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHC
Q 006437          575 KFIFKF-HSSSSAVNQLVEMCNL  596 (645)
Q Consensus       575 ~~~~~~-g~~~~A~~~~~~m~~~  596 (645)
                      .++.+. |++++|.+.+++....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            777777 8888888887777643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=5.3e-05  Score=62.87  Aligned_cols=110  Identities=11%  Similarity=-0.036  Sum_probs=73.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTY  535 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~  535 (645)
                      +...+..+...+...|++++|.+.|++..+..  |+    ...|..+..+|...|++++|+..+++..+.  .| +...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence            45556666677777777777777777776653  44    566777777777777777777777777663  34 56677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      ..+..++...|++++|.+.+++..+..+. +...+..+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~  141 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence            77777777778888888777777765433 4444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.19  E-value=2.6e-05  Score=63.89  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK  575 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  575 (645)
                      +...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            34444444555555555555555555544421 113444444555555555555555555555443332 3444445555


Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 006437          576 FIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       576 ~~~~~g~~~~A~~~~~~m~  594 (645)
                      ++...|++++|.+.+++..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            5555555555555554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.18  E-value=1.6e-05  Score=64.30  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 006437          429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--PLD----VVSYTV  502 (645)
Q Consensus       429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~  502 (645)
                      .+..+...+...|+++.|...++......+. +...+..+..++...|++++|...++++.....  +++    ..+|..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3445555666666666666666666665543 455666677777777777777777777665430  111    566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS  541 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  541 (645)
                      +..++...|++++|.+.++++.+  ..|+......+...
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~  121 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence            77788888888888888888777  44665555444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.18  E-value=1.7e-05  Score=62.17  Aligned_cols=97  Identities=15%  Similarity=0.039  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP--NAYTYRVMLLS  541 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~  541 (645)
                      .+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            34445555556666666666666655543 3345555666666666666666666666665532 12  35556666666


Q ss_pred             HHhc-CCHHHHHHHHHHHHHCC
Q 006437          542 FCKE-RNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       542 ~~~~-g~~~~a~~~~~~~~~~~  562 (645)
                      +... |++++|.+.++++.+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcc
Confidence            6666 66666666666665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.15  E-value=3.5e-05  Score=67.99  Aligned_cols=93  Identities=13%  Similarity=-0.016  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLS  541 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~  541 (645)
                      ..+..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|++..+  +.| +...+..+...
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHH
Confidence            566677778888888888888888887764 44677788888888888888888888888877  345 56666666666


Q ss_pred             HHhcCCHHHHH-HHHHHH
Q 006437          542 FCKERNIKMVK-RLLQDV  558 (645)
Q Consensus       542 ~~~~g~~~~a~-~~~~~~  558 (645)
                      +...++.+++. ..+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          166 VNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            66666555554 334443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.13  E-value=2e-05  Score=66.68  Aligned_cols=133  Identities=8%  Similarity=-0.002  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA  532 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~  532 (645)
                      .++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+.    +-.+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34555666677777777777777666543100 11    236677777788888888888888876542    1111 14


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .++..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46777778888888888888888877642    111 1245677888888899999999998888763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.13  E-value=2.2e-05  Score=62.75  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE  545 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~  545 (645)
                      .+...+.+.|++++|...|+++++.. |.+...|..+..++...|++++|+..|++..+  +.| +...+..+..++...
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence            34445555566666666666555543 33455555566666666666666666666555  334 445555555666666


Q ss_pred             CCHHHHHHHHHHHHH
Q 006437          546 RNIKMVKRLLQDVID  560 (645)
Q Consensus       546 g~~~~a~~~~~~~~~  560 (645)
                      |++++|...++++++
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666665554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.0001  Score=74.18  Aligned_cols=196  Identities=13%  Similarity=-0.001  Sum_probs=138.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cH
Q 006437          400 SYFCKAGFPNQAVKLYNTMLDKGFTPDN----------------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-NA  462 (645)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~  462 (645)
                      ..+.+.|++++|++.|..+.+.......                ..+..+...|...|++++|.+.+..+....... +.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            4467789999999999988875322111                236778888999999999999998876642221 11


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC
Q 006437          463 ----HVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVP  529 (645)
Q Consensus       463 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~  529 (645)
                          .+.+.+...+...|+++.|..+++.....    +..+ -..++..+...|...|++++|..+++++...    +-.
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                22333444555678899999988876542    2222 2557788899999999999999999887532    112


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-Cc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          530 P-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA--RI-EL---DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       530 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      | ...++..++..|...|++++|..++++....  .. .|   -...+..++..+...|++++|...+.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2 2457888899999999999999999988642  11 11   135567777788889999999887777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.10  E-value=0.00017  Score=74.63  Aligned_cols=171  Identities=8%  Similarity=0.010  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437          442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR----------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG  511 (645)
Q Consensus       442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  511 (645)
                      ..++|.+.++.++..+++ +..+|+.-..++.+.|+          ++++++.++++.+.. +-+..+|+.-...+.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            345677777777777766 56666665555656555          888888898888775 457778888888888888


Q ss_pred             --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 006437          512 --RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER-NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF--------  580 (645)
Q Consensus       512 --~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  580 (645)
                        +++++++.++++.+.. +-|...|+.-..++.+.| .++++.+.++++++.++. +...|+....++.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              6799999999998843 237888888888888888 889999999988887766 788888887777663        


Q ss_pred             ------CChhHHHHHHHHHHHCCCCCChhhhHHHhhhcccCC
Q 006437          581 ------HSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMT  616 (645)
Q Consensus       581 ------g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~~~~~~  616 (645)
                            +.+++|++.++++......-.+.|.+.+.|.+....
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence                  456889999988885433333449999988854433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.08  E-value=2.2e-05  Score=79.75  Aligned_cols=114  Identities=16%  Similarity=0.088  Sum_probs=48.7

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437          439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI  518 (645)
Q Consensus       439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  518 (645)
                      +.|++++|.+.+++.++..+. +...+..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++
T Consensus        18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444444444444444333 34444444445555555555555555544442 2234444444555555555555555


Q ss_pred             HHHHHhhCCCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006437          519 LYSQMKHIAVPP-NAYTYRVMLLS--FCKERNIKMVKRLLQ  556 (645)
Q Consensus       519 ~~~~m~~~~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~  556 (645)
                      .+++..+.  .| +...+..+..+  +.+.|++++|.+.++
T Consensus        96 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           96 DYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55554442  22 22223333222  444445555554444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.08  E-value=1e-05  Score=82.21  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=97.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                      +...+.+.|++++|.+.++++++.. +.+...|..+..+|.+.|++++|++.+++..+  +.| +...+..+..+|...|
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence            3445678899999999999999875 44688999999999999999999999999998  456 6889999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 006437          547 NIKMVKRLLQDVIDARIELDYHTSIRLTKF--IFKFHSSSSAVNQLV  591 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  591 (645)
                      ++++|.+.++++.+..+. +...+..+..+  +.+.|++++|++.++
T Consensus        89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999986544 44455556655  888899999999988

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.07  E-value=2.8e-05  Score=78.72  Aligned_cols=128  Identities=7%  Similarity=0.016  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD---------------VVSYTVAIRGLLEGGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  527 (645)
                      ..+..+...+.+.|++++|...|+++++.. +.+               ...|..+..+|.+.|++++|+..+++..+. 
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  346 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-  346 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            344555556666666666666666665532 112               467777788888888888888888887773 


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 006437          528 VPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN-QLVEMC  594 (645)
Q Consensus       528 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~  594 (645)
                       .| +...|..+..+|...|++++|...|+++++..+. +...+..+..++.+.|+.++|.+ ++++|.
T Consensus       347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34 5777778888888888888888888888776544 55677777777777777777653 455554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.07  E-value=0.00015  Score=58.54  Aligned_cols=91  Identities=18%  Similarity=0.074  Sum_probs=48.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHH
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDV---VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLL  540 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~  540 (645)
                      +...+...|++++|...|+++.+.. +.+.   ..+..+..++.+.|++++|...++++.+.  .|+    ...+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHH
Confidence            3444555556666666665555432 1122   34555555555666666666666665542  232    344555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 006437          541 SFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      ++...|++++|...++++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            556666666666666665553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.06  E-value=4.2e-05  Score=74.80  Aligned_cols=120  Identities=12%  Similarity=0.044  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIV----------------EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV  528 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  528 (645)
                      +..+...+.+.|++++|.+.|+++++                .. +.+...|..+..+|.+.|++++|+..+++..+  +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~  302 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I  302 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence            34455555566666666666655554                11 22467788888899999999999999999987  4


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          529 PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       529 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .| +...+..+..+|...|++++|.+.++++.+..+. +...+..+..++.+.++.+++.+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 6788888899999999999999999999886654 67788888888888887777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.04  E-value=5.9e-05  Score=60.91  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-A---YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRL  573 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l  573 (645)
                      +..+...+...|++++|...|+++.+.  .|+ .   ..+..+..++...|++++|...++++.+..+...  +..+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            445667888999999999999999873  453 3   5788889999999999999999999998655421  6778899


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          574 TKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       574 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ..++.+.|++++|.+.++++.+.  .|+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~  110 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ--YPGSD  110 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence            99999999999999999999865  45544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.02  E-value=4.4e-05  Score=64.77  Aligned_cols=99  Identities=14%  Similarity=0.053  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVE--------K---------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI  526 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  526 (645)
                      .+......+.+.|++++|...|++.+..        .         .+.+...|..+..+|.+.|++++|+..+++..+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444555566666666666666665543        0         0123456777777888888888888888887773


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          527 AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       527 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                        .| +...|..+..+|...|++++|...+++..+..+.
T Consensus        93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence              44 5677778888888888888888888888775543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.99  E-value=1.3e-05  Score=63.65  Aligned_cols=85  Identities=13%  Similarity=0.023  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a  551 (645)
                      .|++++|...|++.++.+  -+.+...|..+..+|...|++++|+..+++..+.  .| +..++..+..++...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            345555555555555432  1223445555555666666666666666665552  33 355555555666666666666


Q ss_pred             HHHHHHHHHC
Q 006437          552 KRLLQDVIDA  561 (645)
Q Consensus       552 ~~~~~~~~~~  561 (645)
                      ...+++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666655543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.96  E-value=8.6e-05  Score=61.21  Aligned_cols=60  Identities=3%  Similarity=-0.048  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVIDA-------RIELDYHTS----IRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      .|..+..++.+.|++++|+..+++.++.       ++. +...|    .....++...|++++|++.|++..
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555555555555553       322 34455    566666666666666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.91  E-value=2.1e-05  Score=75.99  Aligned_cols=146  Identities=9%  Similarity=-0.075  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437          428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL  507 (645)
Q Consensus       428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (645)
                      ..+..+...+.+.|++++|...|++.+...+.  ..       .+...++.+++...+          ....|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD--DF-------MFQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH--HH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--ch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            34445555556667777777777666554322  11       011222222222211          113678888888


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChhH
Q 006437          508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF-IFKFHSSSS  585 (645)
Q Consensus       508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  585 (645)
                      .+.|++++|+..+++..+  +.| +...|..+..+|...|++++|...|+++.+..+. +...+..|... ....+..++
T Consensus       241 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998887  345 6778888888999999999999999888765443 45566666555 334566777


Q ss_pred             HHHHHHHHHH
Q 006437          586 AVNQLVEMCN  595 (645)
Q Consensus       586 A~~~~~~m~~  595 (645)
                      +.+.+++|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7888888873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.89  E-value=0.00015  Score=61.39  Aligned_cols=70  Identities=11%  Similarity=0.071  Sum_probs=58.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  533 (645)
                      +...+..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+  +.|+..
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~  131 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence            45677888889999999999999999998875 55688899999999999999999999999888  567543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.89  E-value=0.00015  Score=73.23  Aligned_cols=94  Identities=12%  Similarity=0.038  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      ...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|++..+  +.| +...+..+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~  393 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            4567778888889999999999999888765 45688888888999999999999999999887  556 4567777778


Q ss_pred             HHHhcCCHHHHHH-HHHHH
Q 006437          541 SFCKERNIKMVKR-LLQDV  558 (645)
Q Consensus       541 ~~~~~g~~~~a~~-~~~~~  558 (645)
                      ++.+.|+.+++.+ .++.|
T Consensus       394 ~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          394 CQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888887776653 34444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00041  Score=69.72  Aligned_cols=156  Identities=7%  Similarity=-0.054  Sum_probs=82.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHhHHHHHHHHHhcCCHhHHHHHHhhcCC-----CCh
Q 006437          127 RIYWRGEMYGMVLEAFDEMGRFGFTPN----------------TFARNIVMDVLFKIGRVDLGIKVLKETQL-----PNF  185 (645)
Q Consensus       127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~  185 (645)
                      +.+.+.|++++|++.|..+.+..-...                ..++..|...|...|++++|.+.+.....     ++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            334455666666666666554321110                01345666677777777777776665431     111


Q ss_pred             ----hhHHHHHHHHHhcCCcchHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---
Q 006437          186 ----LSFNIALCNLCKLNDVSNVKDVIGMMVR----KGFYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITL--GT---  251 (645)
Q Consensus       186 ----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---  251 (645)
                          ...+.+-..+...|+.+.+.++++....    .+..+. ..++..+...+...|++++|..+++.+...  +.   
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                1122222333345666666666655532    222222 335566667777777777777777665532  11   


Q ss_pred             CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          252 SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV  282 (645)
Q Consensus       252 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  282 (645)
                      .....++..++..|...|++++|..++++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            1123456666666667777777766666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.88  E-value=1.9e-05  Score=62.72  Aligned_cols=88  Identities=10%  Similarity=0.062  Sum_probs=72.5

Q ss_pred             hcCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437          509 EGGRTEEAYILYSQMKHIAV-PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA  586 (645)
Q Consensus       509 ~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  586 (645)
                      ..|++++|+..|++..+.+. .| +...+..+..+|...|++++|.+.++++++..+. ++..+..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            35889999999999998431 24 4678889999999999999999999999987766 688999999999999999999


Q ss_pred             HHHHHHHHHCC
Q 006437          587 VNQLVEMCNLG  597 (645)
Q Consensus       587 ~~~~~~m~~~g  597 (645)
                      ++.+++..+..
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999998653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.88  E-value=0.00012  Score=61.66  Aligned_cols=97  Identities=8%  Similarity=-0.027  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NAY  533 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~  533 (645)
                      ++..+...+...|++++|.+.+++..+..    .++ ....+..+...+...|++++|...+++..+.    +..+ ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            44556666666666666666666654321    000 1345666777777888888888887776532    1111 234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ++..+...+...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            677777888888888888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.85  E-value=0.00083  Score=69.50  Aligned_cols=174  Identities=9%  Similarity=0.012  Sum_probs=139.7

Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCC----------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          405 AGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARK----------IDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      ....++|++.++++....  |+ ...|+.--.++...++          ++++.+.++.+.+..++ +..+|..-.-++.
T Consensus        42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~  118 (567)
T 1dce_A           42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS  118 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            344568899999998863  44 3444444444444555          89999999999999888 8888888888888


Q ss_pred             hcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc----
Q 006437          474 EAG--RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG-RTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE----  545 (645)
Q Consensus       474 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~----  545 (645)
                      +.+  +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+.  .| |...|+.....+.+.    
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccc
Confidence            889  7799999999999986 558899999998889999 899999999999884  45 788888887777663    


Q ss_pred             ----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 006437          546 ----------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSS  585 (645)
Q Consensus       546 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  585 (645)
                                +.++++.+.+++++...+. |...|..+...+.+.++.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                      5578999999999987766 78889888888888887554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.83  E-value=0.00018  Score=70.32  Aligned_cols=90  Identities=11%  Similarity=0.032  Sum_probs=71.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML  539 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll  539 (645)
                      +...+..+..+|.+.|++++|.+.++++++.. +.+...|..+..+|...|++++|+..|++..+  +.| +...+..+.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~  348 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            45677888888999999999999999998764 44678888899999999999999999999887  456 566777777


Q ss_pred             HHHHhcCCHHHHHH
Q 006437          540 LSFCKERNIKMVKR  553 (645)
Q Consensus       540 ~~~~~~g~~~~a~~  553 (645)
                      ..+...++.+++.+
T Consensus       349 ~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          349 KVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766666543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.81  E-value=0.00064  Score=55.55  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006437          477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVK  552 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~  552 (645)
                      ++++|.+.|++..+.+   +....  |...|...+.+++|++.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3455555555555554   22222  4444444455555555555555532   44455555555554    45566666


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006437          553 RLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g  597 (645)
                      +++++..+.+   ++..+..|...|..    .++.++|.+++++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666555543   34555555555555    556666666666665554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.72  E-value=0.00043  Score=57.06  Aligned_cols=95  Identities=14%  Similarity=0.036  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-------------VVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----  526 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----  526 (645)
                      +......+.+.|++++|...|++.++..  |+             ...|+.+..++.+.|++++|+..+++.++.     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            4455666677777777777777777653  22             228889999999999999999999998872     


Q ss_pred             CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          527 AVPPN-AYTY----RVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       527 ~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      .+.|+ ...|    .....++...|++++|+..|++.++.
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            11775 5577    88899999999999999999999864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.70  E-value=0.0011  Score=54.14  Aligned_cols=110  Identities=11%  Similarity=-0.037  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 006437          442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAY  517 (645)
Q Consensus       442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  517 (645)
                      ++++|.+.|++..+.+.. ...    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .++.++|+
T Consensus        10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            344555555555554411 111    4444445555555666666655554   55555555555555    55666666


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006437          518 ILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~  562 (645)
                      .+|++..+.|   +...+..|...|..    .++.++|.+++++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666665543   34555555555555    566666666666666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.69  E-value=5.8e-05  Score=59.00  Aligned_cols=91  Identities=16%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C----HHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D----YHTS  570 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~  570 (645)
                      ...|..+...+...|++++|+..|++..+.  .| +...+..+..++...|++++|.+.++++.+..+.. +    ...+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            445555666666666666666666666552  33 45566666666666666666666666666543321 1    3344


Q ss_pred             HHHHHHHHhcCChhHHHHH
Q 006437          571 IRLTKFIFKFHSSSSAVNQ  589 (645)
Q Consensus       571 ~~l~~~~~~~g~~~~A~~~  589 (645)
                      ..+..++...|+.++|++.
T Consensus        82 ~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHhHhhhHhH
Confidence            4455555555555444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.66  E-value=0.00012  Score=70.79  Aligned_cols=150  Identities=13%  Similarity=0.067  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR  471 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  471 (645)
                      ...+..+...+.+.|++++|+..|++..+.  .|+...       +...++.+++...+.          ...+..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            445677778888999999999999998874  344331       223344444433221          2367788899


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH-HhcCCHH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSF-CKERNIK  549 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~-~~~g~~~  549 (645)
                      |.+.|++++|...+++.++.. +.+...|..+..+|...|++++|+..|++..+  +.|+ ...+..+.... ...+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875 45788999999999999999999999999987  5564 44555554442 3456677


Q ss_pred             HHHHHHHHHHHCCC
Q 006437          550 MVKRLLQDVIDARI  563 (645)
Q Consensus       550 ~a~~~~~~~~~~~~  563 (645)
                      .+..+++++....+
T Consensus       317 ~a~~~~~~~l~~~p  330 (338)
T 2if4_A          317 KQKEMYKGIFKGKD  330 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHhhCCCC
Confidence            88888888876443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.63  E-value=0.0002  Score=72.19  Aligned_cols=126  Identities=10%  Similarity=-0.028  Sum_probs=87.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHHH
Q 006437          472 LIEAGRCHKAIQLFRRAIVEK---YPL----DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----A-VPP-NAYTYRV  537 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~  537 (645)
                      +...|++++|+.++++.++..   +.|    ...+++.|...|...|++++|+.++++.++-     | -.| ...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            445677777777776665431   112    2457788888888888888888888876531     2 122 2456888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          538 MLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       538 ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      |...|..+|++++|..+++++.+     .|.. | ...+.+.+..++...|++++|..++.++++.-
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999888887763     3433 1 23455667777888888999999998887643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.54  E-value=0.00069  Score=53.23  Aligned_cols=77  Identities=4%  Similarity=0.000  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437          481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVI  559 (645)
Q Consensus       481 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  559 (645)
                      |.+.|++..+.. +.+...|..+...|...|++++|+..+++..+.  .| +...+..+..++...|++++|...+++..
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445555555443 335566666666666666777777666666652  33 45566666666666777777777666665


Q ss_pred             H
Q 006437          560 D  560 (645)
Q Consensus       560 ~  560 (645)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.54  E-value=0.00017  Score=59.30  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437          442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR----------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG  511 (645)
Q Consensus       442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  511 (645)
                      .+++|.+.++..++..+. +...|..+..++...++          +++|+..|++.++.. |.+...|..+..+|...|
T Consensus        17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence            344455555555544444 44444444444444433          345666666665553 224555666666665543


Q ss_pred             -----------CHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437          512 -----------RTEEAYILYSQMKHIAVPPNAYTYR  536 (645)
Q Consensus       512 -----------~~~~A~~~~~~m~~~~~~p~~~~~~  536 (645)
                                 ++++|++.|++..+  +.|+...|.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~  128 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL  128 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence                       56666666666665  456544443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.53  E-value=0.00044  Score=54.39  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      .|...++...+..+. +...+..+...|...|++++|...|++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            355666666666554 56677778888888888888888888877764 4456777888888888888888888888876


Q ss_pred             h
Q 006437          525 H  525 (645)
Q Consensus       525 ~  525 (645)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.51  E-value=0.00093  Score=49.58  Aligned_cols=81  Identities=14%  Similarity=0.139  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      ...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3445555555556666666666666655421 124455555566666666666666666666554332 44455555544


Q ss_pred             HHh
Q 006437          577 IFK  579 (645)
Q Consensus       577 ~~~  579 (645)
                      +.+
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.00039  Score=54.09  Aligned_cols=90  Identities=13%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------HH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-------AY  533 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~  533 (645)
                      +...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..+++..+  +.|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence            34556667777788888888888888877764 44677788888888888888888888888877  4554       44


Q ss_pred             HHHHHHHHHHhcCCHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKR  553 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~  553 (645)
                      .+..+..++...|+.+.|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            55555555555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.50  E-value=0.00024  Score=58.47  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT----------EEAYILYSQMKHIAVPP-NAYTYRVMLLS  541 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~p-~~~~~~~ll~~  541 (645)
                      .+.+.+++|.+.+++.++.. |.+...|..+..++...+++          ++|+..|++..+  +.| +..+|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence            45667889999999988876 55788888888888877664          588889998888  566 56788888888


Q ss_pred             HHhcC-----------CHHHHHHHHHHHHHCCC
Q 006437          542 FCKER-----------NIKMVKRLLQDVIDARI  563 (645)
Q Consensus       542 ~~~~g-----------~~~~a~~~~~~~~~~~~  563 (645)
                      |...|           ++++|.+.|+++++.++
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            88764           78888888888887543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.48  E-value=0.00088  Score=67.56  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-c
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRK-----G-FYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITL-----GTS-L  253 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~  253 (645)
                      +++.+..+|...|++++|..++++.++.     | -.|+ ..+++.|...|...|++++|+.++++..+.     |.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4566666666666666666666554321     2 1232 346788888888888888888888776531     321 1


Q ss_pred             -CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          254 -SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       254 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                       ...+.+.+-.++...+.+++|+.+|..+.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             233455555666667777777777777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.43  E-value=0.0014  Score=48.61  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437          462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL  540 (645)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  540 (645)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+  ..| +...+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~   85 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence            4456667777777788888888887777654 34566777777788888888888888888776  334 4556666555


Q ss_pred             HHHh
Q 006437          541 SFCK  544 (645)
Q Consensus       541 ~~~~  544 (645)
                      ++..
T Consensus        86 ~~~~   89 (91)
T 1na3_A           86 AKQK   89 (91)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.25  E-value=0.0013  Score=49.98  Aligned_cols=63  Identities=13%  Similarity=0.099  Sum_probs=35.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +...|..+...|.+.|++++|+..|++..+.  .| +...|..+..+|...|++++|.+.+++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555666666666666666665552  23 344555556666666666666666655543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.08  E-value=0.0028  Score=48.20  Aligned_cols=65  Identities=12%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437          531 NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL  596 (645)
Q Consensus       531 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  596 (645)
                      +...+..+...|...|++++|...++++++.++. +...|..+..+|.+.|++++|++.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6788999999999999999999999999987765 6778999999999999999999999998754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.75  E-value=0.023  Score=53.89  Aligned_cols=44  Identities=9%  Similarity=0.088  Sum_probs=23.0

Q ss_pred             CCCHhhHHHHHHHHHc--C---CCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437          424 TPDNYSFVGLLRGLCG--A---RKIDEAINVYQGIVMNNPAVNAHVHTAI  468 (645)
Q Consensus       424 ~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l  468 (645)
                      +.+...|...+++...  .   .+..+|..+|++.++..|. ....+..+
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~l  239 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEK  239 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            3455556665554332  1   2345677777777666554 33444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.67  E-value=0.011  Score=58.38  Aligned_cols=84  Identities=7%  Similarity=-0.001  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHHhh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHH
Q 006437          511 GRTEEAYILYSQMKH---IAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKF  576 (645)
Q Consensus       511 g~~~~A~~~~~~m~~---~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~  576 (645)
                      |++++|+.++++.++   .-+.|+    ..+++.|..+|..+|++++|..+++++++     .|.. | ...+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            556666666655432   112222    34566666666666777766666666652     2221 1 13456677777


Q ss_pred             HHhcCChhHHHHHHHHHH
Q 006437          577 IFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       577 ~~~~g~~~~A~~~~~~m~  594 (645)
                      |...|++++|..++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            777777777777777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.63  E-value=0.023  Score=53.92  Aligned_cols=139  Identities=10%  Similarity=0.045  Sum_probs=96.0

Q ss_pred             CCcHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh----cC-CHHHHHH---HHHHHh
Q 006437          459 AVNAHVHTAIVDRLI--EAG---RCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLE----GG-RTEEAYI---LYSQMK  524 (645)
Q Consensus       459 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~g-~~~~A~~---~~~~m~  524 (645)
                      ..+...|...+.+..  ..+   ...+|..+|+++++..  |+ ...|..+..+|..    .+ .......   .++...
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            346667777665543  233   4688999999999875  54 5566655555531    11 1111111   222211


Q ss_pred             hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          525 HIA-VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       525 ~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ... .+.++.+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++...  +.|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence            111 24578888888888888899999999999999976  6788888999999999999999999999885  466655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.54  E-value=0.018  Score=42.76  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=31.6

Q ss_pred             CChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          495 LDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       495 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      .|+..+..+..++...++   .++|..++++..+  ..| +......+...+...|++++|...|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344445555544443332   4555555555554  233 3444444555555555555555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.52  E-value=0.041  Score=60.18  Aligned_cols=74  Identities=16%  Similarity=0.044  Sum_probs=36.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHH
Q 006437          230 FCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIA  309 (645)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  309 (645)
                      ....|++++|.++.+.+      .+...|..+...+.+.++++.|++.|..+.+         |..+...|...++.+..
T Consensus       662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~  726 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL  726 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred             hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence            34455666655554322      2445566666666666666666666655432         23334444444554444


Q ss_pred             HHHHHHHHh
Q 006437          310 FSFLDMLES  318 (645)
Q Consensus       310 ~~~~~~~~~  318 (645)
                      ..+-+....
T Consensus       727 ~~~~~~a~~  735 (814)
T 3mkq_A          727 VTLAKDAET  735 (814)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444333333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.43  E-value=0.23  Score=38.73  Aligned_cols=139  Identities=9%  Similarity=0.004  Sum_probs=72.9

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006437          404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ  483 (645)
Q Consensus       404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  483 (645)
                      -.|..++..++..+.....   +..-|+.+|--....-+-+-..++++.+-+. ++            ...+|++.+...
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD------------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cC------------cHhhhcHHHHHH
Confidence            3566666666666665532   4444555554444444444444444433221 11            112333333333


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      -+-.+     .-+...++..+..+...|+-++-.+++..+... .+|++..+..+..||.+.|+..+|.+++.++-+.|+
T Consensus        83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            32221     124444555566666667767666666664332 356666666777777777777777777776666665


Q ss_pred             C
Q 006437          564 E  564 (645)
Q Consensus       564 ~  564 (645)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.38  E-value=0.0037  Score=47.25  Aligned_cols=53  Identities=19%  Similarity=0.233  Sum_probs=21.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          472 LIEAGRCHKAIQLFRRAIVEKYPLDVV-SYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +.+.|++++|.+.|+++.+.. +.+.. .|..+..+|...|++++|+..|++..+
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            333444444444444444332 12233 344444444444444444444444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.38  E-value=0.028  Score=55.70  Aligned_cols=61  Identities=5%  Similarity=-0.114  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +++.+..+|...|++++|..+++++++     .|.. | ...+++.|...|...|++++|..++++..
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            455555555555555555555555542     1211 1 13445556666666666666666655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.34  E-value=0.011  Score=58.56  Aligned_cols=86  Identities=10%  Similarity=-0.038  Sum_probs=61.8

Q ss_pred             cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCCC-HHHHHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVE---KYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKH-----IA-VPPN-AYTYRVMLL  540 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ll~  540 (645)
                      .|++++|..++++.++.   -+.|+    ..+++.|..+|...|++++|+.++++.++     .| -.|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45677777777666542   11222    46788888888888999999888888653     12 1232 457888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 006437          541 SFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       541 ~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .|..+|++++|..+++++.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999988764

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.33  E-value=0.00014  Score=70.07  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHh
Q 006437          120 QTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCK  197 (645)
Q Consensus       120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~  197 (645)
                      ..|..+.++....+.+.+|++.|-+      .-|+..|..++.+..+.|.+++-...+....  ..++..-+.|+-+|++
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk  128 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK  128 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence            3455555555555555554443321      1233344455555555555555555554333  2333444455555555


Q ss_pred             cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGL  245 (645)
Q Consensus       198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (645)
                      .++..+..+++.       .|+..-...+.+-|...|.++.|.-+|..
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~  169 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN  169 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence            555544433321       24444444555555555555555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.23  E-value=0.019  Score=56.95  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=66.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHH
Q 006437          470 DRLIEAGRCHKAIQLFRRAIVEK---YPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----A-VPP-NAYTY  535 (645)
Q Consensus       470 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~  535 (645)
                      ..+.+.|++++|..++++.++..   +.|+    ..+++.+..+|...|++++|+.++++..+-     | -.| ...++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            34556678888888887776542   1222    457888888899999999999988886531     2 123 24578


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          536 RVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       536 ~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      +.|...|..+|++++|..+++++.+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            8899999999999999999998863

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.21  E-value=0.045  Score=40.95  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY-TYRVMLLSFCKERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  564 (645)
                      ....+.+.|++++|+..+++..+  ..| +.. .+..+..++...|++++|.+.++++.+.++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            45567788999999999999887  345 567 8888899999999999999999999886654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.10  E-value=0.03  Score=41.55  Aligned_cols=64  Identities=11%  Similarity=0.027  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          531 NAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       531 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      |+..+..+..++...++   .++|..++++..+.++. ++.....+...+.+.|++++|++.|+++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444444444433332   45555555555554433 444555555555555555555555555553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.04  E-value=0.035  Score=45.07  Aligned_cols=82  Identities=5%  Similarity=0.020  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006437          478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHIAVPP--NAYTYRVMLLSFCKERNIKMVK  552 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~  552 (645)
                      +..+.+.|.+..+.+ +++..+.-.+..++++.+   +.++++.++++..+.+ .|  +...+..+.-+|.+.|++++|+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            444555555555444 245555555556666655   4446666666655532 23  2444555555556666666666


Q ss_pred             HHHHHHHHC
Q 006437          553 RLLQDVIDA  561 (645)
Q Consensus       553 ~~~~~~~~~  561 (645)
                      ++++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            666666553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.03  E-value=0.047  Score=44.27  Aligned_cols=88  Identities=10%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437          513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER---NIKMVKRLLQDVIDAR-IELDYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      ...+.+-|.+..+.| .++..+...+.+++++.+   +.+++..+++.+.+.+ +.-....+-.|.-++.+.|++++|.+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            455666666666655 467788888888888877   6668888888887755 21135566677777888888888888


Q ss_pred             HHHHHHHCCCCCChh
Q 006437          589 QLVEMCNLGLIPDEM  603 (645)
Q Consensus       589 ~~~~m~~~g~~p~~~  603 (645)
                      .++.+.+  +.|+..
T Consensus        93 y~~~lL~--ieP~n~  105 (152)
T 1pc2_A           93 YVRGLLQ--TEPQNN  105 (152)
T ss_dssp             HHHHHHH--HCTTCH
T ss_pred             HHHHHHh--cCCCCH
Confidence            8888884  677665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.00  E-value=0.097  Score=57.19  Aligned_cols=99  Identities=14%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             HHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006437          403 CKAGFPNQAVK-LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKA  481 (645)
Q Consensus       403 ~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  481 (645)
                      ...+++++|.+ ++..     + |+......++..+.+.|..+.|.++.+.         .   ..-.......|+++.|
T Consensus       610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A  671 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA  671 (814)
T ss_dssp             HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence            45677777765 4421     1 1012235566666677777777665421         1   1113344567777777


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      .++.+.+      .+...|..+...+.+.|+++.|++.|.++.+
T Consensus       672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            7765432      3567777788888888888888887777653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.80  E-value=0.0023  Score=61.94  Aligned_cols=212  Identities=11%  Similarity=0.059  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437           82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM  161 (645)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  161 (645)
                      |+..|..++.+..+ .|.+++.+..+...++..-.|.  .=+.|+-+|++.+++.+-.+...       .|+..-...+.
T Consensus        82 Dps~y~eVi~~A~~-~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG  151 (624)
T 3lvg_A           82 DPSSYMEVVQAANT-SGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG  151 (624)
T ss_dssp             CCCSSSHHHHHTTT-SSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred             ChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence            44456666666666 6677776666665555433332  23355666666666544322211       35555555666


Q ss_pred             HHHHhcCCHhHHHHHHhhcC------------------------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 006437          162 DVLFKIGRVDLGIKVLKETQ------------------------LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFY  217 (645)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  217 (645)
                      +-|...|.++.|.-+|..+.                        ..++.+|..+-.+|...+.+.-|.-.--.++-.   
T Consensus       152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---  228 (624)
T 3lvg_A          152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---  228 (624)
T ss_dssp             HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred             HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence            66666666666666665432                        234456666666666666655543332222211   


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC------CCh
Q 006437          218 PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ-NGCS------PNV  290 (645)
Q Consensus       218 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~------~~~  290 (645)
                        ..-...++..|-..|.+++...+++.-.... ..-...|+-|.-.|++- ++++..+.++..-. -+++      -..
T Consensus       229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a  304 (624)
T 3lvg_A          229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA  304 (624)
T ss_dssp             --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred             --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence              1112234455556666666666666554321 23456677777777664 33333333222111 0111      134


Q ss_pred             hchHHHHHHHHhcCChhHHH
Q 006437          291 VTYTSLIKGFMEAKMFSIAF  310 (645)
Q Consensus       291 ~~~~~li~~~~~~~~~~~a~  310 (645)
                      ..|..++-.|++..+++.|.
T Consensus       305 hLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          305 HLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             TCHHHHHHHHHHHTCHHHHH
T ss_pred             hhHHHHHHHHhcchhHHHHH
Confidence            55667777777777777554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.79  E-value=0.059  Score=48.92  Aligned_cols=84  Identities=7%  Similarity=0.053  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CChh
Q 006437          514 EEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKE-----RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF-HSSS  584 (645)
Q Consensus       514 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~  584 (645)
                      ..|..++++..+  +.|+   ...|..+...|...     |+.++|.+.|++.++.++.-+..++..+.+.+++. |+.+
T Consensus       180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            344444444444  3343   33444444444442     55555555555555543322244444455555442 5555


Q ss_pred             HHHHHHHHHHHCCCC
Q 006437          585 SAVNQLVEMCNLGLI  599 (645)
Q Consensus       585 ~A~~~~~~m~~~g~~  599 (645)
                      +|.+.+++..+....
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            555555555544333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.43  Score=39.75  Aligned_cols=127  Identities=9%  Similarity=0.045  Sum_probs=77.0

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      ....|+++.|.++.+.+      .+...|..|.+.....|+++-|.+.|.+..      |   |..+.-.|.-.|+.+.-
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHHHH
Confidence            34567888887776654      266777888888888888888887777653      2   45555566667777666


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          517 YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       517 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      .++-+.....|      -++.....+...|+++++.+++.+.   |--|.      -+-.....|-.+.|.++.+++
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e------A~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL------AYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence            66655555443      1334445556678888887777543   22111      111222345666666776655

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.74  Score=38.36  Aligned_cols=25  Identities=16%  Similarity=0.069  Sum_probs=11.2

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437          220 VRMFEILLNCFCKMGRIAEAYQLLG  244 (645)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~  244 (645)
                      ...|..|.+.....|+++-|++.|.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~   58 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQ   58 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3344444444444444444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.14  E-value=0.11  Score=39.35  Aligned_cols=61  Identities=8%  Similarity=0.013  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEK------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH  525 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  525 (645)
                      +-.|...+.+.|+++.|...|+.+.+..      -.+....+..+..++.+.|++++|...++++.+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3344455555555555555555444320      011233444555555555555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.08  E-value=0.2  Score=45.56  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhc-C
Q 006437          478 CHKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEG-----GRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKE-R  546 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~-g  546 (645)
                      ...|...+++.++..  |+   -..|..+...|.+.     |+.++|.+.|++.++  +.|+  ..++......++.. |
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence            344555555555543  33   34566666666663     666777777776666  4552  55565666666653 6


Q ss_pred             CHHHHHHHHHHHHHCCCC
Q 006437          547 NIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~  564 (645)
                      +.+++.+.+++.++..+.
T Consensus       255 d~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGG
T ss_pred             CHHHHHHHHHHHHcCCCC
Confidence            677777777776666555

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.01  E-value=0.21  Score=39.97  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437          546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE  602 (645)
Q Consensus       546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~  602 (645)
                      +|.++|.++|+.+++..-+. ...|......-.+.|+...|.+++.+....+.+|..
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            55666666666665432222 555555555566666666666666666644444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.98  E-value=0.98  Score=35.28  Aligned_cols=140  Identities=11%  Similarity=0.094  Sum_probs=97.7

Q ss_pred             HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006437          438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAY  517 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  517 (645)
                      .-.|.+++..++..+.....   +..-+|-++--....-+-+-..++++.+-+.   -|..          ..|+.....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence            34688888888888877654   3444555555455555555555555544322   2322          345555555


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      ..+-.+     ..++..++..++....+|+-+.-.+++..+.. +-.|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus        82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            555444     23556777788889999999999999988654 345689999999999999999999999999999998


Q ss_pred             CC
Q 006437          598 LI  599 (645)
Q Consensus       598 ~~  599 (645)
                      ++
T Consensus       156 ~k  157 (172)
T 1wy6_A          156 EK  157 (172)
T ss_dssp             CH
T ss_pred             hH
Confidence            75

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.97  E-value=0.39  Score=38.39  Aligned_cols=113  Identities=16%  Similarity=0.067  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHhhCC
Q 006437          461 NAHVHTAIVDRLIEAGRC------HKAIQLFRRAIVEKYPLDVV-SYTVAIRG------LLEGGRTEEAYILYSQMKHIA  527 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~m~~~~  527 (645)
                      |..+|-..+...-+.|+.      ++..++|+++... +||+.. .|...+..      +...++.++|.++|+.+.+.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            445555555555555666      6777777777654 455421 22222211      224478999999999997653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      -.- ...|.....--.++|+++.|.+++...+..+.+ +.......+.-
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n  137 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN  137 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence            222 666666666668899999999999999998877 44455444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.94  E-value=0.24  Score=37.46  Aligned_cols=66  Identities=3%  Similarity=-0.074  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIA------VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      .-+-.|...+.+.|+++.|...++...+.-      -.+...++..+..++.+.|+++.|...++++.+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            334455666666666666666666654320      112345566666666666666666666666665433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.53  E-value=0.38  Score=37.44  Aligned_cols=86  Identities=5%  Similarity=0.014  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006437          476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE---AYILYSQMKHIAVPP--NAYTYRVMLLSFCKERNIKM  550 (645)
Q Consensus       476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~  550 (645)
                      ..+..+.+-|.+....| .++..+--.+..++++..+..+   ++.++++....+ .|  .......|.-++.+.|++++
T Consensus        15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            33445555555554444 2555665666666666665554   677777766543 23  33445556666777777777


Q ss_pred             HHHHHHHHHHCCC
Q 006437          551 VKRLLQDVIDARI  563 (645)
Q Consensus       551 a~~~~~~~~~~~~  563 (645)
                      |++.++.+++..+
T Consensus        93 A~~~~~~lL~~eP  105 (126)
T 1nzn_A           93 ALKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCC
Confidence            7777777776443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.84  E-value=0.28  Score=38.20  Aligned_cols=89  Identities=10%  Similarity=0.003  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHH
Q 006437          512 RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM---VKRLLQDVIDAR-IELDYHTSIRLTKFIFKFHSSSSAV  587 (645)
Q Consensus       512 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~  587 (645)
                      ....+.+-|.+....| .|+..+-..+.+++.+..+...   ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.
T Consensus        16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            4455666666665555 4888888888999988887666   888888887764 2124556667778899999999999


Q ss_pred             HHHHHHHHCCCCCChh
Q 006437          588 NQLVEMCNLGLIPDEM  603 (645)
Q Consensus       588 ~~~~~m~~~g~~p~~~  603 (645)
                      +.++.+++  +.|+..
T Consensus        95 ~~~~~lL~--~eP~n~  108 (126)
T 1nzn_A           95 KYVRGLLQ--TEPQNN  108 (126)
T ss_dssp             HHHHHHHH--HCTTCH
T ss_pred             HHHHHHHH--hCCCCH
Confidence            99999995  677665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.43  E-value=10  Score=40.98  Aligned_cols=153  Identities=10%  Similarity=0.054  Sum_probs=83.9

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHhcCC
Q 006437          402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR--GLCGARKIDEAINVYQGIVMNNPAVNAHVHT--AIVDRLIEAGR  477 (645)
Q Consensus       402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~  477 (645)
                      ++-.|+.+....++..+.+..   +......+..  ++...|+.+.+..+.+.+.... .|....-.  ++.-+|+..|+
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence            445667676777777666531   2233333333  3446788888888877776542 22222222  34445667788


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 006437          478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI-KMVKRLLQ  556 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~  556 (645)
                      .....+++..+.+.. ..++.-.-.+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|+. .++...+.
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            877777888877642 2233333333334445666666677776665543 34333333333334444443 56777777


Q ss_pred             HHHH
Q 006437          557 DVID  560 (645)
Q Consensus       557 ~~~~  560 (645)
                      .+..
T Consensus       654 ~L~~  657 (963)
T 4ady_A          654 PLTK  657 (963)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            7754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.11  E-value=11  Score=40.62  Aligned_cols=204  Identities=10%  Similarity=0.044  Sum_probs=111.8

Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH---HHHHHHHcCCCHHH
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYN--ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV---GLLRGLCGARKIDE  445 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~  445 (645)
                      .-.|+.+....++.......+.....  .+.-++...|+.+.+..+++.+.... .|.. -|.   .+.-+|+..|+...
T Consensus       501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~a  578 (963)
T 4ady_A          501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSA  578 (963)
T ss_dssp             TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHH
T ss_pred             cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHH
Confidence            34455555555552211111222223  33334457799999999988887642 2222 232   23446778899988


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 006437          446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT-EEAYILYSQMK  524 (645)
Q Consensus       446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~  524 (645)
                      ..+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+.---.+.-+....|+. .+|+.++..+.
T Consensus       579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            888999887653 2233333334444555677777777777666544 44554444555555555554 67888888887


Q ss_pred             hCCCCCCHHHHHHHHHHHHhc--C-------CHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcC
Q 006437          525 HIAVPPNAYTYRVMLLSFCKE--R-------NIKMVKRLLQDVIDA-RIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       525 ~~~~~p~~~~~~~ll~~~~~~--g-------~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g  581 (645)
                      .   .+|..+-..-+.++...  |       ++...++.+...... ...++...-..+..+....|
T Consensus       657 ~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG  720 (963)
T 4ady_A          657 K---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG  720 (963)
T ss_dssp             T---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred             c---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence            4   45655544444444332  2       233333333333332 22344555566666666655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.22  E-value=2.9  Score=32.70  Aligned_cols=73  Identities=11%  Similarity=0.010  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          529 PPNAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       529 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .|+..|-..+.+++.+..+   ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.  .+.|+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~  112 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK  112 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence            5666666666666665553   34566777766665533245555666667777777777777777777  4566655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.69  E-value=2.7  Score=40.76  Aligned_cols=56  Identities=21%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      .++..+...|+++++...+..+.... |.+...|..+|.++.+.|+..+|++.|+++
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444445555555555555544432 334445555555555555555555555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.69  E-value=2.6  Score=44.46  Aligned_cols=51  Identities=8%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      |...|+++.|+++-++....-+. +..+|..|..+|...|+++.|+-.+..|
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44556666666666666554333 5666666666666666666666666655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.35  E-value=1.2  Score=43.40  Aligned_cols=76  Identities=9%  Similarity=0.072  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCcCHHHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVI-----DARIELDYHTSIRL  573 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l  573 (645)
                      ...++.++...|++++|+..+..+..  ..| +...+..++.++.+.|+..+|.+.|+.+.     +.|++|.+.+-...
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            45567788889999999999999887  445 88899999999999999999999999875     46999988776544


Q ss_pred             HHHH
Q 006437          574 TKFI  577 (645)
Q Consensus       574 ~~~~  577 (645)
                      -..+
T Consensus       252 ~~il  255 (388)
T 2ff4_A          252 ERIL  255 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.92  E-value=5.4  Score=31.63  Aligned_cols=73  Identities=11%  Similarity=0.018  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          529 PPNAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       529 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      .|+..+-..+.+++.+..+   ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++  +.|+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence            4566665566666665543   345666666666544332344555566667777777777777777763  556554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.79  E-value=2.3  Score=31.20  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      +..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444555555555556666666666666666666666666665553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.73  E-value=8.6  Score=43.50  Aligned_cols=130  Identities=13%  Similarity=0.078  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006437          464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML  539 (645)
Q Consensus       464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  539 (645)
                      -|.-++..+.+.+.++.+.++-+.+++...+.+    ...|..+..++...|++++|...+-.+....  --...+..|+
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence            456677788888888888888777765431212    1257888888889999999988888877643  3356677777


Q ss_pred             HHHHhcCCHH------------HHHHHHHHHHH-C-CCCcCHHHHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 006437          540 LSFCKERNIK------------MVKRLLQDVID-A-RIELDYHTSIRLTKFIFKFHSSSSAVN-QLVEMCN  595 (645)
Q Consensus       540 ~~~~~~g~~~------------~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~  595 (645)
                      ...+..|..+            +..+++..--+ . .+...+..|..|...+...|++..|-+ +|+.+.+
T Consensus       979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            7666655444            34444433221 1 223234567888888888888887765 4666543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.67  E-value=2.2  Score=44.99  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=25.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      ...|+++-|+++.++.+..- |-+..+|..|..+|...|+++.|+-.+..+
T Consensus       348 l~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          348 LNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34455555555555555432 223455555555555555555555554443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.91  E-value=27  Score=36.05  Aligned_cols=346  Identities=10%  Similarity=0.021  Sum_probs=177.6

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 006437           73 CAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTP  152 (645)
Q Consensus        73 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  152 (645)
                      +...++.+.....-+.-+..+++ .+++......+..     .+.+...-.....+....|+..+|......+-..| ..
T Consensus        62 l~~~~~~p~~~~Lr~~~l~~l~~-~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~  134 (618)
T 1qsa_A           62 VRANPTLPPARTLQSRFVNELAR-REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS  134 (618)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred             HHHCCCChhHHHHHHHHHHHHHh-CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence            33444432333444555666776 6777766654332     13355555556666777777766666666655444 33


Q ss_pred             CHHhHHHHHHHHHhcC------------------CHhHHHHHHhhcCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 006437          153 NTFARNIVMDVLFKIG------------------RVDLGIKVLKETQLPNFL-SFNIALCNLCKLNDVSNVKDVIGMMVR  213 (645)
Q Consensus       153 ~~~~~~~ll~~~~~~g------------------~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~  213 (645)
                      .+..+..++..+.+.|                  +...|..+...+. ++.. ....++...   .+...+......   
T Consensus       135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~-~~~~~~a~~~~al~---~~p~~~~~~~~~---  207 (618)
T 1qsa_A          135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP-ADYQTIASAIISLA---NNPNTVLTFART---  207 (618)
T ss_dssp             CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-GGGHHHHHHHHHHH---HCGGGHHHHHHH---
T ss_pred             CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC-HHHHHHHHHHHHHH---hChHhHHHHHhc---
Confidence            3445555555555444                  3444444433332 2211 112222211   223333332221   


Q ss_pred             CCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006437          214 KGFYPNVR---MFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA----WTVLIDGFRRLRRLDMAGYLWEKMVQNGC  286 (645)
Q Consensus       214 ~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~  286 (645)
                      .  .++..   .+...+.-+.+. +.+.|...+....+.. ..+...    +..+.......+...++...+....... 
T Consensus       208 ~--~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-  282 (618)
T 1qsa_A          208 T--GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-  282 (618)
T ss_dssp             S--CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred             c--CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-
Confidence            1  22222   222223333343 7799999998886543 223322    2233333344453456666666654432 


Q ss_pred             CCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006437          287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSL  366 (645)
Q Consensus       287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  366 (645)
                       .+.....-.+....+.|+++.|...|+.|...... .....--+.+++...|+.++|..+|..+...      .+|-.+
T Consensus       283 -~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~  354 (618)
T 1qsa_A          283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPM  354 (618)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHH
T ss_pred             -CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHH
Confidence             34433444555566789999999999998764222 2333445677888899999999999998752      234333


Q ss_pred             HHHHHhcCCcccHHHHHhcCCC-CCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006437          367 LSTVCLSGRFSLLPKLVCGLEV-EADLVV---YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK  442 (645)
Q Consensus       367 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  442 (645)
                      +.+ .+.|..-.. .. ..... ......   --..+..+...|....|...|..+.+. .  +......+.......|.
T Consensus       355 lAa-~~Lg~~~~~-~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~  428 (618)
T 1qsa_A          355 VAA-QRIGEEYEL-KI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQW  428 (618)
T ss_dssp             HHH-HHTTCCCCC-CC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHcCCCCCC-CC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCC
Confidence            322 223321100 00 00000 001111   112345577889999999988887764 2  33333344444556777


Q ss_pred             HHHHHHHHH
Q 006437          443 IDEAINVYQ  451 (645)
Q Consensus       443 ~~~a~~~~~  451 (645)
                      .+.+.....
T Consensus       429 ~~~~v~~~~  437 (618)
T 1qsa_A          429 WDLSVQATI  437 (618)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            776665443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.87  E-value=5.5  Score=29.23  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437           99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV  163 (645)
Q Consensus        99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~  163 (645)
                      +.-++.+-+..+-...+.|++....+.+++|.+.+++..|+++++-+. +.|  ....+|..+++-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence            455666667777777778888888888888888888888888888776 333  234456666643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.12  E-value=24  Score=34.71  Aligned_cols=95  Identities=9%  Similarity=0.023  Sum_probs=61.1

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcC--HHh
Q 006437          189 NIALCNLCKLNDVSNVKDVIGMMVRK--GFYPN---VRMFEILLNCFCKMGRIAEAYQLLGLMIT----LGTSLS--VNA  257 (645)
Q Consensus       189 ~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~  257 (645)
                      ..|...+...|++.+|.+++..+...  |....   ...+...++.|...+++..|..++..+..    ....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            45666677778888888888777432  21111   23566677788888888888888877642    122222  235


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          258 WTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       258 ~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      |..++..+...+++.+|.+.|.+...
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            66667777778888887777766653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.98  E-value=25  Score=34.66  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      .|...|...|++.+|..++..+...-...+     +..+..-++.|...+++.+|..++.++
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki  203 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI  203 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344455555555555555554432210111     223334444444555555555555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.16  E-value=9.6  Score=29.77  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .+-.|.-++.+.|++++|+++.+.+.+
T Consensus        80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           80 CLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            333444444444444444444444444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.24  E-value=14  Score=29.30  Aligned_cols=70  Identities=11%  Similarity=0.089  Sum_probs=46.3

Q ss_pred             CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          494 PLDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       494 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      .|+..+--.+..++++..+   ..+++.+++++...+-.-....+..|.-++.+.|++++|+++.+.+.+..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            3555555566667776654   446777787777633111345566677788888888888888888887544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.17  E-value=34  Score=38.61  Aligned_cols=52  Identities=6%  Similarity=0.047  Sum_probs=31.1

Q ss_pred             HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 006437          159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMM  211 (645)
Q Consensus       159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  211 (645)
                      .++..+.+.+..+.|.++..-. +.+....-.+..++...|++++|.+.|.+.
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4555666667776666654333 334444344555666777777777777654

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.82  E-value=13  Score=31.59  Aligned_cols=56  Identities=11%  Similarity=0.014  Sum_probs=39.2

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437          510 GGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL  565 (645)
Q Consensus       510 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  565 (645)
                      .++..++..+|..|...|+--. +.-|......+...|++++|.++++.-++.+-+|
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            3446677777777777766553 5556666777777778888887777777776665

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.07  E-value=12  Score=27.22  Aligned_cols=79  Identities=14%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437          133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV  212 (645)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  212 (645)
                      ...++|..+-+.+...+.  ...+--.-+..+.+.|++++|..+.+....||...|-++-..  +.|--+++...+..+.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence            355777777777776542  222222333456678999999999998888888888777653  6677777777777776


Q ss_pred             HCC
Q 006437          213 RKG  215 (645)
Q Consensus       213 ~~~  215 (645)
                      .+|
T Consensus        96 ~sg   98 (115)
T 2uwj_G           96 GSS   98 (115)
T ss_dssp             TCS
T ss_pred             hCC
Confidence            665

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.93  E-value=8  Score=30.13  Aligned_cols=45  Identities=11%  Similarity=0.075  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      ..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-++.
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444445555555555555555555555555555555543

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.64  E-value=13  Score=27.14  Aligned_cols=79  Identities=10%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437          133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV  212 (645)
Q Consensus       133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  212 (645)
                      ...++|..+-+.+...+.  ...+--.-+..+.+.|++++|..+.+....||...|-++-..  +.|--+++...+..+.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence            355777777777776542  222222333456678999999999988888888888777653  5677777777776666


Q ss_pred             HCC
Q 006437          213 RKG  215 (645)
Q Consensus       213 ~~~  215 (645)
                      ..|
T Consensus        97 ~sg   99 (116)
T 2p58_C           97 RSQ   99 (116)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            655

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.35  E-value=34  Score=31.62  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             HHHcCChHHHHH----HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHH
Q 006437          402 FCKAGFPNQAVK----LYNTMLDKGFTPDNYSFVGLLRGLCGARKID-EAINVYQGIV----MNN--PAVNAHVHTAIVD  470 (645)
Q Consensus       402 ~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~  470 (645)
                      +.+.|+...|-+    +++-..+.+++++......++..+..-..-+ .=.++++.++    +.+  ..-++..+..+..
T Consensus        63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~  142 (312)
T 2wpv_A           63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS  142 (312)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred             HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence            445566554444    3444455677777777777776665422111 1122223222    222  2347788899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437          471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG---GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN  547 (645)
Q Consensus       471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  547 (645)
                      .|.+.|++.+|...|-.    +-.-+...+..++.-+...   |...++--.              .... +--|...|+
T Consensus       143 ~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~Ra-VL~yL~l~n  203 (312)
T 2wpv_A          143 KLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRL-VFNYLFISN  203 (312)
T ss_dssp             HHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHH-HHHHHHTTB
T ss_pred             HHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHH-HHHHHHhcC
Confidence            99999999998876641    1001344444444333332   333322111              1111 122345678


Q ss_pred             HHHHHHHHHHHH
Q 006437          548 IKMVKRLLQDVI  559 (645)
Q Consensus       548 ~~~a~~~~~~~~  559 (645)
                      ...|..+++...
T Consensus       204 ~~~A~~~~~~f~  215 (312)
T 2wpv_A          204 ISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	645
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 38/247 (15%)

Query: 254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFL 313
              AW+ L   F     + +A + +EK V    +  +  Y +L     EA++F  A +  
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226

Query: 314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373
               S      +V  N L     + G  D A+D Y   +EL+  P               
Sbjct: 227 LRALSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ--PHFPD----------- 272

Query: 374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGL 433
                                Y  L +   + G   +A   YNT L    T  +     L
Sbjct: 273 --------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-L 311

Query: 434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY 493
                    I+EA+ +Y+  +   P   A  H+ +   L + G+  +A+  ++ AI    
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAI-RIS 369

Query: 494 PLDVVSY 500
           P    +Y
Sbjct: 370 PTFADAY 376

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	645
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.05
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.01
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.99
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.92
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.9
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.9
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.87
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.76
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.66
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.78
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.63
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.23
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.81
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.22
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.04
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.06
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.1
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	82.77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-20  Score=181.92  Aligned_cols=320  Identities=15%  Similarity=0.077  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHH
Q 006437          221 RMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF  300 (645)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  300 (645)
                      .++..+...|...|++++|...+....+.... +..............+....+........... ..............
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  145 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLL  145 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            34444444555555555555555544443211 22222233333333333333333333333221 12222333333344


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHH
Q 006437          301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLP  380 (645)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  380 (645)
                      ...+....+...+....... +-+...+..+...+...|+.+.|...+++..+..                         
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------------  199 (388)
T d1w3ba_         146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------------------------  199 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred             cccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------------------------
Confidence            44445555555444444331 1133444445555555666666666665554421                         


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 006437          381 KLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV  460 (645)
Q Consensus       381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  460 (645)
                              +.+...|..+...+...|++++|+..++.....+ +.+...+..+...+.+.|++++|...+++.++..+. 
T Consensus       200 --------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-  269 (388)
T d1w3ba_         200 --------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-  269 (388)
T ss_dssp             --------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-
T ss_pred             --------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence                    1134455666666777777777777777776653 334556666777777778888888888777776655 


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437          461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML  539 (645)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll  539 (645)
                      +..++..+..++...|++++|.+.++...... +.+...+..+...+.+.|++++|+..+++..+  +.| +..++..+.
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la  346 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLA  346 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            56677777788888888888888887776653 55667777777888888888888888888776  455 466777778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437          540 LSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHS  582 (645)
Q Consensus       540 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  582 (645)
                      .+|...|++++|.+.++++++..+. ++..|..|+.+|.+.|+
T Consensus       347 ~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         347 SVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            8888888888888888887775544 57777777777776664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-19  Score=174.84  Aligned_cols=377  Identities=18%  Similarity=0.117  Sum_probs=200.9

Q ss_pred             HHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHh
Q 006437           92 VVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVD  171 (645)
Q Consensus        92 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  171 (645)
                      .+.+ .|++++|...++++.+.. +-+...+..+...|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus         8 ~~~~-~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           8 REYQ-AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence            3444 567777777777666553 3355666666666667777777777777666553 334566666666666666666


Q ss_pred             HHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          172 LGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT  248 (645)
Q Consensus       172 ~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (645)
                      +|+..++...   +.+...+..........+....+........... .................+....+...+.....
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence            6666666543   2233333333444444455555544444443332 12233333344444555555555555555554


Q ss_pred             cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 006437          249 LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFH  328 (645)
Q Consensus       249 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  328 (645)
                      .. +.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|...++.....+. .+...+
T Consensus       164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  240 (388)
T d1w3ba_         164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH  240 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred             cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHH
Confidence            32 2234455555566666666666666666555432 12334455555555555555555555555544322 233344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 006437          329 NVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFP  408 (645)
Q Consensus       329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~  408 (645)
                      ..+...+.+.|++++|...|++..+                                                       
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~-------------------------------------------------------  265 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIE-------------------------------------------------------  265 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------------------
Confidence            4444445555555555555554443                                                       


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          409 NQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRA  488 (645)
Q Consensus       409 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  488 (645)
                                  .. +-+...+..+...+...|++++|.+.++......+. +...+..+..++.+.|++++|.+.|++.
T Consensus       266 ------------~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a  331 (388)
T d1w3ba_         266 ------------LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             ------------TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ------------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence                        21 112333444444444445555555555444444332 4444555555566666666666666665


Q ss_pred             HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437          489 IVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN  547 (645)
Q Consensus       489 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  547 (645)
                      ++.. |-+..+|..+..+|.+.|++++|+..|++..+  +.| +...|..+..+|.+.||
T Consensus       332 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         332 LEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            5543 23455566666666666666666666666665  445 35566666666666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.3e-12  Score=119.34  Aligned_cols=270  Identities=14%  Similarity=0.068  Sum_probs=166.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437          261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS  340 (645)
Q Consensus       261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  340 (645)
                      ....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|++..+... -+...+..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence            3444556666666666666666542 22345566666666666666666666666555321 134455555556666666


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006437          341 YDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD  420 (645)
Q Consensus       341 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  420 (645)
                      +++|.+.++.+....  |+...                        ......       .          . .       
T Consensus       103 ~~~A~~~~~~~~~~~--~~~~~------------------------~~~~~~-------~----------~-~-------  131 (323)
T d1fcha_         103 QRQACEILRDWLRYT--PAYAH------------------------LVTPAE-------E----------G-A-------  131 (323)
T ss_dssp             HHHHHHHHHHHHHTS--TTTGG------------------------GCC-------------------------------
T ss_pred             ccccccchhhHHHhc--cchHH------------------------HHHhhh-------h----------h-h-------
Confidence            666666666555421  11000                        000000       0          0 0       


Q ss_pred             CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 006437          421 KGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVS  499 (645)
Q Consensus       421 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  499 (645)
                        ...+.......+..+...+...+|...+...+...+. .+..++..+...+...|++++|...+++..... +-+...
T Consensus       132 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  208 (323)
T d1fcha_         132 --GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL  208 (323)
T ss_dssp             -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             --hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccc
Confidence              0000000111112233345567777788777766543 356777888888999999999999999988764 446788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------cCHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE----------LDYH  568 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~  568 (645)
                      |..+...|.+.|++++|++.|++..+  +.| +..++..+..+|.+.|++++|.+.|+++++..+.          ....
T Consensus       209 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  286 (323)
T d1fcha_         209 WNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN  286 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred             hhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHH
Confidence            88999999999999999999999887  456 5778888999999999999999999988763221          1234


Q ss_pred             HHHHHHHHHHhcCChhHHHH
Q 006437          569 TSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       569 ~~~~l~~~~~~~g~~~~A~~  588 (645)
                      .|..+..++...|+.+.+..
T Consensus       287 ~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         287 IWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            56666677777777765443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.4e-12  Score=118.55  Aligned_cols=269  Identities=12%  Similarity=0.046  Sum_probs=193.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhc
Q 006437          224 EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEA  303 (645)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  303 (645)
                      -.....+.+.|++++|...|+.+.+..+ -+...|..+..+|...|++++|...|++..+.. +-+...|..+...|...
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            3467778899999999999999998753 367899999999999999999999999988753 33567888889999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437          304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV  383 (645)
Q Consensus       304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  383 (645)
                      |++++|.+.++......  |+.................                                          
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------------------------------  136 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGL------------------------------------------  136 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------------------------
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhhhccc------------------------------------------
Confidence            99999999999988752  3322111000000000000                                          


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 006437          384 CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG-FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA  462 (645)
Q Consensus       384 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  462 (645)
                               ......+..+...+.+.+|...+.+..+.. -.++...+..+...+...|++++|...++......+. +.
T Consensus       137 ---------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~  206 (323)
T d1fcha_         137 ---------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DY  206 (323)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             ---------ccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cc
Confidence                     000001112233455667777777766532 2334566777888888999999999999999888766 67


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-----------  531 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------  531 (645)
                      ..+..+..+|.+.|++++|.+.|+++++.. +-+..+|..+..+|.+.|++++|+..|++..+  +.|+           
T Consensus       207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~  283 (323)
T d1fcha_         207 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAM  283 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCC
T ss_pred             cchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCcChhhhhhhHHH
Confidence            788889999999999999999999998764 44678899999999999999999999999876  2332           


Q ss_pred             -HHHHHHHHHHHHhcCCHHHH
Q 006437          532 -AYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       532 -~~~~~~ll~~~~~~g~~~~a  551 (645)
                       ...|..+-.++...|+.+.+
T Consensus       284 ~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         284 SENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHH
Confidence             23445555555555555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.5e-09  Score=97.37  Aligned_cols=204  Identities=10%  Similarity=0.025  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437          392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGAR-KIDEAINVYQGIVMNNPAVNAHVHTAIV  469 (645)
Q Consensus       392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  469 (645)
                      ...|+.+-..+.+.+.+++|+++++++++.  .|+ ...|+....++...| ++++|...++..++..++ +..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence            346666777788889999999999999885  344 456666666777765 589999999999888877 788888889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC-
Q 006437          470 DRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN-  547 (645)
Q Consensus       470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~-  547 (645)
                      ..+.+.|++++|++.++++++.. +.+...|..+...+.+.|++++|++.++++.+  +.| +...|+.+...+.+.+. 
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999998875 55788999999999999999999999999988  456 67778877777666554 


Q ss_pred             -----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          548 -----IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       548 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                           +++|.+.+.++++..+. +...|..+...+.. ...+++.+.++...+....+...
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~  255 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSP  255 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCH
T ss_pred             chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCH
Confidence                 57888888888886655 77778777666544 44677888888877544444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.7e-08  Score=94.51  Aligned_cols=216  Identities=10%  Similarity=0.045  Sum_probs=166.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~  405 (645)
                      ..|+.+...+.+.+..++|+++++++++..  |+                               +...|+....++...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~-------------------------------~~~a~~~r~~~l~~l   90 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AA-------------------------------NYTVWHFRRVLLKSL   90 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CC-------------------------------ChHHHHHHHHHHHHh
Confidence            345566667788889999999999998842  22                               455677777777776


Q ss_pred             C-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          406 G-FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       406 g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      | ++++|+..++...+.. +-+..+|..+...+.+.|++++|...++.+++..+. +...|..+..++.+.|++++|.+.
T Consensus        91 ~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1          91 QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHH
Confidence            6 4899999999988763 235778888888888999999999999999998877 788899999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGR------TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQD  557 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  557 (645)
                      ++++++.+ +.+...|+.+...+.+.+.      +++|++.+.+..+  +.| +...|..+...+.. ...+++.+.++.
T Consensus       169 ~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~  244 (315)
T d2h6fa1         169 VDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQD-RGLSKYPNLLNQ  244 (315)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHH
T ss_pred             HHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHh-cChHHHHHHHHH
Confidence            99999876 4578888888777776654      6789999998887  456 67777777666544 446778888888


Q ss_pred             HHHCCCCc-CHHHHHHHHHHHHhc
Q 006437          558 VIDARIEL-DYHTSIRLTKFIFKF  580 (645)
Q Consensus       558 ~~~~~~~~-~~~~~~~l~~~~~~~  580 (645)
                      ..+..+.+ +...+..++..|...
T Consensus       245 ~~~l~~~~~~~~~~~~l~~~y~~~  268 (315)
T d2h6fa1         245 LLDLQPSHSSPYLIAFLVDIYEDM  268 (315)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcCCHHHHHHHHHHHHHH
Confidence            87654443 466677777777543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.9e-08  Score=91.20  Aligned_cols=188  Identities=9%  Similarity=0.021  Sum_probs=151.7

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437          406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLF  485 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  485 (645)
                      +..++|..+|++..+...+-+...+...+......|+++.|..+++.++...+.....+|...+....+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888999888754444556677778888899999999999999998776656678899999999999999999999


Q ss_pred             HHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 006437          486 RRAIVEKYPLDVVSYTVAIRG-LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-  563 (645)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-  563 (645)
                      +++.+.. +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+...|+++.|+.+|++.++... 
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9998765 3345555554443 34468999999999999874 234678899999999999999999999999987543 


Q ss_pred             Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          564 EL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       564 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      .|  ....|...+..-...|+.+.+.++.+++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33  356889999988999999999999999865

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.3e-07  Score=90.31  Aligned_cols=304  Identities=10%  Similarity=-0.003  Sum_probs=199.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hchHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----H
Q 006437          257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV------VTYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APD----L  325 (645)
Q Consensus       257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~  325 (645)
                      ........+...|++++|.+++++..+..  |+.      ..+..+...|...|++++|...+++..+... .++    .
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            44445566788899999999999887642  332      3566667788888999999999888765311 011    2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCC-CHHHHHHHHHHHHH
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA-DLVVYNALLSYFCK  404 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~  404 (645)
                      ..+..+...+...|++..+...+..........                          .....+ ....+..+...+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--------------------------~~~~~~~~~~~~~~la~~~~~  145 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--------------------------HLEQLPMHEFLVRIRAQLLWA  145 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------------TCTTSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--------------------------ccchhhHHHHHHHHHHHHHHH
Confidence            344556677778888888888887665410000                          000011 12344556677788


Q ss_pred             cCChHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CC-C--cHHHHHHHHHHHHh
Q 006437          405 AGFPNQAVKLYNTMLDKGF----TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN---PA-V--NAHVHTAIVDRLIE  474 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~--~~~~~~~l~~~~~~  474 (645)
                      .|+++.+...+........    ......+......+...++...+...+.......   .. +  ....+..+...+..
T Consensus       146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (366)
T d1hz4a_         146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM  225 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence            8999999888887766321    1223344555566677888888888877665431   11 1  12345566777888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHhcC
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKH----IAVPPN-AYTYRVMLLSFCKER  546 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g  546 (645)
                      .|++++|...+++........+   ...+..+..++...|++++|...+++...    .+..|+ ..++..+...|...|
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  305 (366)
T d1hz4a_         226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG  305 (366)
T ss_dssp             TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence            9999999999988765532222   34556678889999999999999988753    344453 457788889999999


Q ss_pred             CHHHHHHHHHHHHHC----CCCc----CHHHHHHHHHHHHhcCChhHHHH
Q 006437          547 NIKMVKRLLQDVIDA----RIEL----DYHTSIRLTKFIFKFHSSSSAVN  588 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~  588 (645)
                      ++++|.+.+++..+.    |...    ....+..++..+...++.+++.+
T Consensus       306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            999999999987642    2210    23345556666777777777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.7e-07  Score=88.03  Aligned_cols=271  Identities=12%  Similarity=-0.030  Sum_probs=158.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CChhchHHHH
Q 006437          227 LNCFCKMGRIAEAYQLLGLMITLGTSLS----VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG----CS-PNVVTYTSLI  297 (645)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li  297 (645)
                      ...+...|++++|.++++...+.....+    ...+..+...|...|++++|.+.|++..+..    .. .....+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4445566666666666666655422211    2245555566666677777766666654321    00 0123344455


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC----CCC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          298 KGFMEAKMFSIAFSFLDMLESE----GHA--PD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV  370 (645)
Q Consensus       298 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  370 (645)
                      ..+...|++..+...+......    +..  +. ...+..+...+...|+++.+...+............          
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------  168 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP----------  168 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh----------
Confidence            5666677777777766655431    111  11 123445566777888888888888777653211111          


Q ss_pred             HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HhhHHHHHHHHHcCCCHH
Q 006437          371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTPD--NYSFVGLLRGLCGARKID  444 (645)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~~~  444 (645)
                                        ......+......+...++..++...+.+....    +..+.  ...+..+...+...|+++
T Consensus       169 ------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T d1hz4a_         169 ------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA  230 (366)
T ss_dssp             ------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHH
Confidence                              112233444455566667777776666554431    11111  123444555667788888


Q ss_pred             HHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 006437          445 EAINVYQGIVMNNPAV---NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPL-DVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       445 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      .|...+..........   ....+..+..++...|++++|...++++...    +..| ....+..+...|.+.|++++|
T Consensus       231 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  310 (366)
T d1hz4a_         231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  310 (366)
T ss_dssp             HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence            8888888776554322   2334556778888888888888888877532    3223 245677788888999999999


Q ss_pred             HHHHHHHhh
Q 006437          517 YILYSQMKH  525 (645)
Q Consensus       517 ~~~~~~m~~  525 (645)
                      .+.+++..+
T Consensus       311 ~~~l~~Al~  319 (366)
T d1hz4a_         311 QRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.1e-07  Score=88.70  Aligned_cols=129  Identities=11%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR-GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      .|...+....+.|+.+.|.++|+.+.+.+.. +...|..... -+...|+.+.|..+|+.+....+. +...+...++.+
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~  213 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Confidence            3444444455555555555555555544211 1222222111 122334555555555555554333 344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437          473 IEAGRCHKAIQLFRRAIVEK-YPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMK  524 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~  524 (645)
                      .+.|++++|..+|++.+... .+|+  ...|...+.--...|+.+.+..+++++.
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555555555554432 1111  2234444444444455555555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.4e-08  Score=90.81  Aligned_cols=202  Identities=12%  Similarity=0.033  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437          393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL  472 (645)
Q Consensus       393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (645)
                      .+|..+...|.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...|+++++..+. +...+..+..+|
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence            456667788899999999999999988853 335778888999999999999999999999998776 667788899999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----H
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN----I  548 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----~  548 (645)
                      ...|++++|...|++.++.. +.+......+..++.+.+..+.+..+........  ++...+. ++..+.....    .
T Consensus       116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence            99999999999999998875 3455555555555666666666666666665532  2222222 1222211111    2


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +.+...+......... ...+|..+...|...|++++|.+.|++..+  ..|+..
T Consensus       192 ~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~  243 (259)
T d1xnfa_         192 ERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF  243 (259)
T ss_dssp             HHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC
T ss_pred             HHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCH
Confidence            2222222211111111 245677789999999999999999999984  566543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.1e-07  Score=90.12  Aligned_cols=216  Identities=8%  Similarity=-0.100  Sum_probs=111.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHH
Q 006437          268 LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAK--MFSIAFSFLDMLESEGHAPDLVFHN-VLIDCLSKMGSYDDA  344 (645)
Q Consensus       268 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a  344 (645)
                      .|++++|+.+++...+.. +.+...|..+..++...+  ++++|...++.+.+... .+...+. .....+...+..+.|
T Consensus        86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence            344667777777776543 335556666666665554  46778878877766532 2344433 334566667888888


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437          345 LDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE-VEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF  423 (645)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  423 (645)
                      +..++.+.+.. +-+...++.+..++.+.|++++|...+.... ..|+   .......+...+..+++...+....... 
T Consensus       164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence            88888777653 2345666666667777777666654442210 0000   1112222334444455555555444432 


Q ss_pred             CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE  491 (645)
Q Consensus       424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  491 (645)
                      +++...+..+...+...++.++|...+.+....++. +...+..+..+|...|++++|.+.++++.+.
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            122223333333344444455555544444433322 3334444444444444445554444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.4e-08  Score=96.36  Aligned_cols=201  Identities=8%  Similarity=-0.060  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437          392 LVVYNALLSYFCKAG--FPNQAVKLYNTMLDKGFTPDNYSFV-GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAI  468 (645)
Q Consensus       392 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  468 (645)
                      ...|..+..++...+  ++++|+..++.+.+.. +++...+. .....+...+..+.|...++.++..++. +...|..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l  184 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR  184 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence            334444444444433  3566666666665542 22233332 2334445566666666666666666554 55566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  548 (645)
                      ..++.+.|++++|...++...+..  |+   ...+...+...+..+++...+....... +++...+..+...+...|+.
T Consensus       185 ~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         185 SCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence            666666666655544333322210  11   0112222333444555555555555432 22344444555555556666


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437          549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      ++|...+.+..+.++. +...+..++.++.+.|+.++|++.++++.+  +.|+..
T Consensus       259 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~  310 (334)
T d1dcea1         259 LESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA  310 (334)
T ss_dssp             HHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccH
Confidence            6666666655544332 455556666666666666666666666653  455433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=4.4e-07  Score=82.19  Aligned_cols=198  Identities=11%  Similarity=0.041  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437          327 FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG  406 (645)
Q Consensus       327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g  406 (645)
                      ++..+..+|.+.|++++|...|++..+..  |                               .++.+|+.+..+|.+.|
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p-------------------------------~~~~a~~~lg~~~~~~g   85 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR--P-------------------------------DMPEVFNYLGIYLTQAG   85 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-------------------------------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC--C-------------------------------CCHHHHhhhchHHHHHH
Confidence            45555667777777777777777776631  2                               24556677777777888


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437          407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFR  486 (645)
Q Consensus       407 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  486 (645)
                      ++++|+..|++..+.. +-+..++..+..++...|++++|...++..++..+. +......+...+.+.+..+.+..+..
T Consensus        86 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
T d1xnfa_          86 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQ  163 (259)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            8888888888777753 223456667777777888888888888887776654 44444444445555565555555555


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCC----HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          487 RAIVEKYPLDVVSYTVAIRGLLEGGR----TEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       487 ~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      ......  ++...++ ++..+.....    .+.+...+.....  ..|+ ..++..+...+...|++++|.+.+++.++.
T Consensus       164 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         164 HFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             Hhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            544432  2222222 2222222111    2222222221111  1232 346677788888889999999999988876


Q ss_pred             CCC
Q 006437          562 RIE  564 (645)
Q Consensus       562 ~~~  564 (645)
                      ++.
T Consensus       239 ~p~  241 (259)
T d1xnfa_         239 NVH  241 (259)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-06  Score=67.83  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI  548 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  548 (645)
                      .+.+.+.|++++|...|+++++.. |.+...|..+..+|.+.|++++|+..+.+..+.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            344555555555555555555543 3345555555555555556666666555555522 22455555555555555566


Q ss_pred             HHHHHHHHHHHHCCC
Q 006437          549 KMVKRLLQDVIDARI  563 (645)
Q Consensus       549 ~~a~~~~~~~~~~~~  563 (645)
                      ++|...+++.++..+
T Consensus        88 ~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          88 EEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            666555555555433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-06  Score=70.77  Aligned_cols=117  Identities=14%  Similarity=0.092  Sum_probs=87.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437          468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER  546 (645)
Q Consensus       468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  546 (645)
                      ....|.+.|++++|...|+++++.. |.+...|..+..+|...|++++|+..|+++.+  +.| +..+|..+..++...|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcC
Confidence            4566778888999999888888875 55688888888888899999999999998887  456 5678888888889999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--HhcCChhHHHH
Q 006437          547 NIKMVKRLLQDVIDARIELDYHTSIRLTKFI--FKFHSSSSAVN  588 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~  588 (645)
                      ++++|...++++.+..+. +...+..+..+.  ...+.+++|..
T Consensus        93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888886544 455555554432  23334444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.6e-06  Score=70.92  Aligned_cols=27  Identities=11%  Similarity=0.106  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437          535 YRVMLLSFCKERNIKMVKRLLQDVIDA  561 (645)
Q Consensus       535 ~~~ll~~~~~~g~~~~a~~~~~~~~~~  561 (645)
                      +..+..++.+.|++++|.+.++...+.
T Consensus       123 ~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_         123 LYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            334444444555555555554444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.7e-06  Score=64.83  Aligned_cols=96  Identities=20%  Similarity=0.105  Sum_probs=81.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 006437          434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT  513 (645)
Q Consensus       434 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  513 (645)
                      ...+...|++++|...|++.++..+. +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            45677788999999999998888776 77888889999999999999999999988875 56788899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHH
Q 006437          514 EEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       514 ~~A~~~~~~m~~~~~~p~~~  533 (645)
                      ++|+..|++..+  ..|+..
T Consensus        88 ~~A~~~~~~a~~--~~p~~~  105 (117)
T d1elwa_          88 EEAKRTYEEGLK--HEANNP  105 (117)
T ss_dssp             HHHHHHHHHHHT--TCTTCH
T ss_pred             HHHHHHHHHHHH--hCCCCH
Confidence            999999999987  567543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.8e-06  Score=69.46  Aligned_cols=122  Identities=7%  Similarity=-0.080  Sum_probs=84.5

Q ss_pred             HHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437          162 DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ  241 (645)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (645)
                      ..+...|+++.|++.|+++.+++..+|..+..++...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.+
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence            345667788888888887777777777777777788888888888888777754 2356677777777888888888888


Q ss_pred             HHHHHHHcCCC--------------cC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437          242 LLGLMITLGTS--------------LS-VNAWTVLIDGFRRLRRLDMAGYLWEKMVQN  284 (645)
Q Consensus       242 ~~~~~~~~~~~--------------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  284 (645)
                      .|+........              ++ ..++..+..++.+.|++++|.+.++...+.
T Consensus        92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77776643110              01 234455566677777777777777766654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=6.3e-07  Score=77.51  Aligned_cols=92  Identities=17%  Similarity=0.084  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFC  543 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~  543 (645)
                      +......|.+.|++++|+..|+++++.. |.+...|+.+..+|.+.|++++|+..|++..+  +.| +..+|..+..+|.
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence            3334444445555555555554444433 23444445555555555555555555555444  334 3444444555555


Q ss_pred             hcCCHHHHHHHHHHHH
Q 006437          544 KERNIKMVKRLLQDVI  559 (645)
Q Consensus       544 ~~g~~~~a~~~~~~~~  559 (645)
                      ..|++++|...++++.
T Consensus        84 ~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          84 EMESYDEAIANLQRAY   99 (201)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            5555555555555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2.5e-06  Score=73.60  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=88.0

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          495 LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       495 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      |+...+......|.+.|++++|+..|++..+  +.| ++..|..+..+|.+.|++++|+..++++++..+. ++..|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence            6677777888999999999999999999988  445 7888999999999999999999999999886654 68899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 006437          574 TKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       574 ~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                      +.+|.+.|++++|+..++++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=4.4e-06  Score=76.70  Aligned_cols=200  Identities=12%  Similarity=0.009  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----CcHHH
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-----VNAHV  464 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~  464 (645)
                      |......|...|++++|.+.|.+..+.    +-.+ ...+|..+..+|.+.|++++|...++........     ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            455667788888888888888877652    1111 2356778888888899999999998877654211     12344


Q ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----C-H
Q 006437          465 HTAIVDRLIE-AGRCHKAIQLFRRAIVE----KYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-----N-A  532 (645)
Q Consensus       465 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~-~  532 (645)
                      +..+...|.. .|++++|.+.+++..+.    +.++ -..++..+...+...|++++|+..|+++.......     . .
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            5556666644 59999999999887543    2111 13457788889999999999999999987632111     1 1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C---HHHHHHHHHHHHh--cCChhHHHHHHHHHH
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D---YHTSIRLTKFIFK--FHSSSSAVNQLVEMC  594 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~--~g~~~~A~~~~~~m~  594 (645)
                      ..+...+..+...|+++.|.+.+++..+..+.. +   ......++.++..  .+++++|+..|+++.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            233445556677899999999999887644321 1   2344566666654  345778888777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.3e-06  Score=66.68  Aligned_cols=102  Identities=18%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 006437          434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT  513 (645)
Q Consensus       434 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  513 (645)
                      ...|.+.|++++|...|++.++..+. +...|..+..+|...|++++|...|+++++.. +-+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            45677899999999999999988876 88889999999999999999999999998875 45678999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC-HHHHHHHH
Q 006437          514 EEAYILYSQMKHIAVPPN-AYTYRVML  539 (645)
Q Consensus       514 ~~A~~~~~~m~~~~~~p~-~~~~~~ll  539 (645)
                      ++|...+++...  +.|+ ...+..+.
T Consensus        95 ~eA~~~~~~a~~--~~p~~~~~~~~l~  119 (159)
T d1a17a_          95 RAALRDYETVVK--VKPHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH--cCCCCHHHHHHHH
Confidence            999999999988  4564 44444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=0.0014  Score=58.45  Aligned_cols=232  Identities=12%  Similarity=0.017  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437          326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA  405 (645)
Q Consensus       326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~  405 (645)
                      ..+..+...+...++.++|++.|++..+.|   +...+..|...|....            +                ..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~------------~----------------~~   51 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------------G----------------VE   51 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------------S----------------SC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------------C----------------cc
Confidence            344455556666777777777777776654   2222222222211100            0                13


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH----hcCC
Q 006437          406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLC----GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI----EAGR  477 (645)
Q Consensus       406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~  477 (645)
                      .+...|...+....+.+   +......+...+.    ...+.+.|...++.....+..   .....+...+.    ....
T Consensus        52 ~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~  125 (265)
T d1ouva_          52 KNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRD  125 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCC
T ss_pred             hhHHHHHHhhccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccch
Confidence            34555666666555544   2222222222222    245667777777777665532   22222323333    2345


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 006437          478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIK  549 (645)
Q Consensus       478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~  549 (645)
                      ...+...+......+   +...+..|...|..    ..+...+...++...+.|   +......+...|..    ..+++
T Consensus       126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence            677777777766654   66777777777775    356777888888877644   55666666666654    56899


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChh
Q 006437          550 MVKRLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLGLIPDEM  603 (645)
Q Consensus       550 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~  603 (645)
                      +|..+|++..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|..+...
T Consensus       200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~  254 (265)
T d1ouva_         200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  254 (265)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHH
Confidence            9999999888876   46677778887775    347888999999998887665433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.24  E-value=4.7e-06  Score=63.63  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437          503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH  581 (645)
Q Consensus       503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  581 (645)
                      +...+.+.|++++|+..|++..+  ..| +..+|..+..++.+.|++++|+..++++++..+. +...+..++..|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence            34455556666666666666555  334 4555666666666666666666666666654443 4556666666666666


Q ss_pred             ChhHHHHHHHHH
Q 006437          582 SSSSAVNQLVEM  593 (645)
Q Consensus       582 ~~~~A~~~~~~m  593 (645)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=3.5e-05  Score=70.47  Aligned_cols=200  Identities=12%  Similarity=0.025  Sum_probs=126.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 006437          331 LIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQ  410 (645)
Q Consensus       331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  410 (645)
                      ....|...+++++|.+.|.+..+..               .+.++..            .-..+|..+..+|.+.|++++
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~---------------~~~~~~~------------~~a~~~~~~g~~y~~~~~~~~   95 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQ---------------KKAGNED------------EAGNTYVEAYKCFKSGGNSVN   95 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHH---------------HHTTCHH------------HHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHH---------------HHcCCCH------------HHHHHHHHHHHHHHHhCCcHH
Confidence            3456777888888888887766521               0111100            012356666777777888888


Q ss_pred             HHHHHHHHHHC----CC-CCCHhhHHHHHHHHH-cCCCHHHHHHHHHHHHHcC---CCC--cHHHHHHHHHHHHhcCCHH
Q 006437          411 AVKLYNTMLDK----GF-TPDNYSFVGLLRGLC-GARKIDEAINVYQGIVMNN---PAV--NAHVHTAIVDRLIEAGRCH  479 (645)
Q Consensus       411 a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~  479 (645)
                      |++.++...+.    |. .....++..+...|. ..|++++|.+.+++..+..   ..+  ...++..+...|.+.|+++
T Consensus        96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~  175 (290)
T d1qqea_          96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence            88777765542    11 111334555555664 4699999999998876431   111  2345677899999999999


Q ss_pred             HHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHh--c
Q 006437          480 KAIQLFRRAIVEKYPLDV------VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN------AYTYRVMLLSFCK--E  545 (645)
Q Consensus       480 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~--~  545 (645)
                      +|.+.|+++.........      ..+...+..+...|+++.|...+++..+.  .|+      ...+..++.++..  .
T Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~  253 (290)
T d1qqea_         176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS  253 (290)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCH
Confidence            999999998876422111      12345556677889999999999999873  332      2345666667654  3


Q ss_pred             CCHHHHHHHHHHHH
Q 006437          546 RNIKMVKRLLQDVI  559 (645)
Q Consensus       546 g~~~~a~~~~~~~~  559 (645)
                      +.+++|+..|+.+.
T Consensus       254 e~~~eai~~y~~~~  267 (290)
T d1qqea_         254 EQLSEHCKEFDNFM  267 (290)
T ss_dssp             TTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHh
Confidence            45777777776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.4e-06  Score=63.26  Aligned_cols=96  Identities=6%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 006437          466 TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPPN-AYTYRVMLLS  541 (645)
Q Consensus       466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~  541 (645)
                      ..+++.+...+++++|.+.|++.+..+ |.++.++..+..++.+.++   .++|+.+++++...+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345566666677777777777777655 4456666667777665443   3457777777665321222 2356666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCC
Q 006437          542 FCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       542 ~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      |.+.|++++|++.|+++++.+
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHhC
Confidence            777777777777777777644

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.21  E-value=6.6e-06  Score=62.75  Aligned_cols=89  Identities=12%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE  545 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~  545 (645)
                      .+...+.+.|++++|...|++++... |-++..|..+..++.+.|++++|+..+++..+  +.| +...+..+...|...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence            34556677777777777777777664 33577777777777777778888877777776  445 567777777777777


Q ss_pred             CCHHHHHHHHHHH
Q 006437          546 RNIKMVKRLLQDV  558 (645)
Q Consensus       546 g~~~~a~~~~~~~  558 (645)
                      |++++|.+.+++.
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            7888877777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.21  E-value=0.0017  Score=57.80  Aligned_cols=115  Identities=16%  Similarity=0.029  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCC
Q 006437          441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGR  512 (645)
Q Consensus       441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  512 (645)
                      .....+...+......+   +...+..+...|..    ..+...+...++...+.|   +......+...|..    ..+
T Consensus       124 ~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         124 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC
T ss_pred             chhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccc
Confidence            34555555555544433   44455556666654    456777777777777765   66666666666665    467


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 006437          513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDARIE  564 (645)
Q Consensus       513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~  564 (645)
                      .++|+..|++..+.|   ++..+..|...|.+    .++.++|.++|++..+.|..
T Consensus       198 ~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         198 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            888999998888765   45566667777764    34788899998888877754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.1e-05  Score=63.34  Aligned_cols=85  Identities=8%  Similarity=-0.053  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF  576 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  576 (645)
                      .+|+.+..+|.+.|++++|+..+++..+  +.| +..++..+..+|...|++++|...|+++.+.++. ++.....+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~  139 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4567788888899999999999999888  456 7888888999999999999999999999886654 67777777666


Q ss_pred             HHhcCChhH
Q 006437          577 IFKFHSSSS  585 (645)
Q Consensus       577 ~~~~g~~~~  585 (645)
                      ..+.+...+
T Consensus       140 ~~~~~~~~~  148 (170)
T d1p5qa1         140 QQRIRRQLA  148 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8.7e-06  Score=62.86  Aligned_cols=100  Identities=11%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 006437          431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR---CHKAIQLFRRAIVEKYPLD-VVSYTVAIRG  506 (645)
Q Consensus       431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  506 (645)
                      ..++..+...+++++|.+.|+.....++. +..++..+..++.+.++   +++|..+++++...+..|+ ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            34566667777888888888888877766 66677777777776544   4458888888776542222 3467778888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437          507 LLEGGRTEEAYILYSQMKHIAVPPNAY  533 (645)
Q Consensus       507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~  533 (645)
                      |.+.|++++|++.|+++.+  +.|+..
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence            8888888888888888887  567543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.4e-05  Score=59.13  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------HHHHHHH
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--------AYTYRVM  538 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~l  538 (645)
                      .+...+.+.|++++|++.|++.++.+ |.+...|..+..+|.+.|++++|+..++++.+  +.|+        ..+|..+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence            44555666666666666666666554 33456666666666666666666666666554  1121        1345555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 006437          539 LLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       539 l~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      ...+...+++++|.+.+++...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            5555666666666666666554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=0.0073  Score=54.90  Aligned_cols=136  Identities=10%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHH
Q 006437          117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLC  196 (645)
Q Consensus       117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~  196 (645)
                      |+..--..+...|.+.|.++.|..+|..+..         |..++..+.+.+++..|.+.+.+..  +..+|..+...+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~   80 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV   80 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            3444444556666677777777777775442         3456666677777777777666543  4446666666666


Q ss_pred             hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 006437          197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR  269 (645)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  269 (645)
                      +.....-+     .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus        81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            55443222     2222233345555566777777777777777777766543 2445666777777777654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00019  Score=59.14  Aligned_cols=125  Identities=15%  Similarity=0.087  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      .+......+.+.|++++|+..|.+.++.-  |....+           ..... .....+       ...+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~-----------~~~~~-~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEA-QKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHH-HHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcccc-----------chHHH-hhhchh-------HHHHHHHHHHHHH
Confidence            34445567778888888888888776531  110000           00000 000111       1235667888999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      +.|++++|+..++..+... |.++..|..+..+|...|++++|+..|++..+  +.| |......+....
T Consensus        74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            9999999999999999876 55788999999999999999999999999988  567 455544444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=9e-05  Score=61.20  Aligned_cols=82  Identities=12%  Similarity=-0.044  Sum_probs=62.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437          496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLT  574 (645)
Q Consensus       496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  574 (645)
                      +...|..+..++.+.|++++|+..+.++.+  +.| +..+|..+..++...|++++|.+.|+++++..+. +......+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~  152 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            455677778888888888888888888887  445 6778888888888888888888888888886554 566666665


Q ss_pred             HHHHhc
Q 006437          575 KFIFKF  580 (645)
Q Consensus       575 ~~~~~~  580 (645)
                      .+..+.
T Consensus       153 ~~~~~l  158 (169)
T d1ihga1         153 KVKQKI  158 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.9e-05  Score=59.95  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C-----HHHHHH
Q 006437          500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D-----YHTSIR  572 (645)
Q Consensus       500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~  572 (645)
                      +..+...+.+.|++++|+..|.+..+.  .| +...+..+..+|.+.|++++|.+.++++++..... .     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            456778899999999999999999984  45 68899999999999999999999999998643221 1     357788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          573 LTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       573 l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      +...+...+++++|++.+++.....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            8889999999999999999987543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.87  E-value=0.00034  Score=56.39  Aligned_cols=73  Identities=7%  Similarity=-0.120  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL  573 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  573 (645)
                      .+|+.+..+|.+.|++++|++.+++..+  +.| +..+|..+..++...|++++|...|++..+.++. +......+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            3566677777777777777777777776  344 5677777777777777777777777777775543 44444444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=0.00017  Score=59.82  Aligned_cols=122  Identities=12%  Similarity=-0.012  Sum_probs=76.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437          467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER  546 (645)
Q Consensus       467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  546 (645)
                      .........|++++|.+.|.+.+... +-+...         .....+-+...-..+..    -....+..+..++...|
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~---------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREW-RGPVLD---------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTG---------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC-cccccc---------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            34456677888888888888887652 101100         00000001111111111    01245666777888888


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChh
Q 006437          547 NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN-----LGLIPDEM  603 (645)
Q Consensus       547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~  603 (645)
                      ++++|...++++.+..+. +...|..++.+|.+.|+..+|++.|+++.+     .|+.|+..
T Consensus        82 ~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            888888888888876654 778888888888888888888888888633     48888765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.80  E-value=0.0002  Score=58.97  Aligned_cols=94  Identities=7%  Similarity=-0.030  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437          498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI  577 (645)
Q Consensus       498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  577 (645)
                      ..|+.+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...++++.+.++. +......+..+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            346667777888888888888888888732 336778888888888888888888888888886654 666666666665


Q ss_pred             HhcCChhH-HHHHHHHH
Q 006437          578 FKFHSSSS-AVNQLVEM  593 (645)
Q Consensus       578 ~~~g~~~~-A~~~~~~m  593 (645)
                      .+.+...+ ..+++.+|
T Consensus       143 ~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            55544433 33444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.76  E-value=0.00038  Score=56.03  Aligned_cols=121  Identities=14%  Similarity=-0.016  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437          394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI  473 (645)
Q Consensus       394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (645)
                      .+......+.+.|++.+|+..|.+..+.-  +...           ...-.........       ....++..+..+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence            44555567778888888888888777531  1100           0000000000000       12346677888999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHH
Q 006437          474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRV  537 (645)
Q Consensus       474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~  537 (645)
                      +.|++++|++.++++++.+ |.++.+|..+..++...|++++|+..|++..+  +.|+ ..+...
T Consensus        79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~  140 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNS  140 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred             Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            9999999999999999876 56789999999999999999999999999998  6675 444433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=0.018  Score=52.21  Aligned_cols=176  Identities=13%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             CCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437          151 TPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCF  230 (645)
Q Consensus       151 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  230 (645)
                      .|+..-...+.+.|.+.|.++.|..+|..+.     -|..++..+.+.++++.|.+++...      -+..+|..+...+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l   79 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC   79 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence            3555555667777888888999998888543     3677778888888888888877643      2566888888888


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHH
Q 006437          231 CKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAF  310 (645)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  310 (645)
                      .+......+     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..
T Consensus        80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~  152 (336)
T d1b89a_          80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMR  152 (336)
T ss_dssp             HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred             HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHH
Confidence            877766543     2222333445556677888888889999888888877543 2356667788888887764 34444


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437          311 SFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDG  350 (645)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  350 (645)
                      +.++...      +..-...++..|.+.+-++++.-++.+
T Consensus       153 e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~  186 (336)
T d1b89a_         153 EHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDK  186 (336)
T ss_dssp             HHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHh
Confidence            4443321      111223344555555555554444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=0.00039  Score=57.20  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      +......+.+.|++++|+..|.+..+.            ..............       ... ......+..+..++.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHh
Confidence            444555677788888888888766531            00000000111100       000 1144566778889999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437          475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF  542 (645)
Q Consensus       475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~  542 (645)
                      .|++++|+..++++++.. |.++..|..+..+|...|++++|+..|++..+  +.| +......+..+.
T Consensus        90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVK  155 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            999999999999999875 55788999999999999999999999999998  556 555555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.66  E-value=3.8e-05  Score=68.35  Aligned_cols=122  Identities=14%  Similarity=0.031  Sum_probs=78.2

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006437          473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMV  551 (645)
Q Consensus       473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a  551 (645)
                      .+.|++++|+..+++.++.. |.|...+..+...|+..|++++|...++...+  ..|+ ...+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHH
Confidence            45688888888888888775 55788888888888888999999888888887  5574 44444444444333332222


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      ..-.......+..++...+......+.+.|+.++|.++++++.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            1111100011111123334445567888899999999999987643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.64  E-value=0.0011  Score=54.22  Aligned_cols=80  Identities=13%  Similarity=0.025  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 006437          463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLS  541 (645)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~  541 (645)
                      .+|..+..+|.+.|++++|+..+++.+... |.+..+|..+..++...|++++|+..|+++.+  +.| +......+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            346667888999999999999999999875 66789999999999999999999999999998  566 44454444444


Q ss_pred             HHhc
Q 006437          542 FCKE  545 (645)
Q Consensus       542 ~~~~  545 (645)
                      ....
T Consensus       142 ~~~~  145 (168)
T d1kt1a1         142 QKKA  145 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.0006  Score=56.33  Aligned_cols=58  Identities=24%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM  523 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  523 (645)
                      +..+...+.+.|++++|...+++++... |-+...|..++.+|.+.|+.++|++.|+++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3444445555555555555555555443 334455555555555555555555555554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=0.00014  Score=58.02  Aligned_cols=13  Identities=15%  Similarity=0.552  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHH
Q 006437          548 IKMVKRLLQDVID  560 (645)
Q Consensus       548 ~~~a~~~~~~~~~  560 (645)
                      +++|.+.|++.++
T Consensus       102 ~~~A~~~~~kal~  114 (145)
T d1zu2a1         102 FDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcccc
Confidence            3455555555555

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=0.00022  Score=56.86  Aligned_cols=116  Identities=15%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA----------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG  506 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  506 (645)
                      |-+.+.+++|...++..++..|. +...+..+..++...          +.+++|...|+++++.+ |.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            34455677777777777777665 666666666666533          34466777777776654 3456667777666


Q ss_pred             HHhcC-----------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          507 LLEGG-----------RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       507 ~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      |...|           ++++|.+.|++..+  +.|+...+..-+..+      .+|.+++.++.+.|
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            66543           24666667776666  556555444333322      45555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.48  E-value=0.00013  Score=64.76  Aligned_cols=124  Identities=10%  Similarity=0.069  Sum_probs=86.5

Q ss_pred             HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437          437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA  516 (645)
Q Consensus       437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  516 (645)
                      ..+.|++++|...+++.++..|. +...+..+...|+..|++++|.+.++...+.. |-+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            34679999999999999999887 88899999999999999999999999998864 22345555555554444333333


Q ss_pred             HHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437          517 YILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI  563 (645)
Q Consensus       517 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  563 (645)
                      ..-.......+ .| +...+......+...|+.++|.+.++++.+..+
T Consensus        84 ~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          84 AQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            22221111111 23 234444556677889999999999999887543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00022  Score=70.55  Aligned_cols=110  Identities=11%  Similarity=-0.100  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHhcCCcccHHHHHhcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC
Q 006437          362 TFCSLLSTVCLSGRFSLLPKLVCGLEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA  440 (645)
Q Consensus       362 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  440 (645)
                      .+..+...+.+.|+.+.|...+... ..++ ..++..+...+...|++++|+..|++..+.. +-+...|+.+...+...
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSK  199 (497)
T ss_dssp             ---------------------CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHc
Confidence            3344444444555554444333110 0111 2345556667777777777777777777652 23446777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437          441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE  474 (645)
Q Consensus       441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (645)
                      |+..+|...|.+.+...++ ....+..|...+.+
T Consensus       200 ~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVKFP-FPAASTNLQKALSK  232 (497)
T ss_dssp             TCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Confidence            7777777777777665543 55556666655544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.25  E-value=0.0018  Score=52.05  Aligned_cols=90  Identities=11%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCC-CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcC---
Q 006437          506 GLLEGGRTEEAYILYSQMKHIA-VPP----------NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA-----RIELD---  566 (645)
Q Consensus       506 ~~~~~g~~~~A~~~~~~m~~~~-~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---  566 (645)
                      .+.+.|++++|+..|++..+.. -.|          ....|+.+..+|...|++++|.+.+++.++.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            3344556666666666554310 001          1245666667777777777777776666532     11111   


Q ss_pred             --HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437          567 --YHTSIRLTKFIFKFHSSSSAVNQLVEMCN  595 (645)
Q Consensus       567 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  595 (645)
                        ...+..+..+|...|++++|++.|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              22456677778888888888887777653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00086  Score=66.08  Aligned_cols=136  Identities=13%  Similarity=0.025  Sum_probs=80.1

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      .+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.......   ....+..+.+.+...|++++|...
T Consensus        99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence            344555555444333321 2344556667777788888888888777665432   234667788999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER  546 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  546 (645)
                      |+++.+.. |.+...|+.|...+...|+..+|+..|.+..... .|-..++..|...+.+..
T Consensus       175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            99998875 4567899999999999999999999999998754 567888888887776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.78  E-value=0.005  Score=49.37  Aligned_cols=92  Identities=15%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCC-CC----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCCC-
Q 006437          469 VDRLIEAGRCHKAIQLFRRAIVEKY-PL----------DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----AVPPN-  531 (645)
Q Consensus       469 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-  531 (645)
                      ...+.+.|++++|++.|++.++..- -|          ....|+.+..+|.+.|++++|...+++..+.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            4456677888888888888775320 01          1356888899999999999999988887641     12222 


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          532 ----AYTYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       532 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                          ...+..+..+|...|++++|.+.|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                22577788999999999999999999875

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.67  E-value=0.033  Score=42.77  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006437          477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVK  552 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~  552 (645)
                      ++++|.+.|++..+.|   +......|..  ....+.++|+.++++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4556666666665554   3333333321  23346667777777766654   34444445554443    34667777


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 006437          553 RLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLGL  598 (645)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~  598 (645)
                      ++|++..+.+   ++.....|...|..    ..+.++|.+++++..+.|.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            7777776655   34555556666554    3466777777777776653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0064  Score=43.71  Aligned_cols=30  Identities=3%  Similarity=0.121  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          533 YTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .++..+..++.+.|++++|...++++++.+
T Consensus        47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          47 SVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            344445555555555555555555555433

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.44  E-value=0.095  Score=38.27  Aligned_cols=140  Identities=9%  Similarity=0.002  Sum_probs=79.6

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006437          403 CKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI  482 (645)
Q Consensus       403 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  482 (645)
                      .-.|..++..+++.+....   .+..-|+.++--....-+-+...+.++.+-+.. +.            ..++++.+..
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F-Dl------------s~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DL------------DKCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CG------------GGCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc-Cc------------hhhhcHHHHH
Confidence            3456677777777776654   244556666555544555555555555443221 11            1223332222


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437          483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR  562 (645)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  562 (645)
                      .-+-.+     .-+...++..+..+.+.|+-+.-.++++.+.+.+ +|++..+-.+..+|.+.|+..++-+++.++-+.|
T Consensus        77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            222211     1234445566666777777777777777766543 6777777777777777777777777777777766


Q ss_pred             CC
Q 006437          563 IE  564 (645)
Q Consensus       563 ~~  564 (645)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            54

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.012  Score=42.09  Aligned_cols=72  Identities=10%  Similarity=0.109  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHH
Q 006437          465 HTAIVDRLIEAGRCHKAIQLFRRAIVEK-----YPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRV  537 (645)
Q Consensus       465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~  537 (645)
                      +-.+...+.+.|++++|...|++.++..     ..++ ..+++.+..++.+.|++++|+..++++.+  +.|+ ..++..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHHH
Confidence            3456666777777777777777665431     0111 45677788888888888888888888877  5564 444444


Q ss_pred             H
Q 006437          538 M  538 (645)
Q Consensus       538 l  538 (645)
                      +
T Consensus        86 l   86 (95)
T d1tjca_          86 L   86 (95)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.084  Score=40.35  Aligned_cols=80  Identities=10%  Similarity=-0.034  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCH
Q 006437          477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNI  548 (645)
Q Consensus       477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~  548 (645)
                      +.++|.+.+++..+.|   ++.....|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+.
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence            3344444444444443   33333333333332    234455555555555433   22233333333332    2355


Q ss_pred             HHHHHHHHHHHHCC
Q 006437          549 KMVKRLLQDVIDAR  562 (645)
Q Consensus       549 ~~a~~~~~~~~~~~  562 (645)
                      ++|.+++++..+.|
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            55555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.81  E-value=0.21  Score=36.44  Aligned_cols=140  Identities=11%  Similarity=0.094  Sum_probs=94.8

Q ss_pred             HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006437          438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAY  517 (645)
Q Consensus       438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  517 (645)
                      .-.|.+++..+++.+.....   +..-||.++--....-+-+...++++.+-+.   -|..          ..++.....
T Consensus        13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHHH
Confidence            44677777777777776654   4444555555555555555555555544322   1211          234444444


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437          518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG  597 (645)
Q Consensus       518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  597 (645)
                      ..+-.+     ..++.-++..++....+|+-+.-.++...+.+ +-++++...-.+..+|.+-|...++.+++.++.+.|
T Consensus        77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            443332     23456677778888999999999999998777 456789999999999999999999999999999998


Q ss_pred             CC
Q 006437          598 LI  599 (645)
Q Consensus       598 ~~  599 (645)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            75

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=1.3  Score=41.74  Aligned_cols=286  Identities=8%  Similarity=-0.010  Sum_probs=154.8

Q ss_pred             CCChHHHHHHHhcCC---ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006437           47 ILAPHIVHSTLLNCP---SDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFL  123 (645)
Q Consensus        47 ~~~~~~~~~~l~~~~---~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  123 (645)
                      |+.|-+.-..+....   +......|   +...|+.+.....-..-+..+++ .+++......+.     ..+.+...-.
T Consensus        36 pL~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~~-~~~w~~~~~~~~-----~~p~~~~~~c  106 (450)
T d1qsaa1          36 PLYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELAR-REDWRGLLAFSP-----EKPGTTEAQC  106 (450)
T ss_dssp             TTHHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHCC-----SCCSSHHHHH
T ss_pred             CCHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHh-ccCHHHHHHhcc-----CCCCCHHHHH
Confidence            566666665555432   33333333   33344322233333444566777 677666444331     2234555555


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCC-----------------CCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChh
Q 006437          124 LFLRIYWRGEMYGMVLEAFDEMGRFGF-----------------TPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFL  186 (645)
Q Consensus       124 ~li~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~  186 (645)
                      ....+....|+...|......+-..|.                 ..+...+-.-+..+...|+...|..+...+......
T Consensus       107 ~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~  186 (450)
T d1qsaa1         107 NYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQT  186 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHH
Confidence            666777777877777776666654441                 122222223334444556666666666655444333


Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCcCHHhHHH----
Q 006437          187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK--MGRIAEAYQLLGLMITLGTSLSVNAWTV----  260 (645)
Q Consensus       187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~----  260 (645)
                      .....+....   +...+.....   ..  .++......+..++.+  ..+.+.+..++......... +..-+..    
T Consensus       187 ~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~  257 (450)
T d1qsaa1         187 IASAIISLAN---NPNTVLTFAR---TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDI  257 (450)
T ss_dssp             HHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHH
Confidence            4444444332   2333322221   11  2233333333333333  25778888888887654322 2222222    


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437          261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS  340 (645)
Q Consensus       261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  340 (645)
                      +.......+..+.+...+......+  .+.....-.+......+++..+...++.|..... ....-.--+.+++...|+
T Consensus       258 ~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~  334 (450)
T d1qsaa1         258 VAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGR  334 (450)
T ss_dssp             HHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCC
Confidence            2223334566778888887776653  3444444456666778899999999988754322 233344457788999999


Q ss_pred             HHHHHHHHHHHHH
Q 006437          341 YDDALDVYDGLLE  353 (645)
Q Consensus       341 ~~~a~~~~~~~~~  353 (645)
                      .+.|...|..+..
T Consensus       335 ~~~A~~~~~~~a~  347 (450)
T d1qsaa1         335 EAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHhc
Confidence            9999999998864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.04  E-value=0.79  Score=33.65  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=28.2

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437          531 NAYTYRVMLLSFCKER---NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC  594 (645)
Q Consensus       531 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  594 (645)
                      +..|-....+++.+..   +.++|+.+++++.+.+..-....+-.|.-+|.+.|++++|.+.++.+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3334334444444332   334455555555443321112344444445555555555555555555

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=6.7  Score=36.52  Aligned_cols=169  Identities=10%  Similarity=0.062  Sum_probs=84.6

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437          405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL  484 (645)
Q Consensus       405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  484 (645)
                      .+..+.+...+......+  .+.......+......++...+...+..+... +.....-.--+..++...|+.+.|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence            344455555555444432  23333333444444556666666666655322 111233334456666677777777777


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437          485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV--PPN-AY---TYRVMLLSFCKERNIKMVKRLLQDV  558 (645)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~-~~---~~~~ll~~~~~~g~~~~a~~~~~~~  558 (645)
                      |..+...   ++  -|..|...  +.|..-       .+.....  .+. ..   .-..-+..+...|....|...|..+
T Consensus       342 ~~~~a~~---~~--fYG~LAa~--~Lg~~~-------~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l  407 (450)
T d1qsaa1         342 LHQLMQQ---RG--FYPMVAAQ--RIGEEY-------ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL  407 (450)
T ss_dssp             HHHHHTS---CS--HHHHHHHH--HTTCCC-------CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcC---CC--hHHHHHHH--HcCCCC-------CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence            7766532   22  22222211  112100       0000000  000 00   0112244556778888888887777


Q ss_pred             HHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437          559 IDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM  593 (645)
Q Consensus       559 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  593 (645)
                      .+.   .+..-...+.....+.|.++.|+....+.
T Consensus       408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            643   24556667777788888888888776665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.06  E-value=1.9  Score=31.48  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          534 TYRVMLLSFCKERNIKMVKRLLQDVID  560 (645)
Q Consensus       534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  560 (645)
                      .+..|.-+|.+.|++++|.+.++.+++
T Consensus        75 ~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          75 CLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            333444444444444444444444444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.10  E-value=3.8  Score=28.13  Aligned_cols=47  Identities=13%  Similarity=0.072  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437          237 AEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ  283 (645)
Q Consensus       237 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  283 (645)
                      =++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+.++.
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34445555555555666666666666666666666666666666553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.77  E-value=5.5  Score=27.30  Aligned_cols=64  Identities=13%  Similarity=0.027  Sum_probs=45.7

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006437           99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDV  163 (645)
Q Consensus        99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  163 (645)
                      +.-++.+-+..+......|++....+.+++|.+.+++..|+++++-+... ..++...|..+++-
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe   84 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE   84 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence            44566666777777777888888888888888888888888888877632 12344566665543