Citrus Sinensis ID: 006457
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LW32 | 659 | Pentatricopeptide repeat- | yes | no | 0.975 | 0.952 | 0.654 | 0.0 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.928 | 0.861 | 0.401 | 1e-142 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.931 | 0.741 | 0.422 | 1e-141 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.923 | 0.751 | 0.405 | 1e-140 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.920 | 0.666 | 0.409 | 1e-140 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.953 | 0.746 | 0.385 | 1e-137 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.931 | 0.809 | 0.387 | 1e-137 | |
| Q9CAY1 | 623 | Putative pentatricopeptid | no | no | 0.908 | 0.939 | 0.416 | 1e-137 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.928 | 0.810 | 0.384 | 1e-133 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.975 | 0.878 | 0.359 | 1e-132 |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/657 (65%), Positives = 529/657 (80%), Gaps = 29/657 (4%)
Query: 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL 67
SVS ++ + ++H+ NLTTLFN+YVDK +VFSWNSVIADLAR GDS EAL AFSSMRKL
Sbjct: 12 SVSRLL-HTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL 70
Query: 68 SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDA 127
SL PTRS+FPCAIK+CS+L D+ SGKQ HQQAF+FG+ D+FVSSALI MYS CG+L DA
Sbjct: 71 SLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130
Query: 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD 187
RK+FDEIP+R NIVSWTSM+ GY N NA +A+ LFK+ L++E++ + D +F+D
Sbjct: 131 RKVFDEIPKR--NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEND------DDDAMFLD 182
Query: 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH--VDVSRKV 245
S+ + SV+SACSRV G+TE H FVIKRGFD V VGNTL+DAYA+GG V V+RK+
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242
Query: 246 FDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV 305
FD +++KD V++NSI+++YAQ+G++ EA +VF ++VK+ V NA+TLS VLLA++H G
Sbjct: 243 FDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGA 302
Query: 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAG 365
LR+GKCIHDQVI+M LE+ VIVGTSIIDMYCKCG+V+ ARKAF++MK KNVRSWTAMIAG
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425
YGMH A +AL+LF MI +GVRPNYITFVSVL+ACSHAGL EGW W N M F +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485
G+EHYGCMVDLLGRAG L++AYDLI+ MK+K D ++W SLL ACRIHKNV+L EI+ +L
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARL 482
Query: 486 FELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVG 545
FEL+ +NCGY++LLS+IYA+AGRW+DVER R +MKNR L K PGFSL+EL G+VH FL+G
Sbjct: 483 FELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 546 DKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------ 599
D+EHPQ EKIYE+L ELN KL E GYV++ +SV HDVD+EEKEMTLR+HSEKLA
Sbjct: 543 DEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIM 602
Query: 600 ------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVC DCH VI+LISK+VDRE VVRD+KRFH+FKDG CSCGDYW
Sbjct: 603 NTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/630 (40%), Positives = 391/630 (62%), Gaps = 32/630 (5%)
Query: 33 VDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSG 92
+ + +F WN++I +R +AL +S+M+ ++P TFP +K+CS L L G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 93 KQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYV 152
+ H Q F GF DVFV + LI +Y+KC L AR +F+ +P R IVSWT++++ Y
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 153 QNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHG 212
QN EAL +F + +V D VA+ SVL+A + + H
Sbjct: 199 QNGEPMEALEIFSQM------------RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246
Query: 213 FVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAE 272
V+K G + E + +L YA+ G V ++ +FD M + + WN++I+ YA+NG A E
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332
A+D+F +M+ + DV+ + +++++ + A A +G L + +++ V + D + V + +++I
Sbjct: 307 AIDMFHEMI-NKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALI 365
Query: 333 DMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392
DM+ KCG V+ AR F++ +++V W+AMI GYG+H RAREA+ L+ M + GV PN +
Sbjct: 366 DMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDV 425
Query: 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452
TF+ +L AC+H+G+V+EGW + N M + I P +HY C++DLLGRAG L +AY++I+
Sbjct: 426 TFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKC 484
Query: 453 MKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512
M V+ VWG+LL AC+ H++V+LGE AA++LF ++P+N G++V LSN+YA A W+ V
Sbjct: 485 MPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRV 544
Query: 513 ERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYV 572
R MK + L K G S VE+RG++ AF VGDK HP++E+I +E + +L+E G+V
Sbjct: 545 AEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604
Query: 573 TDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLI 614
+ + +HD++ EE E TL HSE++A NLR C +CH +LI
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLI 664
Query: 615 SKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
SK+VDREIVVRD+ RFH+FKDG+CSCGDYW
Sbjct: 665 SKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/635 (42%), Positives = 387/635 (60%), Gaps = 35/635 (5%)
Query: 28 LFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH 87
+F++ +++ V SWN+++A ++ G + AL SM + +L P+ T + + SAL
Sbjct: 192 VFDRMPERDLV-SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250
Query: 88 DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSM 147
+ GK+ H A GF V +S+AL+DMY+KCG L AR+LFD + +R N+VSW SM
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER--NVVSWNSM 308
Query: 148 LTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVT 207
+ YVQN+N +EA+L+F++ L + V V++ L AC+ +
Sbjct: 309 IDAYVQNENPKEAMLIFQKML------------DEGVKPTDVSVMGALHACADLGDLERG 356
Query: 208 EGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQN 267
H ++ G D V V N+LI Y + VD + +F + + V+WN++I +AQN
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416
Query: 268 GLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327
G +AL+ F QM +S VK + T +V+ AIA L + K IH V++ L+++V V
Sbjct: 417 GRPIDALNYFSQM-RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFV 475
Query: 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387
T+++DMY KCG + +AR F+ M E++V +W AMI GYG H + AL+LF +M K +
Sbjct: 476 TTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTI 535
Query: 388 RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447
+PN +TF+SV+SACSH+GLV+ G M ++IE ++HYG MVDLLGRAG+L EA+
Sbjct: 536 KPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595
Query: 448 DLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507
D I M VK V+G++LGAC+IHKNV+ E AA++LFEL P++ GYHVLL+NIY A
Sbjct: 596 DFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAAS 655
Query: 508 RWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567
WE V + R M + L KTPG S+VE++ +VH+F G HP +KIY +LE+L ++
Sbjct: 656 MWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
Query: 568 EVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHT 609
E GYV D T+++ V+ + KE L HSEKLA NLRVC DCH
Sbjct: 716 EAGYVPD-TNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHN 774
Query: 610 VIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
+ IS V REIVVRD +RFH+FK+G CSCGDYW
Sbjct: 775 ATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/639 (40%), Positives = 379/639 (59%), Gaps = 44/639 (6%)
Query: 28 LFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI-KSCSAL 86
+F++ +K+ + WN++I+ + VE+++ F + S T +T I + + L
Sbjct: 176 VFDRMPEKDTIL-WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAEL 234
Query: 87 HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS 146
+L G Q H A G + +V + I +YSKCG++ LF E R +IV++ +
Sbjct: 235 QELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREF--RKPDIVAYNA 292
Query: 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNG- 205
M+ GY N +L LFKE +L GA S + S V V+G
Sbjct: 293 MIHGYTSNGETELSLSLFKELML-----SGARLRSSTL-------------VSLVPVSGH 334
Query: 206 --VTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAI 263
+ HG+ +K F S V L Y++ ++ +RK+FD EK +WN++I+
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 264 YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE 323
Y QNGL +A+ +F +M KS + N VT++ +L A A LG L LGK +HD V D E
Sbjct: 395 YTQNGLTEDAISLFREMQKS-EFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES 453
Query: 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMI 383
S+ V T++I MY KCG + AR+ F+ M +KN +W MI+GYG+H + +EAL++FY+M+
Sbjct: 454 SIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEML 513
Query: 384 KAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL 443
+G+ P +TF+ VL ACSHAGLV+EG N+M H + EP V+HY CMVD+LGRAG L
Sbjct: 514 NSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHL 573
Query: 444 KEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503
+ A IE M ++ VW +LLGACRIHK+ +L ++KLFEL+P+N GYHVLLSNI+
Sbjct: 574 QRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIH 633
Query: 504 ANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELN 563
+ + R K R+LAK PG++L+E+ H F GD+ HPQ ++IYE LE+L
Sbjct: 634 SADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLE 693
Query: 564 VKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCG 605
K++E GY + +HDV++EE+E+ +++HSE+LA NLRVC
Sbjct: 694 GKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCL 753
Query: 606 DCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
DCHTV +LISK+ +R IVVRD+ RFH+FKDG+CSCGDYW
Sbjct: 754 DCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 262/640 (40%), Positives = 377/640 (58%), Gaps = 47/640 (7%)
Query: 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAH 96
++ +WN+V++ L + +EAL M + P T + +CS L L +GK+ H
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325
Query: 97 QQAFIFG-FHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQND 155
A G + FV SAL+DMY C ++ R++FD + R I W +M+ GY QN+
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR--KIGLWNAMIAGYSQNE 383
Query: 156 NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215
+ +EALLLF E S + +S +A V+ AC R E HGFV+
Sbjct: 384 HDKEALLLFI-----------GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432
Query: 216 KRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALD 275
KRG D + V NTL+D Y+R G +D++ ++F M ++D VTWN++I Y + +AL
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492
Query: 276 VFDQM----------VKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV 325
+ +M +K N++TL +L + A L L GK IH IK +L V
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552
Query: 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385
VG++++DMY KCG + ++RK F+Q+ +KNV +W +I YGMH +EA+DL M+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQ 612
Query: 386 GVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445
GV+PN +TF+SV +ACSH+G+V EG M ++ +EP +HY C+VDLLGRAG++KE
Sbjct: 613 GVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKE 672
Query: 446 AYDLIEGMKVKADFV---VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502
AY L+ M DF W SLLGA RIH N+++GEIAA+ L +LEPN ++VLL+NI
Sbjct: 673 AYQLMNMM--PRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730
Query: 503 YANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEEL 562
Y++AG W+ R MK + + K PG S +E +VH F+ GD HPQ EK+ YLE L
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETL 790
Query: 563 NVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVC 604
++++ GYV D + V+H+V+++EKE+ L HSEKLA NLRVC
Sbjct: 791 WERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVC 850
Query: 605 GDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
DCH + ISK+VDREI++RD +RFH FK+G CSCGDYW
Sbjct: 851 NDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/656 (38%), Positives = 397/656 (60%), Gaps = 42/656 (6%)
Query: 10 SSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSL 69
+S++ ++ N LF++ + ++ SWN++I+ + G++ EAL + +R +
Sbjct: 189 ASLIHLYSRYKAVGNARILFDE-MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDS 247
Query: 70 TPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARK 129
S + +C+ D + G H + G ++FVS+ LID+Y++ G L D +K
Sbjct: 248 VTVVSL----LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK 303
Query: 130 LFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLE--ESECGGASENSDNVFVD 187
+FD + +R+++SW S++ Y N+ A+ LF+E L + +C +
Sbjct: 304 VFDRM--YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC-----------LT 350
Query: 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRG-FDSEVGVGNTLIDAYARGGHVDVSRKVF 246
+++AS+LS + GF +++G F ++ +GN ++ YA+ G VD +R VF
Sbjct: 351 LISLASILSQLGDIRA---CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVF 407
Query: 247 DGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL 306
+ + D ++WN+II+ YAQNG A+EA+++++ M + ++ N T +VL A + G L
Sbjct: 408 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467
Query: 307 RLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGY 366
R G +H +++K L V V TS+ DMY KCG+++ A F Q+ N W +IA +
Sbjct: 468 RQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH 527
Query: 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG 426
G H +A+ LF +M+ GV+P++ITFV++LSACSH+GLV EG M ++ I P
Sbjct: 528 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 587
Query: 427 VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLF 486
++HYGCMVD+ GRAG+L+ A I+ M ++ D +WG+LL ACR+H NVDLG+IA++ LF
Sbjct: 588 LKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLF 647
Query: 487 ELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGD 546
E+EP + GYHVLLSN+YA+AG+WE V+ RS+ + L KTPG+S +E+ KV F G+
Sbjct: 648 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGN 707
Query: 547 KEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------- 599
+ HP +E++Y L L KL+ +GYV D V+ DV+ +EKE L HSE+LA
Sbjct: 708 QTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIA 767
Query: 600 -----------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVCGDCH+V + ISK+ +REI+VRDS RFH+FK+G+CSCGDYW
Sbjct: 768 TPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/664 (38%), Positives = 391/664 (58%), Gaps = 64/664 (9%)
Query: 31 KYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLH 90
K + + N+ WN++ A D V AL+ + M L L P TFP +KSC+
Sbjct: 92 KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 91 SGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR------------- 137
G+Q H G D++V ++LI MY + G L DA K+FD+ P R
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 138 ----------------IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENS 181
++++VSW +M++GY + N +EAL LFK+ +
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM------------K 259
Query: 182 DNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDV 241
NV D + +V+SAC++ + H ++ GF S + + N LID Y++ G ++
Sbjct: 260 TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 242 SRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301
+ +F+ + KD ++WN++I Y L EAL +F +M++S + N VT+ ++L A A
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP-NDVTMLSILPACA 378
Query: 302 HLGVLRLGKCIH---DQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRS 358
HLG + +G+ IH D+ +K + + + TS+IDMY KCG ++ A + FN + K++ S
Sbjct: 379 HLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437
Query: 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG 418
W AMI G+ MH RA + DLF +M K G++P+ ITFV +LSACSH+G++ G H TM
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497
Query: 419 HEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLG 478
++ + P +EHYGCM+DLLG +G KEA ++I M+++ D V+W SLL AC++H NV+LG
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557
Query: 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGK 538
E A+ L ++EP N G +VLLSNIYA+AGRW +V +TR+L+ ++ + K PG S +E+
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617
Query: 539 VHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKL 598
VH F++GDK HP++ +IY LEE+ V L++ G+V D + V+ ++++E KE LR HSEKL
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 677
Query: 599 A------------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSC 640
A NLRVC +CH +LISK+ REI+ RD RFH+F+DG+CSC
Sbjct: 678 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 737
Query: 641 GDYW 644
DYW
Sbjct: 738 NDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/624 (41%), Positives = 365/624 (58%), Gaps = 39/624 (6%)
Query: 40 SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQA 99
WN + +LA E++ + SM + +P +FP +KSC++L SG+Q H
Sbjct: 20 PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 100 FIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNARE 159
G + FV +ALI MY KCG ++DARK+F+E PQ + V + ++++GY N +
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGF 219
A +F+ V VDSV + ++ C+ + HG +K G
Sbjct: 140 AAYMFRRM------------KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGL 187
Query: 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279
DSEV V N+ I Y + G V+ R++FD M K +TWN++I+ Y+QNGLA + L++++Q
Sbjct: 188 DSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQ 247
Query: 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339
M KS+ V + TL +VL + AHLG ++G + V +V V + I MY +CG
Sbjct: 248 M-KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCG 306
Query: 340 QVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399
+ AR F+ M K++ SWTAMI YGMH L LF MIK G+RP+ FV VLS
Sbjct: 307 NLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLS 366
Query: 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADF 459
ACSH+GL +G M E+ +EPG EHY C+VDLLGRAG+L EA + IE M V+ D
Sbjct: 367 ACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDG 426
Query: 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519
VWG+LLGAC+IHKNVD+ E+A K+ E EPNN GY+VL+SNIY+++ E + R R +M
Sbjct: 427 AVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMM 486
Query: 520 KNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVI 579
+ R K PG+S VE +G+VH FL GD+ H Q E+++ L+EL + E+ +M
Sbjct: 487 RERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA--GNM---- 540
Query: 580 HDVDQ-EEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDR 620
D D+ EE T R HSE+LA NLRVC DCH ++ +SK+VDR
Sbjct: 541 -DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDR 599
Query: 621 EIVVRDSKRFHYFKDGLCSCGDYW 644
+ VVRD+ RFHYFKDG+CSC DYW
Sbjct: 600 QFVVRDASRFHYFKDGVCSCKDYW 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 376/663 (56%), Gaps = 65/663 (9%)
Query: 33 VDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLS-LTPTRSTFPCAIKSCSALHDLHS 91
+ K N F+WN++I A G D V ++ AF M S P + TFP IK+ + + L
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 92 GKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGY 151
G+ H A DVFV+++LI Y CG+L A K+F I ++ ++VSW SM+ G+
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK--DVVSWNSMINGF 207
Query: 152 VQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAH 211
VQ + +AL LFK+ S++V V + VLSAC+++
Sbjct: 208 VQKGSPDKALELFKKM------------ESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 212 GFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTW-------------- 257
++ + + + + N ++D Y + G ++ ++++FD M EKD VTW
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315
Query: 258 -----------------NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI 300
N++I+ Y QNG EAL VF ++ ++K N +TL + L A
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375
Query: 301 AHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWT 360
A +G L LG+ IH + K + + V +++I MY KCG ++ +R+ FN +++++V W+
Sbjct: 376 AQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWS 435
Query: 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHE 420
AMI G MH EA+D+FYKM +A V+PN +TF +V ACSH GLV E + M
Sbjct: 436 AMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
Query: 421 FNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEI 480
+ I P +HY C+VD+LGR+G L++A IE M + VWG+LLGAC+IH N++L E+
Sbjct: 496 YGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEM 555
Query: 481 AAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVH 540
A +L ELEP N G HVLLSNIYA G+WE+V R M+ L K PG S +E+ G +H
Sbjct: 556 ACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIH 615
Query: 541 AFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEE-KEMTLRIHSEKLA 599
FL GD HP EK+Y L E+ KL+ GY +++ V+ +++EE KE +L +HSEKLA
Sbjct: 616 EFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLA 675
Query: 600 ------------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCG 641
NLRVCGDCH+V +LIS++ DREI+VRD RFH+F++G CSC
Sbjct: 676 ICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCN 735
Query: 642 DYW 644
D+W
Sbjct: 736 DFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/693 (35%), Positives = 387/693 (55%), Gaps = 65/693 (9%)
Query: 4 SKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSS 63
S S + +S+V ++ + + L K + V +W SVI +AL +F
Sbjct: 36 SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVE 95
Query: 64 MRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKC-- 121
MR P + FP +KSC+ + DL G+ H G D++ +AL++MY+K
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155
Query: 122 -GELSDARKLFDEIPQRIRN-------------------------------IVSWTSMLT 149
G +FDE+PQR N +VS+ +++
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215
Query: 150 GYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEG 209
GY Q+ +AL + +E + ++ DS ++SVL S +
Sbjct: 216 GYAQSGMYEDALRMVREM------------GTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263
Query: 210 AHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGL 269
HG+VI++G DS+V +G++L+D YA+ ++ S +VF + +D ++WNS++A Y QNG
Sbjct: 264 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGR 323
Query: 270 AAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGT 329
EAL +F QMV + VK AV S+V+ A AHL L LGK +H V++ ++ + +
Sbjct: 324 YNEALRLFRQMV-TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIAS 382
Query: 330 SIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389
+++DMY KCG + ARK F++M + SWTA+I G+ +H EA+ LF +M + GV+P
Sbjct: 383 ALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKP 442
Query: 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDL 449
N + FV+VL+ACSH GLV E W + N+M + + +EHY + DLLGRAGKL+EAY+
Sbjct: 443 NQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNF 502
Query: 450 IEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509
I M V+ VW +LL +C +HKN++L E A+K+F ++ N G +VL+ N+YA+ GRW
Sbjct: 503 ISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRW 562
Query: 510 EDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEV 569
+++ + R M+ + L K P S +E++ K H F+ GD+ HP +KI E+L+ + ++++
Sbjct: 563 KEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKE 622
Query: 570 GYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVI 611
GYV D + V+HDVD+E K L HSE+LA N+R+C DCH I
Sbjct: 623 GYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAI 682
Query: 612 RLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
+ ISK+ +REI+VRD+ RFH+F G CSCGDYW
Sbjct: 683 KFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | ||||||
| 359488559 | 735 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.865 | 0.716 | 0.0 | |
| 449492963 | 1725 | PREDICTED: uncharacterized protein LOC10 | 0.961 | 0.358 | 0.718 | 0.0 | |
| 449455978 | 2598 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.243 | 0.706 | 0.0 | |
| 224060327 | 666 | predicted protein [Populus trichocarpa] | 0.962 | 0.930 | 0.695 | 0.0 | |
| 357508385 | 672 | Pentatricopeptide repeat-containing prot | 0.961 | 0.921 | 0.676 | 0.0 | |
| 297814916 | 659 | binding protein [Arabidopsis lyrata subs | 0.975 | 0.952 | 0.651 | 0.0 | |
| 145332693 | 659 | pentatricopeptide repeat-containing prot | 0.975 | 0.952 | 0.654 | 0.0 | |
| 110736949 | 659 | hypothetical protein [Arabidopsis thalia | 0.975 | 0.952 | 0.652 | 0.0 | |
| 356570245 | 555 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.788 | 0.915 | 0.643 | 0.0 | |
| 357142905 | 669 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.916 | 0.529 | 0.0 |
| >gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/660 (71%), Positives = 554/660 (83%), Gaps = 24/660 (3%)
Query: 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFS 62
SK S+ + ++S N NLTTLFNKYVDK NVFSWNSVIA+LAR GDSVEALRAFS
Sbjct: 82 FSKRRSICAGAVLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFS 141
Query: 63 SMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCG 122
SMRKLSL P RSTFPCAIKSCSAL DLHSG+QAHQQA IFGF D+FVSSAL+DMYSKCG
Sbjct: 142 SMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG 201
Query: 123 ELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSD 182
EL DAR LFDEI R NIVSWTSM+TGYVQND+A ALLLFKEFL+EES SE
Sbjct: 202 ELRDARTLFDEISHR--NIVSWTSMITGYVQNDDAHRALLLFKEFLVEES----GSEGDG 255
Query: 183 NVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242
V VD +A+ SVLSACSRV+ +TEG HGF+IKRGF+ ++GV NTL+DAYA+ G + VS
Sbjct: 256 EVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVS 315
Query: 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302
R+VFDGM E+D ++WNSIIA+YAQNG++ E++++F +MVK ++ NAVTLSAVLLA AH
Sbjct: 316 RRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 375
Query: 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAM 362
G RLGKCIHDQVIKM LE +V VGTSIIDMYCKCG+V++ARKAF++M+EKNV+SW+AM
Sbjct: 376 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 435
Query: 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422
+AGYGMH A+EAL++FY+M AGV+PNYITFVSVL+ACSHAGL++EGWHW M HEF+
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD 495
Query: 423 IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482
+EPGVEHYGCMVDLLGRAG LKEA+DLI+GMK++ DFVVWG+LLGACR+HKNVDLGEI+A
Sbjct: 496 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISA 555
Query: 483 KKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAF 542
+KLFEL+P NCGY+VLLSNIYA+AGRWEDVER R LMKN L K PGFSLV+++G+VH F
Sbjct: 556 RKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVF 615
Query: 543 LVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA--- 599
LVGD+EHPQHEKIYEYLE+L++KLQEVGYV DMTSV+HDV EEKEM LR+HSEKLA
Sbjct: 616 LVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAF 675
Query: 600 ---------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVCGDCHT I+ ISK+VDREIVVRDSKRFH+F+DGLCSCGDYW
Sbjct: 676 GIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/643 (71%), Positives = 547/643 (85%), Gaps = 24/643 (3%)
Query: 20 STNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA 79
S ++NL T F KYVDK+NV SWNSVIADLARGGDSVEALRAFSS+RKL L PTRS+FPC
Sbjct: 1089 SLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT 1148
Query: 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR 139
IKSCSAL DL SG+ +HQQAF+FGF D+FVSSALIDMYSKCG+L DAR LFDEIP +R
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP--LR 1206
Query: 140 NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199
N+VSWTSM+TGYVQN+ A ALLLFK+FL EE+E E+ +NV +DSV + SVLSACS
Sbjct: 1207 NVVSWTSMITGYVQNEQADNALLLFKDFLEEETEV----EDGNNVPLDSVVMVSVLSACS 1262
Query: 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNS 259
RV+ G+TEG HGFV+K+GFD +GVGNTL+DAYA+ G VS+KVFD M EKD ++WNS
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322
Query: 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM 319
+IA+YAQ+GL+ EAL+VF MV+ V+ NAVTLSAVLLA AH G LR GKCIHDQVIKM
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382
Query: 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF 379
DLE +V VGTSIIDMYCKCG+V++A+K F++MKEKNV+SWTAM+AGYGMH RA+EALD+F
Sbjct: 1383 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 1442
Query: 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR 439
YKM++AGV+PNYITFVSVL+ACSHAGLV+EGWHW N M H+++IEPG+EHYGCMVDL GR
Sbjct: 1443 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR 1502
Query: 440 AGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499
AG L EAY+LI+ MK+K DFVVWGSLLGACRIHKNVDLGEIAA+KLFEL+P+NCGY+VLL
Sbjct: 1503 AGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 1562
Query: 500 SNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYL 559
SN+YA+AGRW DVER R LMKNR+L K PGFSLVEL+G+VH FLVGDKEHP HE IY+YL
Sbjct: 1563 SNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYL 1622
Query: 560 EELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NL 601
E+L ++LQ++GYV +MTSV+HDVD+EEKE+ LR+HSEKLA NL
Sbjct: 1623 EKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNL 1682
Query: 602 RVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
RVCGDCHTVI+LISK+V R+ VVRDSKRFH+FKDG+CSCGDYW
Sbjct: 1683 RVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/660 (70%), Positives = 554/660 (83%), Gaps = 27/660 (4%)
Query: 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFS 62
++ +S + V S + HS NL T F KYVDK+NV SWNSVIADLARGGDSVEALRAFS
Sbjct: 1948 ITYNSILFGVPSGREDHS---NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFS 2004
Query: 63 SMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCG 122
S+RKL L PTRS+FPC IKSCSAL DL SG+ +HQQAF+FGF D+FVSSALIDMYSKCG
Sbjct: 2005 SLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 2064
Query: 123 ELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSD 182
+L DAR LFDEIP +RN+VSWTSM+TGYVQN+ A ALLLFK+FL EE+E E+ +
Sbjct: 2065 QLKDARALFDEIP--LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEV----EDGN 2118
Query: 183 NVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242
NV +DSV + SVLSACSRV+ G+TEG HGFV+K+GFD +GVGNTL+DAYA+ G VS
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178
Query: 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302
+KVFD M EKD ++WNS+IA+YAQ+GL+ EAL+VF MV+ V+ NAVTLSAVLLA AH
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 2238
Query: 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAM 362
G LR GKCIHDQVIKMDLE +V VGTSIIDMYCKCG+V++A+K F++MKEKNV+SWTAM
Sbjct: 2239 AGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAM 2298
Query: 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422
+AGYGMH RA+EALD+FYKM++AGV+PNYITFVSVL+ACSHAGLV+EGWHW N M H+++
Sbjct: 2299 VAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYD 2358
Query: 423 IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482
IEPG+EHYGCMVDL GRAG L EAY+LI+ MK+K DFVVWGSLLGACRIHKNVDLGEIAA
Sbjct: 2359 IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 2418
Query: 483 KKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAF 542
+KLFEL+P+NCGY+VLLSN+YA+AGRW DVER R LMKNR+L K PGFSLVEL+G+VH F
Sbjct: 2419 QKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVF 2478
Query: 543 LVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA--- 599
LVGDKEHP HE IY+YLE+L ++LQ++GYV +MTSV+HDVD+EEKE+ LR+HSEKLA
Sbjct: 2479 LVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAF 2538
Query: 600 ---------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVCGDCHTVI+LISK+V R+ VVRDSKRFH+FKDG+CSCGDYW
Sbjct: 2539 GVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa] gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/643 (69%), Positives = 535/643 (83%), Gaps = 23/643 (3%)
Query: 20 STNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA 79
+TNTNLTTLFNKY D+ +V+SWNS+IA+LARGGDS E+LRAFS MRKL + P RSTFPCA
Sbjct: 29 ATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCA 88
Query: 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR 139
IKSCSAL DL+SGKQAHQQA +FGF D+FVSSALIDMYSKCG+LS+AR LFDEIP+R
Sbjct: 89 IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRR-- 146
Query: 140 NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199
NIV+WTS++TGYVQND+A EAL++FKEFL E+SE G + VDSVA+ SVLSACS
Sbjct: 147 NIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTS---VDSVAMISVLSACS 203
Query: 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNS 259
RV+ V+EG HG IK G D +GV NTL+DAYA+ G V +SRKVFD M EKD V+WNS
Sbjct: 204 RVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNS 263
Query: 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM 319
+IA+YAQNGL+ +A +VF M+K+ K N VTLS +LLA AH G LR+G C+HDQVIKM
Sbjct: 264 MIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM 323
Query: 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF 379
+VI+ TSIIDMYCKCGQ ++AR AF+ MKEKNVRSWTAMIAGYGMH AREALD+F
Sbjct: 324 GYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVF 383
Query: 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR 439
Y+MI AGV+PNYITF+SVL+ACSHAG ++EGW W N M HE+N+EPGVEHYGCMVDLLGR
Sbjct: 384 YQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGR 443
Query: 440 AGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499
AG +KEAY+LI+ MKV+ DFV+WGSLL ACRIHK+V+L EI+A++LF+L+P+NCGY+VLL
Sbjct: 444 AGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLL 503
Query: 500 SNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYL 559
+NIYA+AGRW+DVER R L+K+R L K PG+SLVEL+G+VH FLVGDKEHPQHEKIY+YL
Sbjct: 504 ANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYL 563
Query: 560 EELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NL 601
EEL+VKLQE GYV +M SV+HDVD+EEKEM +R+HSEKLA NL
Sbjct: 564 EELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNL 623
Query: 602 RVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
RVCGDCHTVI+LISK+V REI+VRD+KRFH+FKDGLCSCGDYW
Sbjct: 624 RVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/640 (67%), Positives = 530/640 (82%), Gaps = 21/640 (3%)
Query: 23 TNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82
NL ++F KYVDK +V+SWNS+IAD AR GDS++AL AFSSMRKLSL P RSTFPC IKS
Sbjct: 36 ANLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKS 95
Query: 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIV 142
CS+L+DL +GKQ HQQAF+FG+ D+FV+SALIDMYSKCG L+DARKLFDEIP+R N+V
Sbjct: 96 CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPER--NVV 153
Query: 143 SWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT 202
SWTSM++GYVQN+ AREA+ LFKEFLL + E V VDSV + V+SAC+RV
Sbjct: 154 SWTSMISGYVQNERAREAVFLFKEFLLVD-ETDYDEIVGVGVGVDSVLLGCVISACARVC 212
Query: 203 VNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIA 262
V VTE HG +K+GF+ + VGNTL+DAYA+ G + VSRKVFDGM E D +WNS+IA
Sbjct: 213 VKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIA 272
Query: 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322
+YAQNGL+ EA +F MVK +V+ NAVTLSAVLLA AH G L++GKCIHDQV+KM+LE
Sbjct: 273 VYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELE 332
Query: 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKM 382
++++VGTSI+DMYCKCG+V++ARKAF+++K KNV+SWT M+AGYGMH +EA+ +FY+M
Sbjct: 333 DNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEM 392
Query: 383 IKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442
I+ G++PNYITFVSVL+ACSHAGL++EGWHW N M EF++EPG+EHY CMVDLLGRAG
Sbjct: 393 IRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGY 452
Query: 443 LKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502
LKEAY LI+ MKVK DF+VWGSLLGACRIHKNV+LGEI+A+KLF+L+P+NCGY+VLLSNI
Sbjct: 453 LKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNI 512
Query: 503 YANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEEL 562
YA+AGRW+DVER R LMKN L KTPG+S+VE +G+VH FLVGDKEHPQHEKIYEYL+EL
Sbjct: 513 YADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDEL 572
Query: 563 NVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVC 604
NVKLQEVGY+ ++TSV++DVD EEK M LR+HSEKLA NLR+C
Sbjct: 573 NVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRIC 632
Query: 605 GDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
GDCH I+LISK+V+REIV+RDSKRFH+FKDGLCSCGDYW
Sbjct: 633 GDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/657 (65%), Positives = 526/657 (80%), Gaps = 29/657 (4%)
Query: 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL 67
SVS ++ + ++H+ NLTTLFN+YVDK +VFSWNSVIADLAR GDS EALRAFSSMRKL
Sbjct: 12 SVSRLL-HTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKL 70
Query: 68 SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDA 127
SL PTRS+FPCAIK+CS+L D+ SGKQ HQQAF+FG+ D+FVSSALI MYS CG+L DA
Sbjct: 71 SLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130
Query: 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD 187
RK+FDEIP+R NIVSWTSM+ GY N NA +A+ LFK+ L+EE++ + +F+D
Sbjct: 131 RKVFDEIPKR--NIVSWTSMIRGYDLNGNALDAVSLFKDLLIEEND------DDATMFLD 182
Query: 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH--VDVSRKV 245
S+ + SV+SACSRV G+TE H FVIKRGFD V VGNTL+DAYA+GG V V+RK+
Sbjct: 183 SMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242
Query: 246 FDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV 305
FD +++KD V++NSI+++YAQ+G++ EA DVF +++K V N +TLS VLLA++H G
Sbjct: 243 FDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGA 302
Query: 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAG 365
LR+GKCIHDQVI+M LE+ VIVGTSIIDMYCKCG+V+ AR AF++MK KNVRSWTAMIAG
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAG 362
Query: 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425
YGMH A +AL+LF MI +GVRPNYITFVSVL+ACSHAGL GWHW N M F +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEP 422
Query: 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485
G+EHYGCMVDLLGRAG L++AYDLI+ MK++ D ++W SLL ACRIHKNV+L EI+ +L
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARL 482
Query: 486 FELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVG 545
FEL+P+NCGY++LLS+IYA++GRW+DVER R MKNR L K PGFSL+EL G+VH FL+G
Sbjct: 483 FELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 546 DKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------ 599
D+EHPQ EKIYE+L ELN KL E GYV++ +SV HDVD+EEKEMTLR+HSEKLA
Sbjct: 543 DEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIM 602
Query: 600 ------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVC DCH VI+LISK+VDRE VVRD+KRFH+FKDG CSCGDYW
Sbjct: 603 NTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26782, mitochondrial; Flags: Precursor gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/657 (65%), Positives = 529/657 (80%), Gaps = 29/657 (4%)
Query: 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL 67
SVS ++ + ++H+ NLTTLFN+YVDK +VFSWNSVIADLAR GDS EAL AFSSMRKL
Sbjct: 12 SVSRLL-HTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL 70
Query: 68 SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDA 127
SL PTRS+FPCAIK+CS+L D+ SGKQ HQQAF+FG+ D+FVSSALI MYS CG+L DA
Sbjct: 71 SLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130
Query: 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD 187
RK+FDEIP+R NIVSWTSM+ GY N NA +A+ LFK+ L++E++ + D +F+D
Sbjct: 131 RKVFDEIPKR--NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEND------DDDAMFLD 182
Query: 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH--VDVSRKV 245
S+ + SV+SACSRV G+TE H FVIKRGFD V VGNTL+DAYA+GG V V+RK+
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242
Query: 246 FDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV 305
FD +++KD V++NSI+++YAQ+G++ EA +VF ++VK+ V NA+TLS VLLA++H G
Sbjct: 243 FDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGA 302
Query: 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAG 365
LR+GKCIHDQVI+M LE+ VIVGTSIIDMYCKCG+V+ ARKAF++MK KNVRSWTAMIAG
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425
YGMH A +AL+LF MI +GVRPNYITFVSVL+ACSHAGL EGW W N M F +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485
G+EHYGCMVDLLGRAG L++AYDLI+ MK+K D ++W SLL ACRIHKNV+L EI+ +L
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARL 482
Query: 486 FELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVG 545
FEL+ +NCGY++LLS+IYA+AGRW+DVER R +MKNR L K PGFSL+EL G+VH FL+G
Sbjct: 483 FELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 546 DKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------ 599
D+EHPQ EKIYE+L ELN KL E GYV++ +SV HDVD+EEKEMTLR+HSEKLA
Sbjct: 543 DEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIM 602
Query: 600 ------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVC DCH VI+LISK+VDRE VVRD+KRFH+FKDG CSCGDYW
Sbjct: 603 NTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/657 (65%), Positives = 529/657 (80%), Gaps = 29/657 (4%)
Query: 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL 67
SVS ++ + ++H+ NLTTLFN+YVDK +VFSWNSVIADLAR GDS EAL AFSSMRKL
Sbjct: 12 SVSRLL-HTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL 70
Query: 68 SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDA 127
SL PTRS+FPCAIK+CS+L D+ SGKQ HQQAF+FG+ D+FVSSALI MYS CG+L DA
Sbjct: 71 SLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130
Query: 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD 187
RK+FDEIP+R +IVSWTSM+ GY N NA +A+ LFK+ L++E++ + D +F+D
Sbjct: 131 RKVFDEIPKR--DIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEND------DDDAMFLD 182
Query: 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH--VDVSRKV 245
S+ + SV+SACSRV G+TE H FVIKRGFD V VGNTL+DAYA+GG V V+RK+
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242
Query: 246 FDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV 305
FD +++KD V++NSI+++YAQ+G++ EA +VF ++VK+ V NA+TLS VLLA++H G
Sbjct: 243 FDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGA 302
Query: 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAG 365
LR+GKCIHDQVI+M LE+ VIVGTSIIDMYCKCG+V+ ARKAF++MK KNVRSWTAMIAG
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425
YGMH A +AL+LF MI +GVRPNYITFVSVL+ACSHAGL EGW W N M F +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485
G+EHYGCMVDLLGRAG L++AYDLI+ MK+K D ++W SLL ACRIHKNV+L EI+ +L
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARL 482
Query: 486 FELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVG 545
FEL+ +NCGY++LLS+IYA+AGRW+DVER R +MKNR L K PGFSL+EL G+VH FL+G
Sbjct: 483 FELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIG 542
Query: 546 DKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------ 599
D+EHPQ EKIYE+L ELN KL E GYV++ +SV HDVD+EEKEMTLR+HSEKLA
Sbjct: 543 DEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIM 602
Query: 600 ------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVC DCH VI+LISK+VDRE VVRD+KRFH+FKDG CSCGDYW
Sbjct: 603 NTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/538 (64%), Positives = 426/538 (79%), Gaps = 30/538 (5%)
Query: 125 SDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNV 184
+D+R LFDEIP R ++VSWTS++ G VQND AR+A+ +FKE L+EES G+ E+ D V
Sbjct: 30 NDSRHLFDEIPDR--SVVSWTSIIAGCVQNDRARDAVRVFKELLVEES---GSVESEDGV 84
Query: 185 FVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRK 244
FVDSV + V+SA S++ GVTEG HG VIKRGF+ VGVGNTL+DAYA+ G + V+ K
Sbjct: 85 FVDSVLLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-K 143
Query: 245 VFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304
VFDGM E D WNS+IA YAQNGL+AEA VF MVKS + + NAV + L G
Sbjct: 144 VFDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLS-----G 198
Query: 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIA 364
L+LGKCIH QVIKMDLE+SV VGTSI+D+YCKC +V++ARKAF+ MK KNV+SWTAM+A
Sbjct: 199 ALQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVA 258
Query: 365 GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424
GYGMH RA+EA+++FYKMI++GV+PNYITFVSVL+ACSHAG+++EG HW N M EF +E
Sbjct: 259 GYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVE 318
Query: 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKK 484
PG+EHY CMVDLLGRAG L Y LI+ M K DF++WGSLLGACRIHKNV+LGEI+A+K
Sbjct: 319 PGIEHYLCMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARK 377
Query: 485 LFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLV 544
LFEL+ +NCGY+VLLSNIYA+AGRW++VER R LMK+R L K PGFS+VEL+G++H LV
Sbjct: 378 LFELDXSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLV 437
Query: 545 GDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA----- 599
GDKEHPQHEKIYEYL++ NVKLQE+GY+ + V+HDVD+EEK M LR+HSEKLA
Sbjct: 438 GDKEHPQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGI 497
Query: 600 -------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLR+CGDC+ VI+LI KVV+REIVVRDSKRFH+FK+G CSCGDYW
Sbjct: 498 MNSVPGSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/648 (52%), Positives = 447/648 (68%), Gaps = 35/648 (5%)
Query: 19 HSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC 78
H++ +L LF + VD + SW++ + DL GD V AL AF++ +++ R P
Sbjct: 35 HTSTPSLRALFLRAVDPSRPASWSAAVGDLLSSGDPVAALAAFAAALRVNPAALRPALPP 94
Query: 79 AIKSCSALHDLHSGKQAHQQAFIFG-FHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR 137
A ++ +A L +G+Q H A G F D F +SAL+ MY+ C DARK FDEIP
Sbjct: 95 AFRAAAAATSLAAGRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSP 154
Query: 138 IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA 197
N V T+M +GYV+N+ +L LF++ + S VD A SA
Sbjct: 155 --NPVIITAMASGYVRNNLVYPSLALFRKLIASGSATA----------VDEAAALVAFSA 202
Query: 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDV--SRKVFDGMIEKDAV 255
+R+ G+T H V+K G D + GV NT++DAYA+GG D+ +RKVFD M EKD V
Sbjct: 203 SARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVV 261
Query: 256 TWNSIIAIYAQNGLAAEALDVFDQMVK-STDVKCNAVTLSAVLLAIAHLGVLRLGKCIHD 314
+WNS+IA+YAQNG++A+AL ++ +M+ S +KCNAVTLSA+LLA AH G ++ GKCIH+
Sbjct: 262 SWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHN 321
Query: 315 QVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRARE 374
QV++M LEE+V VGTS++DMY KCG+V++ARKAF ++KEKN+ SW+AMI GYGMH +E
Sbjct: 322 QVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQE 381
Query: 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434
ALD+F +M ++G PNYITF+SVL+ACSHAGL+ +G +W N M F IEPGVEHYGCMV
Sbjct: 382 ALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMV 441
Query: 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494
DLLGRAG L EAY LI+ MKVK D +WG+LL ACRIHKNV+L EI+AK+LFEL+ NCG
Sbjct: 442 DLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCG 501
Query: 495 YHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEK 554
Y+VLLSNIYA AG W+DVER R L+K R + K PG+S VEL+G+ H F VGDK HPQH++
Sbjct: 502 YYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKE 561
Query: 555 IYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA--------------- 599
IY YL +L K+QE GYV + SV+HD+D+EEK L IHSEKLA
Sbjct: 562 IYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIH 621
Query: 600 ---NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644
NLRVC DCHT I+LI+K+ REI+VRD +RFH+FKDG CSCGDYW
Sbjct: 622 VIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 644 | ||||||
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.892 | 0.872 | 0.656 | 3.3e-230 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.762 | 0.662 | 0.400 | 1.7e-137 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.858 | 0.683 | 0.405 | 4.4e-126 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.850 | 0.615 | 0.389 | 1.7e-124 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.746 | 0.565 | 0.391 | 5.1e-122 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.636 | 0.650 | 0.428 | 6.5e-122 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.785 | 0.614 | 0.385 | 2.8e-120 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.906 | 0.937 | 0.415 | 3.2e-120 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.869 | 0.658 | 0.363 | 6.5e-120 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.625 | 0.530 | 0.412 | 2.8e-119 |
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2026 (718.2 bits), Expect = 3.3e-230, Sum P(2) = 3.3e-230
Identities = 384/585 (65%), Positives = 471/585 (80%)
Query: 17 DKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTF 76
++H+ NLTTLFN+YVDK +VFSWNSVIADLAR GDS EAL AFSSMRKLSL PTRS+F
Sbjct: 20 ERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSF 79
Query: 77 PCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQ 136
PCAIK+CS+L D+ SGKQ HQQAF+FG+ D+FVSSALI MYS CG+L DARK+FDEIP+
Sbjct: 80 PCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139
Query: 137 RIRNIVSWTSMLTGYVQNDNARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLS 196
R NIVSWTSM+ GY N NA +++ D +F+DS+ + SV+S
Sbjct: 140 R--NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDE------NDDDDAMFLDSMGLVSVIS 191
Query: 197 ACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH--VDVSRKVFDGMIEKDA 254
ACSRV G+TE H FVIKRGFD V VGNTL+DAYA+GG V V+RK+FD +++KD
Sbjct: 192 ACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR 251
Query: 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHD 314
V++NSI+++YAQ+G++ EA +VF ++VK+ V NA+TLS VLLA++H G LR+GKCIHD
Sbjct: 252 VSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHD 311
Query: 315 QVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRARE 374
QVI+M LE+ VIVGTSIIDMYCKCG+V+ ARKAF++MK KNVRSWTAMIAGYGMH A +
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371
Query: 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434
AL+LF MI +GVRPNYITFVSVL+ACSHAGL EGW W N M F +EPG+EHYGCMV
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431
Query: 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494
DLLGRAG L++AYDLI+ MK+K D ++W SLL ACRIHKNV+L EI+ +LFEL+ +NCG
Sbjct: 432 DLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCG 491
Query: 495 YHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEK 554
Y++LLS+IYA+AGRW+DVER R +MKNR L K PGFSL+EL G+VH FL+GD+EHPQ EK
Sbjct: 492 YYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREK 551
Query: 555 IYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
IYE+L ELN KL E GYV++ +SV HDVD+EEKEMTLR+HSEKLA
Sbjct: 552 IYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLA 596
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.7e-137, Sum P(3) = 1.7e-137
Identities = 204/509 (40%), Positives = 318/509 (62%)
Query: 93 KQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYV 152
+ AH+ F HRDV +ALI Y+ G + +A+KLFDEIP ++++VSW +M++GY
Sbjct: 186 EDAHK-VFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP--VKDVVSWNAMISGYA 242
Query: 153 QNDNARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHG 212
+ N + NV D + +V+SAC++ + H
Sbjct: 243 ETGNYKEALELFKDMMKT------------NVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 213 FVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAE 272
++ GF S + + N LID Y++ G ++ + +F+ + KD ++WN++I Y L E
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350
Query: 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM--DLEESVIVGTS 330
AL +F +M++S + N VT+ ++L A AHLG + +G+ IH + K + + + TS
Sbjct: 351 ALLLFQEMLRSGETP-NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 409
Query: 331 IIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390
+IDMY KCG ++ A + FN + K++ SW AMI G+ MH RA + DLF +M K G++P+
Sbjct: 410 LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPD 469
Query: 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450
ITFV +LSACSH+G++ G H TM ++ + P +EHYGCM+DLLG +G KEA ++I
Sbjct: 470 DITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMI 529
Query: 451 EGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510
M+++ D V+W SLL AC++H NV+LGE A+ L ++EP N G +VLLSNIYA+AGRW
Sbjct: 530 NMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWN 589
Query: 511 DVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVG 570
+V +TR+L+ ++ + K PG S +E+ VH F++GDK HP++ +IY LEE+ V L++ G
Sbjct: 590 EVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAG 649
Query: 571 YVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
+V D + V+ ++++E KE LR HSEKLA
Sbjct: 650 FVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 233/574 (40%), Positives = 345/574 (60%)
Query: 28 LFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH 87
+F++ +++ V SWN+++A ++ G + AL SM + +L P+ T + + SAL
Sbjct: 192 VFDRMPERDLV-SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250
Query: 88 DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSM 147
+ GK+ H A GF V +S+AL+DMY+KCG L AR+LFD + +R N+VSW SM
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER--NVVSWNSM 308
Query: 148 LTGYVQNDNARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSRVTVNGVT 207
+ YVQN+N + + V V++ L AC+ + +
Sbjct: 309 IDAYVQNENPKEAMLIFQKML------------DEGVKPTDVSVMGALHACA--DLGDLE 354
Query: 208 EGA--HGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYA 265
G H ++ G D V V N+LI Y + VD + +F + + V+WN++I +A
Sbjct: 355 RGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFA 414
Query: 266 QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV 325
QNG +AL+ F QM +S VK + T +V+ AIA L + K IH V++ L+++V
Sbjct: 415 QNGRPIDALNYFSQM-RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473
Query: 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385
V T+++DMY KCG + +AR F+ M E++V +W AMI GYG H + AL+LF +M K
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKG 533
Query: 386 GVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445
++PN +TF+SV+SACSH+GLV+ G M ++IE ++HYG MVDLLGRAG+L E
Sbjct: 534 TIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNE 593
Query: 446 AYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505
A+D I M VK V+G++LGAC+IHKNV+ E AA++LFEL P++ GYHVLL+NIY
Sbjct: 594 AWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRA 653
Query: 506 AGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVK 565
A WE V + R M + L KTPG S+VE++ +VH+F G HP +KIY +LE+L
Sbjct: 654 ASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICH 713
Query: 566 LQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
++E GYV D T+++ V+ + KE L HSEKLA
Sbjct: 714 IKEAGYVPD-TNLVLGVENDVKEQLLSTHSEKLA 746
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 1.7e-124, Sum P(2) = 1.7e-124
Identities = 225/577 (38%), Positives = 334/577 (57%)
Query: 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAH 96
++ +WN+V++ L + +EAL M + P T + +CS L L +GK+ H
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325
Query: 97 QQAFIFG-FHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQND 155
A G + FV SAL+DMY C ++ R++FD + R I W +M+ GY QN+
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR--KIGLWNAMIAGYSQNE 383
Query: 156 NARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215
+ + E S + +S +A V+ AC R E HGFV+
Sbjct: 384 HDKEALLLFI-----------GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432
Query: 216 KRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALD 275
KRG D + V NTL+D Y+R G +D++ ++F M ++D VTWN++I Y + +AL
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492
Query: 276 VFDQM----------VKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV 325
+ +M +K N++TL +L + A L L GK IH IK +L V
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552
Query: 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385
VG++++DMY KCG + ++RK F+Q+ +KNV +W +I YGMH +EA+DL M+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQ 612
Query: 386 GVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445
GV+PN +TF+SV +ACSH+G+V EG M ++ +EP +HY C+VDLLGRAG++KE
Sbjct: 613 GVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKE 672
Query: 446 AYDLIEGMKVKADFV---VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502
AY L+ M DF W SLLGA RIH N+++GEIAA+ L +LEPN ++VLL+NI
Sbjct: 673 AYQLMNMMP--RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730
Query: 503 YANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEEL 562
Y++AG W+ R MK + + K PG S +E +VH F+ GD HPQ EK+ YLE L
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETL 790
Query: 563 NVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
++++ GYV D + V+H+V+++EKE+ L HSEKLA
Sbjct: 791 WERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLA 827
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 5.1e-122, Sum P(3) = 5.1e-122
Identities = 199/508 (39%), Positives = 294/508 (57%)
Query: 106 RDVFVSSALIDMYSKCGELSDARKLFDEIPQ-RIR-NIVSWTSMLTGYVQNDNARXXXXX 163
+DV +A++ YS+ G DA +LF+++ + +I+ ++V+W++ ++GY Q
Sbjct: 293 KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRG-------- 344
Query: 164 XXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIK------- 216
C S + + V + SVLS C+ V + H + IK
Sbjct: 345 --LGYEALGVC--RQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400
Query: 217 RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI--EKDAVTWNSIIAIYAQNGLAAEAL 274
G E V N LID YA+ VD +R +FD + E+D VTW +I Y+Q+G A +AL
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460
Query: 275 DVFDQMVKST-DVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE-SVIVGTSII 332
++ +M + + NA T+S L+A A L LR+GK IH ++ + V +I
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLI 520
Query: 333 DMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392
DMY KCG + AR F+ M KN +WT+++ GYGMH EAL +F +M + G + + +
Sbjct: 521 DMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 580
Query: 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452
T + VL ACSH+G++ +G + N M F + PG EHY C+VDLLGRAG+L A LIE
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640
Query: 453 MKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512
M ++ VVW + L CRIH V+LGE AA+K+ EL N+ G + LLSN+YANAGRW+DV
Sbjct: 641 MPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDV 700
Query: 513 ERTRSLMKNRRLAKTPGFSLVE-LRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGY 571
R RSLM+++ + K PG S VE ++G F VGDK HP ++IY+ L + +++++GY
Sbjct: 701 TRIRSLMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGY 759
Query: 572 VTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
V + +HDVD EEK+ L HSEKLA
Sbjct: 760 VPETGFALHDVDDEEKDDLLFEHSEKLA 787
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 6.5e-122, Sum P(3) = 6.5e-122
Identities = 180/420 (42%), Positives = 276/420 (65%)
Query: 182 DNVFVDSVAIASVLSACSRVTVNGVTEGA--HGFVIKRGFDSEVGVGNTLIDAYARGGHV 239
DNV + +SVL +C NG+++ H +IK G +S+V V + LID +A+ G
Sbjct: 156 DNVRPNVYTYSSVLRSC-----NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEP 210
Query: 240 DVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLA 299
+ + VFD M+ DA+ WNSII +AQN + AL++F +M ++ + A TL++VL A
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA-TLTSVLRA 269
Query: 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSW 359
L +L LG H ++K D + +I+ +++DMYCKCG ++ A + FNQMKE++V +W
Sbjct: 270 CTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327
Query: 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGH 419
+ MI+G + ++EAL LF +M +G +PNYIT V VL ACSHAGL+++GW++ +M
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387
Query: 420 EFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGE 479
+ I+P EHYGCM+DLLG+AGKL +A L+ M+ + D V W +LLGACR+ +N+ L E
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447
Query: 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKV 539
AAKK+ L+P + G + LLSNIYAN+ +W+ VE R+ M++R + K PG S +E+ ++
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Query: 540 HAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
HAF++GD HPQ ++ + L +L +L +GYV + V+ D++ E+ E +LR HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
Identities = 201/521 (38%), Positives = 315/521 (60%)
Query: 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR 139
+ +C+ D + G H + G ++FVS+ LID+Y++ G L D +K+FD + +R
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM--YVR 311
Query: 140 NIVSWTSMLTGYVQNDNARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACS 199
+++SW S++ Y N+ D + + +++AS+LS
Sbjct: 312 DLISWNSIIKAYELNEQPLRAISLFQEMRLSRI-------QPDCLTL--ISLASILSQLG 362
Query: 200 RVTVNGVTEGAHGFVIKRG-FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWN 258
+ GF +++G F ++ +GN ++ YA+ G VD +R VF+ + D ++WN
Sbjct: 363 DIRA---CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419
Query: 259 SIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIK 318
+II+ YAQNG A+EA+++++ M + ++ N T +VL A + G LR G +H +++K
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479
Query: 319 MDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDL 378
L V V TS+ DMY KCG+++ A F Q+ N W +IA +G H +A+ L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539
Query: 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438
F +M+ GV+P++ITFV++LSACSH+GLV EG M ++ I P ++HYGCMVD+ G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599
Query: 439 RAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498
RAG+L+ A I+ M ++ D +WG+LL ACR+H NVDLG+IA++ LFE+EP + GYHVL
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659
Query: 499 LSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEY 558
LSN+YA+AG+WE V+ RS+ + L KTPG+S +E+ KV F G++ HP +E++Y
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719
Query: 559 LEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
L L KL+ +GYV D V+ DV+ +EKE L HSE+LA
Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLA 760
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 259/623 (41%), Positives = 361/623 (57%)
Query: 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAF 100
WN + +LA E++ + SM + +P +FP +KSC++L SG+Q H
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 101 IFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNARXX 160
G + FV +ALI MY KCG ++DARK+F+E PQ + V + ++++GY N
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 161 XXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFD 220
G S VDSV + ++ C+ + HG +K G D
Sbjct: 141 AYMFRRMKET-----GVS-------VDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLD 188
Query: 221 SEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQM 280
SEV V N+ I Y + G V+ R++FD M K +TWN++I+ Y+QNGLA + L++++QM
Sbjct: 189 SEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQM 248
Query: 281 VKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340
KS+ V + TL +VL + AHLG ++G + V +V V + I MY +CG
Sbjct: 249 -KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGN 307
Query: 341 VDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400
+ AR F+ M K++ SWTAMI YGMH L LF MIK G+RP+ FV VLSA
Sbjct: 308 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSA 367
Query: 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFV 460
CSH+GL +G M E+ +EPG EHY C+VDLLGRAG+L EA + IE M V+ D
Sbjct: 368 CSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGA 427
Query: 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520
VWG+LLGAC+IHKNVD+ E+A K+ E EPNN GY+VL+SNIY+++ E + R R +M+
Sbjct: 428 VWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMR 487
Query: 521 NRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIH 580
R K PG+S VE +G+VH FL GD+ H Q E+++ L+EL + E+ +M
Sbjct: 488 ERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA--GNM----- 540
Query: 581 DVDQ-EEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDRE 621
D D+ EE T R HSE+LA NLRVC DCH ++ +SK+VDR+
Sbjct: 541 DCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQ 600
Query: 622 IVVRDSKRFHYFKDGLCSCGDYW 644
VVRD+ RFHYFKDG+CSC DYW
Sbjct: 601 FVVRDASRFHYFKDGVCSCKDYW 623
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 212/583 (36%), Positives = 329/583 (56%)
Query: 24 NLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83
N +F+K + + NV +W +I + G EA+R F M + T +C
Sbjct: 221 NAYKVFDK-MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279
Query: 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKC---GELSDARKLFDEIPQRIRN 140
+ L +L GKQ H A G DV S L+DMY+KC G + D RK+FD + +
Sbjct: 280 AELENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDH--S 335
Query: 141 IVSWTSMLTGYVQNDNARXXXXXXXXXXXXXXXCGGASENSDNVFVDSVAIASVLSACSR 200
++SWT+++TGY++N N G E + F +S AC
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQ----GHVEPNHFTF------SSAFKACGN 385
Query: 201 VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSI 260
++ V + G KRG S V N++I + + ++ +++ F+ + EK+ V++N+
Sbjct: 386 LSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTF 445
Query: 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD 320
+ +N +A + ++ + ++ +A T +++L +A++G +R G+ IH QV+K+
Sbjct: 446 LDGTCRNLNFEQAFKLLSEITER-ELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG 504
Query: 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFY 380
L + V ++I MY KCG +D A + FN M+ +NV SWT+MI G+ H A L+ F
Sbjct: 505 LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFN 564
Query: 381 KMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA 440
+MI+ GV+PN +T+V++LSACSH GLV EGW N+M + I+P +EHY CMVDLL RA
Sbjct: 565 QMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRA 624
Query: 441 GKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500
G L +A++ I M +AD +VW + LGACR+H N +LG++AA+K+ EL+PN ++ LS
Sbjct: 625 GLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLS 684
Query: 501 NIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLE 560
NIYA AG+WE+ R MK R L K G S +E+ K+H F VGD HP +IY+ L+
Sbjct: 685 NIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELD 744
Query: 561 ELNVKLQEVGYVTDMTSVIHDVDQE----EKEMTLRIHSEKLA 599
L +++ GYV D V+H +++E EKE L HSEK+A
Sbjct: 745 RLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 2.8e-119, Sum P(3) = 2.8e-119
Identities = 170/412 (41%), Positives = 269/412 (65%)
Query: 194 VLSACSRVTVNGVTEGAHGFV-IKRGFDS-EVGVGNTLIDAYARGGHVDVSRKVFD---- 247
V+SA + + G + +G + + F+ E GV N I +R G VD + ++F+
Sbjct: 289 VISAM--IDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKE 346
Query: 248 GMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLR 307
+E + V+W SIIA AQNG EAL++F +M + VK N VT+ ++L A ++ L
Sbjct: 347 QTMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNIAALG 405
Query: 308 LGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYG 367
G+ H +++ L ++V VG+++IDMY KCG+++L++ FN M KN+ W +++ G+
Sbjct: 406 HGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFS 465
Query: 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV 427
MH +A+E + +F +++ ++P++I+F S+LSAC GL EGW + M E+ I+P +
Sbjct: 466 MHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRL 525
Query: 428 EHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487
EHY CMV+LLGRAGKL+EAYDLI+ M + D VWG+LL +CR+ NVDL EIAA+KLF
Sbjct: 526 EHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585
Query: 488 LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDK 547
LEP N G +VLLSNIYA G W +V+ R+ M++ L K PG S ++++ +V+ L GDK
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDK 645
Query: 548 EHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA 599
HPQ ++I E ++E++ ++++ G+ ++ +HDV+++E+E L HSEKLA
Sbjct: 646 SHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLA 697
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LW32 | PP258_ARATH | No assigned EC number | 0.6544 | 0.9751 | 0.9529 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 644 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-171 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-155 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-81 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-46 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-36 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 4e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 510 bits (1314), Expect = e-171
Identities = 244/621 (39%), Positives = 370/621 (59%), Gaps = 36/621 (5%)
Query: 40 SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQA 99
SWN++I+ G+ +E L F +MR+LS+ P T I +C L D G++ H
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 100 FIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNARE 159
GF DV V ++LI MY G +A K+F + ++ VSWT+M++GY +N +
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNGLPDK 372
Query: 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGF 219
AL + L+E+ DNV D + IASVLSAC+ + V H ++G
Sbjct: 373 ALETYA--LMEQ----------DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279
S V V N LI+ Y++ +D + +VF + EKD ++W SIIA N EAL F Q
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339
M+ +K N+VTL A L A A +G L GK IH V++ + + +++D+Y +CG
Sbjct: 481 ML--LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 340 QVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399
+++ A FN EK+V SW ++ GY H + A++LF +M+++GV P+ +TF+S+L
Sbjct: 539 RMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
Query: 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADF 459
ACS +G+V +G + ++M +++I P ++HY C+VDLLGRAGKL EAY+ I M + D
Sbjct: 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
Query: 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519
VWG+LL ACRIH++V+LGE+AA+ +FEL+PN+ GY++LL N+YA+AG+W++V R R M
Sbjct: 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 520 KNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVI 579
+ L PG S VE++GKVHAFL D+ HPQ ++I LE K++ G +S +
Sbjct: 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777
Query: 580 HDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDRE 621
+++ + ++ HSE+LA NL +C +CH ++ ISK+V RE
Sbjct: 778 DEIEVSKDDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRRE 836
Query: 622 IVVRDSKRFHYFKDGLCSCGD 642
I VRD+++FH+FKDG CSCGD
Sbjct: 837 ISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 464 bits (1196), Expect = e-155
Identities = 228/621 (36%), Positives = 353/621 (56%), Gaps = 34/621 (5%)
Query: 43 SVIADLARGGDSVEALRAFSSMR-KLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFI 101
S I L G EAL F + T ST+ +++C AL + K +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 102 FGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREAL 161
GF D ++ + ++ M+ KCG L DAR+LFDE+P+R N+ SW +++ G V N REA
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER--NLASWGTIIGGLVDAGNYREAF 209
Query: 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS 221
LF+E + S+ FV + ++ L + + H V+K G
Sbjct: 210 ALFREMWEDGSDAE------PRTFVVMLRASAGLGSAR------AGQQLHCCVLKTGVVG 257
Query: 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281
+ V LID Y++ G ++ +R VFDGM EK V WNS++A YA +G + EAL ++ +M
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 282 KSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341
S V + T S ++ + L +L K H +I+ ++ T+++D+Y K G++
Sbjct: 318 DS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 342 DLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401
+ AR F++M KN+ SW A+IAGYG H R +A+++F +MI GV PN++TF++VLSAC
Sbjct: 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVV 461
++GL ++GW +M I+P HY CM++LLGR G L EAY +I K +
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496
Query: 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521
W +LL ACRIHKN++LG +AA+KL+ + P +V+L N+Y ++GR + + +K
Sbjct: 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556
Query: 522 RRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHD 581
+ L+ P + +E++ + H+F GD+ HPQ +IY+ L+EL ++ E GYV + ++ D
Sbjct: 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616
Query: 582 VDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDREIV 623
VD++E++++ R HSEKLA + R+C DCH VI+ I+ V REIV
Sbjct: 617 VDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676
Query: 624 VRDSKRFHYFKDGLCSCGDYW 644
VRD+ RFH+FK G CSCGDYW
Sbjct: 677 VRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 275 bits (704), Expect = 1e-81
Identities = 135/374 (36%), Positives = 212/374 (56%), Gaps = 16/374 (4%)
Query: 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAH 96
++FSWN ++ A+ G EAL + M + P TFPC +++C + DL G++ H
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 97 QQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156
FGF DV V +ALI MY KCG++ AR +FD +P R+ +SW +M++GY +N
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGE 268
Query: 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIK 216
E L LF F + E V D + I SV+SAC + + HG+V+K
Sbjct: 269 CLEGLELF--FTMRELS----------VDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 217 RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDV 276
GF +V V N+LI Y G + KVF M KDAV+W ++I+ Y +NGL +AL+
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 277 FDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336
+ +++ +V + +T+++VL A A LG L +G +H+ + L V+V ++I+MY
Sbjct: 377 Y-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS 396
KC +D A + F+ + EK+V SWT++IAG ++ R EAL F +M+ ++PN +T ++
Sbjct: 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIA 494
Query: 397 VLSACSHAGLVQEG 410
LSAC+ G + G
Sbjct: 495 ALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-48
Identities = 125/455 (27%), Positives = 212/455 (46%), Gaps = 26/455 (5%)
Query: 42 NSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFI 101
NS + L G +AL+ SM++L + + + C + G + +A
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 102 FGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREAL 161
V + +A++ M+ + GEL A +F ++P+R ++ SW ++ GY + EAL
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER--DLFSWNVLVGGYAKAGYFDEAL 172
Query: 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS 221
L+ L V D VL C + H V++ GF+
Sbjct: 173 CLYHRMLWA------------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281
+V V N LI Y + G V +R VFD M +D ++WN++I+ Y +NG E L++F M
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM- 279
Query: 282 KSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341
+ V + +T+++V+ A LG RLG+ +H V+K V V S+I MY G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 342 DLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401
A K F++M+ K+ SWTAMI+GY + +AL+ + M + V P+ IT SVLSAC
Sbjct: 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHY----GCMVDLLGRAGKLKEAYDLIEGMKVKA 457
+ G + G HE G+ Y ++++ + + +A ++ + K
Sbjct: 400 ACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK- 453
Query: 458 DFVVWGSLLGACRI-HKNVDLGEIAAKKLFELEPN 491
D + W S++ R+ ++ + + L L+PN
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-46
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 20/287 (6%)
Query: 28 LFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSM-RKLSLTPTRSTFPCAIKSCSAL 86
LF++ ++N + SW ++I L G+ EA F M S R TF +++ + L
Sbjct: 180 LFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGL 237
Query: 87 HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS 146
+G+Q H G D FVS ALIDMYSKCG++ DAR +FD +P+ + V+W S
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNS 295
Query: 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGV 206
ML GY + + EAL L+ E V +D + ++ SR+ +
Sbjct: 296 MLAGYALHGYSEEALCLYYEM------RDSG------VSIDQFTFSIMIRIFSRLALLEH 343
Query: 207 TEGAHGFVIKRGFDSEVGVGNT-LIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYA 265
+ AH +I+ GF ++ V NT L+D Y++ G ++ +R VFD M K+ ++WN++IA Y
Sbjct: 344 AKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 266 QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI 312
+G +A+++F++M+ + V N VT AVL A + G+ G I
Sbjct: 403 NHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 9e-36
Identities = 93/354 (26%), Positives = 181/354 (51%), Gaps = 24/354 (6%)
Query: 27 TLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSAL 86
+F++ ++ + SW ++I+ + G +AL ++ M + +++P T + +C+ L
Sbjct: 344 KVFSR-METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 87 HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS 146
DL G + H+ A G V V++ALI+MYSKC + A ++F IP+ ++++SWTS
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTS 460
Query: 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGV 206
++ G N+ EAL+ F++ LL + +SV + + LSAC+R+
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLL-------------TLKPNSVTLIAALSACARIGALMC 507
Query: 207 TEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQ 266
+ H V++ G + + N L+D Y R G ++ + F+ EKD V+WN ++ Y
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVA 566
Query: 267 NGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG-KCIHDQVIKMDLEESV 325
+G + A+++F++MV+S V + VT ++L A + G++ G + H K + ++
Sbjct: 567 HGKGSMAVELFNRMVES-GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEK-NVRSWTAMIAGYGMHCRAREALDL 378
++D+ + G++ A N+M + W A++ CR ++L
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA----CRIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-17
Identities = 43/126 (34%), Positives = 53/126 (42%), Gaps = 29/126 (23%)
Query: 528 PGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEK 587
PG E L GD HP EEL +++ G V + + HDVD EE
Sbjct: 1 PGCVWSE----GKKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 588 EMTLRI------HSEKLA-------------NLRVCGDCHTVIRLISKVVDREIVVRDSK 628
H+EK A R+CGDCH R I+K REI+VRD
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPS 110
Query: 629 RFHYFK 634
RFH+FK
Sbjct: 111 RFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-15
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 10/230 (4%)
Query: 247 DGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL 306
D I K V+ S I G EAL++F+ + A T A++ A L +
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 307 RLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGY 366
R K ++ V E + ++ M+ KCG + AR+ F++M E+N+ SW +I G
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG 426
REA LF +M + G TFV +L A + G + G H ++ G
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL-----HCCVLKTG 254
Query: 427 V---EHYGC-MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIH 472
V C ++D+ + G +++A + +GM K V W S+L +H
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-TVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 25/265 (9%)
Query: 208 EGAHG---FVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEKDAVTWNSI 260
+GA V + G ++ + TLI A+ G VD +VF M +E + T+ ++
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513
Query: 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG-VLRLGKCIHDQVIKM 319
I A+ G A+A + M +S +VK + V +A++ A G V R D + +M
Sbjct: 514 IDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDR----AFDVLAEM 568
Query: 320 DLE------ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRS----WTAMIAGYGMH 369
E + + VG +++ GQVD A++ + + E N++ +T +
Sbjct: 569 KAETHPIDPDHITVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429
AL ++ M K GV+P+ + F +++ HAG + + + L + I+ G
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVS 686
Query: 430 YGCMVDLLGRAGKLKEAYDLIEGMK 454
Y ++ A K+A +L E +K
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIK 711
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403
+V ++ +I GY + EAL LF +M K G++PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 252 KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL 297
D VT+N++I Y + G EAL +F++M K +K N T S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 329 TSIIDMYCKCGQVDLARKAFNQMKEK----NVRSWTAMIAGY 366
++ID YCK G+V+ A K FN+MK++ NV +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 92/405 (22%), Positives = 157/405 (38%), Gaps = 70/405 (17%)
Query: 66 KLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELS 125
KL PT STF + C++ D+ + + G D + + LI +K G++
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 126 DARKLFDEI------PQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASE 179
++F E+ N+ ++ +++ G AR A + K F GA
Sbjct: 490 AMFEVFHEMVNAGVEA----NVHTFGALIDGC-----AR-AGQVAKAF--------GAYG 531
Query: 180 --NSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFD--------------SEV 223
S NV D V +++SAC + GA + R FD +
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQS-------GA----VDRAFDVLAEMKAETHPIDPDHI 580
Query: 224 GVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNS---IIAIYA--QNGLAAEALDVFD 278
VG L+ A A G VD +++V+ MI + + IA+ + Q G AL ++D
Sbjct: 581 TVG-ALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 279 QMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC 338
M K VK + V SA++ H G L I K ++ + +S++
Sbjct: 639 DMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 339 GQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRARE---ALDLFYKMIKAGVRPNY 391
A + + +K V + A+I C + AL++ +M + G+ PN
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITAL---CEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436
IT+ +L A G L+ + I+P + C+ L
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390
++ +I G R EAL+LF +M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKS 283
VT+NS+I+ Y + G EAL++F +M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 377 DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436
++F++M+ AGV N TF +++ C+ AG V + + M + N++P + ++
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISA 551
Query: 437 LGRAGKLKEAYDLIEGMK-----VKADFVVWGSLLGAC 469
G++G + A+D++ MK + D + G+L+ AC
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGV 387
++ ++I+GY + EAL+LF +M + GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 227 NTLIDAYARGGHVDVSRKVFDGMIEK----DAVTWNSII 261
NTLID Y + G V+ + K+F+ M ++ + T++ +I
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 249 MIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281
++ D VT+N++I + G EA+++ D+M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83
+V ++N++I + G EAL+ F+ M+K + P T+ I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 329 TSIIDMYCKCGQVDLARKAFNQMKEKNV 356
S+I YCK G+++ A + F +MKEK V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IR-NIVSWTSMLTGY 151
DV + LID Y K G++ +A KLF+E+ +R I+ N+ +++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKS 283
VT+N++I + G EAL++F +M +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVR 357
++ID CK G+V+ A + F +MKE+ +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVR 357
+++ K G DLA +MK ++
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.08 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.77 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.71 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.36 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.23 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.21 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.18 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.17 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.06 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.89 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.89 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.94 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.8 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.44 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.94 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.91 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.22 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.21 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.45 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.09 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.17 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.9 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.18 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.09 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.39 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.3 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.11 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.04 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.31 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.72 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.67 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.13 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-120 Score=1019.09 Aligned_cols=620 Identities=40% Similarity=0.704 Sum_probs=610.2
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 4 SKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
|+..+|++|+..|++.|++++|.++|++|+.+ |+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 67789999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLL 163 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 163 (644)
++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. ||+++||++|.+|++.|++++|+++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHH
Q 006457 164 FKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSR 243 (644)
Q Consensus 164 ~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 243 (644)
|++|. ..|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.
T Consensus 377 f~~M~------------~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 377 YALME------------QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HHHHH------------HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Q 006457 244 KVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE 323 (644)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 323 (644)
++|++|.++|+++||+||.+|+++|+.++|+++|++|. . +++||..||+.+|.+|++.|+++.++++|..+.+.|+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999997 4 699999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
+..++|+||++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 006457 484 KLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELN 563 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~ 563 (644)
++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+..+||..+.+|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCccccccCchhHHhHHhHHHHHHhh------------------hccccCCcchhhHhhhhccceeEEEe
Q 006457 564 VKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDREIVVR 625 (644)
Q Consensus 564 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~~~~~~~s~~~~~~~~~~ 625 (644)
.+|++.||+||++.++ ++++++|+..+++|||||| |||+|+|||+++||||++++|+||||
T Consensus 762 ~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 9999999999999888 4577889999999999999 99999999999999999999999999
Q ss_pred cCCcccccccccccCCC
Q 006457 626 DSKRFHYFKDGLCSCGD 642 (644)
Q Consensus 626 ~~~~~h~~~~g~~~~~~ 642 (644)
|.+|||||+||+|||+|
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-118 Score=977.43 Aligned_cols=595 Identities=38% Similarity=0.688 Sum_probs=586.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC-CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 006457 35 KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLS-LTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 35 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (644)
+++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3366799999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS 193 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ 193 (644)
|+.+|+++|+++.|.++|++|++ ||.++||++|.+|++.|++++|+++|++|. ..|+.||..||+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~------------~~g~~p~~~t~~~ 229 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMW------------EDGSDAEPRTFVV 229 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH------------HhCCCCChhhHHH
Confidence 99999999999999999999999 999999999999999999999999999999 8899999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 273 (644)
++.+|++.|..+.+++++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006457 274 LDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE 353 (644)
Q Consensus 274 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (644)
+++|++|. ..|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..++++||++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHH
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCM 433 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 433 (644)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998878999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 434 VDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+++|+++|++++|.+++++|+.+|+..+|++|+.+|..+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhHHhHHhHH
Q 006457 514 RTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRI 593 (644)
Q Consensus 514 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 593 (644)
++++.|+++|+++.||+||+++++.+|.|.+||..||+..+||+.+.++..+|++.||+||+.++++++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh------------------hccccCCcchhhHhhhhccceeEEEecCCcccccccccccCCCCC
Q 006457 594 HSEKLA------------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644 (644)
Q Consensus 594 ~~~~~~------------------~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~~~ 644 (644)
|||||| |||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999 999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=672.98 Aligned_cols=600 Identities=28% Similarity=0.425 Sum_probs=531.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
.++...+|+|+..|++.|+++.|+++|++|+++ |+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 356678899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
|+..+++..+.++|..+++.|+.||..++|+||.+|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
+|++|. ..|+.||..||+.++.+|++.|+.+.+++++..+.+.|+.||..+||+||.+|+++|++++|
T Consensus 275 lf~~M~------------~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 275 LFFTMR------------ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHHHHH------------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
.++|++|..+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS 402 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (644)
|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+++|.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 403 HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
+.|.++.+.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|
T Consensus 501 ~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 501 RIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999977 599999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhhccC--CCCchhHHHHHHHHhhcCCchHHHHHHHHHh-hCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHH
Q 006457 483 KKLFELE--PNNCGYHVLLSNIYANAGRWEDVERTRSLMK-NRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYL 559 (644)
Q Consensus 483 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~ 559 (644)
++|.+.+ |+ ..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.... ...+..+ ...++.++ +
T Consensus 578 ~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----~~lv~~l----~r~G~~~e----A 644 (857)
T PLN03077 578 NRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----ACVVDLL----GRAGKLTE----A 644 (857)
T ss_pred HHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH----HHHHHHH----HhCCCHHH----H
Confidence 9998854 65 5789999999999999999999999998 67876543110 0000001 11122222 4
Q ss_pred HHHHHHHHHcCcccCCccccccCchhHHhHHh---HHHHH--------------Hhhh-ccccCCcchhhHhhhhcccee
Q 006457 560 EELNVKLQEVGYVTDMTSVIHDVDQEEKEMTL---RIHSE--------------KLAN-LRVCGDCHTVIRLISKVVDRE 621 (644)
Q Consensus 560 ~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~-l~~~~~~~~~~~~~s~~~~~~ 621 (644)
.+++++| +..||...+...+..+.....+ ....+ .|+| ....|+..++.++...|..+.
T Consensus 645 ~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 645 YNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 4455444 5788876644333333111000 00011 1112 356788899999888775552
Q ss_pred EE-------EecCCcccccccccc
Q 006457 622 IV-------VRDSKRFHYFKDGLC 638 (644)
Q Consensus 622 ~~-------~~~~~~~h~~~~g~~ 638 (644)
+- |.-.+..|-|..|--
T Consensus 722 ~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 722 LTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred CCCCCCccEEEECCEEEEEecCCC
Confidence 21 112346777765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=589.62 Aligned_cols=507 Identities=17% Similarity=0.199 Sum_probs=469.0
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC----CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK----NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC 78 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 78 (644)
.++...|..++..+++.|++++|.++|++|+.+ |+...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 456778999999999999999999999999876 2445667788889999999999999999974 99999999
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhCCC
Q 006457 79 AIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 156 (644)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|... .||..+|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999865 6899999999999999999
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHH--hCCCCCccHHHHHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIK--RGFDSEVGVGNTLIDAYA 234 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~ 234 (644)
+++|+++|++|. ..|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||.+|+
T Consensus 523 ~eeAl~lf~~M~------------~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 523 VAKAFGAYGIMR------------SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHHHH------------HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999987 678999999999999999
Q ss_pred hcCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 235 RGGHVDVSRKVFDGMI----EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
++|++++|.++|+.|. .++..+||.+|.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999994 4578999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
++|+.|.+.|+.|+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 5899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcC-------------------CH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG----RAG-------------------KL 443 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~ 443 (644)
+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+.+|. +++ ..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 999999999999999999999999999999966 599999999999998743 222 24
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-CCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 444 KEAYDLIEGM---KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL-EPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 444 ~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
++|..+|++| ++.||..+|++++.++...+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 6799999999 68999999999998888888888888888876533 355678999999987332 36899999999
Q ss_pred hhCCCcCCCc
Q 006457 520 KNRRLAKTPG 529 (644)
Q Consensus 520 ~~~~~~~~~~ 529 (644)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999987653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=549.01 Aligned_cols=471 Identities=14% Similarity=0.189 Sum_probs=442.8
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 4 SKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
++..+++.++..|.+.|.+++|..+|+.|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566788899999999999999999999998 599999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhCCChhHHH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|... .||..+||+||.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999765 799999999999999999999999
Q ss_pred HHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHH
Q 006457 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDV 241 (644)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 241 (644)
++|++|... ..++.||..||++++.+|++.|+++.|.++++.|.+.|+.|+..+|+.+|.+|++.|++++
T Consensus 563 ~lf~eM~~~----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 563 DVLAEMKAE----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred HHHHHHHHh----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 999999721 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 242 SRKVFDGMI----EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 242 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. ..|+.||..+|++++.+|++.|++++|.++|++|.
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999994 5799999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|.+|.+.|+.||..+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999997 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc----c-------------------CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 394 FVSVLSACSH----A-------------------GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 394 ~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
|++++..|.+ . +..++|..+|++|.+ .|+.||..+|+.++..+.+.+..+.+..++
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~ 870 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHH
Confidence 9999876542 1 124679999999976 599999999999999999999999999999
Q ss_pred HhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 451 EGMK---VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 451 ~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9884 556789999999998543 368999999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=530.57 Aligned_cols=404 Identities=26% Similarity=0.436 Sum_probs=387.7
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
.|+..+|+.|+..|++.|++++|.++|++|+.+ |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 378899999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
|++.+....+.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+. +|+++||+||.+|++.|+.++|++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
+|++|. ..|+.||..||++++.+|++.|.++.|+++|..|.+.|+.||..++++||++|+++|++++|
T Consensus 312 lf~~M~------------~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 312 LYYEMR------------DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHHHHH------------HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHH-hCC
Q 006457 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIK-MDL 321 (644)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~ 321 (644)
.++|++|.++|+++||+||.+|++.|+.++|+++|++|. ..|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+
T Consensus 380 ~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 889999999999999999999999999999999986 699
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMK-EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLS 399 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 399 (644)
.|+..+|+.++++|++.|++++|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~ 536 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLN 536 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHH
Confidence 9999999999999999999999999999997 58999999999999999999999999998875 4564 668999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
.|++.|++++|.++++.|.+ .|+.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 99999999999999999955 57653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-30 Score=292.91 Aligned_cols=498 Identities=13% Similarity=0.062 Sum_probs=382.4
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.++..+..+...+.+.|++++|.+.|+++... | +...|..+...+...|++++|++.|+.+.+.... +......++
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHH
Confidence 456678888999999999999999999887532 2 5567888888888999999999999998875422 234455667
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..+.+.|++++|.++++.+.+.. +++..++..+...|...|++++|...|+++... +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 77888889999999888887653 556778888888888899999999988887654 3456677788888888899999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|.+.|+++.. . .+.+..++..+...+...|+.+.+...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 518 A~~~~~~~~~------------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 518 AIQRFEKVLT------------I-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHHHH------------h-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 9998888862 1 12356677777778888888888888888877664 44566777888888888888
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV 316 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 316 (644)
++|..+++.+.. .+...|..+..+|...|++++|+..|+++. .. .+.+...+..+...+...|++++|..+++.+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL-AL-QPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888742 366788888888888888888888888886 22 2335566777778888888888888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 317 IKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++... .|+..+
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 7754 44567778888888888888888888887764 34566777778888888888888888888774 455566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 471 (644)
+..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 77777888888888888888888765 23446777788888888888888888888776 2 23456677777777777
Q ss_pred cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777 6788888888888888877777888888888888888888888876654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=290.85 Aligned_cols=497 Identities=12% Similarity=0.010 Sum_probs=427.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.+...+..+...+.+.|++++|...+..+... .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 445677888999999999999999999887542 266789999999999999999999999998754 22455677777
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..+...|++++|.+.+..+.+... ........++..|.+.|++++|..+++.+... +.+..+|+.+...|...|++++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 888899999999999999988653 23456667888999999999999999998766 4577889999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|.+.|+++. .. .+.+...+..+...+...|+++.|.+.+..+.+.. +.+..++..+...|.+.|+.
T Consensus 484 A~~~~~~a~------------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 484 AREAFEKAL------------SI-EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHHHHH------------hh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 999999986 21 12345567778888899999999999999998765 45678899999999999999
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV 316 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 316 (644)
++|...|+++.. .+...+..++..|...|++++|+.+++.+. . ..+.+..++..+...+...|++++|...++.+
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-D-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998833 356788889999999999999999999997 3 34567788999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 317 IKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|..+++.+.+.+ +++...
T Consensus 628 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 628 LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 8865 45677788999999999999999999998764 357789999999999999999999999999875 557778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 471 (644)
+..+...+...|++++|...|+.+.. ..|+..++..++.++.+.|++++|.+.++++ . .+.+...+..+...+..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88888999999999999999999854 4566688888999999999999999999887 2 33467788889999999
Q ss_pred cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.|+.++|...++++++..|+++..+..++.++...|+ ++|.++++++.+..
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999 88999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-21 Score=224.14 Aligned_cols=495 Identities=9% Similarity=0.008 Sum_probs=313.4
Q ss_pred CCCCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCc-chH----------------HHHHHHHHcCCCchHHHHHHH
Q 006457 1 MKLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNV-FSW----------------NSVIADLARGGDSVEALRAFS 62 (644)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~-~~~----------------~~li~~~~~~g~~~~a~~~~~ 62 (644)
+.+.++..+..++..+.+.|+.++|.+.++++... |+. ..+ -.+...+...|++++|++.|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 35678889999999999999999999999987542 322 222 223346788999999999999
Q ss_pred HhhHCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC-
Q 006457 63 SMRKLSLTPTRST-FPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN- 140 (644)
Q Consensus 63 ~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 140 (644)
.+.+.. +|+... ...........++.++|.+.++.+++.. +.+...+..+...+...|+.++|...|+++....+.
T Consensus 137 ~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 988743 233221 1111222234588999999999999875 446677888889999999999999998876432110
Q ss_pred --------------------eecHH----------------------------------HHHHHHHhCCChhHHHHHHHH
Q 006457 141 --------------------IVSWT----------------------------------SMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 141 --------------------~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~ 166 (644)
...+. .....+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00000 113345667888888888888
Q ss_pred hHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-CccHH------------HHHHHH
Q 006457 167 FLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS-EVGVG------------NTLIDA 232 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~ 232 (644)
... ..| +...+..+-.++.+.|+.++|...++.+++..-.. ....+ ..+...
T Consensus 295 aL~--------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 295 AVR--------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 752 234 56677777788888899999998888887654221 11111 122446
Q ss_pred HHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHH
Q 006457 233 YARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRL 308 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~ 308 (644)
+.+.|++++|...|+++.. .+...+..+...|...|++++|++.|++.. . ..|+ ...+..+...+. .++.++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~--~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL-R--MDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHH-hcCHHH
Confidence 7788889999988888733 356677778888888999999999988887 2 2233 333333333332 223344
Q ss_pred HHHHHHHHHHhCC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 309 GKCIHDQVIKMDL--------EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 309 a~~i~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
|..+++.+..... ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4433332211100 00011233344445555555555555554432 2 22334444445555555555555
Q ss_pred HHHHHHHcCCCC-CHHHH--------------------------------------------HHHHHHHHccCCHHHHHH
Q 006457 378 LFYKMIKAGVRP-NYITF--------------------------------------------VSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 378 ~~~~m~~~g~~p-~~~t~--------------------------------------------~~ll~a~~~~g~~~~a~~ 412 (644)
.++++.+. .| +...+ ..+...+...|+.++|..
T Consensus 517 ~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55554432 12 11111 123334455566666655
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 5541 2334556677788888888888888888876 3344 456778888888888888888888888888888
Q ss_pred CCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 491 NNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+++..+..++.++...|++++|.++++.+....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888888888888888888888876543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-21 Score=218.73 Aligned_cols=501 Identities=11% Similarity=0.065 Sum_probs=326.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccH--------
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVD--KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTF-------- 76 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------- 76 (644)
..+...+..+...++.+.|.+.++++.. +.|+..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Confidence 3356677788889999999999998753 3377788999999999999999999999999854 554433
Q ss_pred ---------HHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHH
Q 006457 77 ---------PCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFV-SSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWT 145 (644)
Q Consensus 77 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 145 (644)
..+.+.+...|++++|.+.++.+++.. +|+... ...+.......|+.++|.+.|+++... +.+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 222345778899999999999998754 333321 111122223459999999999999876 34667788
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCC------CCCCCCCccCCH-hhHHHH------------------------
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGG------ASENSDNVFVDS-VAIASV------------------------ 194 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~~~~~p~~-~t~~~l------------------------ 194 (644)
.+...+...|+.++|+..|+++......... ......+..|+. ..+...
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 8999999999999999999998521100000 000000000000 001111
Q ss_pred ----------HHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---CHhHHHH
Q 006457 195 ----------LSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--K---DAVTWNS 259 (644)
Q Consensus 195 ----------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ 259 (644)
-.++...|+++.|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ | ....|..
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 122334556666666666655542 23455556666666666666666666665532 1 1122333
Q ss_pred HHH------------HHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 260 IIA------------IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 260 li~------------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
++. .+.+.|++++|+..|++.. .. -+.+...+..+...+...|++++|.+.++++++.. +.+...
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al-~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR-QV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 321 3345566666666666665 21 12233444455556666666666666666666543 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKN------------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITF 394 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 394 (644)
+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 444555443 345566666665544211 112344556677889999999999999885 45 45667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHH-----------------------------------------
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGC----------------------------------------- 432 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~----------------------------------------- 432 (644)
..+...+.+.|++++|...++.+.+. .| +...+..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 78888999999999999999998652 23 2322222
Q ss_pred ---HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc
Q 006457 433 ---MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 433 ---li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (644)
+...+...|+.++|.++++.-+ ++...+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 2334555666666666666432 34456677888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhC
Q 006457 510 EDVERTRSLMKNR 522 (644)
Q Consensus 510 ~~a~~~~~~m~~~ 522 (644)
++|.+.++...+.
T Consensus 654 ~eA~~~l~~ll~~ 666 (1157)
T PRK11447 654 AAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-26 Score=185.97 Aligned_cols=94 Identities=63% Similarity=1.015 Sum_probs=85.1
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhHH--------hHHhHHHHHHhh-
Q 006457 529 GFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEK--------EMTLRIHSEKLA- 599 (644)
Q Consensus 529 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~- 599 (644)
|+||+++ |.|.+||.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899976 9999999999987 556777889999999999998877665 568899999999
Q ss_pred -----------hc-cccCCcchhhHhhhhccceeEEEecCCcccccc
Q 006457 600 -----------NL-RVCGDCHTVIRLISKVVDREIVVRDSKRFHYFK 634 (644)
Q Consensus 600 -----------~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 634 (644)
|+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINTRVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HhcccceeEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 66 999999999999999999999999999999997
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=188.47 Aligned_cols=465 Identities=14% Similarity=0.124 Sum_probs=366.7
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006457 23 TNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIF 102 (644)
Q Consensus 23 ~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 102 (644)
....+-|+.-++. +. ....|..-..+.|++++|.+.-...-+.+ ..+......+-..+....+++...+--...++.
T Consensus 35 ~~v~qq~~~t~~~-~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEG-SD-DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCcc-ch-hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 3344444443333 22 24456666678899999988766544433 223333333344555556666555544444443
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCC
Q 006457 103 GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENS 181 (644)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 181 (644)
. +.-..+|+.+.+.+-..|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al------------- 177 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL------------- 177 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH-------------
Confidence 2 334678999999999999999999999998887 4478899999999999999999999998854
Q ss_pred CCccCCHhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHH
Q 006457 182 DNVFVDSVAIASVLSA-CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKD---AVTW 257 (644)
Q Consensus 182 ~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 257 (644)
.+.|+.+...+-+.. ....|.+++|..-+-.++... +.=..+|+.|...+-..|++..|+..|++...-| ..+|
T Consensus 178 -qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAY 255 (966)
T KOG4626|consen 178 -QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAY 255 (966)
T ss_pred -hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHH
Confidence 566766655443333 334688889988888777653 2235679999999999999999999999986543 4578
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
-.|...|-..+.+++|+..|.+.. ...|+ ...+..+...|-..|.++.|...+++.+... +.-...|+.|..++-
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALK 331 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHH
Confidence 889999999999999999999887 45565 4567777777888999999999999998864 334678999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
..|++.+|.+.+.+... | -..+.+.|...|...|.+++|..+|..... +.|. ...++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 99999999999998774 3 356889999999999999999999999887 5665 4578899999999999999999
Q ss_pred HHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 413 WLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 413 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.+...|+..+|+..++.+++++
T Consensus 410 ~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999984 58887 788999999999999999999999876 56664 4478889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 490 PNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
|+.+.+|..++.++.-..+|.+=-+.
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHH
Confidence 99999999999888777777774333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-17 Score=183.11 Aligned_cols=496 Identities=7% Similarity=-0.024 Sum_probs=329.6
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCC-----------
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSL----------- 69 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------- 69 (644)
.+.+..++..|...|.+.|+.++|+..+++.... |+-..|..++..+ +++.+|..+++++.....
T Consensus 74 dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4566788888899999999999999888876543 3222222223222 667777777777665321
Q ss_pred ---------------------------CCCcccHHHH-HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 006457 70 ---------------------------TPTRSTFPCA-IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK- 120 (644)
Q Consensus 70 ---------------------------~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 120 (644)
.|+..+.... .+.+...++++.+..++..+.+.+. .+..-...|-..|..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAG 229 (987)
T ss_pred HhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 1122222222 4555566677777777777777652 234445555556666
Q ss_pred CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH-------
Q 006457 121 CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS------- 193 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~------- 193 (644)
.++ +.|..+++.... .+...+..+...|.+.|+.++|..+++++..-... .|+..++..
T Consensus 230 l~~-~~a~al~~~~lk--~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-----------~~~~~~~~~~l~r~~~ 295 (987)
T PRK09782 230 QLD-DRLLALQSQGIF--TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT-----------DAQEKSWLYLLSKYSA 295 (987)
T ss_pred hCH-HHHHHHhchhcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-----------CCccHHHHHHHHhccC
Confidence 355 666666554333 57778889999999999999999999998632111 122211111
Q ss_pred -----------------------HHHHhhcCCCchHHHHH-----------------------------HHHHHHhCCCC
Q 006457 194 -----------------------VLSACSRVTVNGVTEGA-----------------------------HGFVIKRGFDS 221 (644)
Q Consensus 194 -----------------------ll~~~~~~~~~~~a~~~-----------------------------~~~~~~~g~~~ 221 (644)
++..+.+.++++.++++ +..+.+.. +-
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~ 374 (987)
T PRK09782 296 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PA 374 (987)
T ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CC
Confidence 12223333333333322 11111110 11
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----CHhHHHHHHHHHHHCCC---hhHHHHH----------------
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIE-K-----DAVTWNSIIAIYAQNGL---AAEALDV---------------- 276 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 276 (644)
+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 223333333445678889999999988744 1 23344466777777665 3333333
Q ss_pred ------HHHhHHcCCC-CC--ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006457 277 ------FDQMVKSTDV-KC--NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347 (644)
Q Consensus 277 ------~~~m~~~~~~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 347 (644)
+.......+. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1112111122 23 44555555555555 78888999787777654 4544444445555789999999999
Q ss_pred HHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 348 FNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 348 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
|+++.. ++...+..+...+.+.|+.++|...|++..+.. +++...+..+.......|++++|...++...+ +.|
T Consensus 532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P 607 (987)
T PRK09782 532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAP 607 (987)
T ss_pred HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCC
Confidence 997764 445567777888899999999999999998854 22333343444555667999999999999854 567
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+...|..+..++.+.|++++|+..+++. ...|+ ...++.+..++...|+.++|+..++++++++|+++..+..++.++
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999999999999999999987 45564 557778888999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhCC
Q 006457 504 ANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~~ 523 (644)
...|++++|...+++..+..
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999987543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-18 Score=185.52 Aligned_cols=476 Identities=12% Similarity=0.049 Sum_probs=326.2
Q ss_pred HHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
+...|++++|...|...... | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.++|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34449999999999987542 3 6678899999999999999999999999984 56666665555333 8889999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHH--------HHhCCChHHHHHHHhhCCCCCCCeecHHHH-HHHHHhCCChhHHHHHH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDM--------YSKCGELSDARKLFDEIPQRIRNIVSWTSM-LTGYVQNDNAREALLLF 164 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 164 (644)
++++.+++.. +.+..++..+... |.+.+...++++ .+.....|+....... ...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999875 3345555555555 776655555555 2222211234434444 89999999999999999
Q ss_pred HHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhc-CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHH
Q 006457 165 KEFLLEESECGGASENSDNVFVDSVAIASVLSACSR-VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSR 243 (644)
Q Consensus 165 ~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 243 (644)
.++. ..+. .+..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+.++|.
T Consensus 206 ~~L~------------k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 206 NEAR------------QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHH------------hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9997 4332 223334444445555 355 555555332 33467888889999999999999999
Q ss_pred HHHhcCCC-----CCHhHH--H----------------------------HHHHH-------------------------
Q 006457 244 KVFDGMIE-----KDAVTW--N----------------------------SIIAI------------------------- 263 (644)
Q Consensus 244 ~~~~~~~~-----~~~~~~--~----------------------------~li~~------------------------- 263 (644)
++++++.. ++..+| + .++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 98887721 100000 0 00111
Q ss_pred --------------------------------------HHHCCChhHHHHHHHHhHH-cCCCCCChhhHHHHHHHHHccc
Q 006457 264 --------------------------------------YAQNGLAAEALDVFDQMVK-STDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 264 --------------------------------------~~~~g~~~~A~~~~~~m~~-~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
..+.|+.++|.++|+.... .....++......++..+.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 1334555666666665541 1112222333335555555554
Q ss_pred c---HHHHHHH----------------------HHHHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 006457 305 V---LRLGKCI----------------------HDQVIKM-DL-EE--SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN 355 (644)
Q Consensus 305 ~---~~~a~~i----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 355 (644)
. ...+..+ .....+. +. ++ +...+..+...+.. |+.++|...|.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 4 2222111 1111111 11 23 56667777777776 78888988777665432
Q ss_pred hhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHH
Q 006457 356 VRSWTAMIAG--YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGC 432 (644)
Q Consensus 356 ~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 432 (644)
...++.+..+ +...|++++|...|+++... +|+...+..+..++.+.|++++|..+++...+. .|+ ...+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~ 581 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWW 581 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHH
Confidence 2344444444 46899999999999998653 555566667778889999999999999998652 343 344444
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+...+.+.|++++|...+++. ...|+...|..+..++.+.|+.++|+..++++++++|+++..+..++.++...|++++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445555679999999999986 5678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 006457 512 VERTRSLMKNRR 523 (644)
Q Consensus 512 a~~~~~~m~~~~ 523 (644)
|...++...+..
T Consensus 662 Ai~~l~~AL~l~ 673 (987)
T PRK09782 662 SREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhC
Confidence 999999887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=186.16 Aligned_cols=420 Identities=10% Similarity=0.013 Sum_probs=270.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 156 (644)
..-..+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|...++...+..| +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3444556667777777777776653 35566677777777777777777777776665423 45567777777777777
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
+++|+.-|..... ..+..+ .....++..... ..+........+.. +++...+..+.. |...
T Consensus 210 ~~eA~~~~~~~~~-----------~~~~~~--~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~ 270 (615)
T TIGR00990 210 YADALLDLTASCI-----------IDGFRN--EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQS 270 (615)
T ss_pred HHHHHHHHHHHHH-----------hCCCcc--HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHH
Confidence 7777776655431 111111 111111111100 11111111111111 222222222222 2221
Q ss_pred CCHHHHHHHHhcCCCCCH---hHHHHHHHH---HHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHH
Q 006457 237 GHVDVSRKVFDGMIEKDA---VTWNSIIAI---YAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 237 g~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a 309 (644)
.....+..-++...+.+. ..+..+... ....+.+++|++.|+...+.....| +...+..+...+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 271 FRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred ccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 111111111221111111 111111111 1234678889999988873222334 345566677777788999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...++..++.. +.....+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..
T Consensus 351 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998888754 33455777888888999999999999987754 356788889999999999999999999998853
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH------
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF------ 459 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~------ 459 (644)
+.+...+..+..++.+.|++++|+..|+...+. .+.+...+..+..+|...|++++|.+.|++. ...|+.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 334667777888889999999999999998652 3335788899999999999999999999885 333421
Q ss_pred -H-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 460 -V-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 460 -~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
. .++..+..+...|++++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 12222233345699999999999999999999889999999999999999999999988653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=174.02 Aligned_cols=419 Identities=11% Similarity=0.115 Sum_probs=332.7
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCC-CCCCeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQ-RIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 156 (644)
.|..-..+.|++.+|.+.-..+-... +.+....-.+-..+.+..+.+.....-..... .+.-..+|+.+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887555443332 12222222333556666666654432222222 12356789999999999999
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCcc-HHHHHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVG-VGNTLIDAYA 234 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~ 234 (644)
.++|+.+++.+. .++| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.+...
T Consensus 132 ~~~al~~y~~ai--------------el~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 132 LQDALALYRAAI--------------ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHH--------------hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH
Confidence 999999999986 3445 4667888999999999999999999888765 45443 3455666777
Q ss_pred hcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHH
Q 006457 235 RGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~ 310 (644)
..|++.+|...+.+..+. =.++|+.|...+..+|+.-.|+..|++.+ .+.|+ ...|-.+...+...+.++.|.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 789999999998877443 34689999999999999999999999998 45565 346777777888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
..+.+..... +....++..+.-.|-..|.+|-|...+++..+ |+ ...|+.|..++-..|+..+|.+.|.+....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 8887776643 34566677788889999999999999999875 44 468999999999999999999999999884
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHH
Q 006457 388 RPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF-VVWG 463 (644)
Q Consensus 388 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 463 (644)
.|+ ....+.|...+...|.+++|..+|.... .+.|. ...++.|...|-.+|++++|+..+++. .++|+. ..++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 555 4578899999999999999999999884 46676 677899999999999999999999886 788874 4899
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+...|...|+.+.|.+.+.+++.++|.-..++..|+.+|-..|++.+|+.-++...+-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-19 Score=181.15 Aligned_cols=294 Identities=10% Similarity=0.081 Sum_probs=227.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHcc
Q 006457 230 IDAYARGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHL 303 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~ 303 (644)
...+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+. ..+..++ ..++..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34556778888888888887432 45577888888888888888888888887 4322221 24566777788888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHhcCCHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--------VRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A 375 (644)
|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 4566778888888888899999988888876421 12355677788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...|+++.+.. +.+...+..+...+.+.|++++|.++|+++... .|+ ..++..++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998753 334557777888899999999999999998552 343 466788999999999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh---cCCchHHHHHHHHHhhCCCcCCCc
Q 006457 454 -KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN---AGRWEDVERTRSLMKNRRLAKTPG 529 (644)
Q Consensus 454 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 529 (644)
...|+...+..+...+...|++++|...++++++..|++.. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777788889999999999999999999999998764 4444444442 569999999999999999988886
Q ss_pred e
Q 006457 530 F 530 (644)
Q Consensus 530 ~ 530 (644)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=178.29 Aligned_cols=295 Identities=14% Similarity=0.104 Sum_probs=169.5
Q ss_pred HHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC
Q 006457 47 DLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD---VFVSSALIDMYSKCGE 123 (644)
Q Consensus 47 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 123 (644)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445666777777777776643 12334555666666666666666666666665432111 1345556666666666
Q ss_pred hHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC
Q 006457 124 LSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT 202 (644)
Q Consensus 124 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~ 202 (644)
+++|..+|+++.+. +.+..+++.++..+.+.|++++|++.++.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---------------------------------- 168 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE---------------------------------- 168 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH----------------------------------
Confidence 66666666666553 3345566666666666666666666666654
Q ss_pred CchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHH
Q 006457 203 VNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALD 275 (644)
Q Consensus 203 ~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 275 (644)
+.+..+. ...+..+...+.+.|++++|.+.|+++.+ .+..++..+...|.+.|++++|++
T Consensus 169 -------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 169 -------------KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred -------------HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1111100 11234456666677777777777776632 234566667777777777777777
Q ss_pred HHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 006457 276 VFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-- 353 (644)
Q Consensus 276 ~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 353 (644)
.|+++. ..+......++..+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|.++|+++.+
T Consensus 236 ~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 236 ALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 777776 22211113345556666666666666666666665543 3334445566666666666666666665442
Q ss_pred CChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 354 KNVRSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 354 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
|+..+++.++..+.. .|+.++++.++++|.+.+++|++.
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555556555555443 345666666666666655555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-16 Score=172.59 Aligned_cols=394 Identities=9% Similarity=0.006 Sum_probs=206.6
Q ss_pred HHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 006457 45 IADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL 124 (644)
Q Consensus 45 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (644)
+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 334445556666666655555411 1122235555555555566666666665555542 22334444555555555666
Q ss_pred HHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCC
Q 006457 125 SDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTV 203 (644)
Q Consensus 125 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~ 203 (644)
++|...+++.....| +.. |..+...+...|+.++|+..+++..
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----------------------------------- 143 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL----------------------------------- 143 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------
Confidence 666655555544322 333 5555555555555555555555543
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh--------HHHHHHHHHH-----HCCCh
Q 006457 204 NGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAV--------TWNSIIAIYA-----QNGLA 270 (644)
Q Consensus 204 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~ 270 (644)
+.. +.+...+..+..++...|..+.|.+.++.... ++. ....++.... ..+++
T Consensus 144 ------------~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 144 ------------PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred ------------HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 321 22344455566667777777777777776654 211 1111222221 11223
Q ss_pred ---hHHHHHHHHhHHcCCCCCChh-hHH----HHHHHHHccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCH
Q 006457 271 ---AEALDVFDQMVKSTDVKCNAV-TLS----AVLLAIAHLGVLRLGKCIHDQVIKMDLE-ESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 271 ---~~A~~~~~~m~~~~~~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 341 (644)
++|++.++.+.+.....|+.. .+. ..+.++...|++++|...++.+.+.+.+ |+. ....+...|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 667777777763222233321 111 1123344556777777777777665422 221 112245567777777
Q ss_pred HHHHHHHHhcCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHH
Q 006457 342 DLARKAFNQMKEKN-------VRSWTAMIAGYGMHCRAREALDLFYKMIKAG-----------VRPNY---ITFVSVLSA 400 (644)
Q Consensus 342 ~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a 400 (644)
++|...|+++.+.+ ...+..+..++...|++++|+.+++++.... -.|+. ..+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 77777777664321 1234445556677777777777777776531 01221 123344445
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
+...|++++|++.++.+.. ..+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|
T Consensus 369 l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 5566666666666666643 12234555666666666666666666666654 33443 33444445555566666666
Q ss_pred HHHHHHhhccCCCCc
Q 006457 479 EIAAKKLFELEPNNC 493 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~ 493 (644)
+.+++++++..|+++
T Consensus 447 ~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 447 DVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHhCCCCH
Confidence 666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=172.36 Aligned_cols=353 Identities=10% Similarity=0.023 Sum_probs=253.1
Q ss_pred hCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHH
Q 006457 120 KCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVL 195 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll 195 (644)
+..+++.-.-+|...++. ..+..-....+..+.+.|++++|+.+++... .. .+-+...+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l------------~~-~p~~~~~l~~l~ 83 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV------------LT-AKNGRDLLRRWV 83 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH------------Hh-CCCchhHHHHHh
Confidence 445555555555555443 1223334455667777788888888877765 11 111233344444
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhH
Q 006457 196 SACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 272 (644)
.+....|+++.|.+.++.+.+.. +.+...+..+...+...|++++|...|++... .+...|..+...+...|++++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 55566778888888877777653 44566778888888999999999999988743 356788888888999999999
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|...++.+. .. .|+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...|++..
T Consensus 163 A~~~~~~~~-~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 163 AISLARTQA-QE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHH-Hh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999988876 22 222222222233467789999999998888776533444455556778888999999999998876
Q ss_pred C---CChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 353 E---KNVRSWTAMIAGYGMHCRARE----ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 353 ~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
+ .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++.... ..|
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P 315 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THP 315 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCC
Confidence 4 356678888888999999885 789999988742 33556788888889999999999999998855 345
Q ss_pred C-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 426 G-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWG-SLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 426 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+ ...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4 566777888999999999999999877 3456654443 345678889999999999999999988753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-16 Score=170.89 Aligned_cols=391 Identities=9% Similarity=-0.011 Sum_probs=263.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 156 (644)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.... +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555555554321 223334455555555555555555555554333 1233444444455555555
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
+++|+..+++ +++. .+.+.. +..+..++...
T Consensus 99 ~~eA~~~l~~-----------------------------------------------~l~~-~P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 99 YDEALVKAKQ-----------------------------------------------LVSG-APDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHH-----------------------------------------------HHHh-CCCCHH-HHHHHHHHHHC
Confidence 5555555554 4443 233455 78888899999
Q ss_pred CCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh------hHHHHHHHH-----Hc
Q 006457 237 GHVDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV------TLSAVLLAI-----AH 302 (644)
Q Consensus 237 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------t~~~ll~a~-----~~ 302 (644)
|+.++|...++++.. | +...+..+...+...|..++|++.++... . .|+.. .....+... ..
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 999999999999843 3 56677778888999999999999998775 2 33320 111122221 11
Q ss_pred cccH---HHHHHHHHHHHHh-CCCCchh-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC--hhh--HHHHHHHHHhc
Q 006457 303 LGVL---RLGKCIHDQVIKM-DLEESVI-VG-TS---IIDMYCKCGQVDLARKAFNQMKEKN--VRS--WTAMIAGYGMH 369 (644)
Q Consensus 303 ~~~~---~~a~~i~~~~~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~~~ 369 (644)
.+.+ +.|...++.+.+. ...|+.. .+ .. .+.++...|++++|...|+.+.+.+ ... -..+...|...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 2233 6778888888764 2233221 11 11 1234457799999999999988642 111 22256789999
Q ss_pred CCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----------CCCC---hhHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN----------IEPG---VEHYGCM 433 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l 433 (644)
|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999987643111 134566677788999999999999999865311 1123 2345677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..++...|++++|++.++++ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 88999999999999999987 2334 567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 006457 512 VERTRSLMKNR 522 (644)
Q Consensus 512 a~~~~~~m~~~ 522 (644)
|..+++.+.+.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-15 Score=166.22 Aligned_cols=422 Identities=12% Similarity=0.026 Sum_probs=274.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006457 40 SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYS 119 (644)
Q Consensus 40 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (644)
.+......+.+.|++++|+..|++... +.|+...|..+..++...|+++.|.+.+...++.. +.+...+..+...|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 345566677777888888888877766 45666667777777777788888887777777654 234556777777777
Q ss_pred hCCChHHHHHHHhhCCCCC-CCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRI-RNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
..|++++|..-|....... .+......++..+.. ..+.......... .....|........+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----------KPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc----------CCCCCCCHHHHHHHHHHc
Confidence 8888888777665443211 111111112211111 1222222222100 111112222111111111
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCc-cHHHHHHHH---HHhcCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHHCC
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEV-GVGNTLIDA---YARGGHVDVSRKVFDGMIE------KDAVTWNSIIAIYAQNG 268 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 268 (644)
. ......-+.... ...+.. ..+..+... ....+++++|.+.|+...+ .+...|+.+...+...|
T Consensus 272 ~----~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 272 R----PKPRPAGLEDSN--ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred c----CCcchhhhhccc--ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 1 000000000000 001110 011111111 1234678889998887743 24557888888889999
Q ss_pred ChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 347 (644)
++++|+..|++.. . ..|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...
T Consensus 346 ~~~eA~~~~~kal-~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 346 KHLEALADLSKSI-E--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred CHHHHHHHHHHHH-H--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887 2 3444 5577778888888999999999999988764 45677888899999999999999999
Q ss_pred HHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 348 FNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 348 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
|++..+ | +...|..+...+.+.|++++|+..|++..+. .+-+...+..+...+...|++++|+..|+.... +.
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~ 497 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LE 497 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cC
Confidence 998764 3 4567888888999999999999999998874 233567888888899999999999999999854 33
Q ss_pred CCh--------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 425 PGV--------EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 425 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
|+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+..
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 321 11222233344579999999999885 45554 4578889999999999999999999999987764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-15 Score=159.39 Aligned_cols=434 Identities=9% Similarity=-0.012 Sum_probs=297.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPTRS-TFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYS 119 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (644)
|...|. ..+.|++..|+..|++..+. .|+.. ....++..+...|+.++|..+++..+.. ..........+...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 444443 34788888888888888774 34431 2226777777778888888888887711 1122223333355777
Q ss_pred hCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
..|++++|.++|+++.+..| |...+..++..|...++.++|++.++++. ...|+...+..++..+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~--------------~~dp~~~~~l~layL~ 179 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA--------------ERDPTVQNYMTLSYLN 179 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------ccCcchHHHHHHHHHH
Confidence 77888888888888877633 55666777778888888888888888854 3355555554343334
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CHhHHHH----HHHHHHH-------
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK-DAVTWNS----IIAIYAQ------- 266 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~------- 266 (644)
...++...|.+.++.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.- .+.-.++
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455545778888877764 456777788888888888888888887765431 1111100 0111111
Q ss_pred --CC---ChhHHHHHHHHhHHcCCCCCChh-----hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 267 --NG---LAAEALDVFDQMVKSTDVKCNAV-----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 267 --~g---~~~~A~~~~~~m~~~~~~~p~~~-----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
.. -.+.|+.-++.+....+-.|... ...-.+-++...++..++...++.+...+.+....+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 11 23556666666653333334322 222345577888999999999999998887666678889999999
Q ss_pred hcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCHH-H
Q 006457 337 KCGQVDLARKAFNQMKEK---------NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-------------RPNYI-T 393 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t 393 (644)
..+++++|..+|.++... +......|.-+|...+++++|..+++++.+.-. .||-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999987532 222346788899999999999999999987311 12222 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 471 (644)
+..++..+...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. ...|+ ..+......+...
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 33455667889999999999999954 23447888899999999999999999999766 34554 4466677778888
Q ss_pred cCChhHHHHHHHHhhccCCCCchh
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+++.+|..+.+.+++..|+++..
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 899999999999999999998743
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=164.79 Aligned_cols=327 Identities=11% Similarity=-0.012 Sum_probs=266.2
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAI 263 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 263 (644)
+..-...++..+.+.|++..|..++..++.... -+......++......|++++|...|+++.. .+...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344456677888899999999999999887653 3455566666777889999999999999843 366788899999
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
+.+.|++++|+..|++.. . +.| +...+..+...+...|++++|...+..+......+ ...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al-~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAW-L--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHH-H--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHH
Confidence 999999999999999997 2 334 45677788889999999999999999887765333 3333333 3478899999
Q ss_pred HHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHH
Q 006457 343 LARKAFNQMKEK----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE----GWHWL 414 (644)
Q Consensus 343 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~ 414 (644)
+|...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999987653 23344556778899999999999999999864 3356677888899999999986 89999
Q ss_pred HHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 415 NTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+.+.. +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 98854 445 5778999999999999999999999987 34454 557778889999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 492 NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
++..+..++.++...|++++|.+.++...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 87777778899999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-14 Score=152.71 Aligned_cols=421 Identities=11% Similarity=0.046 Sum_probs=306.2
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHH-HH--HHHHHhCCChhH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWT-SM--LTGYVQNDNARE 159 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~l--i~~~~~~g~~~~ 159 (644)
..+.|+++.|.+.+.++++....-...++ .++..+...|+.++|+..+++... |+...+. .+ ...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35889999999999999986522212345 888889999999999999999985 6444433 33 457888899999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|+++|+++... -+-|...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++.
T Consensus 121 Aiely~kaL~~-------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 121 ALALWQSSLKK-------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHhh-------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 99999998631 1223455567777888899999999999888765 45555555555556556777
Q ss_pred HHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhH------HHHHH-HH----Hcccc
Q 006457 240 DVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTL------SAVLL-AI----AHLGV 305 (644)
Q Consensus 240 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~------~~ll~-a~----~~~~~ 305 (644)
.+|++.++++.+ | +...+..+..+..+.|-...|+++..+-. . -+.+...-. ...+. +. ....+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~-~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP-N-LVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-c-ccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 679999999843 3 66778888999999999999998776543 1 122221111 11110 00 01122
Q ss_pred ---HHHHHHHHHHHHHh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCCC--h--hhHHHHHHHHHhcCCH
Q 006457 306 ---LRLGKCIHDQVIKM-DL-EESVIV-GTS---IIDMYCKCGQVDLARKAFNQMKEKN--V--RSWTAMIAGYGMHCRA 372 (644)
Q Consensus 306 ---~~~a~~i~~~~~~~-~~-~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g~~ 372 (644)
.+.|..-++.+... +- ++.... ..+ .+-++.+.|++.++.+.|+.+..+. + .+--++.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23444444444431 22 222222 223 3446778899999999999998542 2 3456788999999999
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----------CCCC---hhHHHHHH
Q 006457 373 REALDLFYKMIKAG-----VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN----------IEPG---VEHYGCMV 434 (644)
Q Consensus 373 ~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li 434 (644)
++|+.+|+++.... ..++......|..++...+++++|..+++.+.+... -.|+ ...+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999997643 122344457889999999999999999999965211 0122 23455677
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..+...|++.+|++.++++ ...| |...+..+...+...|....|+..++.+..++|++.......+.++...|+|.+|
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 8889999999999999988 2334 7778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 006457 513 ERTRSLMKNRR 523 (644)
Q Consensus 513 ~~~~~~m~~~~ 523 (644)
.++.+.+.+.-
T Consensus 504 ~~~~~~l~~~~ 514 (822)
T PRK14574 504 ELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhC
Confidence 99998876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-14 Score=147.53 Aligned_cols=435 Identities=10% Similarity=0.047 Sum_probs=277.7
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC--eecHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD--VFVSSALIDMYSKCGELSDARKLFDEIPQRIRN--IVSWTSM 147 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l 147 (644)
|+...+.|-+-+.-.+++..+..+...++....... ...|--+..+|...|++++|...|.+.....++ +..+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455555566666666677777776666665432111 223445666777777777777776665544232 3344456
Q ss_pred HHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC----CchHHHHHHHHHHHhCCCCCc
Q 006457 148 LTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT----VNGVTEGAHGFVIKRGFDSEV 223 (644)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~ 223 (644)
...|.+.|+.+.+...|+.... ..+-+..|...+-..|+..+ ..+.|..+.....+.- +.|.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k-------------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLK-------------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHH-------------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 6677777777777777777541 12223344444444444443 2333444444333332 3345
Q ss_pred cHHHHHHHHHHhcCCH------HHHHHHHhcC-CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcC--CCCCCh----
Q 006457 224 GVGNTLIDAYARGGHV------DVSRKVFDGM-IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKST--DVKCNA---- 290 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~---- 290 (644)
..|-.+..+|-...-+ ..|..++..- ....+...|.+...+...|.+.+|...|....... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 5555555555444332 2233222221 23456777888888888888888888888876220 122333
Q ss_pred -h-hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006457 291 -V-TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAG 365 (644)
Q Consensus 291 -~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (644)
. +--.+....-..++.+.|.+++..+.+.. +.-+..|--|.-+....+...+|...+..... .|+..|+-+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 1 22223344456678888888888888754 22222233333222333567788888877664 466778778878
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHhhhcCCCCChhHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSH------------AGLVQEGWHWLNTMGHEFNIEPGVEHYGC 432 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 432 (644)
|.....+..|.+-|....+. ...+|.++..+|.+.|.. .+..++|+++|..+.+ .-+.|...-+-
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 88888888888877766542 234788888888876643 2356788888888755 33446777788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC--CCCchhHHHHHHHHhhcCC
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE--PNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 508 (644)
+.-.++..|++.+|.++|.+.. ...+..+|-.+...|...|++..|.++|+..++.. .+++.....|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8889999999999999999873 22245689999999999999999999999998753 4567888899999999999
Q ss_pred chHHHHHHHHHhhCC
Q 006457 509 WEDVERTRSLMKNRR 523 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~ 523 (644)
|.+|.+.........
T Consensus 732 ~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-13 Score=138.47 Aligned_cols=479 Identities=11% Similarity=0.054 Sum_probs=334.4
Q ss_pred chHHHHHHhhcCCC-CCcchHHHHHHHH--HcCCCchHHHHHHHHhhHCC--CCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006457 22 NTNLTTLFNKYVDK-NNVFSWNSVIADL--ARGGDSVEALRAFSSMRKLS--LTPTRSTFPCAIKSCSALHDLHSGKQAH 96 (644)
Q Consensus 22 ~~~A~~~f~~~~~~-p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (644)
.+.|.+.|...... |+- ..--+..++ ...+++..|+.+|....... .+||+.. .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 58888888876543 222 233344444 35689999999999976532 3444432 2234556889999999999
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhC---CChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhh
Q 006457 97 QQAFIFGFHRD-VFVSSALIDMYSKC---GELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEE 171 (644)
Q Consensus 97 ~~~~~~g~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 171 (644)
..+++.. |+ +.++-.|--.-... ..+..+..++...-.. ..|++..+.|.+.|.-.|++..+..+...+...
T Consensus 223 ~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~- 299 (1018)
T KOG2002|consen 223 ERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN- 299 (1018)
T ss_pred HHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh-
Confidence 9998754 32 22222222111122 2344555555544333 468899999999999999999999999888631
Q ss_pred hccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 172 SECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV--GVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 172 ~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
...-..-...|-.+-+++-..|+++.|.+.|-...+. .++. ..+--|..+|.+.|+++.+...|+.+
T Consensus 300 ---------t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 300 ---------TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred ---------hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 1011112345677888888999999999999777665 4444 34556889999999999999999998
Q ss_pred CC--C-CHhHHHHHHHHHHHCC----ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH----HH
Q 006457 250 IE--K-DAVTWNSIIAIYAQNG----LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV----IK 318 (644)
Q Consensus 250 ~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~ 318 (644)
.. | +..+...|...|+..+ ..++|..++.+..+ ..+-|...|..+...+... ++..+...+..+ ..
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILES 445 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH
Confidence 33 3 5566667777777765 45777777777762 2244666676666665443 333335555444 34
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 319 MDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------KNV------RSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
.+-++.+.+.|.+...+...|++++|...|.+... +|. .+--.+...+-..++.+.|.+.|....+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 56567888999999999999999999999987653 222 12333555666778999999999999985
Q ss_pred CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHH
Q 006457 386 GVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKADFV 460 (644)
Q Consensus 386 g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~ 460 (644)
-|..+ .|..++...-..+...+|...+..... ....++..++.+.+.+.+...+..|.+-|+.. ...+|..
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 56655 344444333345778899999988865 44556677777888888888888888755443 3447877
Q ss_pred HHHHHHHHHHh------------cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 461 VWGSLLGACRI------------HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 461 ~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
+.-+|.+.|.. .+..+.|++.|.++++.+|.|..+-..++-+++..|++.+|..+|.+.++...
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 77777776642 23567899999999999999999999999999999999999999999998765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-12 Score=123.94 Aligned_cols=334 Identities=14% Similarity=0.157 Sum_probs=241.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--ccCCcHHH-HHHHHHHHHhCCCCChhHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS--ALHDLHSG-KQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 113 (644)
.+++=|.|+.. ..+|..+++.-+|+.|+..|+..+...-..|++..+ ...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566777664 467889999999999999997776665555554332 33333322 23344444444 2233333
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS 193 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ 193 (644)
+.|++.+ -+|+..+ ....+|..||.+.++--..+.|.+++++-. ....+.+..+|+.
T Consensus 191 ------K~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~------------~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHR------------AAKGKVYREAFNG 247 (625)
T ss_pred ------ccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHH------------HhhheeeHHhhhh
Confidence 3455444 5565555 477899999999999999999999999988 8888999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHH----hcC----CCCCHhHHHHHHHHHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVF----DGM----IEKDAVTWNSIIAIYA 265 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~ 265 (644)
+|.+.+-. .++.+..+|+...+.||..++|+++.+.++.|+++.|.+.+ .+| .+|...+|..+|..+.
T Consensus 248 lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 99886543 34889999999999999999999999999999988776544 444 6789999999999999
Q ss_pred HCCChhH-HHHHHHHhHH---cCCCCC----ChhhHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCc---hhHHHH
Q 006457 266 QNGLAAE-ALDVFDQMVK---STDVKC----NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD----LEES---VIVGTS 330 (644)
Q Consensus 266 ~~g~~~~-A~~~~~~m~~---~~~~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~ 330 (644)
+-++..+ |..++.++.. ...++| |...|...+..|.+..+.+.|.+++..+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 9888755 4444454431 112222 45678889999999999999999998775421 2232 234566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMKE----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
+..+.+.....+.-...|+.|.. |+..+-..++.+....|+++-.-++|..|...|..-+.....-++.-.
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 77888888889999999998874 566777778888888888888888888888877544444333333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-13 Score=126.17 Aligned_cols=256 Identities=16% Similarity=0.189 Sum_probs=176.6
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 006457 25 LTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGF 104 (644)
Q Consensus 25 A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 104 (644)
|.-+|+..|. ...+|..||.++|+--..+.|.+++++......+.+..+||.+|.+.+- ..++++..+|+...+
T Consensus 196 AdL~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 ADLLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc
Confidence 3345554443 4568999999999999999999999999988789999999999987653 334899999999999
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHH----HHhhCCCC--CCCeecHHHHHHHHHhCCChhH-HHHHHHHhHhhhhccCCC
Q 006457 105 HRDVFVSSALIDMYSKCGELSDARK----LFDEIPQR--IRNIVSWTSMLTGYVQNDNARE-ALLLFKEFLLEESECGGA 177 (644)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~ 177 (644)
.||..|+|+++...++.|+++.|.+ ++.+|++. .|...+|..+|..+.+.+++.+ |..++.+++..-.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt----- 344 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT----- 344 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc-----
Confidence 9999999999999999999887665 45555554 6899999999999999988854 4444554431100
Q ss_pred CCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC----CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 006457 178 SENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRG----FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK 252 (644)
Q Consensus 178 ~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 252 (644)
......+.| |..-|...++.|.+..+.+.|.+++..+.... +.|+..
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------------------- 396 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------------------- 396 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------
Confidence 000122233 56678889999999999999999988764321 111100
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD 320 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 320 (644)
...-|..+....++....+.-+..|..|. -.-.-|+..+...+++|....+.++...+++..++..|
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 11223334444445555555555555555 44455555666666666655566666656655555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-11 Score=121.76 Aligned_cols=488 Identities=11% Similarity=0.066 Sum_probs=358.1
Q ss_pred HhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQ 94 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 94 (644)
...-..++|+-++.+..+- | ++..|. +|++..-++.|..+++..++. ++.+...|.+....=-..|+.+....
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3344555677666665431 1 233333 444555677777777777653 44466666665555556666666666
Q ss_pred HHHHHH----HhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHH
Q 006457 95 AHQQAF----IFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 95 ~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (644)
+.+.-+ ..|+..+...|-.=...+-+.|..-.+..+...+... ..--.+|+.-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 655433 3466666666666666666666666666655544332 12345677777777777777777777776
Q ss_pred hHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 006457 167 FLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKV 245 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (644)
.+ .+-| +...|..+...--..|..+....++..++..- +-....|-....-+-..|++..|..+
T Consensus 542 al--------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 542 AL--------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred HH--------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 53 2233 34445545444455667777777777666542 33455666667777888999999999
Q ss_pred HhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 246 FDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 246 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
+....+ .+...|-+-+..-..+.+++.|..+|.+.. ...|+...|.--+..---.+..++|.+++++.++. ++
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp 682 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP 682 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence 888733 367789999999999999999999999987 46677777766666666788999999999988885 34
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.-...|-.+...+-..++++.|++.|..-.+ |+ +..|-.+...=-+.|..-.|..++++..-.+ +-|...|...+.
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 5566788888999999999999999987664 44 4578888887788899999999999998764 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.-.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++--.+.+.+++... |+.+.-+....+....+++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877 4666788899999999999998888888888753 5556666777788888999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEe
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVEL 535 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 535 (644)
+.|+++++.+|++..++..+...+...|.-++-.++++...... |.-|..|..+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 99999999999999999999999999999999999998876543 4456666543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-13 Score=126.05 Aligned_cols=463 Identities=11% Similarity=0.078 Sum_probs=306.5
Q ss_pred hHHHH---HHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCCh----hHH
Q 006457 40 SWNSV---IADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC-AIKSCSALHDLHSGKQAHQQAFIFGFHRDV----FVS 111 (644)
Q Consensus 40 ~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~ 111 (644)
+|+.| .+-|..+....+|+..|+-+.+...-||.-.+.. +-+.+.+.+.+..|.+.+...+..-...+. .+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45544 4456667778899999998888777777654432 234556778889999999888765322222 234
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhH
Q 006457 112 SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAI 191 (644)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~ 191 (644)
+.+--.+.+.|+++.|..-|+...+..||..+--.|+-.+..-|+.++..+.|.+|..-.........-...-.|+...+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 44445678899999999999988776677665444555555678889999999998732111100001122223444444
Q ss_pred HHHHH-----HhhcCCC--chHHHHHHHHHHHhCCCCCccH-------------HH--------HHHHHHHhcCCHHHHH
Q 006457 192 ASVLS-----ACSRVTV--NGVTEGAHGFVIKRGFDSEVGV-------------GN--------TLIDAYARGGHVDVSR 243 (644)
Q Consensus 192 ~~ll~-----~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A~ 243 (644)
+..+. -..+... .+++.-.-..++.--+.|+-.. +. .-..-|.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 43332 2222211 1111111111111112222110 00 1122467889999998
Q ss_pred HHHhcCCCCCHhHHHHH-----HHHHHHC-CChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 244 KVFDGMIEKDAVTWNSI-----IAIYAQN-GLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 244 ~~~~~~~~~~~~~~~~l-----i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
+++.-...+|..+-++. +--|.+- .++.+|.+.-+.... .-+-+......-.+.....|+++.|...+.+.+
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 88887766544332221 2223333 345666655554441 112222222222223345689999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF 394 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 394 (644)
...-.-....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+...|++++-+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765444444555 3345678899999999998765 356667777888899999999999999877653 55578888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hhc
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKADFVVWGSLLGAC-RIH 472 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-~~~ 472 (644)
.-|...|-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|++.. ++|+..-|..++..| ++.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8999999999999999998766522 345578888888889999999999999999874 799999999999666 788
Q ss_pred CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 473 KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
|++..|..+++...+..|.+....-.|..++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999999888884
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-11 Score=128.58 Aligned_cols=331 Identities=12% Similarity=0.143 Sum_probs=194.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
..-...+.+...|+.++|.+++.++... | +...|.+|...|-+.|+.++++..+-..-... +-|...|..+-.-...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344445555569999999999987542 2 67789999999999999999988776555432 2255677777777888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC--Cee----cHHHHHHHHHhCCChhH
Q 006457 86 LHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR--NIV----SWTSMLTGYVQNDNARE 159 (644)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~ 159 (644)
.|.+.+|.-.+..+++.. +++....-.-..+|-+.|+...|..-|.++....| |.. .--..++.|...++.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 899999999999999876 44555555567788888999988888777765422 111 11122344444555566
Q ss_pred HHHHHHHhHhhhhcc---------------------------------CCCCCCC-------------CCccCCHhhH--
Q 006457 160 ALLLFKEFLLEESEC---------------------------------GGASENS-------------DNVFVDSVAI-- 191 (644)
Q Consensus 160 A~~~~~~m~~~~~~~---------------------------------~~~~~~~-------------~~~~p~~~t~-- 191 (644)
|++.+......+... ...+... .--.|+...|
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 666555554211000 0000000 0000111111
Q ss_pred --HHHHHHhhcCCCchHHHHHHHHHHHhCCCC--CccHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHH
Q 006457 192 --ASVLSACSRVTVNGVTEGAHGFVIKRGFDS--EVGVGNTLIDAYARGGHVDVSRKVFDGMIE----KDAVTWNSIIAI 263 (644)
Q Consensus 192 --~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~ 263 (644)
.-+.-+..+....+....+.....+..+.| ++..+.-+.++|...|++.+|.++|..+.. .+...|--+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 112223344445555555555555555332 345566677777777777777777776633 255667777777
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCchhHHHHHHHH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--------LEESVIVGTSIIDM 334 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--------~~~~~~~~~~li~~ 334 (644)
|...|.+++|++.|.... ...|+ .-.-.++-..+.+.|+.++|.+.+..+..-+ ..|.....-...+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHhhHHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 777777777777777766 22333 2233344455566677777777776654211 22333333444555
Q ss_pred HHhcCCHHH
Q 006457 335 YCKCGQVDL 343 (644)
Q Consensus 335 ~~~~g~~~~ 343 (644)
|.+.|+.++
T Consensus 536 l~~~gk~E~ 544 (895)
T KOG2076|consen 536 LFQVGKREE 544 (895)
T ss_pred HHHhhhHHH
Confidence 556665544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-10 Score=109.80 Aligned_cols=422 Identities=11% Similarity=0.109 Sum_probs=330.3
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHH
Q 006457 82 SCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREA 160 (644)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 160 (644)
+.....+.+.|+-++....+.- +.+.. |.-+|++..-++.|..+++...+. +.+...|.+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3344556666888888877753 33333 444566677889999999888776 45788888877777788999888
Q ss_pred HHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhcCC
Q 006457 161 LLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE--VGVGNTLIDAYARGGH 238 (644)
Q Consensus 161 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 238 (644)
.+++.+-...- ...|+..+...|..=..+|-..|..-.+..+....+..|+... -.+|+.-...|.+.+.
T Consensus 460 ~kii~rgl~~L--------~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 460 EKIIDRGLSEL--------QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHHHHH--------hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 88877644221 1778999999998888899999999999999998888887543 4578888889999999
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
++-|..+|....+ .+...|...+..--..|..++-..+|++... ..+-....+.......-..|++..|+.++..
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999987744 3667788877777778899999999999872 3344445555555666677999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-I 392 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 392 (644)
+.+.. +.+...+-+-+..-....+++.|+.+|.+... +....|.--+..-.-.++.++|++++++.++. -|+- .
T Consensus 610 af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 610 AFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 98876 44788888999999999999999999998764 56677777777777788999999999998874 4554 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 470 (644)
.|..+...+-+.++++.|...|..=.+ ..+-....|-.|...=.+.|.+-.|..++++.. .+.|...|-..+..-.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 677777888889999999988876533 233457788888888899999999999999873 3447889999999999
Q ss_pred hcCChhHHHHHHHHhhccCCC------------------------------CchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPN------------------------------NCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
++|+.+.|..+..++++--|+ |+.....++.++....+++.|++.|....
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888874443 35566677788888888999999988887
Q ss_pred hCC
Q 006457 521 NRR 523 (644)
Q Consensus 521 ~~~ 523 (644)
+.+
T Consensus 845 k~d 847 (913)
T KOG0495|consen 845 KKD 847 (913)
T ss_pred ccC
Confidence 654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=140.32 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=111.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH-HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA-VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
...+.+.|++++|++++++.. ....+|+...|-. +...+...++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~-~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAA-QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455666677777777775443 2222344444333 333444566777777777777665422 45556667666 6788
Q ss_pred CHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 340 QVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG-VRPNYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 340 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
++++|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876533 466677888888999999999999999977533 345677788888889999999999999999
Q ss_pred HhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 417 MGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 417 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+ ..| +......++..+...|+.+++.+++.... ...|...|..+..++...|+.++|...++++.+.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 965 456 47788899999999999999888877652 234666889999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.....++.++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-10 Score=106.67 Aligned_cols=486 Identities=11% Similarity=0.074 Sum_probs=342.3
Q ss_pred HHhcCCchHHHHHHhhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVD---KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSG 92 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (644)
--.+++...|+.+|++... + +...|-.-+..-.++.....|..+|+.....=++.|..=|-. +-.=-..|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHH
Confidence 3346788899999998653 4 777888888888999999999999999876433333332322 2222356899999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhh
Q 006457 93 KQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEES 172 (644)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 172 (644)
+++|+.-.. ..|+...|++.|+.=.+-..++.|..+++...--.|++.+|--...-=-+.|+...|..+|......
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 999998886 4799999999999999999999999999987655699999988888888899999999998886521
Q ss_pred ccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhcCCHHHHHHHH---h
Q 006457 173 ECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE--VGVGNTLIDAYARGGHVDVSRKVF---D 247 (644)
Q Consensus 173 ~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~---~ 247 (644)
...-..+...|.+...--.+....+.|.-++..++..= +.+ ...|..+...=-+-|+.....+.. +
T Consensus 237 --------~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 237 --------LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 11111122223333333334566778888888877652 222 345555555555556543333222 2
Q ss_pred c-----CCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh-------hHHHHHHHH---HccccHHHH
Q 006457 248 G-----MIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV-------TLSAVLLAI---AHLGVLRLG 309 (644)
Q Consensus 248 ~-----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------t~~~ll~a~---~~~~~~~~a 309 (644)
+ +... |-.+|-..+..--..|+.+...++|+... .+++|-.. .|.-+=-+| ....+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2 2222 66788888888888899999999999996 46777432 222222222 356789999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYC----KCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
+++++..++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++...|..=.+.++++....+|++.+
T Consensus 386 r~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988 34555666665555554 6789999999998766 3677788888888889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 006457 384 KAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVW 462 (644)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 462 (644)
.-+ +-|..+|......-...|+.+.|..+|..++.+..+......|.+.|+.=..+|.++.|..+++++ ...+-..+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 854 447788888888888899999999999999776555555678889999999999999999999887 233445578
Q ss_pred HHHHHHHH-----hcC-----------ChhHHHHHHHHhhcc----CCCCc--hhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 463 GSLLGACR-----IHK-----------NVDLGEIAAKKLFEL----EPNNC--GYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 463 ~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-++...-. ..+ +...|..+|+++... .|... ...-...++-...|...+...+-..|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77764443 333 556788888887652 34321 122223333455666666666666664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-11 Score=123.45 Aligned_cols=330 Identities=16% Similarity=0.115 Sum_probs=252.6
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHH
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 274 (644)
+++ |+++.|.+++.++++.. +.....|..|...|-..|+.+++...+--. ...|...|-.+..-..+.|.+++|.
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444 99999999999999885 557788999999999999999998776443 4558889999999999999999999
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHHh
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGT----SIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~ 350 (644)
-.|.+.. +. -+++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++.
T Consensus 228 ~cy~rAI-~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAI-QA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHH-hc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998 32 35555566666778899999999999999998865433433333 345667777888899888887
Q ss_pred cCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHH
Q 006457 351 MKE--K---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF--------------------------VSVLS 399 (644)
Q Consensus 351 ~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~ 399 (644)
... . +...++.++..|.+...++.|......+......+|..-+ .-+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 664 2 4457889999999999999999988888762222222211 11222
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCC
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVK---ADFVVWGSLLGACRIHKN 474 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~ 474 (644)
+..+....+....+...... ..+.| +...|.-+.++|...|++.+|+.+|..+... -+...|--+...+...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33344333333333333333 35334 5788999999999999999999999988322 267799999999999999
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
+++|.+.+++++.+.|++..+.+.|+.+|.+.|+.++|.+.+..|..-+....+++.|
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999987444333345544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-10 Score=111.65 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=168.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|+.-.+..-++..++....++ ..|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4667777777887777653332 2366667778888899999999987764 36667777777777778899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 006457 380 YKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA 457 (644)
Q Consensus 380 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 457 (644)
++.+. +.| +...|..+-.+.-+.+.++++...|+..++ .++.-++.|+.....+.-.+++++|.+.|+.. ...|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99887 455 456777777777888999999999999976 46667889999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 D---------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+ +.+-..++..- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 22333333332 44899999999999999999999999999999999999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=117.12 Aligned_cols=430 Identities=12% Similarity=0.103 Sum_probs=286.1
Q ss_pred ccHHHHHH---HHhccCCcHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHhhCCCCCCC------eec
Q 006457 74 STFPCAIK---SCSALHDLHSGKQAHQQAFIFGFHRDVFVS-SALIDMYSKCGELSDARKLFDEIPQRIRN------IVS 143 (644)
Q Consensus 74 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 143 (644)
.||+.|.+ -|.......+|...++-+++...-|+.... -.+-+.|.+...+.+|.++++-.....|+ +..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 35655544 334445567788888888887766665432 23456678888999999988665544332 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc
Q 006457 144 WTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV 223 (644)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 223 (644)
.+.+.-.+.+.|++++|+..|+... ...||-.+-..++-.+...|+.++.++.|..++.....+|.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m--------------~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCM--------------EEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHH--------------HhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 5566667889999999999999865 34688777777777777789999999999988764322222
Q ss_pred cH--------HHHHHHHHHhc---------CC--HHHH----HHHHhcCCCCCHh---HHH----------H--------
Q 006457 224 GV--------GNTLIDAYARG---------GH--VDVS----RKVFDGMIEKDAV---TWN----------S-------- 259 (644)
Q Consensus 224 ~~--------~~~li~~~~~~---------g~--~~~A----~~~~~~~~~~~~~---~~~----------~-------- 259 (644)
.- -..|++--.+. .+ .+.+ .++..-+..||-. -|. .
T Consensus 345 dkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 345 DKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 11 12222222221 11 1111 2222222333211 011 0
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCChhh--HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT--LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
-...|.++|+++.|+++++-.. ...-+.-+.. -...+.-.....++..|.++-+..+... .-+....+.-.+.-..
T Consensus 425 ka~~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1235789999999999998886 3322222211 1122222223345667776666555432 1122222222223345
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKEKNVRSWTAMIA---GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.|++++|.+.|.+....|...-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 789999999999998887665444433 466789999999999988753 3456778888899999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG-MKV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
..... -++.|+.+.+.|.+.|-+.|+-..|.+..-. ... +.|..+..-|...|....-++.++..|+++--+.|+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 87732 4555789999999999999999999987544 332 3355566667777777788899999999999999987
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..-...++.++.+.|++..|..+++...++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 655566777888999999999999998754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-11 Score=121.55 Aligned_cols=447 Identities=13% Similarity=0.087 Sum_probs=244.9
Q ss_pred HHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 006457 59 RAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRI 138 (644)
Q Consensus 59 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 138 (644)
.++-.+...|+.||.+||..+|..|+..|+.+.|- +|..|.....+....+++.++.+....++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C--
Confidence 45667777888888888888888888888888777 8888877777777788888888887778777665 3
Q ss_pred CCeecHHHHHHHHHhCCChhHHHHHHHH-hH---hhhhccCCCC---------CCCCCccCCHhhHHH----------HH
Q 006457 139 RNIVSWTSMLTGYVQNDNAREALLLFKE-FL---LEESECGGAS---------ENSDNVFVDSVAIAS----------VL 195 (644)
Q Consensus 139 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~---~~~~~~~~~~---------~~~~~~~p~~~t~~~----------ll 195 (644)
|...+|+.|..+|.+.|+... ++..++ |. ..-......+ --..+.-||..+... ++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887654 222222 11 1100000000 001223344332211 11
Q ss_pred HHh------hcCC-----------CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CH
Q 006457 196 SAC------SRVT-----------VNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK----DA 254 (644)
Q Consensus 196 ~~~------~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 254 (644)
+.. +..+ +..-.+++.......--.+++.++.++++.-...|+++.|..++.+|.++ +.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 111 0000 11112233332222211466777777777777777777777777777543 12
Q ss_pred -hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHH-----------HHHHHHH----
Q 006457 255 -VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKC-----------IHDQVIK---- 318 (644)
Q Consensus 255 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~-----------i~~~~~~---- 318 (644)
..|- |+-+ .+....+..+++.|. ..|+.|++.|+..-+..+...|....+.. +...+.+
T Consensus 240 HyFwp-Ll~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 240 HYFWP-LLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccchh-hhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 2232 3322 555666666666666 66777777777776666666554332211 0111110
Q ss_pred ---------------------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcC
Q 006457 319 ---------------------MDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-------NVRSWTAMIAGYGMHC 370 (644)
Q Consensus 319 ---------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g 370 (644)
.|+.....+|...+. ....|.-++..++-..+..| ++..|..++.-|-+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 011111222221111 11234444444444444322 2223333322221110
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHH
Q 006457 371 ----------------------RAREALDLFYKMIKAGVRPNYI----------------------------TFVSVLSA 400 (644)
Q Consensus 371 ----------------------~~~~A~~~~~~m~~~g~~p~~~----------------------------t~~~ll~a 400 (644)
...+..++... ..||.. .-+.++..
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 11111111111 122211 12233344
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCh
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-----VKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~ 475 (644)
|+..-+..+++..-+.. +..-+ ...|..||+.+.....+++|..+..+.. ..-|..-+..+.....+++..
T Consensus 469 l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 44444444444333332 11111 2578899999999999999999998873 223555677888888899988
Q ss_pred hHHHHHHHHhhcc---CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 476 DLGEIAAKKLFEL---EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 476 ~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
..+..+++++.+. .|.......-+.+..+..|+.+...++.+-+..-|+.. .|.-|
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888888877663 34445666677777888999999999999999888865 34434
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-13 Score=129.62 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=86.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH-HhhcCCCchHHHHHHHHHHHhCCCCCcc
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS-ACSRVTVNGVTEGAHGFVIKRGFDSEVG 224 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 224 (644)
.+...+.+.|++++|++++++-. ....+|+...|..++. .+...++.+.|.+.++.+.+.+-. ++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~------------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAA------------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------------ccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 34666778888888888886542 2222455555554444 344567777888887777766522 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMI--EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
.+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.++++........+++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 56666666 57777777777776652 2355666677777777778877777777765333344556666666677777
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|+.++|...++..++.. |.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 777777777777777654 3345666667777777777776666655443 245556667777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
++..+.. +.|......+..++...|+.++|.++...+
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccc
Confidence 7766642 335666666667777777777777666655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-11 Score=120.37 Aligned_cols=274 Identities=10% Similarity=0.038 Sum_probs=173.5
Q ss_pred cCCHHHHHHHHhcCCCC--CHh-HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHH--HHHHHHHccccHHHHH
Q 006457 236 GGHVDVSRKVFDGMIEK--DAV-TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLS--AVLLAIAHLGVLRLGK 310 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a~ 310 (644)
.|+++.|++.+...++. ++. .|-....+..+.|+++.|.+.|.++. ...|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---ELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777776665432 122 23222333467777777777777775 2344443322 2244556677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHH
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV-----------RSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776655 44566667777777777777777777777664221 12333333333444455556666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD 458 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 458 (644)
+.+.+. .+.+......+..++...|+.++|...++...+ ..|+.... ++.+....++.+++++.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 655432 344666777777888888888888888877744 34444322 222333457888888777765 33443
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 459 -FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 459 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.....++...|...+++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677788888888888888888888888875 456778888888888888888877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=123.89 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=168.1
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--LEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
+..+|+.+|.... ..+.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+..--+
T Consensus 334 ~~~~A~~~~~klp--~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLP--SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhH--HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567777777743 3334444666777778888888888888888877643 12345666666544332211111111
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 347 AFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
-+-.+......+|-++..+|.-+++.+.|++.|++..+ +.| ..++|+-+..-+.....+|.|...|+.. +..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 11112223456888888888888888888888888877 455 5677777777777777888888888766 335
Q ss_pred ChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 426 GVEHYGC---MVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 426 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
|+.+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++.++|.++..-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5556655 456688888888888888876 5566 4445555667777888888888888888888888888888888
Q ss_pred HHHhhcCCchHHHHHHHHHhh
Q 006457 501 NIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 888888888888888888875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-10 Score=106.56 Aligned_cols=300 Identities=14% Similarity=0.127 Sum_probs=189.0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHCC
Q 006457 195 LSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK------DAVTWNSIIAIYAQNG 268 (644)
Q Consensus 195 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g 268 (644)
..++......+.+.+-.......|++.+...-+-...+.-...++|.|+.+|+++.+. |..+|+.++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3344455566666666666677777766666666666666777888888888887543 445666555 33333
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAF 348 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 348 (644)
+.. +..+.+-. ..--+--+.|...+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|.+-+
T Consensus 312 ~sk--Ls~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSK--LSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHH--HHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 221 12221111 11112233466666677777777788888888877765 445667777777788888888888777
Q ss_pred HhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 349 NQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 349 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
+...+ .|-..|-.|.++|.-.+...-|+-.|++..+. +| |+..|.+|..+|.+.++.++|+..|..... .-.
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccc
Confidence 76654 46677777888888888777788888877773 44 667777888888888888888888877754 223
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+...+..|.++|-+.++.++|...|.+. + +.|..+ .---|..-+.+.+++++|.....+...-++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~----- 538 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET----- 538 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----
Confidence 35567777788888888888877776654 1 222111 111133455666777766555444433322
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..++|..+++++++
T Consensus 539 ------------e~eeak~LlReir~ 552 (559)
T KOG1155|consen 539 ------------ECEEAKALLREIRK 552 (559)
T ss_pred ------------hHHHHHHHHHHHHH
Confidence 24666666666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=118.55 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=152.8
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHH--HHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhH
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGN--TLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 272 (644)
..+.|+.+.+.+.+..+.+. .|+..... .....+...|+++.|...++.+.+ .++.....+...|.+.|++++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 34555555555555555432 23332221 223455555555555555555422 134445555555555555555
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|.+++..+. +.+..++. ....+- ...|..++.......+.+...++++.++
T Consensus 206 a~~~l~~l~-k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMA-KAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHH-HcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 555555554 22221111 010000 0122233333334445566666666665
Q ss_pred C---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 353 E---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 353 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
+ .+......+..++...|+.++|.+++++..+. +||.... ++.+....++.+++.+..+...+. .+-|...
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHH
Confidence 3 36667777888888888888888888888773 4555222 233444558888888888887552 3345667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+.++..++.+.|++++|.+.|+++ ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 778888888888888888888876 567888888888888888888888888888887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=123.29 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=217.5
Q ss_pred CHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLGKCIH 313 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~i~ 313 (644)
+..+|...|...+.. .......+..+|...+++++|.++|+...+...... +..+|++.|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 468899999887543 334556678899999999999999999974333322 456788877655322 222223
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 314 DQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
.+-.-.--+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223567889999999999999999999999998864 456888888888889999999999999875 4443
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006457 391 -YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 391 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 466 (644)
...|-.+...|.+.++++.|+-.|+.+ ..+.| +.....++...+-+.|+.|+|+++++++ ...| |+..---..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA---~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKA---VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhh---hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 346777888999999999999999998 45777 4677788889999999999999999987 3333 455545556
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..+...+++++|+..++++.++-|++...|.+++.+|-+.|+.+.|..-|.-+.+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66778899999999999999999999999999999999999999999888777653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-08 Score=98.52 Aligned_cols=450 Identities=10% Similarity=0.036 Sum_probs=325.6
Q ss_pred HHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 006457 46 ADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELS 125 (644)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 125 (644)
.--...+++..|..+|+...... .-+...|..-+..=.+...+..|+.+++..+..=...| ..|-..+.+=-..|++.
T Consensus 81 qwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccH
Confidence 33345667788999999988744 23455566666666788889999999999987543333 34555566666779999
Q ss_pred HHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCch
Q 006457 126 DARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNG 205 (644)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 205 (644)
.|.++|+...+..|+..+|++.|.-=.+.+.++.|..+|++.. -+.|+..+|.--.+--.+.|...
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV--------------~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV--------------LVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------------eecccHHHHHHHHHHHHhcCcHH
Confidence 9999999987777999999999999999999999999999976 45699999998888888999999
Q ss_pred HHHHHHHHHHHh-CC-CCCccHHHHHHHHHHhcCCHHHHHHHHhcC----CCC-CHhHHHHHHHHHHHCCCh---hHHHH
Q 006457 206 VTEGAHGFVIKR-GF-DSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEK-DAVTWNSIIAIYAQNGLA---AEALD 275 (644)
Q Consensus 206 ~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-~~~~~~~li~~~~~~g~~---~~A~~ 275 (644)
.++++++.++.. |- ..+...+.+....=.++..++.|.-+|.-. +.. ....|......=-+-|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 21 112334555555556677888888887654 332 233444444433444553 33332
Q ss_pred -----HHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCc-h-hHHHHHHHH--------HHhcCC
Q 006457 276 -----VFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEES-V-IVGTSIIDM--------YCKCGQ 340 (644)
Q Consensus 276 -----~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-~-~~~~~li~~--------~~~~g~ 340 (644)
-|+.++ ..-+-|-.++--.+......|+.+..+++++.++..- +|- . ..|.-.|-. -....+
T Consensus 305 ~KRk~qYE~~v--~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 305 GKRKFQYEKEV--SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhHHHHHH--HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233444 2234466677777777788899999999999998743 442 1 112222111 134678
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006457 341 VDLARKAFNQMKE--K-NVRSWTAM----IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 341 ~~~A~~~~~~~~~--~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (644)
++.+.++|+...+ | .-.|+.-+ ..--.++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|....+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8999999987664 2 33344443 333456778899999988876 5789999999999999999999999999
Q ss_pred HHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 414 LNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 414 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
++.... ..| +..+|......=...|+.+.|..+|+-+-.+| ....|.+.|..-...|.++.|..+++++++.
T Consensus 460 YEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999854 445 57788888888889999999999999774444 3568888888888999999999999999998
Q ss_pred CCCCchhHHHHHHHHh-----hcC-----------CchHHHHHHHHHh
Q 006457 489 EPNNCGYHVLLSNIYA-----NAG-----------RWEDVERTRSLMK 520 (644)
Q Consensus 489 ~p~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 520 (644)
.+... .+...+..-. +.| ....|.++|+...
T Consensus 537 t~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 537 TQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 88754 6777666443 333 4556777776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-10 Score=114.71 Aligned_cols=282 Identities=11% Similarity=-0.024 Sum_probs=158.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccH-HHHHHHHHHhcCCHHHHHHHHhcCCC--CC--HhHHHHHHHHHHHCCChhHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGV-GNTLIDAYARGGHVDVSRKVFDGMIE--KD--AVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~ 274 (644)
..|+++.|++......+. .|++.. +-....++.+.|+.+.|.+.|.+..+ |+ ....-.....+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457788888877665554 333322 33345667777888888888877522 22 223333466677788888888
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcCCHHHHHHH
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY-------CKCGQVDLARKA 347 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~ 347 (644)
+.++.+. ... +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ ......+...+.
T Consensus 174 ~~l~~l~-~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLL-EMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHH-HhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888886 222 3344566677777788888888888888887776443322211111111 112223344444
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhc
Q 006457 348 FNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF---VSVLSACSHAGLVQEGWHWLNTMGHEF 421 (644)
Q Consensus 348 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (644)
++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 544443 36666777777777777777777777777764 3333311 111111223355566666665554422
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 422 NIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG---MKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122114445566666666666666666662 23455655555666666666666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-10 Score=114.94 Aligned_cols=282 Identities=11% Similarity=0.006 Sum_probs=205.1
Q ss_pred HhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc--cHHHH
Q 006457 152 VQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV--GVGNT 228 (644)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 228 (644)
...|+++.|.+.+.+.. ...|++. .+.....+....|+.+.+.+.+..+.+.. |+. .+.-.
T Consensus 95 ~~~g~~~~A~~~l~~~~--------------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~ 158 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNA--------------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIA 158 (409)
T ss_pred HhCCCHHHHHHHHHHHh--------------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHH
Confidence 45799999999998754 3345533 34444566778899999999999987653 444 34455
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH---Hc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI---AH 302 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~---~~ 302 (644)
....+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++.... +.++.+..........+. ..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999843 367788899999999999999999999998 555433222211111221 22
Q ss_pred cccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhh---HHHHHHHHHhcCCHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDL---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRS---WTAMIAGYGMHCRARE 374 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~ 374 (644)
.+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2223333345555544331 24788888999999999999999999998875 43331 1222233344578889
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 375 ALDLFYKMIKAGVRPNY---ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
+++.+++..+. .|+. ....++...|.+.|++++|.++|+.... ....|+...+..+...+.+.|+.++|.++++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999888874 4544 4566888899999999999999995322 4678999999999999999999999999998
Q ss_pred hC
Q 006457 452 GM 453 (644)
Q Consensus 452 ~~ 453 (644)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 64
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-09 Score=98.09 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=256.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCC-ChhHHHHHHHHhHhhhhc------------
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQND-NAREALLLFKEFLLEESE------------ 173 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~------------ 173 (644)
+...-...+..|...++.+.|.....+++.. ....--|.|+.-+.+.| +..++.--+.+.....+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh
Confidence 3444555677888888888898888888763 23333444444333332 222222222222211111
Q ss_pred -----cCCCCCCCCCccCCHhhHHHHHHHhhc--CCCchHHHHHHHHHHHh-CCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 006457 174 -----CGGASENSDNVFVDSVAIASVLSACSR--VTVNGVTEGAHGFVIKR-GFDSEVGVGNTLIDAYARGGHVDVSRKV 245 (644)
Q Consensus 174 -----~~~~~~~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (644)
...-.+....+.|+..+...-+.+++. .++...+-+.+-.+... -++.|+....++.+.|...|+.++|+..
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 022223344455555566666665543 34444455555544443 4667788999999999999999999999
Q ss_pred HhcCCCCCHhHHHHH---HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 246 FDGMIEKDAVTWNSI---IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 246 ~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
|++...-|+.+...| .-.+.+.|+.++...+...+. . -..-+...|..-+...-...+++.|..+-+..++.. +
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf-~-~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~ 331 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF-A-KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-P 331 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH-h-hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-c
Confidence 998755554443332 233567888888888887776 2 111222233333333445677888888888887755 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMK--EK-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL- 398 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 398 (644)
.+...+-.-...+...|+.++|.-.|+... .| +..+|.-|+.+|...|++.+|.-+-+...+. ++.+..+++-+.
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 344445444566778899999999998654 33 7889999999999999999999888776654 344556655442
Q ss_pred HHHHc-cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSH-AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 475 (644)
..|.. ..--++|..++++. ..+.|+ ....+.+...+.+.|..+++..++++. ...||....+.|...++..+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 33332 23347888888876 456776 566778889999999999999999986 6789999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCchh
Q 006457 476 DLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+|...|..++.++|++..+
T Consensus 488 Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhcCccchHH
Confidence 99999999999999998443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-09 Score=103.14 Aligned_cols=260 Identities=11% Similarity=0.060 Sum_probs=204.9
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
+...-.-..-+...+++.+.++++....+.. ++....+..-|..+...|+..+-..+-..+++. .|....+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3334444556677899999999999987333 444445555556667777766665555666654 4667788888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEKN---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 410 (644)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-...-+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888999999999999876543 358999999999999999999999887764 222333344556678889999999
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK--------VKA-DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
.++|... .++-| |+...+-+.-+....+.+.+|..+|+..- .++ -..+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A---~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQA---LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHH---HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999988 46777 57777888777788899999999998761 111 23468888999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 481 AAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+++++.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-10 Score=107.96 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999987653 245678888889999999999999999998864 3456677788888
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
+...|++++|...++.+............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998653222334567778888999999999999999876 3334 456788888999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-08 Score=96.67 Aligned_cols=252 Identities=12% Similarity=0.108 Sum_probs=168.0
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhc
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL--EESVIVGTSIIDMYCKC 338 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~ 338 (644)
..+|-.....++++.-..... ..|++-....-+....+.-...++++|+.+|+++.+... -.|..+|+.++ |.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 345555556666666666665 455554444444444444566677778888877777531 12455665554 3332
Q ss_pred CC--HH-HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 006457 339 GQ--VD-LARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 339 g~--~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.+ +. -|..++ .+.+--+.|.-++.+-|.-.++.++|...|++..+. .|. ...|+-+..-|....+...|.+-+
T Consensus 311 ~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 11 122222 122223344555566677777788888888888774 343 345666667777778888888888
Q ss_pred HHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 415 NTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+.++. +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++...-.
T Consensus 388 RrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 388 RRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 87743 444 6677888888888888888888888876 4555 6678888888888888888888888888888766
Q ss_pred CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 492 NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...+..|+++|-+.++.++|.+.+++-.+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 778888899999999999999888887664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-07 Score=94.62 Aligned_cols=493 Identities=11% Similarity=0.102 Sum_probs=291.3
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCCC-C---CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N---NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIK 81 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 81 (644)
+..|..-++.+.++|++..-+..|++.... | -...|...+.-..+.+-++-++.++++-.+. .| ..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 456777788889999999999999874321 1 3356888888888889999999999998873 33 33566677
Q ss_pred HHhccCCcHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCC---hHHHHHHHhhCCCCCCC--eecHHHHHHH
Q 006457 82 SCSALHDLHSGKQAHQQAFIFG------FHRDVFVSSALIDMYSKCGE---LSDARKLFDEIPQRIRN--IVSWTSMLTG 150 (644)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~--~~~~~~li~~ 150 (644)
.++..+++++|.+.+...+... -+.+...|.-+.+..++.-+ --....+++.+....+| ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888899999988888776321 14455667777666665432 22344556666554344 4568999999
Q ss_pred HHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCC----------------------chHHH
Q 006457 151 YVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTV----------------------NGVTE 208 (644)
Q Consensus 151 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~ 208 (644)
|.+.|.++.|-++|++-.+. .....-|..+..+|+.... ++...
T Consensus 258 YIr~g~~ekarDvyeeai~~--------------v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--------------VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--------------heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 99999999999999886521 1222334444444432211 11111
Q ss_pred HHHHHHHHhC-----------CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CC------CHhHHHHHHHHHHHCC
Q 006457 209 GAHGFVIKRG-----------FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EK------DAVTWNSIIAIYAQNG 268 (644)
Q Consensus 209 ~~~~~~~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~------~~~~~~~li~~~~~~g 268 (644)
.-++.+...+ -+.++..|..-+.. ..|+..+-...|.+.. +| -...|..+.+.|-.+|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 2222222111 01111122221111 2344444444444431 11 2235777788888888
Q ss_pred ChhHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHccccHHHHHHHHHHHHHhC-----------CCC------chhHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-----------LEE------SVIVG 328 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----------~~~------~~~~~ 328 (644)
+.+.|..+|++.. .-..+-- ..+|......=.+..+++.|..+.+...-.. .++ +..+|
T Consensus 402 ~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 8888888888776 3222211 1223333333334456666766666554221 111 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIA---GYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACS-- 402 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~-- 402 (644)
...++.--..|-++....+++++.+--+.|=..+++ -+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 555666666777888888888877543333222222 2334556778888877655442234443 4555444332
Q ss_pred -ccCCHHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCh
Q 006457 403 -HAGLVQEGWHWLNTMGHEFNIEPGV--EHYGCMVDLLGRAGKLKEAYDLIEGMK--VKAD--FVVWGSLLGACRIHKNV 475 (644)
Q Consensus 403 -~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~ 475 (644)
....++.|..+|+.... |.+|.. ..|-.....=.+-|....|++++++.. +++. ...||..|.-....=-+
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 23468999999999866 666542 223333333345688888999999873 3332 34777777544333334
Q ss_pred hHHHHHHHHhhccCCCCchhH--HHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 476 DLGEIAAKKLFELEPNNCGYH--VLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..-..+|+++++.-|++-.-- .-.+.+-.+.|..+.|+.++..-.+
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556788999999877754333 3356667889999999998876543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-12 Score=85.47 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-12 Score=86.20 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 36 NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 36 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-08 Score=97.39 Aligned_cols=476 Identities=12% Similarity=0.016 Sum_probs=294.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
.-+..++.-+..+.++..|.-+-+++..- .|+..---+.+++.-.|+++.|..+...-.-. +.|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 34555666666677777777766665321 14444445777888888888888877665432 3466777777778888
Q ss_pred cCCcHHHHHHHHHH----HHhC---------CCCChhH----HHHHH-------HHHHhCCChHHHHHHHhhCCCCCCCe
Q 006457 86 LHDLHSGKQAHQQA----FIFG---------FHRDVFV----SSALI-------DMYSKCGELSDARKLFDEIPQRIRNI 141 (644)
Q Consensus 86 ~~~~~~a~~~~~~~----~~~g---------~~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~~~~~ 141 (644)
..++++|..++... .... +.+|..- -+.-. ..|......++|...|.+..- .|+
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~ 172 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADA 172 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cch
Confidence 88888888777622 1100 0011100 00001 112222334445444444333 333
Q ss_pred ecHHHHHHHHHhC-CChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCC
Q 006457 142 VSWTSMLTGYVQN-DNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFD 220 (644)
Q Consensus 142 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 220 (644)
..+..+...-... =-..+-..+|+.... ..-.+.+......+.........-+.....-....-.|..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~-----------a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDL-----------AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccH-----------HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 3333322111100 000111222221100 0001111111222211110000000000000000012334
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH
Q 006457 221 SEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL 297 (644)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 297 (644)
.++.+...-.+-+...+++.+..++++.+.+. ....+..-|.++...|+..+-+.+=.+++ ...+-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV--~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV--DLYPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCCcchhhHH
Confidence 45666666777788899999999999998654 44566677889999999999888888887 23455678899999
Q ss_pred HHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHH
Q 006457 298 LAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 298 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 374 (644)
--|...|+.++|++.+....... +.-...|-.+.+.|+-.|.-|.|...+....+ + .-..+--+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999887644 22345678889999999999999887765432 1 11112223445777889999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-CCC----CChhHHHHHHHHHhhcCCHHHHHH
Q 006457 375 ALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF-NIE----PGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 375 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
|.+.|.+... +-| |+...+-+.-..-+.+.+.+|..+|+...... .+. ....+++.|..+|.+++.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999876 455 56666666655666889999999999875211 111 134568889999999999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 449 LIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 449 ~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+++. . .+.|..++.++.-.+...|+++.|...|.+++.+.|++..+-.+|..+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99986 2 334788999999999999999999999999999999997776666544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=95.52 Aligned_cols=286 Identities=9% Similarity=0.013 Sum_probs=187.3
Q ss_pred CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 006457 154 NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAY 233 (644)
Q Consensus 154 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 233 (644)
.|++..|.++..+-. ..+-. ....|.....+.-+.|+.+.+.+....+.+..-.++..+.-+.....
T Consensus 97 eG~~~qAEkl~~rna------------e~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 97 EGDFQQAEKLLRRNA------------EHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred cCcHHHHHHHHHHhh------------hcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 588888888887743 22222 23445566667777788888888887777654455566666667777
Q ss_pred HhcCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 234 ARGGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 234 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
...|+++.|..-.+++ ..+++........+|.+.|++.....++..|. +.++--|+..-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~---------------- 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAAR---------------- 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHH----------------
Confidence 7777777777666554 44567777777788888888888888888877 555443332110
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
+ ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+.
T Consensus 227 -l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 227 -L-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred -H-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 0 012333444433333444444445555552 3455556667777788888888888888887777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 006457 388 RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLL 466 (644)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 466 (644)
.|+. ..+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+.
T Consensus 295 D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 295 DPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred ChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 6662 223345666777766666666655444444 66777888888888888888888754 6677788888888
Q ss_pred HHHHhcCChhHHHHHHHHhhc
Q 006457 467 GACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.++.+.|+.++|.+..++.+.
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 888888888888877777664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-07 Score=90.11 Aligned_cols=408 Identities=15% Similarity=0.185 Sum_probs=255.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC------CCCCcccHHHHH
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLS------LTPTRSTFPCAI 80 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll 80 (644)
..|...+......+-++.+.+++.+...- ++..-+--|..++..+++++|-+.+....... .+.+...|..+-
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~-~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV-APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc-CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 56677777777888889999999988766 66668889999999999999999998876422 133444566666
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGF--HRD--VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
...++..+.-....+ +.+++.|+ -+| ...|++|.+.|.+.|.+++|..+|++.......+.-++.+..+|++-..
T Consensus 218 dlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH
Confidence 655555443332222 22333333 234 3589999999999999999999999876643345556666666665322
Q ss_pred hhHH----------------------HHHHHHhHhhhhccCCCCCCCCCccCC----------HhhHHHHHHHhhcCCCc
Q 006457 157 AREA----------------------LLLFKEFLLEESECGGASENSDNVFVD----------SVAIASVLSACSRVTVN 204 (644)
Q Consensus 157 ~~~A----------------------~~~~~~m~~~~~~~~~~~~~~~~~~p~----------~~t~~~ll~~~~~~~~~ 204 (644)
..-+ +.-|+.+.. ...+-.| ..++..-. -...|+.
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~-----------rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~ 363 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMN-----------RRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNA 363 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh-----------ccchHHHHHHHhcCCccHHHHHhhh--hhhcCCh
Confidence 1111 111111110 0000000 11111111 1123445
Q ss_pred hHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHHCCChh
Q 006457 205 GVTEGAHGFVIKRGFDSE------VGVGNTLIDAYARGGHVDVSRKVFDGMIEKD-------AVTWNSIIAIYAQNGLAA 271 (644)
Q Consensus 205 ~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 271 (644)
.+-...+..+++.- .|. ...|..+...|-..|+++.|..+|++...-+ ..+|-.....=.+..+++
T Consensus 364 ~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 364 AEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred HHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 55556666666542 221 2467889999999999999999999985432 235655566666778899
Q ss_pred HHHHHHHHhHHcCCCCCC-----------------hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 272 EALDVFDQMVKSTDVKCN-----------------AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 272 ~A~~~~~~m~~~~~~~p~-----------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
.|+++.+... ...-.|. ...|+..+..--..|-++..+.+++.++...+.....+.| ..-.
T Consensus 443 ~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmf 520 (835)
T KOG2047|consen 443 AALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMF 520 (835)
T ss_pred HHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHH
Confidence 9999888775 2211111 1224444455556688899999999999877544333333 2223
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hcc
Q 006457 335 YCKCGQVDLARKAFNQMKE----KNV-RSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYITFVSVLSAC--SHA 404 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~ 404 (644)
+-...-++++.+++++-.. |++ ..|+.-+.-+.+ ....+.|..+|++.++ |.+|...-+..|+.|- ...
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence 3455668999999987653 555 368877665544 2368999999999998 7888765444444332 345
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVD 435 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~ 435 (644)
|....|..+++++.. ++++. ...|+..|.
T Consensus 600 GLar~amsiyerat~--~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 600 GLARHAMSIYERATS--AVKEAQRLDMYNIYIK 630 (835)
T ss_pred hHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 888888888888744 44443 344555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-09 Score=95.94 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCH------hHHHHHHHHHHHCCChhHHH
Q 006457 202 TVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-KDA------VTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~ 274 (644)
.+.++|..+|-.|.+.. +.+..+.-+|.+.|.+.|.+|.|+++.+.+.+ ||. .+.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555421 22333444555556666666666665555532 221 12233444455555556666
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV----IVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
.+|..+. ..+ ..-......++..|-...++++|..+-+++.+.+-.+.. ..|.-|...+....+++.
T Consensus 128 ~~f~~L~-de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~------- 198 (389)
T COG2956 128 DIFNQLV-DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR------- 198 (389)
T ss_pred HHHHHHh-cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH-------
Confidence 5555554 211 112233444555555555555555555555554432221 122333333333444444
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 351 MKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
|..++.+..+.+ |+.+ .-..+.......|+++.|.+.++.+.+. +..--..+
T Consensus 199 ------------------------A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ev 251 (389)
T COG2956 199 ------------------------ARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEV 251 (389)
T ss_pred ------------------------HHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHH
Confidence 444444444421 2211 1112223344444444444444444331 22222334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH--hhc
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY--ANA 506 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~ 506 (644)
...|..+|...|+.++...++.++ ...++...-..+-..-....-.+.|...+.+-+...|+-...|-.+---. +.-
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 444444445555555544444433 22222222222222222222233444444444444454322222222111 234
Q ss_pred CCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEE
Q 006457 507 GRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFL 543 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 543 (644)
|++.+-.-+++.|....++..|.+.....+-..|.|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 5577777788888877777777665555554555553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-09 Score=107.22 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKM-----DL-EESV-IVGTSIIDMYCKCGQVDLARKAFNQMKE-------K- 354 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 354 (644)
..|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888889999999999888887764 21 1222 2334577788999999999988887753 1
Q ss_pred C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcC--
Q 006457 355 N---VRSWTAMIAGYGMHCRAREALDLFYKMIK-----AGVR-PNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFN-- 422 (644)
Q Consensus 355 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 422 (644)
+ ..+++.|..+|.+.|++++|...+++..+ .|.. |... -++.+...|...+.+++|..+++...+-+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 35788888899999999998888877653 2222 2222 466677788999999999999987765433
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 423 IEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 423 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
..++ ..+++.|...|-..|++++|.++++++ +..+. ...++.|..+|.+.++.++|..+|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999876 11222 446778889999999999999998887653
Q ss_pred ----C---CCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 489 ----E---PNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 489 ----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
. |+...+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4455678899999999999999999998876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-08 Score=95.37 Aligned_cols=413 Identities=13% Similarity=0.019 Sum_probs=262.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPT-RSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD-VFVSSALIDMY 118 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 118 (644)
+-...+-|.++|++++|++.|.+... ..|| +..|...-.+|...|+++...+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44556678899999999999999988 5688 666777777788899998888777766654 454 34555566777
Q ss_pred HhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 119 SKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
-..|++++|+.= +|-.++..++..+.-.--+.+++++.-....... -..+...+.|......+.+..+
T Consensus 194 E~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~-~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 194 EQLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK-LKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HhhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh-hcccCCCCCCcHHHHHHHHhhc
Confidence 777887776521 1222333333322222222222222110000000 0011445666666555555544
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHH----HHhc-CCHHHHHHHHhcC-------CCCC---------HhHH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDA----YARG-GHVDVSRKVFDGM-------IEKD---------AVTW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~-g~~~~A~~~~~~~-------~~~~---------~~~~ 257 (644)
-..- ......+.......+..+ |... ..+..|...+.+- ...+ ..+.
T Consensus 262 ~~~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 262 HADP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred cccc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 2210 000001111111111111 1111 1233333333221 1111 1222
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
.....-+.-.|+.-.|.+.|+... ...-.++ ..|-.+..+|....+.++....|....+.+ +.+..+|..-..++.-
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I-~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAI-KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFL 406 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHH-hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHH
Confidence 222333455788889999999887 3322222 227777788899999999999999998876 4566777777888888
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.+++++|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 89999999999987753 5667777777778888999999999999876 5666778888889999999999999999
Q ss_pred HHHhhhcCCCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 415 NTMGHEFNIEPG---------VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 415 ~~~~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
+..+. +.|+ +.+..+++..-. .+++..|.+++++. .+.| -...+.+|...-.+.|+.++|+++|+
T Consensus 486 D~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 486 DKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 98853 3443 223333333333 38999999999987 4555 35588899999999999999999999
Q ss_pred HhhccC
Q 006457 484 KLFELE 489 (644)
Q Consensus 484 ~~~~~~ 489 (644)
+...+-
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-08 Score=101.70 Aligned_cols=448 Identities=12% Similarity=0.042 Sum_probs=219.3
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA 79 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 79 (644)
.||-.+|.+++.-|+..|+.+.|- +|.-|.-+ | +...++.++.+..+.++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 366799999999999999999998 77666432 3 3445777777766666655544 5666777777
Q ss_pred HHHHhccCCcHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 006457 80 IKSCSALHDLHS---GKQAHQQAF----IFGF-----------------HRDVFVSSALIDMYSKCGELSDARKLFDEIP 135 (644)
Q Consensus 80 l~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (644)
+.+|...||+.. .++.+..+. ..|+ -||.. ..+......|-++.+.+++..++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 777777776543 222121111 1121 11111 12222223344444444443333
Q ss_pred CC--------------------------------CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCC
Q 006457 136 QR--------------------------------IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDN 183 (644)
Q Consensus 136 ~~--------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 183 (644)
.. .++..+|...+..-..+|+.+.|..++.+|. ..|
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk------------e~g 234 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK------------EKG 234 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH------------HcC
Confidence 22 2555566666666666666666666666666 666
Q ss_pred ccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH
Q 006457 184 VFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAI 263 (644)
Q Consensus 184 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 263 (644)
++.+..-|..++-+ .++......+..-|...|+.|+..|+...+-.+.++|....+....+.-.--....+..+..+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 66666655555544 555566666666666666666666666555555544432221111100000001111122111
Q ss_pred HHHCCChhH-----HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC--C-CCchhHHHHHHHHH
Q 006457 264 YAQNGLAAE-----ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--L-EESVIVGTSIIDMY 335 (644)
Q Consensus 264 ~~~~g~~~~-----A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~-~~~~~~~~~li~~~ 335 (644)
...+.+.+. ....+++.. -.|+.-....|..... ....|.-+...++-..+..-- . ..++..+..++.-|
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~f-Llg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLF-LLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHH-HhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 111111110 011111111 1121111111111111 111333333333333332110 0 01112222222222
Q ss_pred Hh----------------------cCCHHHHHHHHHhcCCCC-----------------hhh-----------HHHHHHH
Q 006457 336 CK----------------------CGQVDLARKAFNQMKEKN-----------------VRS-----------WTAMIAG 365 (644)
Q Consensus 336 ~~----------------------~g~~~~A~~~~~~~~~~~-----------------~~~-----------~~~li~~ 365 (644)
.+ .....+..+...... || ... -+.++..
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 11 111122222222111 11 111 2333444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCCCCChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGH-EFNIEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~ 444 (644)
+++.-+..+++..-++....-+ | -.|..++.-|.....++.|..+.++... +..+..|...+..+.+.+.|.+.+.
T Consensus 469 l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4444444444433222222111 1 4577888888888999999988887732 1234456677889999999999999
Q ss_pred HHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 445 EAYDLIEGMK----VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 445 ~A~~~~~~~~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++..++.+++ .+|+ ..+.--+++..+..|+.+.-.+.++-+.
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 9999999884 3443 2344556666677777666655555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-08 Score=93.80 Aligned_cols=274 Identities=11% Similarity=0.074 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH
Q 006457 236 GGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i 312 (644)
.|++..|++...+-.+ .....|..-+.+--+.|+.+.+-..+.+.. +..-.++.....+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6788888888776533 234455555566677788888888888876 332244444555556667777888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV-----------RSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
...+.+.+ +-++.+.......|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88877766 45566777888888888888888888888876432 3677777766666666666667776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH----HHHhCCCCC
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD----LIEGMKVKA 457 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~p 457 (644)
.... .+-++..-.+++.-+.+.|+.++|.++.....+. +..|+.. .++ ...+-++.+.=++ -+...+..|
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556667777888889999999999998888664 6666622 122 2334444443333 334445444
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.+++++..
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 78899999999999999999999999999997 4889999999999999999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-08 Score=90.77 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=131.2
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCC-C--ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHH
Q 006457 192 ASVLSACSRVTVNGVTEGAHGFVIKRGFDS-E--VGVGNTLIDAYARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYA 265 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~ 265 (644)
.++-+.+.+.|..+.|.++|..+.++.--+ + ....-.|..-|...|-+|.|+.+|..+.+.+ ..+...|+..|-
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 345566888999999999999988753111 1 2344567778999999999999999997743 446777899999
Q ss_pred HCCChhHHHHHHHHhHHcCCCCCChh----hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006457 266 QNGLAAEALDVFDQMVKSTDVKCNAV----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 266 ~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 341 (644)
...+|++|++.-+++. ..+-.+..+ .|.-+........+++.|...+....+.+ +..+..--.+.+.+...|++
T Consensus 153 ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 153 ATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccch
Confidence 9999999999999887 444444332 34444455555677888888888887755 33344444556666666677
Q ss_pred HHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 342 DLARKAFNQMKEKNVR----SWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 342 ~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7666666666654432 3445555666666666666666665553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=107.50 Aligned_cols=260 Identities=12% Similarity=-0.015 Sum_probs=182.6
Q ss_pred CHhHHHHHHHHHHH-----CCChhHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHH---------ccccHHHHHHHHHHHH
Q 006457 253 DAVTWNSIIAIYAQ-----NGLAAEALDVFDQMVKSTDVKCNA-VTLSAVLLAIA---------HLGVLRLGKCIHDQVI 317 (644)
Q Consensus 253 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~ 317 (644)
+...|...+.+-.. .+..++|++.|++.. ...|+. ..+..+..++. ..+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45555555555322 133578999999987 345543 34444443332 2345789999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-T 393 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 393 (644)
+.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 875 45677788888889999999999999998764 4 4567888899999999999999999999985 45432 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACR 470 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~ 470 (644)
+..++..+...|++++|...++++... ..| +...+..+...|...|++++|.+.++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999988552 234 4556777888999999999999999887 3445433 4455556666
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788878877764322222223366678888888887776 7776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=92.84 Aligned_cols=372 Identities=14% Similarity=0.130 Sum_probs=174.0
Q ss_pred HHHHHhcCCchHHHHHHhhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccC
Q 006457 13 VSNVDKHSTNTNLTTLFNKYVDK-----NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH 87 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 87 (644)
+.-+....++..|+.+++--... .++..| +...+.+.|++++|+..+.-+.+.. .|+...+..|.-+..-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 44566778889998888653321 022223 3445678899999999998887754 455555555555555567
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHH
Q 006457 88 DLHSGKQAHQQAFIFGFHRDVFVS-SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (644)
.+.+|+++-... |+.... ..|...-.+.|+-++-..+-+.+... ..---+|.+...-.-.+.+|++++++
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777777665432 333333 33444445566655555554444431 11111222222223345677777777
Q ss_pred hHhhhhccCCCCCCCCCccCCHhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh--cCCH----
Q 006457 167 FLLEESECGGASENSDNVFVDSVAIASVLSA-CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR--GGHV---- 239 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~---- 239 (644)
.+. -.|+-...+.-+.. +.+..-++.+.+++.-..+. ++.++...|.......+ .|+.
T Consensus 177 vL~--------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 177 VLQ--------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHh--------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 651 12344444444443 34445555555555554443 22223333333322222 1221
Q ss_pred -----------------------------HHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh
Q 006457 240 -----------------------------DVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA 290 (644)
Q Consensus 240 -----------------------------~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 290 (644)
+.|++++-.+...-+.+--.|+--|.+.+++.+|..+.+++. ...|-.
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~E 318 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYE 318 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHH
Confidence 222222222211112222334445677777777777776664 344444
Q ss_pred hhHHHHHHHH-----HccccHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHH
Q 006457 291 VTLSAVLLAI-----AHLGVLRLGKCIHDQVIKMDLEESVIVG-TSIIDMYCKCGQVDLARKAFNQMKE----KNVRSWT 360 (644)
Q Consensus 291 ~t~~~ll~a~-----~~~~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 360 (644)
.....+..+- .....+.-|.+.|...-.++..-|+... .++...+.-..+++++...++.+.. .|...+
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~- 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL- 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence 4333333222 1112234444555444444433332221 1233333334445555544444432 122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS-VLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~ 416 (644)
.+.++++..|++.+|.++|-+.....++ |..+|.+ |.++|.+.+.++.|+.++-.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 2344555555555555555444322222 2333333 22344455555555444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-07 Score=92.23 Aligned_cols=454 Identities=14% Similarity=0.088 Sum_probs=272.6
Q ss_pred HHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh---ccCC-------------------cHHHHHHH----HHHHH
Q 006457 48 LARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS---ALHD-------------------LHSGKQAH----QQAFI 101 (644)
Q Consensus 48 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~-------------------~~~a~~~~----~~~~~ 101 (644)
+...++.++++.-+......+...+..++..+...+. ..++ ++++.... .++..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3445666777777766666555555555555443322 1222 22322221 12222
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCC
Q 006457 102 FGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASEN 180 (644)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 180 (644)
..+.-|..+|..|.-+..++|+++.+.+.|++.... ......|+.+-..|.-.|.-..|+.+++.-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~------------ 384 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL------------ 384 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc------------
Confidence 235568889999999999999999999999987643 3355679999999999999999999998854
Q ss_pred CCCccCC-HhhHHHHHHHhh-cCCCchHHHHHHHHHHHh--CC--CCCccHHHHHHHHHHhcC-----------CHHHHH
Q 006457 181 SDNVFVD-SVAIASVLSACS-RVTVNGVTEGAHGFVIKR--GF--DSEVGVGNTLIDAYARGG-----------HVDVSR 243 (644)
Q Consensus 181 ~~~~~p~-~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~ 243 (644)
...-.|+ ...+..+-+.|. +.+..+++...-..++.. +. ...+..+-.+.-+|...- ...++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 2222243 333333344444 345566666555555541 11 122334444444444321 124455
Q ss_pred HHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHH-h
Q 006457 244 KVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIK-M 319 (644)
Q Consensus 244 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~ 319 (644)
+.+++..+ .|+.+---+.--|+..++.+.|++..++.. ..+-.-+...+..+.-.+...+++..|..+.+.... .
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 55655522 133222223344667778888888888877 444445666666666667777888888888776654 2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------------CCh-hhHHHHHHHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------------------------------KNV-RSWTAMIAGYG 367 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~ 367 (644)
|.. -.....-++.-..-++.++|......+.. .+. .++..+..-..
T Consensus 544 ~~N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 GDN--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhh--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 211 11111111111223344443322221110 011 11221111111
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHh
Q 006457 368 MHCRAREALDLFYKMIKAGVR--PN------YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLG 438 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~--p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 438 (644)
.. .+.+..-.. |...-+. |+ ...|......+...+..++|...+.+.. ++.| ....|.-....+.
T Consensus 622 ~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 622 SQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLE 695 (799)
T ss_pred hh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHH
Confidence 00 000000000 1111122 22 1234455667888899999998888773 3444 5777887888899
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 439 RAGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDLGEI--AAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|.+++|.+.|... -+.|+. .+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988765 567754 478888899999999888888 9999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 006457 515 TRSLMKNR 522 (644)
Q Consensus 515 ~~~~m~~~ 522 (644)
.|+...+-
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99987643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-08 Score=93.92 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
...+..+...|...|++++|.+.+++.. .. .+.+...+..+...+...|+++.|...+....+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKAL-EH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4556677777777777777777777775 22 12234455555556666666666666666665543 223344445555
Q ss_pred HHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (644)
.|...|++++|.+.|++.... ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 555555555555555554321 12234444444455555555555555544421 112333444444444445555
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 409 EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+|..+++..... .+.+...+..++..+...|+.++|..+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555444444331 1222333333444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=102.11 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------CHh-HHHHHHHHHHHCCChhHHHHHHHHhHHc--CCCCCCh
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIEK----------DAV-TWNSIIAIYAQNGLAAEALDVFDQMVKS--TDVKCNA 290 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~p~~ 290 (644)
.+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ...-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 34555777777777777777777654221 111 1223444556666666666666655410 000011
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-hH
Q 006457 291 VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE----------KNVR-SW 359 (644)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~ 359 (644)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+. -+
T Consensus 279 ------------------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 279 ------------------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred ------------------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 111123444555566666666666555544321 1222 35
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CC--CC-C
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKA---GVRPNY----ITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NI--EP-G 426 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~p-~ 426 (644)
+.++..+...+++++|..++++..+. -+.++. -+++.+...+-+.|++++|.++|++++... +- .+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 55666777778888888887765531 122332 478888888888999999988888876432 11 22 2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM--------KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
...++.|...|.+.+++++|.++|.+. +..|+. .+|..|...|...|+++.|+++.+++..
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456777888888888888888888765 234444 4889999999999999999999888864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-08 Score=106.70 Aligned_cols=212 Identities=13% Similarity=-0.007 Sum_probs=163.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCC
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK---------CGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 371 (644)
+++++|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ | +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45789999999998764 3344556556555442 3458899999998775 3 56788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+++|+..|++..+.+ +.+...+..+..++...|++++|...++.+.+ +.|+. ..+..++..+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999853 33456778888899999999999999999954 45653 23334455577789999999999
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 451 EGMK--VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 451 ~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.- ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8762 2354 4456677788889999999999999998888988888888888888888 5888888877653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-06 Score=83.06 Aligned_cols=435 Identities=11% Similarity=0.146 Sum_probs=257.5
Q ss_pred HHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--H
Q 006457 44 VIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA--LIDMY--S 119 (644)
Q Consensus 44 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~ 119 (644)
=++-+.++|++++|.....++...+ +-|...+..=+-+....+.+++|..+.+ ..+. ..+++. +=.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHH
Confidence 3455678899999999999999865 3344556666667778888888874433 2221 112222 23334 4
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~ 198 (644)
+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+. ..+..- |..--..++.+.
T Consensus 91 rlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~------------kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLA------------KNNSDDQDEERRANLLAVA 156 (652)
T ss_pred HcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHH------------hcCCchHHHHHHHHHHHHH
Confidence 77999999999985544 454466666678889999999999999986 333222 222222233222
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHH---HHHHHHHhcCCHHHHHHHHhcC--------CCCCH-----h-----HH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGN---TLIDAYARGGHVDVSRKVFDGM--------IEKDA-----V-----TW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~ 257 (644)
... .+. .+......| ..+|. .....+...|++.+|+++++.. .+.|. . .-
T Consensus 157 a~l----~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 157 AAL----QVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred Hhh----hHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 111 010 121222222 22333 3345677899999999999877 22211 1 12
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH---HHHHccccHHH--------------HHHHHHHHHHhC
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL---LAIAHLGVLRL--------------GKCIHDQVIKMD 320 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll---~a~~~~~~~~~--------------a~~i~~~~~~~~ 320 (644)
-.|.-.+...|+..+|.++|.... .. ..+|........ .+...-.++-. +......+.. .
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i-~~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~ 304 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDII-KR-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-K 304 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH-Hh-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 234556778999999999999987 33 345543222221 22221111111 1111111111 0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN-VRSWTAMIAGYGM--HCRAREALDLFYKMIKAGVRPNY--ITFV 395 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 395 (644)
-......-+.++.+|. +..+.+.++-...+..- ...+.+++....+ .....+|.+++...-+. .|+. ....
T Consensus 305 qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L 380 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHH
Confidence 0112223345555553 45667777777766432 3344444443322 22467788888777654 3433 3444
Q ss_pred HHHHHHHccCCHHHHHHHHH--------HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-
Q 006457 396 SVLSACSHAGLVQEGWHWLN--------TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--------KVKAD- 458 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~- 458 (644)
..+.-....|+++.|.+++. .+ .+.+. .+.+..+++.+|.+.++-+-|.+++.+. ...+.
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~-~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSI-LEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhh-hhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 55556678999999999998 44 22233 3455667888888888876666666544 22222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
..+|.-+...-.++|+.++|...++++++.+|++......+..+|+.. +.+.|..+-+.+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 223444444556889999999999999999999999999999998876 456666654443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-06 Score=79.80 Aligned_cols=191 Identities=13% Similarity=0.059 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCR-------AREALDLFYKMIKAGVRPNYI-TFVSVLSAC 401 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 401 (644)
.|+--|.+.+++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.+ ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 355568899999999999888764443333222222333332 333444444433333332222 122334444
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHH-HHHHhcCChhHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLL-GACRIHKNVDLG 478 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll-~~~~~~g~~~~a 478 (644)
.-.-++++.+-+++.+.. +=...|...+| +..++...|++.+|+++|-++. .-.|..+|.+++ .+|.+.+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 455678888888888843 44444555554 7889999999999999998773 113677887777 555788888888
Q ss_pred HHHHHHhhccCCCC-chhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 479 EIAAKKLFELEPNN-CGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 479 ~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
..++-+.- .|.+ .+....+++-|.+++.+--|.+.|+.+.....
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 77754432 2332 34455678889999999999999999886554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-09 Score=94.77 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=174.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
+.|.++|.+.|.+.+|.+.|+... . -.|-..||..+-.+|.+..++..|..++.+-++. ++.++....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL-~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL-T--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh-h--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 678889999999999999888876 2 3556667888888888888888888888887764 24555555566777778
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.++.++|.++++...+ .|+.+.-++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+.+|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888888765 25556666667788888889999999998888854 6677888888888888888887777
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
++.... .-+.++| ..+|-.+.......||+..|.+.|+.++.-+|++..
T Consensus 382 ~RAlst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 766331 1112222 234555555556678888888888888888888888
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.++.|+-.-.+.|++++|+.++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 89999888888999999999888877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-08 Score=96.83 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 403 (644)
+..+...|...|+.++|...|++..+ .+...|+.+...|...|++++|++.|++..+. .|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444455555555555555555432 23445555555666666666666666665552 332 3445555555555
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
.|++++|.+.|+...+ ..|+..........+...+++++|.+.|++. . ..|+ .|.. .......|+...+ ..
T Consensus 145 ~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-HH
Confidence 5666666666655533 2333221111112233445566666665432 1 1222 2221 1111223333322 12
Q ss_pred HHHhh-------ccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 482 AKKLF-------ELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 482 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+. ++.|+.+..|..++.+|...|++++|...+++..+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22222 233444556666666666666666666666666543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-06 Score=91.21 Aligned_cols=482 Identities=11% Similarity=0.135 Sum_probs=270.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHH-----HHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 9 VSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVI-----ADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
+..+.+.|.+.|-...|++.+..+..---++..+.+| -.|.-.-.++++++.+..|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6678889999999999999888775310111222221 23334446889999999999888877776665555555
Q ss_pred hccCCcHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCC----------------
Q 006457 84 SALHDLHSGKQAHQQAFIF-----------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQ---------------- 136 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------- 136 (644)
...-..+...++|+..... ++.-|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5443344445555544321 3456677777788889999999888887654211
Q ss_pred -CCC-----CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHH-------------HHHHH
Q 006457 137 -RIR-----NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIA-------------SVLSA 197 (644)
Q Consensus 137 -~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~-------------~ll~~ 197 (644)
..| |..-+-.=+-.|.-.++..+-+++|-+-... ...+........+.-+....- -+..-
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp-s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP-SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC-cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 011 1111111111222223333333333221100 000000000001111111111 12223
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHH-------------------------------------
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVD------------------------------------- 240 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------- 240 (644)
+.+.+.+......++..+..| ..|+.++|+|...|...++-.
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 344455555556666666677 457788888877665433211
Q ss_pred ---------------HHHHHHhcC-----------------------------CCCCHhHHHHHHHHHHHCCChhHHHHH
Q 006457 241 ---------------VSRKVFDGM-----------------------------IEKDAVTWNSIIAIYAQNGLAAEALDV 276 (644)
Q Consensus 241 ---------------~A~~~~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (644)
.|+-+.+++ ...|+..-+.-+.++..++-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 111111111 001333344455666666777777777
Q ss_pred HHHhHHcCC-CCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC-----------------------CCCchhHHHHHH
Q 006457 277 FDQMVKSTD-VKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-----------------------LEESVIVGTSII 332 (644)
Q Consensus 277 ~~~m~~~~~-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----------------------~~~~~~~~~~li 332 (644)
++++. ..+ .-........++-.-+-..+.....++.+++-... +..+....+.||
T Consensus 1007 LEKIv-L~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1007 LEKIV-LDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI 1085 (1666)
T ss_pred HHHHh-cCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 77665 221 11111111111111111112222222222221111 111222222222
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
+ .-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-..
T Consensus 1086 e---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 2 12334444444333332 356999999999999999999887543 367789999999999999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
++....++ .-+|.++ +.||-+|++.+++.+-++++. -||..-......-|...|.++.|.-+|..
T Consensus 1155 yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------- 1219 (1666)
T KOG0985|consen 1155 YLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-------- 1219 (1666)
T ss_pred HHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------
Confidence 99888553 5566655 578999999999999888774 36777788889999999999999888874
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888888888887654443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=92.84 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF-VSVLSACSHA 404 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~ 404 (644)
-+-+...|.+.|.+.+|.+.|+.-. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. -|-.+|| ....+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567788899999999999888765 367778888999999999999999999988874 5655554 4566677788
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM---KVKADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
++.++|.++++...+ -...+++...++...|.-.++.+-|+.+++++ +.. ++..|..+.-+|.-.++++.++..
T Consensus 304 ~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999865 23346788888888999999999999999865 554 777888899999999999999999
Q ss_pred HHHhhccC--CC-CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 482 AKKLFELE--PN-NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 482 ~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|++++..- |+ ....|..|+.+....|++.-|.+.|+.....+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99998753 33 34678889999999999999999998876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-07 Score=90.31 Aligned_cols=226 Identities=13% Similarity=0.018 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHhHHcCCCCCC--hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN--AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
..+.++..+.++.......|+ ...|......+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555522222222 2334455555666677777777776666654 3456777888888888888888888
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC
Q 006457 347 AFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI 423 (644)
Q Consensus 347 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 423 (644)
.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8887754 3 4567888888888889999999999988874 45433222222233456788999999876543 23
Q ss_pred CCChhHHHHHHHHHhhcCCHHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC-Cch
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEA--YDLIEGM-KV----KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN-NCG 494 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~ 494 (644)
.|+...+ .++.. ..|++.++ .+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|. ...
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3433222 23333 34444333 3222221 11 11 2357889999999999999999999999999974 444
Q ss_pred hHHHHHHH
Q 006457 495 YHVLLSNI 502 (644)
Q Consensus 495 ~~~~l~~~ 502 (644)
+...++..
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-05 Score=84.45 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=129.9
Q ss_pred HHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCc
Q 006457 10 SSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDL 89 (644)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 89 (644)
+.++..|+..|+++++.-...+....|| |-.+|+...+ -.++.+.++...|.+.. |...-+..+...+...+..
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhh
Confidence 4456667777777777666666655555 5667777766 46788888888777633 2223333333333333333
Q ss_pred HHHHHHHHHHHH-------------------hCC----------CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC
Q 006457 90 HSGKQAHQQAFI-------------------FGF----------HRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN 140 (644)
Q Consensus 90 ~~a~~~~~~~~~-------------------~g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 140 (644)
..+...+-.+++ .++ .-+.+-+..+...|.+.|-...|++.+..+....+
T Consensus 559 Qq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR- 637 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKR- 637 (1666)
T ss_pred hhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHH-
Confidence 332222222221 110 01112244566778888888888888877654311
Q ss_pred eecHHH-----HHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 006457 141 IVSWTS-----MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215 (644)
Q Consensus 141 ~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 215 (644)
++..+. .+-.|.-.-.++++++.++.|. ..+++.|..+...+..-|...-..+...++|+...
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml------------~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk 705 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAML------------SANIRQNLQIVVQVATKYHEQLGAQALIELFESFK 705 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence 111111 1234555556788999999998 77777777766655554443332333333333322
Q ss_pred H-----------hCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 216 K-----------RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 216 ~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
. -.+..|+.+.-..|.+.++.|++.+.+++-++-
T Consensus 706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 1 135667788888999999999999999888764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-06 Score=85.34 Aligned_cols=431 Identities=13% Similarity=0.079 Sum_probs=266.1
Q ss_pred cCCCchHHHHH----HHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 006457 50 RGGDSVEALRA----FSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELS 125 (644)
Q Consensus 50 ~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 125 (644)
-..+.+++.-. +.++....+.-|...|..+.-++...|+++.+.+.|+.....- -.....|+.+-..|..+|.-.
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccch
Confidence 34455555433 3333344466678888888888889999999999999887643 335678888888999999999
Q ss_pred HHHHHHhhCCCCC--CCeecHHHHH-HHHHh-CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh--
Q 006457 126 DARKLFDEIPQRI--RNIVSWTSML-TGYVQ-NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS-- 199 (644)
Q Consensus 126 ~A~~~~~~~~~~~--~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~-- 199 (644)
.|..+++.-.... |+..+--.++ ..|.+ -+..+++++.-.+....... ....+.|-..-+..+--...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhh
Confidence 9999998765542 4333333333 33333 36677777776666521100 02233343333322222111
Q ss_pred cCC-------CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCHhHHHHHHHHHHHCC
Q 006457 200 RVT-------VNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEKDAVTWNSIIAIYAQNG 268 (644)
Q Consensus 200 ~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g 268 (644)
... ...++.+.++..++.+ +.|+.+.-.+.--|+..++++.|.+..++. ...+...|-.+.-.+...+
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 111 1334556666666655 334444444555678888999999888776 3348899999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH-------HH----------HHH----HhCC------
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI-------HD----------QVI----KMDL------ 321 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i-------~~----------~~~----~~~~------ 321 (644)
++.+|+.+.+......|. |......-+..-...++.+++... |+ +.. +.|.
T Consensus 528 r~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 999999999887644332 111111111111112222222221 11 111 1111
Q ss_pred -CCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006457 322 -EESVIVGTSIIDMYC---KCGQVDLARKAFNQMKEKNV------RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY 391 (644)
Q Consensus 322 -~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (644)
...+.++..+..... +.-..+.....+...+.|+. ..|......+.+.++.++|...+.+..+. .+-..
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~ 684 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSA 684 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhH
Confidence 111222222222111 11111111122222222331 34666777888889999998888877663 23344
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYD--LIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll 466 (644)
..|......+...|..++|.+.|... .-+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|-.+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45555556777889999999999887 457775 7788999999999998777777 77766 5555 677999999
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
..+.+.|+.+.|.+.|.-+.++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999877664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-06 Score=86.30 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
....+..|..+++.+..... ...-|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+++.|.++-.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHH
Confidence 33445555555555444321 12234445555666666666666655432 234445556666666666555443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--H
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKAD--F 459 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~ 459 (644)
.. |.......|.+-..-.-..|++.+|.+++-.+ | .|+. -|.+|-+.|..++.+++..+-. |+ .
T Consensus 817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~ 882 (1636)
T KOG3616|consen 817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLH 882 (1636)
T ss_pred hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhh
Confidence 32 22222333433334444555555555554433 1 2332 2455556666666555555431 22 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
.|...+..-+...|++..|+.-|-++ .-+-.-.++|-..+.|++|.++-+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 24444555555666666666555443 224445567777777777766544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-05 Score=80.27 Aligned_cols=422 Identities=12% Similarity=0.083 Sum_probs=215.6
Q ss_pred chhHHHHHHHHHhc---CCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 6 SSSVSSVVSNVDKH---STNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 6 ~~~~~~l~~~~~~~---~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
...|-.++..|-.. ..+..+..++.+.|+.|++.+- ..-.+...|+.++|......-.+..++ +.+.|+.+--.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm--kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAM--KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh--ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 34444455544332 2445555566655665554332 222345568888888888777664433 56777777766
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
.....++++|...+..+++.+ +.+...+..|.-.=++.|+++.....-....+. +.....|..+..++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777788999999999888865 445667776666666677777766655555443 235677888888888899999999
Q ss_pred HHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH------hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 006457 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA------CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR 235 (644)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 235 (644)
.++++..+. ..-.|+...+...... ....|.++.+.+.+...... +......-..-.+.+.+
T Consensus 164 ~il~ef~~t-----------~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 164 EILEEFEKT-----------QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHh-----------hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 998888631 1134565555443322 23445555555544332211 11122233344556777
Q ss_pred cCCHHHHHHHHhcCCC--CCHhHHHHH-HHHHHHCCChhHHH-HHHHHhHHcCCCCCChh-hHHHHHHHHHccccHHHHH
Q 006457 236 GGHVDVSRKVFDGMIE--KDAVTWNSI-IAIYAQNGLAAEAL-DVFDQMVKSTDVKCNAV-TLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~ 310 (644)
.+++++|..++..+.. ||...|+.. ..++.+-.+.-+++ .+|.... .. .|... ....=++......-.+...
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls--~~-y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS--EK-YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--hc-CcccccchhccHHHhCcchhHHHHH
Confidence 7788888888777744 344444433 33333333333444 4554443 11 12111 1111111111222234444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCC--------------CChhhHH--HHHHHHHhcC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDL----ARKAFNQMKE--------------KNVRSWT--AMIAGYGMHC 370 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--------------~~~~~~~--~li~~~~~~g 370 (644)
.++....+.|+++ ++..+...|-.....+- +..+...+.. |....|+ -++..|-..|
T Consensus 309 kyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 5555556666544 33344444433222111 1111111110 1112222 2344455555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+++.|+.+++...+. .|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-.--+.-..++.+.++|.++
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 555555555555542 34333 233333445555555555555555522 1123333222333444455555555555
Q ss_pred HHhC
Q 006457 450 IEGM 453 (644)
Q Consensus 450 ~~~~ 453 (644)
....
T Consensus 462 ~skF 465 (700)
T KOG1156|consen 462 LSKF 465 (700)
T ss_pred HHHh
Confidence 4433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-05 Score=81.42 Aligned_cols=408 Identities=10% Similarity=0.040 Sum_probs=218.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHH
Q 006457 87 HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFK 165 (644)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 165 (644)
+++..+....+.+++ +.+-...+....--.+...|+.++|......-... ..+.+.|..+.-.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 444455555555544 22222222222222233446666666655544332 3456667776666666677777777777
Q ss_pred HhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 006457 166 EFLLEESECGGASENSDNVFVD-SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRK 244 (644)
Q Consensus 166 ~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (644)
... .+.|| ...+.-+--.-++.++++..........+.. +.....|..+.-++.-.|+...|..
T Consensus 100 nAl--------------~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 100 NAL--------------KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHH--------------hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 23333 2223222222334445444444444433321 2233456666666777777777777
Q ss_pred HHhcCCC-----CCHhHHHHH------HHHHHHCCChhHHHHHHHHhHHcCCCCCChhh-HHHHHHHHHccccHHHHHHH
Q 006457 245 VFDGMIE-----KDAVTWNSI------IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT-LSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 245 ~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i 312 (644)
+.+.... ++...+.-. ......+|..++|++.+..-. ..+ .|... --+-...+.+.+++++|..+
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE--KQI-VDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--hHH-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 7665421 233222221 234456777777777665553 111 12222 22333445677788888888
Q ss_pred HHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHH-HHHHhcCCC-------ChhhHHHHHHHHHhcCC-HHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLAR-KAFNQMKEK-------NVRSWTAMIAGYGMHCR-AREALDLFYKM 382 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~-~~~~~~~~~-------~~~~~~~li~~~~~~g~-~~~A~~~~~~m 382 (644)
+..++..+ ||..- |-.+..++.+-.+.-++. .+|....+. --...+. ..... .+..-+++..+
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv-----l~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV-----LNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH-----hCcchhHHHHHHHHHHH
Confidence 87777754 44333 334444554333333333 555544321 0011111 11122 23344566777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHhhhcC----------CCCChhH--HHHHHHHHhhcCCHHHH
Q 006457 383 IKAGVRPNYITFVSVLSACSHAGLVQE----GWHWLNTMGHEFN----------IEPGVEH--YGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~~--~~~li~~~~~~g~~~~A 446 (644)
.+.|+++--..+.++.. .-...+- +..+...+ ...| -+|.... +-.++..+-+.|+++.|
T Consensus 315 l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred hhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhc-ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 78887664444333332 2111111 11222222 1011 1445444 44677888899999999
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 447 YDLIEGM-KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 447 ~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
...++.. ..-|..+ .|..-...+...|++++|...++++.+++-.|.....--++-..++.+.++|.++.....+.|.
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999876 4455544 4444557778889999999999999999866655555666777789999999999988876664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=83.79 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=139.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 435 (644)
+...|.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+... .+.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3455777899999999999999999985 45 45688888889999999999999999884 4566 4778888899
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 436 LLGRAGKLKEAYDLIEGMKVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
-++..|++++|...|++.-..| -..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999874333 245888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 006457 512 VERTRSLMKNRRL 524 (644)
Q Consensus 512 a~~~~~~m~~~~~ 524 (644)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-05 Score=83.09 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
++.-+...|...|++++|++.+++.. . ..|+ ...|..-...+-+.|++.+|...++...... .-|-.+-+-.+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI-~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI-E--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-h--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence 33555677888888888888888877 2 2344 4567777777888888888888888887765 3466666677778
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----------hhH--HHHHHHHHhcCCHHHHHHHHHHHHHc--CC---C---------
Q 006457 335 YCKCGQVDLARKAFNQMKEKNV----------RSW--TAMIAGYGMHCRAREALDLFYKMIKA--GV---R--------- 388 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~--------- 388 (644)
+.++|++++|.+++.....++. ..| .....+|.+.|++..|+.-|....+. .+ +
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~R 351 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLR 351 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 8888999998888887765542 123 33456788888888888776665432 01 1
Q ss_pred -CCHHHHHHHHHHHHccCC-------HHHHHHHHHHHhhhcCCCC-----------ChhHHHHHHHHH---hhcCCHHHH
Q 006457 389 -PNYITFVSVLSACSHAGL-------VQEGWHWLNTMGHEFNIEP-----------GVEHYGCMVDLL---GRAGKLKEA 446 (644)
Q Consensus 389 -p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A 446 (644)
.+..+|..++...-+... ...|.+++-.+........ +..--..+-.-. .+...-+++
T Consensus 352 K~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~ 431 (517)
T PF12569_consen 352 KMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEA 431 (517)
T ss_pred hccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHH
Confidence 222334444433222111 1234444444422100000 000000010000 111111111
Q ss_pred HHHHH-----------hC----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc
Q 006457 447 YDLIE-----------GM----K--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 447 ~~~~~-----------~~----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (644)
...-. +. + ..||+.- ..|+ ....-+++|.+.++.+.+..|++..+|.+--.+|.+.|++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~ 507 (517)
T PF12569_consen 432 EKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKY 507 (517)
T ss_pred HHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcH
Confidence 11110 00 1 1122211 1111 2334578899999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 006457 510 EDVERTRSL 518 (644)
Q Consensus 510 ~~a~~~~~~ 518 (644)
--|.+.+..
T Consensus 508 LLaLqaL~k 516 (517)
T PF12569_consen 508 LLALQALKK 516 (517)
T ss_pred HHHHHHHHh
Confidence 998887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-06 Score=85.59 Aligned_cols=355 Identities=15% Similarity=0.133 Sum_probs=183.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhH
Q 006457 112 SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAI 191 (644)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~ 191 (644)
-+.|..|.+.|.+..|.+....-.....|......+..++.+..-+++|-++|+++.. +
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------------------~ 677 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------------------F 677 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------------------H
Confidence 3567888888888887766433222124555566666666666667777777776541 1
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH-HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCCh
Q 006457 192 ASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV-GNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLA 270 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 270 (644)
...+..+.+-..+.+|.++-... ++..++. -..-..-+...|+++.|..-|-+.. ..-..|.+-....++
T Consensus 678 dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew 748 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEW 748 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhh
Confidence 12233333322333443333222 1111111 1222333444566666665553321 111234445566677
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
.+|+.+++.++ ... .-.--|..+...|++.|+++.|+++|.+. ..++-.|+||.+.|++++|.++-.+
T Consensus 749 ~kai~ildniq-dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 749 KKAISILDNIQ-DQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhHhHHHHhh-hhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 77777777765 222 23334566667777777777777776543 1344567777777777777777766
Q ss_pred cCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----------cC-----------CCCC--HHHHHHHHHHHHccC
Q 006457 351 MKEKN--VRSWTAMIAGYGMHCRAREALDLFYKMIK----------AG-----------VRPN--YITFVSVLSACSHAG 405 (644)
Q Consensus 351 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g-----------~~p~--~~t~~~ll~a~~~~g 405 (644)
...|. +.+|-+-..-+-.+|++.+|.++|-.... .| ..|+ ..|...+..-+...|
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhcc
Confidence 65542 33444444445555555555544422110 00 1122 123334444555556
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006457 406 LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (644)
++..|...|-+.. -|.+-+.+|-..+.|++|.++-+.-+- .|..-.-..+.+-...| +.|.+++.+.
T Consensus 897 ~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaksigg--daavkllnk~ 963 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGG--DAAVKLLNKH 963 (1636)
T ss_pred ChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCc--HHHHHHHHhh
Confidence 6666655554441 245556666667777777666554431 13222222333333333 3445554442
Q ss_pred ------hc------------------cCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 486 ------FE------------------LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 486 ------~~------------------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+. ....-+..+.-++.-+...|++++|.+-+-+..+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 11 0112245566666777788999998776655544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.7e-07 Score=91.74 Aligned_cols=255 Identities=11% Similarity=0.087 Sum_probs=150.7
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC----- 338 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~----- 338 (644)
+...|++++|++.+..-. ..+......+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 455566666666655442 2222223334444455556666666666666666654 23333334444443221
Q ss_pred CCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 339 GQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAR-EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 339 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
.+.+...++|+++.. |.......+.-.+.....+. .+..++..+...|+++ +|+.|-.-|......+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 134555556655543 21111111211122211222 3555666777777654 44444444555555555555555
Q ss_pred HHhhhc-------------CCCCChh--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 416 TMGHEF-------------NIEPGVE--HYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 416 ~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
...... .-.|+.. ++..+...|-+.|++++|++++++. ...|. +..|..-...+...|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 543221 1123333 3455677788999999999999865 55565 44677777888899999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.+.++.+.++++.|-....-.+..+.++|++++|.+++....+.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999998888888888888999999999999988876654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-08 Score=96.70 Aligned_cols=249 Identities=15% Similarity=0.157 Sum_probs=186.3
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 376 (644)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888765 56777888888888888888888888888765 35667777778899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 006457 377 DLFYKMIKAGVRPNYITFVSV--------LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
..++.=+... |-......- -..+.....+....++|-.+....+..+|.+++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9988876532 111000000 012223334456667777776766777899999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcC
Q 006457 449 LIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAK 526 (644)
Q Consensus 449 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 526 (644)
.|+.+ .++| |..+||-|...++...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-......-+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99976 5677 677999999999999999999999999999999999999999999999999999999887765322110
Q ss_pred CCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 527 TPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 527 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
. -..+..++ ...|++.|+..+..|.
T Consensus 532 -~--------------~~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 -R--------------NHNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred -c--------------ccccCCcc-hHHHHHHHHHHHHHcC
Confidence 0 00011222 6788888886555553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-06 Score=76.68 Aligned_cols=196 Identities=15% Similarity=0.078 Sum_probs=133.5
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC
Q 006457 295 AVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 295 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 371 (644)
.+.-.|...|+...|+.-++..+++. +.+..++..+...|.+.|+.+.|.+.|++... .+-...|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 34444555566666666666666554 34455666777777777777777777776543 355566777777778888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+ +.|+ ......+.....+.|++-.|..+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 888888888877643222 245777777777788888888888887744 3443 55666777788888888888888
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 450 IEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 450 ~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
++.. ...++..+.-..|..-...||.+.+.+.-.++.+..|.+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7765 23356666666666677788888888877777777787644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-05 Score=75.18 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH-HHHHc-ccc
Q 006457 231 DAYARGGHVDVSRKVFDGMI--EK-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL-LAIAH-LGV 305 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~a~~~-~~~ 305 (644)
..+...|+.++|.-.|+... .| +..+|..|+.+|...|.+.+|.-+-+...+ -++.+..+...+. ..|.- ...
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchh
Confidence 34445556666655555442 22 455666666666666666665554443321 1122223332221 11211 112
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-++|+.+++...+.. +.-....+.+...+...|..+++..++++.. .+|....+.|.+.+...+.+.+|++.|....
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555555444432 1223334445555555555555555555443 2455555555555555555555555555554
Q ss_pred H
Q 006457 384 K 384 (644)
Q Consensus 384 ~ 384 (644)
.
T Consensus 499 r 499 (564)
T KOG1174|consen 499 R 499 (564)
T ss_pred h
Confidence 4
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00016 Score=72.88 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--cc
Q 006457 11 SVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS--AL 86 (644)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~ 86 (644)
+=++.+...+++++|.+..+++... | +...+.+=+-++.+.+++++|+.+.+.-.. +..+.+-+ +=++|+ +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 3456666777888888777776432 2 444555656666677777777755443211 00000000 122222 34
Q ss_pred CCcHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHhhC-------------------------------
Q 006457 87 HDLHSGKQAHQQAFIFGFHRDV-FVSSALIDMYSKCGELSDARKLFDEI------------------------------- 134 (644)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~------------------------------- 134 (644)
+..++|...+. |..++. .+...-...+-+.|++++|..+++.+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44444444443 222211 12222223333444444444444433
Q ss_pred CCCCCCeecHHHHH---HHHHhCCChhHHHHHHHHhHhhhhccCCCCCC-CCCccCCHhhHHH-HHHHhhcCCCchHHHH
Q 006457 135 PQRIRNIVSWTSML---TGYVQNDNAREALLLFKEFLLEESECGGASEN-SDNVFVDSVAIAS-VLSACSRVTVNGVTEG 209 (644)
Q Consensus 135 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 209 (644)
+. ....+|..+- -.+...|++.+|+++++...+.+.+....... ..++.-+..+... +.-.+-..|+.+++.+
T Consensus 168 ~~--v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 168 PE--VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred cC--CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 33 1233444433 35667899999999999885433332111111 2233333233222 2223556788899999
Q ss_pred HHHHHHHhC
Q 006457 210 AHGFVIKRG 218 (644)
Q Consensus 210 ~~~~~~~~g 218 (644)
++..+++..
T Consensus 246 iy~~~i~~~ 254 (652)
T KOG2376|consen 246 IYVDIIKRN 254 (652)
T ss_pred HHHHHHHhc
Confidence 988888876
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-07 Score=86.31 Aligned_cols=146 Identities=17% Similarity=0.075 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH---HHHHHHHHhhcCCH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH---YGCMVDLLGRAGKL 443 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~ 443 (644)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 3345555555444321 1233333344455555555555555555521 2222211 11222222222356
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc-hHHHHHHHHHh
Q 006457 444 KEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW-EDVERTRSLMK 520 (644)
Q Consensus 444 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 520 (644)
.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77777777662 3456667777777777788888888888888888888887777777777777777 55666777766
Q ss_pred h
Q 006457 521 N 521 (644)
Q Consensus 521 ~ 521 (644)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-05 Score=78.22 Aligned_cols=399 Identities=10% Similarity=-0.005 Sum_probs=194.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 159 (644)
++....|+++.|...|-..+... +++...|+.-..+|++.|++++|.+=-.+-.+..| -...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556788888888888888776 44778888888888888888888765555444334 35678888888888888888
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHH-----HH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLID-----AY 233 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-----~~ 233 (644)
|+.-|.+=+ ...| |...++.+..+.. .+.+. + ....++..+..+.. .+
T Consensus 89 A~~ay~~GL--------------~~d~~n~~L~~gl~~a~~----~~~~~-----~---~~~~~p~~~~~l~~~p~t~~~ 142 (539)
T KOG0548|consen 89 AILAYSEGL--------------EKDPSNKQLKTGLAQAYL----EDYAA-----D---QLFTKPYFHEKLANLPLTNYS 142 (539)
T ss_pred HHHHHHHHh--------------hcCCchHHHHHhHHHhhh----HHHHh-----h---hhccCcHHHHHhhcChhhhhh
Confidence 888887733 3344 3445555555541 11000 0 01112222222211 11
Q ss_pred HhcCCHHHHHHHHhcCCCCCHhH---HHHHHHHHHHCCChh-HHHHHHHHhHHcCCCCC---------------------
Q 006457 234 ARGGHVDVSRKVFDGMIEKDAVT---WNSIIAIYAQNGLAA-EALDVFDQMVKSTDVKC--------------------- 288 (644)
Q Consensus 234 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~p--------------------- 288 (644)
.....+-.-++.+..-+.. +-. ...++.+.......+ .....-..+....+..|
T Consensus 143 ~~~~~~~~~l~~~~~~p~~-l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k 221 (539)
T KOG0548|consen 143 LSDPAYVKILEIIQKNPTS-LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVK 221 (539)
T ss_pred hccHHHHHHHHHhhcCcHh-hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHH
Confidence 1111122222222111100 000 000111110000000 00000000000001111
Q ss_pred -ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------h
Q 006457 289 -NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV----------R 357 (644)
Q Consensus 289 -~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~ 357 (644)
-..-...+.++.-+..+++.+.+-+....... .++.-++....+|...|.+......-+...+.+- .
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 01123445566666677788888887777765 5666677777888888887777666555443211 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-HHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE-HYGCMVDL 436 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~ 436 (644)
+...+..+|.+.++++.|+..|.+....-..||..+=. ...+++....+.. .-+.|... -...=...
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~l---------k~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKL---------KEAEKALKEAERK---AYINPEKAEEEREKGNE 367 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHH---------HHHHHHHHHHHHH---HhhChhHHHHHHHHHHH
Confidence 22234456777788888999888876654454433211 1122222222211 11222210 00111333
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
+.+.|++..|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+.+..|.-=+.++....+|++|.+
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555443 1222 334444444444555555555555555555555555555554555555555555555
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+.+-.+
T Consensus 448 ay~eale 454 (539)
T KOG0548|consen 448 AYQEALE 454 (539)
T ss_pred HHHHHHh
Confidence 5544433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-05 Score=79.16 Aligned_cols=257 Identities=11% Similarity=-0.064 Sum_probs=137.8
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEES-VIVGTSIIDMYC 336 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~ 336 (644)
..+...|++++|.+.+++.. .. .+.|...+.. ...+.. .+....+.+.+.. ..+..|+ ......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l-~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLL-DD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 34556677777777777765 21 1222222221 112222 2333333333332 1111222 233344555677
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHH
Q 006457 337 KCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPNY--ITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 410 (644)
..|++++|...+++..+ .+...+..+...|...|++++|..++++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777653 2445666677777777888888887777765321 1222 2344566667777888888
Q ss_pred HHHHHHHhhhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHH
Q 006457 411 WHWLNTMGHEFNIEPGVEHY-G--CMVDLLGRAGKLKEAYDL---IEGM-KVKA---DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
..+++.........+..... + .++.-+...|..+.+.+. .... +..| ..........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 88887763211111111111 1 223333334432222222 1111 1101 11222345566677888888888
Q ss_pred HHHHhhccC---------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 481 AAKKLFELE---------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 481 ~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.++.+.... +.......+.+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887775522 1134556677788899999999999998877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00016 Score=83.34 Aligned_cols=361 Identities=9% Similarity=-0.006 Sum_probs=182.3
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCCCeec--HHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHH
Q 006457 115 IDMYSKCGELSDARKLFDEIPQRIRNIVS--WTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIA 192 (644)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~ 192 (644)
...|...|++.+|......... ..... ...........|+++.+...+..+. ......+.....
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp------------~~~~~~~~~l~~ 413 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGD--AQLLRDILLQHGWSLFNQGELSLLEECLNALP------------WEVLLENPRLVL 413 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC------------HHHHhcCcchHH
Confidence 3345556666666665555443 21110 1111223444566666666665542 111111111222
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCC------CC--ccHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCH----hH
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFD------SE--VGVGNTLIDAYARGGHVDVSRKVFDGMIE----KDA----VT 256 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~ 256 (644)
.....+...++++.+...+..+...--. +. ......+...+...|++++|...+++... .+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 2233344567777777777665442111 11 11122233455677788888777766422 121 23
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHc---CCC-CCChhhHHHHHHHHHccccHHHHHHHHHHHHHh----CCCC---ch
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKS---TDV-KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLEE---SV 325 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~---~~ 325 (644)
++.+...+...|++++|...+.+.... .+- .+...++..+...+...|+++.|...+++.... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455556667788888887777766421 110 011123344455566778888887777665542 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH--
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE------K--NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNYITF-- 394 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-- 394 (644)
..+..+...+...|++++|...+.+... + ....+..+...+...|++++|.+.+.+.....-. .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2334455556666788777777665432 1 1223444555666777777777777776432100 000101
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HH
Q 006457 395 ---VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKAD-FV 460 (644)
Q Consensus 395 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 460 (644)
...+..+...|+.+.|..++...... ..... ...+..+..++...|+.++|...+++. +..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 01123334467777777776654221 10000 111334555667777777777776654 11111 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+...+..++...|+.++|...+.+++++..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 444455666777777777777777777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-07 Score=85.03 Aligned_cols=249 Identities=10% Similarity=-0.008 Sum_probs=158.8
Q ss_pred HHhcCCHHHHHHHHhc--CCC-CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 233 YARGGHVDVSRKVFDG--MIE-KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
+.-.|++..++.-.+. ... .+.....-+.++|...|+++.++ .++. . +-.|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~-~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK-K-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS--T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc-c-CCChhHHHHHHHHHHHhCccchHHH
Confidence 4456777777754441 111 12334555677888888877544 4443 2 2266665555555444443333444
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006457 310 KCIHDQVIKMDLE-ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR 388 (644)
Q Consensus 310 ~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (644)
..-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333333222222 23333344445677789999999988775 45666667888999999999999999999863 3
Q ss_pred CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 006457 389 PNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVW 462 (644)
Q Consensus 389 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 462 (644)
.| .+...+..++.. ...+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| |+.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 444455555433 3468999999999855 45678889999999999999999999998875 3344 45567
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHhhccCCCCc
Q 006457 463 GSLLGACRIHKNV-DLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 463 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 493 (644)
..++......|+. +.+.+...++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7777777777777 678889999988899864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-05 Score=84.43 Aligned_cols=507 Identities=11% Similarity=0.012 Sum_probs=263.5
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC-CCCCcccHHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--NNVFSWNSVIADLARGGDSVEALRAFSSMRKLS-LTPTRSTFPCAIKS 82 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~ 82 (644)
...|+.|.+.|....+...|.+.|+..-+- .+..++......|++..+++.|..+.-..-+.. ...-...|..+--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 467888888888888899999999886542 267789999999999999999988732222211 00011122222223
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHH--HHHHHHhCCChhHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS--MLTGYVQNDNAREA 160 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A 160 (644)
+...++...+..-|+..++.. +-|...|..|..+|.++|++..|.++|.+.....|+.. |.. ....-+..|.+.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 445677777888788777754 45778899999999999999999999988766423221 111 11223344555555
Q ss_pred HHHHHHhHhhhhcc--------------------------------------------CCCCCC------------CCCc
Q 006457 161 LLLFKEFLLEESEC--------------------------------------------GGASEN------------SDNV 184 (644)
Q Consensus 161 ~~~~~~m~~~~~~~--------------------------------------------~~~~~~------------~~~~ 184 (644)
+..+......-... ...+.. ...+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 55554443211100 000000 0001
Q ss_pred ---cCCHhhHHHHHHHhhcCCCchHHHHHHHH-----HHHhCCCCCccHHHHHHHHHHh----cC----CHHHHHHHHhc
Q 006457 185 ---FVDSVAIASVLSACSRVTVNGVTEGAHGF-----VIKRGFDSEVGVGNTLIDAYAR----GG----HVDVSRKVFDG 248 (644)
Q Consensus 185 ---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 248 (644)
.|+.....++..-.-..+....-. ++-. .....+..++..|..|+..|.+ +| +...|...+..
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111111111111111111110000 0000 0001112223333333333322 11 12345555544
Q ss_pred C---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCch
Q 006457 249 M---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV 325 (644)
Q Consensus 249 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 325 (644)
. ...+...||.|.-. ...|.+.-|.-.|-+-. ...+-...+|..+.-.|....+++.|...+...+... +.+.
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~--~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSR--FSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhh--hccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 3 23456666665544 33345555554444443 1223345556555556666677777777777665543 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhc-----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCCC
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQM-----K---EKNVRSWTAMIAGYGMHCRAREALDLFYKMIK---------AGVR 388 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 388 (644)
..|-...-..-..|+.-++..+|..- . .++..-|-+-..-..++|+.++-+..-++.-. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 33322222223455555666665531 1 13444454444455566666554444333221 1234
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 006457 389 PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGC----MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGS 464 (644)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 464 (644)
-+...|........+.+.+..|.+...+.+.=...+-+...|+. +...+...|.++.|..-+...+..-|..+-.+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 45566777777777777777777666665322222344455553 33445566778877766665544444444444
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchh---HHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGY---HVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-+.. .-.|+++++.+.|++++.+-.++... ..-++......+.-+.|...+-+..
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 3333 34578899999999998875444332 2233334455666666666554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-05 Score=71.94 Aligned_cols=314 Identities=13% Similarity=0.069 Sum_probs=188.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHH-HHHHh
Q 006457 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA-IKSCS 84 (644)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 84 (644)
-+.+++..+.+..++++|.+++....++ | +....+.|.-+|-...++..|-..++++-.. .|...-|..- ...+-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3778888999999999999999776554 3 5567788888888999999999999999873 4555444432 23445
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 85 ALHDLHSGKQAHQQAFIFGFHRDVFVSSALI--DMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
+.+.+..|..+...|... +....-..-+ ...-..+++..+..+.++.+.. .+..+.+...-...+.|+++.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHH
Confidence 667788888887776542 2211111111 1223568999999999999842 455566666666778999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
-|+...+ ..|..| ...|+..+..+ +.++...|.+...+++.+|+...+...- |..-+.
T Consensus 166 kFqaAlq-----------vsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~teg 223 (459)
T KOG4340|consen 166 KFQAALQ-----------VSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGI---------GMTTEG 223 (459)
T ss_pred HHHHHHh-----------hcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceecc
Confidence 9999873 445554 45677666544 5688899999999999988653322110 000000
Q ss_pred HHHHhcCCCC-------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 243 RKVFDGMIEK-------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 243 ~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
.+ .+.+..+ -+..+|.-...+.+.|+++.|.+.+..|..+..-..|++|...+.-.- ..+++..+..-+..
T Consensus 224 iD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 224 ID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQF 301 (459)
T ss_pred Cc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHH
Confidence 00 0000000 012333333444556666666666666643333444555554432211 12334444444444
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
+...+. ....++..++-.|||..-++.|-.++.+-.
T Consensus 302 LL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 302 LLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 444432 233455556666666666666666665433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-05 Score=86.81 Aligned_cols=323 Identities=12% Similarity=0.000 Sum_probs=204.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----CC----C--H--hHHHHHHHHHHHC
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI----EK----D--A--VTWNSIIAIYAQN 267 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~~~~ 267 (644)
..|....+......+.......++.........+...|++++|...++... .. + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555443211112233344455566678899999988887651 11 1 1 1122233456689
Q ss_pred CChhHHHHHHHHhHHcCCCCCCh----hhHHHHHHHHHccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhc
Q 006457 268 GLAAEALDVFDQMVKSTDVKCNA----VTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLE-ESVIVGTSIIDMYCKC 338 (644)
Q Consensus 268 g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~ 338 (644)
|++++|...+++..+... ..+. ...+.+...+...|+++.|...+...... |.. ........+...+...
T Consensus 466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 999999999998762211 1121 23445555667889999999999887653 211 1123455667788899
Q ss_pred CCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHc
Q 006457 339 GQVDLARKAFNQMKE-------KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAG--VRPN--YITFVSVLSACSH 403 (644)
Q Consensus 339 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~ 403 (644)
|+++.|...+++... ++ ...+..+...+...|++++|...+++..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 1234455566777899999999999876531 1222 2344445567778
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhc
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHY-----GCMVDLLGRAGKLKEAYDLIEGMKVK--ADF----VVWGSLLGACRIH 472 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~ 472 (644)
.|++++|...+..+..-.........+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988874311111111111 11224455689999999998775311 111 1234566777889
Q ss_pred CChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 473 KNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|+.++|...++++++.. +.....+..++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 2223467788999999999999999999887644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-05 Score=71.25 Aligned_cols=409 Identities=12% Similarity=0.049 Sum_probs=207.6
Q ss_pred ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHH-HHHHHH
Q 006457 74 STFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS-MLTGYV 152 (644)
Q Consensus 74 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-li~~~~ 152 (644)
--+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|-...++..|...++++....|...-|.. -...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555555555556666666655554433 223444455555666666666666666666554333333322 123445
Q ss_pred hCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH--hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 006457 153 QNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA--CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLI 230 (644)
Q Consensus 153 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 230 (644)
+.+.+.+|+.+...|. .. |+-..-..-+.+ .-..+++-.++.+.++... ..+..+.+...
T Consensus 90 ~A~i~ADALrV~~~~~------------D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~g 151 (459)
T KOG4340|consen 90 KACIYADALRVAFLLL------------DN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLG 151 (459)
T ss_pred HhcccHHHHHHHHHhc------------CC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccch
Confidence 5666777777776664 11 111111111111 1233455555555444321 12344444455
Q ss_pred HHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhh----HHHHHHHHHc
Q 006457 231 DAYARGGHVDVSRKVFDGMIE----KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT----LSAVLLAIAH 302 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t----~~~ll~a~~~ 302 (644)
....+.|+++.|.+-|+...+ .....||..+. ..+.|+++.|++...++. ..|++..+.. -.-.+.+ ..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDv-rs 228 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDV-RS 228 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCch-hc
Confidence 555677777777777776643 24556665443 345567777777777776 5554321110 0000000 00
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
.|+ ...++...+ +..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+
T Consensus 229 vgN---t~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 229 VGN---TLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred ccc---hHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 000 001111000 122333344567889999999999999853 667765553222 2344555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC
Q 006457 378 LFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI-EPGVEHYGCMVDLLG-RAGKLKEAYDLIEGMKV 455 (644)
Q Consensus 378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 455 (644)
-+.-+.+.+ +-...||..++-.||+..-++.|-.++.+-.. ... -.+...|+ |++++. ..-..++|.+-+..+..
T Consensus 298 KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 298 KLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 555555542 23567999999999999988888887764311 011 11233343 344443 34567777766655410
Q ss_pred CCCHHHHHHHHHHH-HhcCChh----HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGAC-RIHKNVD----LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.--...-..-+..- .++.+-+ .+.+-+++.+++. ......-++.|.+..++..+.+.|..-.+
T Consensus 375 ~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 375 MLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000001111111 1222222 2333344444432 12455667889999999999999987654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-05 Score=69.98 Aligned_cols=287 Identities=12% Similarity=0.145 Sum_probs=159.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHH---HHHHHCCChhHHHHHHHHhHHcCCCCCChhhH-HHHHHHHHccc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIEKDAVTWNSII---AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTL-SAVLLAIAHLG 304 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~-~~ll~a~~~~~ 304 (644)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-+.... ..+||-..- ..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhhhhcc
Confidence 444555566666666666666665555554443 35666666666666565555 345553221 11122345566
Q ss_pred cHHHHHHHHHHHHHhCCCCc--hhH------------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEES--VIV------------GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYG 367 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (644)
.++.|..=|+.++++..... ... ....+..+...|+...|......+.+ -|...|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 66666666666665432111 001 11122234445666666666665553 25555666666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH----HHHH---------H
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH----YGCM---------V 434 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---------i 434 (644)
..|++..|+.=++..-+.. .-+..++--+-..+-..|+.+.++...++. ..+.||-.. |..| +
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC---LKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC---LKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH---HccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7777777766655554432 223334444444555566666666555554 235555321 1111 1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKADF--V---VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
....+.++|-++++-.++. +..|.. + .+..+-.++...+++.+|++...++++++|++..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 1223445565555555443 344431 1 233344556677788888888888888888888888888888888888
Q ss_pred chHHHHHHHHHhhC
Q 006457 509 WEDVERTRSLMKNR 522 (644)
Q Consensus 509 ~~~a~~~~~~m~~~ 522 (644)
|++|+.-++...+.
T Consensus 357 YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 357 YDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888877776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00014 Score=75.69 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.....++..|.++|.|..|.+-|.+.
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhh
Confidence 35667888999999988887766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-06 Score=78.35 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-V---RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY----ITF 394 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 394 (644)
...+..+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+. .|+. .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 44455566666777777777777766553 22 1 34566666777777777777777777653 2221 133
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006457 395 VSVLSACSHA--------GLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSL 465 (644)
Q Consensus 395 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 465 (644)
..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333444433 5566666666666442 2332 122111111 0000000 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999987765 468899999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-08 Score=58.47 Aligned_cols=33 Identities=42% Similarity=0.668 Sum_probs=26.1
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 006457 218 GFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI 250 (644)
Q Consensus 218 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 250 (644)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887773
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.6e-05 Score=78.01 Aligned_cols=403 Identities=11% Similarity=0.040 Sum_probs=214.5
Q ss_pred HHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHC-C-------C-CCCcccHHHHHHHHhc
Q 006457 15 NVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL-S-------L-TPTRSTFPCAIKSCSA 85 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------~-~p~~~~~~~ll~~~~~ 85 (644)
.|.--|+.+.|.+-..-+... ..|..|.+.|.+..+.+-|.-.+..|... | . .|+ .+=..+.-....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 366678888888877776654 57999999999999988888877777531 1 1 222 222222223356
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHH
Q 006457 86 LHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFK 165 (644)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 165 (644)
.|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.-... .-..||..-...+-..++.+.|++.|+
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi-HLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI-HLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce-ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 788999999999887743 3445677789999999887643221 123355555556666788899998888
Q ss_pred HhHhhhhcc-------CCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 006457 166 EFLLEESEC-------GGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 166 ~m~~~~~~~-------~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
+-..+..+. +.+-...-.-+-|...|.---.-....|+.+.|..++..+. -|-+++...|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccC
Confidence 642000000 00000000000011111111111122233333333333222 12334444444555
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcccc-------------
Q 006457 239 VDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV------------- 305 (644)
Q Consensus 239 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~------------- 305 (644)
.++|-++-++- .|..+...+...|-..|++.+|...|.+.+ +|...|+.|-..+.
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 55555554432 245555667777888888888888877765 33344443322221
Q ss_pred --HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------CChhhHHHHHHHHHhc
Q 006457 306 --LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--------------KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 306 --~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~ 369 (644)
.-.|-.+|++. |. -..-.+-.|-|.|.+.+|+++--+-.+ .|....+--..-+..+
T Consensus 1022 ~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 11222222221 11 112234456677777776654322211 2444555555666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 445 (644)
.++++|..++-..++ |...+..|...| +.-..++-+.|.....-.|+ ......+.+.|.++|.+..
T Consensus 1094 ~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 777777777665543 233444444332 22233333333221112232 3456677788888998888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
|-+-|.+.+.+- .-+.++.+.||.+
T Consensus 1164 AtKKfTQAGdKl------~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1164 ATKKFTQAGDKL------SAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHHhhhhhHH------HHHHHHHhcCCcc
Confidence 888888776331 2334455556544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=58.01 Aligned_cols=33 Identities=42% Similarity=0.694 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667788888888888888888888888887774
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-05 Score=78.72 Aligned_cols=462 Identities=12% Similarity=0.036 Sum_probs=261.4
Q ss_pred chHHHHHHhhcCCC-CC-cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHH
Q 006457 22 NTNLTTLFNKYVDK-NN-VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQA 99 (644)
Q Consensus 22 ~~~A~~~f~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 99 (644)
...|...|-+..+. |+ ...|..|...|...-+...|.+.|+...+.. ..+......+.+.++...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45566655443333 11 2368888888888778888999999888754 235667778888899999999888883222
Q ss_pred HHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCC
Q 006457 100 FIFGF-HRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGA 177 (644)
Q Consensus 100 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 177 (644)
-+... ..-..-|-.+--.|...++...|..-|+..... +.|...|..+..+|...|++..|+++|.+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA---------- 622 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA---------- 622 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh----------
Confidence 21110 001112222334466778888888888877665 558889999999999999999999999884
Q ss_pred CCCCCCccCCHhhHHHHHHH--hhcCCCchHHHHHHHHHHHhC------CCCCccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 178 SENSDNVFVDSVAIASVLSA--CSRVTVNGVTEGAHGFVIKRG------FDSEVGVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 178 ~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
.-+.|+.. |.....+ -+..|...++...++.++... ...-..++-.+...+.-.|-...|...|+.-
T Consensus 623 ----s~LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 623 ----SLLRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred ----HhcCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34556532 2222222 345577777777777665421 1111112222222222333333334443332
Q ss_pred CC-----------CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccH---H---HHHHH
Q 006457 250 IE-----------KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL---R---LGKCI 312 (644)
Q Consensus 250 ~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~---~---~a~~i 312 (644)
.+ .+...|-.+ ..|..+|-+.. .. .|+......+..-.-+.+.. + .|.+.
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e--~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE--PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc--cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 11 122222222 23334444442 11 33333333222212222222 1 11111
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCK----CG----QVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
+-.-.+ +..+...|..|+.-|.+ +| +...|...+.... ..+..+||.|.-. ...|++.-|.--|-+
T Consensus 765 ~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 765 GIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred hhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 111111 11223333333333322 22 2234555555443 3577788887655 555667666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM------- 453 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~------- 453 (644)
-... .+-+..+|..+.-.|....+++.|...|...+ .+.| +...|--..-.....|+.-++..+|..-
T Consensus 842 s~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~ 917 (1238)
T KOG1127|consen 842 SRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE 917 (1238)
T ss_pred hhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc
Confidence 5553 24466778888777888888999999888873 4555 4555554444555677777787777642
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhH----------HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 454 KVKADFVVWGSLLGACRIHKNVDL----------GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 454 ~~~p~~~~~~~ll~~~~~~g~~~~----------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+.-|+..-|-.-..--..+|+.++ |--+.++.+.-.|+...+|...+...-+.+.+.+|.+...+.
T Consensus 918 gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 918 GKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 233455555554444455555544 334455556667888888888888888888888877766554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00019 Score=72.87 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=169.2
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH-HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHH--
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA-VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTS-- 330 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~-- 330 (644)
...|..+...+...|+.+.+...+....+.....++...... ....+...|+++.|..+++...+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 456667777777788888877777666523332333322222 2334467799999999999988764 334444432
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 331 -IIDMYCKCGQVDLARKAFNQMKEKN---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 331 -li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
+.......|..+.+.+.+......+ ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223456666777666533222 2344455668889999999999999999853 3445677788889999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC--CHHHH--H--HHHHHHHhcCChhH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGV--EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA--DFVVW--G--SLLGACRIHKNVDL 477 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~--~--~ll~~~~~~g~~~~ 477 (644)
+++|..+++.........|+. ..|..+...+...|++++|.+++++.. ..| ..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999886532222332 345678889999999999999999862 223 21111 1 23333445554444
Q ss_pred HHHH---HHHhhccCCC--CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 478 GEIA---AKKLFELEPN--NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 478 a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+.+. ........|. ........+.++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4433 2221111122 12223356677889999999999999987543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=88.49 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=164.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK--------NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
+.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 455667777888888899999999999887641 2457888888888888888889999999873 223456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGAC 469 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 469 (644)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999998766 66788999999999999999999998875 33332 33445555666
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
.++||.+.+..+|+.++...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-06 Score=75.41 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGAC-RIHKN--VDLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 478 (644)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566667666666644 23446778888888888888888888888876 3445 555676776654 56666 5899
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0002 Score=67.14 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=189.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH---HhhcCCCchHHHHHHHHHHHhCCCCC
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS---ACSRVTVNGVTEGAHGFVIKRGFDSE 222 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~ 222 (644)
-+...+...|++.+|+.-|.... ..|+..|.++.+ .|...|....|..=+..+++. +||
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAv----------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAV----------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH----------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--Ccc
Confidence 34566777888888888887754 334444444433 355556555555555555443 455
Q ss_pred ccHH-HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 223 VGVG-NTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 223 ~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
-..- ---...+.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-+ .....+..+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~-----------------~l~~ql~s~~ 166 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW-----------------VLVQQLKSAS 166 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH-----------------HHHHHHHHHh
Confidence 3221 112345667777888777777764432200 00001111100011111 1122233334
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDL 378 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (644)
..|+...+......+++.. +.|...+..-..+|...|++..|..=+.... ..|....--+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 4566666666666666643 4566666666777777777777765544333 34555555566666677777777777
Q ss_pred HHHHHHcCCCCCHHH----HHHH---------HHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhc
Q 006457 379 FYKMIKAGVRPNYIT----FVSV---------LSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRA 440 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~ 440 (644)
.++-++ +.||... |-.| +......+.+.++.+-.+...+ ..|. ...+..+-..+...
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccccc
Confidence 666665 4565432 1111 1122345566666666666543 2343 22344455667778
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-..+ +.|.++.++
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkq 390 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQ 390 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHH
Confidence 8999999887765 55665 66777777888888899999999999999999886544433 566666666
Q ss_pred HhhCCCc
Q 006457 519 MKNRRLA 525 (644)
Q Consensus 519 m~~~~~~ 525 (644)
..++..-
T Consensus 391 s~kRDYY 397 (504)
T KOG0624|consen 391 SGKRDYY 397 (504)
T ss_pred hccchHH
Confidence 6555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-06 Score=71.70 Aligned_cols=121 Identities=9% Similarity=-0.005 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 006457 377 DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-K 454 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 454 (644)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555554 34553 44566677788888888888888743 344 5777788888888888888888888876 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
..| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56678888888888888888888888888888888888877766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.7e-05 Score=73.41 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRA--REALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
+++++..++++.+ ++..+|+.....+.+.|+. ++++++++++.+.. +-|...|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555544432 2333444443333333432 45566666665532 2245556555556666666666666666
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHH
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRA---GK----LKEAYDLIEG-MKVKA-DFVVWGSLLGACRIH----KNVDLGEIAA 482 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 482 (644)
.+++. -.-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66442 122344444444333332 22 2345555533 34444 566888888888774 3456688888
Q ss_pred HHhhccCCCCchhHHHHHHHHhhc
Q 006457 483 KKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.++...+|.++.+...|+++|+..
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 998888999999999999999864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-06 Score=70.44 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+....-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556677788899999999999976 3445 5668889999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 504 ANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
...|+.+.|++.|+...... ..+|+..++.+++......+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999887532 236777777777776666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0037 Score=62.63 Aligned_cols=435 Identities=12% Similarity=0.133 Sum_probs=213.6
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.|..+|+.|+.-+..+ ..++++..++++... | ....|..-|.......+++....+|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 45678999999988888 899999999988643 3 45679999999999999999999999987643 3455566555
Q ss_pred HHHhcc-CCcHHH----HHHHHHHH-HhCCCCC-hhHHHHHHHHH---------HhCCChHHHHHHHhhCCCCCC-Ce-e
Q 006457 81 KSCSAL-HDLHSG----KQAHQQAF-IFGFHRD-VFVSSALIDMY---------SKCGELSDARKLFDEIPQRIR-NI-V 142 (644)
Q Consensus 81 ~~~~~~-~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~~~-~~-~ 142 (644)
.--.+. ++.... .+.|+..+ +.|+++- -..|+..+..+ ....+++...++++++...+- |. .
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 544332 333322 23344433 3465443 33566655433 334466777888888766411 11 1
Q ss_pred cHHH------HHHH-----HH--hCCChhHHHHHHHHhHhhhh--ccCCCCCCCCCccCCHhh---HHHHHHHhhcCCCc
Q 006457 143 SWTS------MLTG-----YV--QNDNAREALLLFKEFLLEES--ECGGASENSDNVFVDSVA---IASVLSACSRVTVN 204 (644)
Q Consensus 143 ~~~~------li~~-----~~--~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~~~~ 204 (644)
.|+- =|+. +. +...+-.|.++++++..... ....+..+..|.+..... +-..|.. -+.+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 1221 1111 11 12344567777776653211 000000000110000000 1111211 111111
Q ss_pred h------HHH---HHHHHH-HHhCCCCCccHH-H----HHHHHHHhcCCH-------HHHHHHHhcCCCC----CHhHHH
Q 006457 205 G------VTE---GAHGFV-IKRGFDSEVGVG-N----TLIDAYARGGHV-------DVSRKVFDGMIEK----DAVTWN 258 (644)
Q Consensus 205 ~------~a~---~~~~~~-~~~g~~~~~~~~-~----~li~~~~~~g~~-------~~A~~~~~~~~~~----~~~~~~ 258 (644)
. ... -++++. .-.++.|++... . ..-+.+...|+. +++..+++...+. +...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011 111111 112333332211 0 111122333332 3344444433221 222222
Q ss_pred HHHHHHH---HCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 006457 259 SIIAIYA---QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE-SVIVGTSIIDM 334 (644)
Q Consensus 259 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~ 334 (644)
.+..--- .....+...+.+.+........|+ .+|...++...+..-++.|+.+|.++.+.+..+ ++.++++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2221100 001234444555555422233333 345566666666666777777777776665554 66666666665
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHH
Q 006457 335 YCKCGQVDLARKAFNQMKE--KNVRS-WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY--ITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 409 (644)
|| .++.+-|.++|+.-.+ +|... -+..+.-+...++-..|..+|++....++.||. ..|..+|.--+.-|++..
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 54 4566666666665432 23322 234445555556666666666666666555543 356666666666666666
Q ss_pred HHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCH
Q 006457 410 GWHWLNTMGHEFN--IEPGVEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 410 a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~ 443 (644)
+.++-+++...+. ..+...+-..+++.|.-.+..
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 6666555543322 223333334445555444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-05 Score=69.91 Aligned_cols=135 Identities=18% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGS 464 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 464 (644)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...|++. +.++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355433335566677777887777777766522 23345566667888888999999999988887 34567888888
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+..+|.+.|+.+.|...+.+++++.|+++.+...|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999988999999999998888776543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-06 Score=69.75 Aligned_cols=107 Identities=8% Similarity=-0.074 Sum_probs=91.1
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455542 34455 3556788899999999999999986 3444 67799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 490 PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-05 Score=67.45 Aligned_cols=157 Identities=10% Similarity=0.119 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 410 (644)
-+-.|.+.|+++.+..-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888887755544433221 01223567788888888887753 55778899999999999999999
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDL-LGRAGK--LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
...|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998854 445 57788888886 467787 59999999987 4455 566888888999999999999999999
Q ss_pred hhccCCCCchhHHHH
Q 006457 485 LFELEPNNCGYHVLL 499 (644)
Q Consensus 485 ~~~~~p~~~~~~~~l 499 (644)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998765544333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.9e-05 Score=80.91 Aligned_cols=138 Identities=7% Similarity=-0.032 Sum_probs=111.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGC 432 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 432 (644)
++..+-.|.....+.|++++|+.+++...+ +.||. .....+...+.+.+.+++|...+++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 467788888888999999999999999988 56765 4667778888999999999999998844 455 4677788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
+..++.+.|++++|.++|++.- -.|+ ..+|.++..++...|+.++|..+|+++++...+-...|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888999999999999999873 3343 678888999999999999999999999987644434433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=75.83 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=137.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
+++|--..-..+...+..+|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556667888889999999999999875 4677788899999998899888888777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (644)
..-+...+++|+++++..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888888888766332 1111222223467777777777643 4433 34477777777777777777
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|.+.|.....++|++...+..++.+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00023 Score=78.52 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=94.5
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhhHHHHHHH
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKM-DLE---ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-N-VRSWTAMIAG 365 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~ 365 (644)
.|-..+.-....++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3333444444444555555555444431 111 11224444444444445555555555555431 2 2345555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
|.+.+..++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+...-.-......-.+++-.+.|+.+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 55555555555555555543 23334455555555555555555555555553311000123333344445555566666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 446 AYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 446 A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+..+|+.. ..+.....|+..+..-.+||+.+.++.+|++++++.
T Consensus 1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 55555544 111133456666666666666666666666665543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.3e-05 Score=75.56 Aligned_cols=242 Identities=11% Similarity=0.047 Sum_probs=165.0
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
-+.++|+..+|.-.|+..+ .. -+-+...|..|....+..++-..|...+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAV-kq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAV-KQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHH-hh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3567777777777777776 22 23355667777777777777777777777777754 445666667777788888777
Q ss_pred HHHHHHHhcCC--C----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 343 LARKAFNQMKE--K----------NVRSWTAMIAGYGMHCRAREALDLFYKMI-KAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 343 ~A~~~~~~~~~--~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
.|.+.|+.-.. | +...-+. ..+..........++|-++. +.+..+|+.....|.--|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 78777765421 0 1000000 11122222345556666555 44534566666666666788899999
Q ss_pred HHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 410 GWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
|...|+.+. .++| |..+||.|...++...+.++|+..|+++ .++|+-+ ++..|.-+|...|.+++|...+-.++
T Consensus 449 aiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999994 4677 5788999999999999999999999987 6888755 78889999999999999999999988
Q ss_pred ccCCCC----------chhHHHHHHHHhhcCCchHH
Q 006457 487 ELEPNN----------CGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 487 ~~~p~~----------~~~~~~l~~~~~~~g~~~~a 512 (644)
.+.+.+ ..++..|-.++.-.++.|-+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 875441 13555555555555555533
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00022 Score=73.73 Aligned_cols=215 Identities=10% Similarity=0.093 Sum_probs=170.3
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHH
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLA 299 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 299 (644)
+|--..-..+...+.+.|-...|..+|++ ...|...|.+|...|+..+|..+..+-. + -+||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhh
Confidence 34444556788899999999999999988 4678889999999999999999988876 3 68899999999988
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 376 (644)
.....-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888888888888765432 1111222223368899999999865543 3568888888899999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 377 DLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998876 46754 5899999999999999999999999866 45 445556666777788999999999998877
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=69.88 Aligned_cols=181 Identities=16% Similarity=0.030 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---hHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-E-SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VR---SWT 360 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 360 (644)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777778888999999999999999875421 1 124567788999999999999999999864 32 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHH
Q 006457 361 AMIAGYGMH--------CRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG 431 (644)
Q Consensus 361 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 431 (644)
.+..++.+. |+.++|.+.|+++.+. .|+.. ....+... .. .. ... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH---------HHHHH
Confidence 556666654 7889999999999875 45432 22211111 00 00 000 01122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGM----KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
.+...|.+.|++++|...+++. +..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566788889999998888776 2223 345788888899999999999988887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00053 Score=68.52 Aligned_cols=101 Identities=15% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHHCCChhHH
Q 006457 197 ACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--KD-AVTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 273 (644)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4556788888888888877665 44777888888888888888888765554433 22 34677788888888888888
Q ss_pred HHHHHHhHHcCCCCCChhhHHHHHHHH
Q 006457 274 LDVFDQMVKSTDVKCNAVTLSAVLLAI 300 (644)
Q Consensus 274 ~~~~~~m~~~~~~~p~~~t~~~ll~a~ 300 (644)
+..|.+-. . ..+.|...++.+..+.
T Consensus 90 ~~ay~~GL-~-~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGL-E-KDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHh-h-cCCchHHHHHhHHHhh
Confidence 88887765 1 2233445555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-06 Score=52.95 Aligned_cols=34 Identities=32% Similarity=0.659 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00019 Score=65.31 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
+-..+...|+.+....+..+.... .+-|............+.|++.+|...|.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 344455555555555554443321 122333333455555666666666666666633 34445666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHH
Q 006457 442 KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
++++|..-|.+. .+.| +....+.|...+.-.|+.+.|+.++.......+.++..-..|+-+....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666655544 2233 34455566666666666666666666666666656666666666666666666665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0022 Score=58.51 Aligned_cols=249 Identities=13% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHhcCCHHHHHHHHhcC-CC-CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH-
Q 006457 233 YARGGHVDVSRKVFDGM-IE-KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG- 309 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a- 309 (644)
|.-.|++..++..-... .. .++..-.-|-++|...|.+...+. ++. .+-.|....+..+.......++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~--~~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIK--EGKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccc--cccCChHHHHHHHHHHhhCcchhHHHH
Confidence 33456666655544433 22 334444445566777776543322 221 22233333333333333333333322
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
..+.+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|...+++|++- -
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 334444444444444444444455678888888888888774333333333 23345566778888888888762 3
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 006457 390 NYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWG 463 (644)
Q Consensus 390 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 463 (644)
+..|.+.|..++.+ .+.+.+|.-+|++|.. ...|+..+.+-+..++...|++++|..+++.. +...++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 56677766666543 3457777778887743 35677777777777777777777777777765 2222444444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHhhccCCCCc
Q 006457 464 SLLGACRIH-KNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 464 ~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.++..-... .+.+.-.+...++....|..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 444333333 344455566666666666643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.019 Score=61.32 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 461 VWGSLLGACRIHKNVD---LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
+-+.|+..+++.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-...|.++++.+.-+.+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 4466777777777654 5666777777788888888888888888888888888888887655554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00057 Score=74.76 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..|..+|-+.|+.++|.++++++.+ .|....|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555556666666666555543 2444555555555555 555555555555432 333
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
..++..+.+++..+.. ..|+ ...+-.+..... ...+..--+.++--+-..|...++++.+..++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3445555555555533 1121 211111111111 11111112334444445566666677777777
Q ss_pred HHhhccCCCCchhHHHHHHHHh
Q 006457 483 KKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7777777766666666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00095 Score=66.16 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=77.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
....|.+++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3455677777777777654 23334555566667777777777777777765 34454 45666666777777777777
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..++.....+|+++..|..|+.+|...|+..+|...+.++-
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777777777777777777776666666555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=52.07 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=31.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCc
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTR 73 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 73 (644)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00058 Score=66.90 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=132.7
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--H
Q 006457 335 YCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHC-RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV--Q 408 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~--~ 408 (644)
+...++.++|..+.+++.+. +..+|+.-...+...| ++++++..++++.+.. +-+..+|..-...+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 44556788888888877643 4456776666677777 5799999999999864 33455666555555566653 6
Q ss_pred HHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCh----hHH
Q 006457 409 EGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIH---KNV----DLG 478 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~~a 478 (644)
++..+++.+.. +.| +..+|+...-++.+.|++++|++.++++ ... -|...|+.....+... |.. +..
T Consensus 126 ~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 77888888854 344 5788888888999999999999999987 322 3667888777666544 222 467
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhc----CCchHHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANA----GRWEDVERTRSLMKN 521 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 521 (644)
.....++++++|++.+++..+..++... ++..+|.+......+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7788899999999999999999999873 445567666655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.017 Score=58.22 Aligned_cols=452 Identities=12% Similarity=0.120 Sum_probs=246.6
Q ss_pred cCCCC-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh
Q 006457 32 YVDKN-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTP-TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVF 109 (644)
Q Consensus 32 ~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 109 (644)
+...| |+.+|+.||+-+-.. ..+++.+.++++.. +-| ....|..-|..-.+.++++....+|.+.+..-+. ..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--Hh
Confidence 44444 889999999987555 99999999999986 445 4556777788888999999999999999876544 44
Q ss_pred HHHHHHHHHHh-CCChHH----HHHHHhhCCCC----CCCeecHHHHHHH---------HHhCCChhHHHHHHHHhHhhh
Q 006457 110 VSSALIDMYSK-CGELSD----ARKLFDEIPQR----IRNIVSWTSMLTG---------YVQNDNAREALLLFKEFLLEE 171 (644)
Q Consensus 110 ~~~~li~~~~~-~g~~~~----A~~~~~~~~~~----~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~ 171 (644)
.|..-+..--+ .|+... ..+.|+-.... ..+-..|+..+.- |..+.+++...++|+++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral--- 164 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL--- 164 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh---
Confidence 55555543322 233322 12222221111 1344456665542 334446666777777776
Q ss_pred hccCCCCCCCCCcc------CCHhhHHHHHHH-------hhcCCCchHHHHHHHHHHH--hCCCCCccHHHHHHHHHHhc
Q 006457 172 SECGGASENSDNVF------VDSVAIASVLSA-------CSRVTVNGVTEGAHGFVIK--RGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 172 ~~~~~~~~~~~~~~------p~~~t~~~ll~~-------~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~ 236 (644)
...+. -|-.+|-.-+.. --++..+..|++++.++.. .|+.....+ .-..
T Consensus 165 ---------~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~ 228 (656)
T KOG1914|consen 165 ---------VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPK 228 (656)
T ss_pred ---------cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCC
Confidence 11111 011111111110 0111223333333333321 121111100 0000
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCCh--------hHHHHHHHHhHHcCCCCCChhh-HHHHH----HHHHcc
Q 006457 237 GHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLA--------AEALDVFDQMVKSTDVKCNAVT-LSAVL----LAIAHL 303 (644)
Q Consensus 237 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~p~~~t-~~~ll----~a~~~~ 303 (644)
|--++.. -+..|-.+|..=-.++.- ....-.+++...-.+..|+..- +...+ +.+...
T Consensus 229 ~T~~e~~---------qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 229 GTKDEIQ---------QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred CChHHHH---------HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHh
Confidence 0000000 011233333221111110 0111112221112233333211 11111 112222
Q ss_pred cc-------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---C-ChhhHHHHHHHHHhc
Q 006457 304 GV-------LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG---QVDLARKAFNQMKE---K-NVRSWTAMIAGYGMH 369 (644)
Q Consensus 304 ~~-------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 369 (644)
|+ .+++..+++..+..-...+..+|..+.+---..- ..+.....+++... . -..+|-..+..-.+.
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~ 379 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA 379 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh
Confidence 33 3455566666555433334444444433211111 24444455555442 1 234677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
.-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+.+| -+..--...++-+...++-..|..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHH
Confidence 77889999999999998888 6667777777665 5788999999998766543 344455678888999999999999
Q ss_pred HHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC----chhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 449 LIEGMK---VKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN----CGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 449 ~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+|++.- ..|| ...|..+|.--..-||...+.++-++.....|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999872 2333 4699999999999999999999988887765521 123345556677777666555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.7e-05 Score=64.99 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=76.1
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 423 IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 423 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
..| +......+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445566677777788888888888775 3333 556777777888888888888888888888888888888888
Q ss_pred HHHHhhcCCchHHHHHHHHHhhC
Q 006457 500 SNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0007 Score=67.08 Aligned_cols=144 Identities=19% Similarity=0.105 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 435 (644)
.+.-..-.+...|++++|+..++.+... .||. .........+...++.++|.+.++.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444556678999999999998875 5654 4455556678899999999999999954 5676 666777889
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++..+. +..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999887 23447889999999999999988776654 45678899999999
Q ss_pred HHHHHHhhCC
Q 006457 514 RTRSLMKNRR 523 (644)
Q Consensus 514 ~~~~~m~~~~ 523 (644)
.......++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999888764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-06 Score=50.17 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00067 Score=73.45 Aligned_cols=143 Identities=8% Similarity=0.039 Sum_probs=116.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFV 395 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 395 (644)
.++.++..+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3566788888899999999999999999999874 5 4567888899999999999999999999985 5654 4556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGSLL 466 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 466 (644)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666788899999999999999965 22334788999999999999999999999987 2334444555444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=72.68 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=99.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
...+|+..+...+.++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456677777788889999999988553 354 4445777777788888888888776 3333 5566666667888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+-.+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0061 Score=59.63 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (644)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-..+... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556677777777777777777777777778888887777765554321 123366777777777777777
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 409 EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777776653 1134566777777777777665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00021 Score=71.36 Aligned_cols=127 Identities=9% Similarity=0.085 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..+.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778899999999999988777677778888888888899999999988652 3356666666677889999
Q ss_pred HHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 006457 407 VQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA 457 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 457 (644)
++.|+.+.+++.. ..|+ ..+|..|...|.+.|++++|+..++.+|+.|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999854 5564 6699999999999999999999999997554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.4e-06 Score=50.48 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCC
Q 006457 38 VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTP 71 (644)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 71 (644)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=60.47 Aligned_cols=114 Identities=9% Similarity=-0.026 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 006457 378 LFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV 455 (644)
Q Consensus 378 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 455 (644)
.|++... ..|+ ......+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 3443 344556667778888888888888887542 2336777888888888889999998888876 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 456 KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 46677777888889999999999999999999887553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0033 Score=56.97 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=115.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMI---AGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
-++-+...+|+.+.|...++.+..+=..++.... .-+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3444555677777777777776542222221111 12445688999999999998865 5566777666666666777
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRI---HKNVDLGEIA 481 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~ 481 (644)
.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+.. ..|.+.+...
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788887777755 46778999999999999999999999999987 2445 44444455544433 3478899999
Q ss_pred HHHhhccCCCCchhHHHH
Q 006457 482 AKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l 499 (644)
+.+++++.|.+...+..+
T Consensus 214 y~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHhChHhHHHHHHH
Confidence 999999999765555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=72.03 Aligned_cols=217 Identities=9% Similarity=0.067 Sum_probs=116.3
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCC-CCCcc-hHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCc------
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVD-KNNVF-SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTR------ 73 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------ 73 (644)
.+++...+-.|++.|.+.+++++|.++.+.... .|+.. .|-.+...+.+.++..++..+ .+... +..+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 356777888899999899999999988875432 23332 233333355666666665555 22221 11111
Q ss_pred -------------ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC
Q 006457 74 -------------STFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN 140 (644)
Q Consensus 74 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 140 (644)
..+-.+..+|-+.|+.+++.++++.+++.. +-++.+.|.+...|+.. ++++|..++.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---- 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---- 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH----
Confidence 233333334444444555555555554443 33444444444444444 44555444444332
Q ss_pred eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC
Q 006457 141 IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKR-GF 219 (644)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~ 219 (644)
.|...+++.++.+++.++.. ..| .+.+.-.++.+.+..+ |.
T Consensus 178 ---------~~i~~kq~~~~~e~W~k~~~--------------~~~---------------~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 178 ---------RFIKKKQYVGIEEIWSKLVH--------------YNS---------------DDFDFFLRIERKVLGHREF 219 (906)
T ss_pred ---------HHHhhhcchHHHHHHHHHHh--------------cCc---------------ccchHHHHHHHHHHhhhcc
Confidence 23344444444444444431 011 1222333333333332 33
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYA 265 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 265 (644)
..-+.++-.|-..|-+..+++++..+|..+.+ .|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455666677888899999999999998843 36666777777776
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.8e-05 Score=46.65 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=59.78 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 440 AGKLKEAYDLIEGM-KVKA---DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 344555567777777777777777777 666666666677778888888888888887
Q ss_pred HHH
Q 006457 516 RSL 518 (644)
Q Consensus 516 ~~~ 518 (644)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00094 Score=57.61 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=25.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
...+...|++++|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444555544444331 11222334455555666666666666655543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0096 Score=54.48 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=125.8
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHH-HHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 223 VGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEAL-DVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 223 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
+..-.-+-.+|...|.+.....-...-..+.......+......-++.++-+ ++.+.+. ......+......-...|.
T Consensus 41 ~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~aa~i~~ 119 (299)
T KOG3081|consen 41 VELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLLAAIIYM 119 (299)
T ss_pred hHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHHhhHHhh
Confidence 3333444556666666543332222222222333322222222233333333 3444444 4444444444444555678
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh----cCCHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN-VRSWTAMIAGYGM----HCRAREAL 376 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~ 376 (644)
+.+++++|.+...... ...... .=+..+.|..+++-|.+.++.|.+-| -.+.+.|..++.+ .+...+|.
T Consensus 120 ~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred cCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 8888888887776521 122222 22344567778899999999888753 4456656665543 34678899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 377 DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
-+|++|-+. ..|+..+.+....++...|++++|..+++....+ -..++.+...+|-.-.-.|...+
T Consensus 194 yifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 194 YIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChH
Confidence 999999764 6889999999999999999999999999888653 23345555555555445555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=55.70 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (644)
+..+...+...|++++|...+++. ...| +...|..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888765 3333 33567777777788888888888888888888888788888888888889
Q ss_pred CchHHHHHHHHHhh
Q 006457 508 RWEDVERTRSLMKN 521 (644)
Q Consensus 508 ~~~~a~~~~~~m~~ 521 (644)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=45.78 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=25.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCC
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSL 69 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 69 (644)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.2e-05 Score=54.73 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC-CchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG-RWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 521 (644)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988764
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=56.52 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=38.6
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLGRAGKLKEAYDLIEGMKVK-ADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~ 475 (644)
..+...|++++|...|+.+... ...|. ....-.|...+...|++++|+..++..+.. .....+......+...|+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH
Confidence 3444455555555555555432 11111 112223444455555555555555443211 1223344444555555555
Q ss_pred hHHHHHHHHh
Q 006457 476 DLGEIAAKKL 485 (644)
Q Consensus 476 ~~a~~~~~~~ 485 (644)
++|...|+++
T Consensus 135 ~~A~~~y~~A 144 (145)
T PF09976_consen 135 DEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00047 Score=57.10 Aligned_cols=92 Identities=15% Similarity=-0.006 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNI 502 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 502 (644)
-.++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555444 11121 1233344455555555555555555555555443 2345555555
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00067 Score=68.15 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 475 (644)
......|++++|+..|+.+++ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344455666666666666643 223 3455555566666666666666666554 2333 344555555666666666
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHH
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
++|+..++++++++|+++.....+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6666666666666666655544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00099 Score=55.14 Aligned_cols=102 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLG 467 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 467 (644)
+..+...+...|++++|...|..+.....-.| ....+..+...+.+.|++++|.+.|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566666666666666644211111 1234455666666777777777776655 22232 345666667
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777788888888888888887776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=52.30 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778888999999999999999998889999999999999999999988888653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0066 Score=55.06 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSV-LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
|..++-+....|+.+.|...++++.+. + |.+.-...+ ..-+-..|.+++|.++++....+ -+.|..++.-=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555667788999999999998876 3 544322211 12245578999999999999764 244677777777777
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC---CchHH
Q 006457 438 GRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG---RWEDV 512 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 512 (644)
-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++-+.|.++..+..++..+...| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888777665 355699999999999999999999999999999999999999999999987766 45567
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+++.+..+-
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777766653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0031 Score=66.21 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCChhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHh
Q 006457 353 EKNVRSWTAMIAGYGM--HC---RAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHA--------GLVQEGWHWLNTMG 418 (644)
Q Consensus 353 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 418 (644)
..|...|...+.+... .+ ....|..+|++..+ ..|+. ..+..+..++... ..+..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776433 22 36688888888888 46664 3343333222111 11222222222221
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 419 HEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 419 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.......+...|.++.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10012223455555555555556666666666655 34556556666666666666666666666666666666553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.099 Score=51.77 Aligned_cols=255 Identities=10% Similarity=0.054 Sum_probs=138.6
Q ss_pred HHHhcCCchHHHHHHhhcCCC----C----CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--
Q 006457 15 NVDKHSTNTNLTTLFNKYVDK----N----NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS-- 84 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~~~~~----p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 84 (644)
.+.+++++.+|.++|.++-.. | ..+.-+.+|++|..+ +.+.....+....+. .| ...|-.+..++.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 356789999999999988542 1 123456788888765 455555555556553 23 455666666543
Q ss_pred ccCCcHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHhCCChHHHHHHHhhCCCC------CCCeecH
Q 006457 85 ALHDLHSGKQAHQQAFIF--GFH------------RDVFVSSALIDMYSKCGELSDARKLFDEIPQR------IRNIVSW 144 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ 144 (644)
+.+.+..|.+.+..-... +.. +|-..-+..+..+...|++.+++.++++|... .-++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667888888887776654 322 23334456678888999999999998887654 3577888
Q ss_pred HHHHHHHHhC--------C-------ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC--CchHH
Q 006457 145 TSMLTGYVQN--------D-------NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT--VNGVT 207 (644)
Q Consensus 145 ~~li~~~~~~--------g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a 207 (644)
|.++-.+.+. . .++.++-..++|...+.. +...+.|....+..++....-.. .+..-
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 8755444432 1 122333333333311100 02234455444555544433221 22223
Q ss_pred HHHHHHHHHhCCCCCc-cHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCHhHHHHHHHHHHHCCChhHHHHHHH
Q 006457 208 EGAHGFVIKRGFDSEV-GVGNTLIDAYARGGHVDVSRKVFDGM--------IEKDAVTWNSIIAIYAQNGLAAEALDVFD 278 (644)
Q Consensus 208 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (644)
.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++...++.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444433333344442 233444444444 334443333332 11233456666666666666666666555
Q ss_pred HhH
Q 006457 279 QMV 281 (644)
Q Consensus 279 ~m~ 281 (644)
-+.
T Consensus 323 lL~ 325 (549)
T PF07079_consen 323 LLK 325 (549)
T ss_pred HHH
Confidence 443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.1 Score=51.12 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
+.+..|.-+...|+...|.++-.+..-||..-|-..|.+|+..++|++-..+... . -.++-|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHHHHHCC
Confidence 4555677778889999999999999889999999999999999999887664322 1 13478889999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFN 349 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (644)
...+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 999988877662 12567889999999999877643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00044 Score=64.66 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRI---HKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+-|...|--|...|.+.|+++.|..-|.+. .+.| |...+..+..++.. .....++..+++++++++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347899999999999999999999999876 3333 45566666555532 335668999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhCCCcCCC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNRRLAKTP 528 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 528 (644)
|+..+...|++.+|...++.|.+......|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0009 Score=62.21 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 477 (644)
..+.+++++|+..|..++. +.| |...|.--..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777888887777743 555 4555555677788888888887766654 455543 388888888999999999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHH
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999887666666444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.13 Score=53.52 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=102.7
Q ss_pred hcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHC-CCCCCcccHHH----H--HHHHhccCCcH
Q 006457 18 KHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL-SLTPTRSTFPC----A--IKSCSALHDLH 90 (644)
Q Consensus 18 ~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~----l--l~~~~~~~~~~ 90 (644)
..=.+++|.+..+.=| -+..|..+...-.+.-.++-|...|-+.... |++.-...-.. + ....+--|.++
T Consensus 675 e~vgledA~qfiEdnP---HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIEDNP---HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred HHhchHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 3345677777765543 4567888877766666677777766665432 32210000000 0 00011124555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC---CCCeecHHHHHHHHHhCCChhHHHHHHHHh
Q 006457 91 SGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR---IRNIVSWTSMLTGYVQNDNAREALLLFKEF 167 (644)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (644)
+|.+++-.+-+.. ..|.++.+.|++-...++++.=... ..-..+|+.+...++....+++|.+.|..-
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555444332 2345555556665555555432221 111234555555555555555555555543
Q ss_pred HhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHh
Q 006457 168 LLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFD 247 (644)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 247 (644)
. | ....+.++.+..+++..+.+. ..++.+....-.+.+++...|.-++|.+.|-
T Consensus 823 ~------------------~---~e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 823 G------------------D---TENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred c------------------c---hHhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 2 0 011222222222222222211 1234445555556666666666666665554
Q ss_pred cCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHh
Q 006457 248 GMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQM 280 (644)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 280 (644)
+-..|. +.+..|...+++.+|.++-+..
T Consensus 877 r~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 877 RRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 443332 2234455555555555554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=59.27 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777665 22222 3567777888888899999999999999988988888888888
Q ss_pred HHhhcCC
Q 006457 502 IYANAGR 508 (644)
Q Consensus 502 ~~~~~g~ 508 (644)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0031 Score=61.08 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA-CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56777777777777888888888887432 2233334333333 33356667788888888774 44567778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+.+.|+.+.|..+|++. ..-|.. ..|...+..-.++|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888876 222333 4888888888899999999999888888877753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00077 Score=62.67 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..-+.+.+++++|+..|.+. .+.| |.+-|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567789999999999886 5565 667777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 006457 512 VERTRSLMKN 521 (644)
Q Consensus 512 a~~~~~~m~~ 521 (644)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=61.97 Aligned_cols=267 Identities=10% Similarity=-0.006 Sum_probs=163.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLG 304 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~ 304 (644)
..+.+.+..++.+|++.+....+ .+..-|..-...+..-|++++|+--.+.-+ .++|. +.+..-.-+.+...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV---RLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe---ecCCCccccccchhhhhhhhH
Confidence 34556667777778777766532 245567777777778888888776665544 22222 223334444444445
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHhcCCHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KNVRSWTAM-IAGYGMHCRAREALDL 378 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~ 378 (644)
+..+|.+.++. ...+ ....|...++.+.. |-..+|..+ ..++...|++++|...
T Consensus 132 ~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 55555444431 1111 11122222222221 222334333 2356667888888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH-------------HHHHHHHhhcCCHHH
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY-------------GCMVDLLGRAGKLKE 445 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~ 445 (644)
--..++.. ..+......--.++-..++.+.|...|++.. .+.|+...- .-=.....+.|++.+
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 66665532 1122211111123445677788888888763 455543222 122345678899999
Q ss_pred HHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 446 AYDLIEGM-KVKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 446 A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
|.+.+.+. .+.| +...|-....+..+.|+.++|+.-.+.+++++|.-...|..-++++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 4444 55566666677789999999999999999999999999999999999999999999999887
Q ss_pred hhC
Q 006457 520 KNR 522 (644)
Q Consensus 520 ~~~ 522 (644)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=58.88 Aligned_cols=93 Identities=12% Similarity=-0.125 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 555666777777888888888888776 22232 3478888899999999999999999999999998888888888
Q ss_pred HHh-------hcCCchHHHHHHHHH
Q 006457 502 IYA-------NAGRWEDVERTRSLM 519 (644)
Q Consensus 502 ~~~-------~~g~~~~a~~~~~~m 519 (644)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0029 Score=63.54 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=82.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhc
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRA 440 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 440 (644)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|+..++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455677899999999999999853 34567888888899999999999999999955 455 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKADFVVWGSLLGAC 469 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 469 (644)
|++++|...|++. ...|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999986 4566655544444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0022 Score=50.08 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4445555555666666666666655532 222344444555555555555555555554321 1112234444444444
Q ss_pred hcCCHHHHHHHHHh
Q 006457 439 RAGKLKEAYDLIEG 452 (644)
Q Consensus 439 ~~g~~~~A~~~~~~ 452 (644)
..|++++|...+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=51.48 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCC-CCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCChhHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSL-TPTRSTFPCAIKSCSALH--------DLHSGKQAHQQAFIFGFHRDVFVS 111 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 111 (644)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677778999999999999999999 999999999999887542 244678899999999999999999
Q ss_pred HHHHHHHHh
Q 006457 112 SALIDMYSK 120 (644)
Q Consensus 112 ~~li~~~~~ 120 (644)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0064 Score=54.18 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYG 431 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 431 (644)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++... +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777788888899999999988876543332 35677777788888888888888888754 334 355666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777766554333221 112577888999999999886 4445555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00029 Score=51.59 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.1
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|++++|...++++++.+|+++.....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888877654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0053 Score=52.40 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=76.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCch
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-VK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (644)
..--+-..|++++|..+|+-+- .. -|..-|..|...+...++++.|...|..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998762 22 255678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006457 511 DVERTRSLMKN 521 (644)
Q Consensus 511 ~a~~~~~~m~~ 521 (644)
.|.+.|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00077 Score=48.75 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888876 3445 455788888888899999999999999999988864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.047 Score=56.13 Aligned_cols=202 Identities=18% Similarity=0.142 Sum_probs=110.0
Q ss_pred HHHHHHhhcCCCchHHHHHH--HHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCC
Q 006457 192 ASVLSACSRVTVNGVTEGAH--GFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGL 269 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~--~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (644)
...=++|.+..+....+-+. +.+.++|-.|+... +...++-.|++.+|-++|.+ +|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCc
Confidence 33444555555544443333 23445565565443 34456667777777777643 455
Q ss_pred hhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006457 270 AAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFN 349 (644)
Q Consensus 270 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (644)
...|+++|..|+ - | -..+-+...|..++-+.+.+.-.. ..-++.--.+...++...|+.++|..+
T Consensus 661 enRAlEmyTDlR-M---------F-D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 661 ENRALEMYTDLR-M---------F-DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred hhhHHHHHHHHH-H---------H-HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 566666666654 1 1 112223334444444333332211 111111112344555666777777654
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 350 QMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
...+|-.+-+.++-+++-. .+..+...+...+-+...+..|-++|..|-.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 3345555555555555432 2444555555556667777788888888822
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGMK-VKADF 459 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 459 (644)
...++++....|+|.+|..+-++.| ..||+
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 2467888888999999999988885 44443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0002 Score=43.65 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=30.9
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0065 Score=47.83 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCC-CCChhhHHHHHHHHHccc--------cHHHHHHHHHHHHHhCCCCchh
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDV-KCNAVTLSAVLLAIAHLG--------VLRLGKCIHDQVIKMDLEESVI 326 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~~~~~~~~ 326 (644)
+-...|..+...+++.....+|+.+. +.|+ .|+..+|+.++.+.++.. ++.....+++.|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 44556777777899999999999998 8898 999999999999987653 3556778889999999999999
Q ss_pred HHHHHHHHHHh
Q 006457 327 VGTSIIDMYCK 337 (644)
Q Consensus 327 ~~~~li~~~~~ 337 (644)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00081 Score=50.01 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=50.0
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+...++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788999999999999999999999999999999999999999999998887544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=51.07 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 006457 369 HCRAREALDLFYKMIKAGV-RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 446 (644)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677888888888777532 124444555677777888888888877762 2222 223344456777777888887
Q ss_pred HHHHHh
Q 006457 447 YDLIEG 452 (644)
Q Consensus 447 ~~~~~~ 452 (644)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.054 Score=53.56 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---NV----RSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.++-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888777653 11 111223344555 6888888888888665556677777776665
Q ss_pred HHH---------ccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C------CCC
Q 006457 400 ACS---------HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLK----EAYDLI---EG-M------KVK 456 (644)
Q Consensus 400 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~------~~~ 456 (644)
.|- .....++|...|.+. +.+.|+..+--.++..+...|.-. +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 123467788877766 556676544333444444444322 222222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|-..+.+++.++.-.||.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 456677889999999999999999999999998775
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.02 Score=50.73 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP--NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCM 433 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 433 (644)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++.... +.| ....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 456666777777788888888888877642222 124666777777788888888888877743 233 24445555
Q ss_pred HHHHh
Q 006457 434 VDLLG 438 (644)
Q Consensus 434 i~~~~ 438 (644)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0038 Score=60.42 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
++.+.|..+|+...+. +..+...|...+.-+.+.++.+.++.+|++......-.. ....|...++.=.+.|+++.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344455555554443 333444444445555555555555555555543211111 12355555555555555555555
Q ss_pred HHHhC
Q 006457 449 LIEGM 453 (644)
Q Consensus 449 ~~~~~ 453 (644)
+.+++
T Consensus 129 v~~R~ 133 (280)
T PF05843_consen 129 VEKRA 133 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.55 Score=50.77 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=142.5
Q ss_pred HhcCCchHHHHHHhhcCCC-CCcchHHHHHHHH--HcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADL--ARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
...+++..|.+..+++..+ ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4567888888888876544 443 566777766 5889999999999988765544 7889999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChH----HHHHHHhhCCCCCCCeecHHHHHHHHHhCC-Ch---------hH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDMYSKCGELS----DARKLFDEIPQRIRNIVSWTSMLTGYVQND-NA---------RE 159 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~ 159 (644)
.+++..... .|+......+..+|++.+++. .|.+++...+. +...+=+.++.+.+.- .. .-
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999875 466777778888898888765 46777776665 4444444455444431 11 22
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH-HhCCCCCccHHHHHHHHHHhcCC
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI-KRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
|.+.++.+.. ..|-.-+..-...-+......+..++|..++..-. ..-..-+...-+.-++.+.+.++
T Consensus 173 A~~m~~~~l~-----------~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 173 AEKMVQKLLE-----------KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred HHHHHHHHhc-----------cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 3344444441 22222222222233334556677888888774322 22223345555677788888888
Q ss_pred HHHHHHHHhcCCC
Q 006457 239 VDVSRKVFDGMIE 251 (644)
Q Consensus 239 ~~~A~~~~~~~~~ 251 (644)
+.+..++-.++..
T Consensus 242 w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 242 WQELFELSSRLLE 254 (932)
T ss_pred hHHHHHHHHHHHH
Confidence 8877766666533
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00088 Score=48.98 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555554331 1113444444445555555555555555444
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0036 Score=63.02 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHC--CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKL--SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSAL 114 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (644)
+......++..+....+.+++..++-+.+.. ....-+.|.+++++.|...|..+.+..++..=+..|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4556677777777777788888888877764 33344567778888888888888888888888888888888899989
Q ss_pred HHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhC
Q 006457 115 IDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQN 154 (644)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~ 154 (644)
|+.+.+.|++..|.+++..|... ..+..|+..-+.++.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 98888888888888888776554 33445555545555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0073 Score=60.89 Aligned_cols=120 Identities=7% Similarity=0.021 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCC
Q 006457 105 HRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASEN 180 (644)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 180 (644)
+.+......+++......+++.+..++-+.... ..-..|..++|+.|.+.|..+.++.+++.=.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~------------ 130 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL------------ 130 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh------------
Confidence 334445555566666666666677666655543 1123344577888888888888888777755
Q ss_pred CCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 181 SDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 181 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
..|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 67777777777777777777777777777777776666555555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.093 Score=45.44 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC------CCCCH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI-EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK------VKADF 459 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~~ 459 (644)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...+++.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 467777777888888999999999999988855 44 4467777778888888899999988888762 2334
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.--.+...+...|..+.|+..|+.++.-.|+ +......+..+.++|+.+++..-+..+.+
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344668888899999999999999998886 46667777888999999888776666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.061 Score=52.30 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHHhc-CCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHH
Q 006457 332 IDMYCKC-GQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-----PNYI-TFV 395 (644)
Q Consensus 332 i~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~ 395 (644)
...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. .+.. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 555555555554431 11 123445566677777777777777776653221 1221 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhh-cCCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHE-FNIEPG--VEHYGCMVDLLGR--AGKLKEAYDLIEGMK 454 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 454 (644)
..+-++...|++..|...|+..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3333555567777777777776321 122222 3344555666543 335666666666663
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=60.58 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHH
Q 006457 386 GVRPNYITFVSVLSACSHA-----GLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRA--------GKLKEAYDLIE 451 (644)
Q Consensus 386 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 451 (644)
+.+.|...|...+.+.... +..+.|..+|+++.+ ..|+ ...|..+..+|... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3566778888888876543 237789999999854 5776 44555544444322 22344555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 452 GM---K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 452 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+. + ...+...+..+.......|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 42 1 2335567877777777789999999999999999995 7899999999999999999999999887544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.01 Score=52.98 Aligned_cols=97 Identities=13% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 006457 345 RKAFNQM--KEKNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA------------- 404 (644)
Q Consensus 345 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 404 (644)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 456777777777777643 66777777888899999999999999999877542
Q ss_pred ---CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 405 ---GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 405 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
.+-+-|++++++| +++|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346689999999 557999999999999999987765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=48.66 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=112.6
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHH---cCCCCCC-hhhHHHHHHHHHccccHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVK---STDVKCN-AVTLSAVLLAIAHLGVLRLGKCIH 313 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~ 313 (644)
++++|..+|++ ....|-..|++++|.+.|.+... ..+-+.+ ...|......+ +..+++.|...
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~- 96 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC- 96 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH-
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH-
Confidence 56666655543 55667777788877777766531 0110000 01111111112 12234444333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCC
Q 006457 314 DQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMH-CRAREALDLFYKMIKA----GVR 388 (644)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~ 388 (644)
+...++.|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .
T Consensus 97 --------------~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 97 --------------YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp --------------HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred --------------HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 34456678888888888776554 56677777 8999999999887642 3 2
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC----CCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---
Q 006457 389 PN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI----EPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA--- 457 (644)
Q Consensus 389 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--- 457 (644)
+. ..++..+...+.+.|++++|.++|+++....-- ..+. ..+-..+-.+...|++..|.+.+++.. ..|
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 21 235666777788889999999999888653211 1122 123333445666788888888888752 223
Q ss_pred C---HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 458 D---FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 458 ~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
+ ......|+.++. .||.+.-..+....-.+.+-+
T Consensus 231 ~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp TSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTSS---
T ss_pred CcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcccCccH
Confidence 1 224455556553 344443333333333333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.19 Score=47.46 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---CHhH---HHHHHHHHHHCCChhHHHHHHHHhHHc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIEK---DAVT---WNSIIAIYAQNGLAAEALDVFDQMVKS 283 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 283 (644)
....+.+.|++++|.+.|+.+... +... .-.++.+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455677888888888777332 1122 233556677778888888888777633
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.19 Score=43.63 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=52.0
Q ss_pred CCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHH
Q 006457 286 VKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWT 360 (644)
Q Consensus 286 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 360 (644)
..|+...-..+..+....|+..+|...+.+...--+..|..+.-.+.++....+++..|...++.+.+- ...+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 344444444555555556666666666655555444455555555555555555655555555554321 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.+...|...|++.+|...|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344455555555555555555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.89 Score=48.24 Aligned_cols=332 Identities=12% Similarity=0.032 Sum_probs=167.2
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---ChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCG---ELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
|.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+.+..+-+++.......++|..+.+...+.|+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 444455566666666665553211111 455566666665542 2222333333333212355677777777777888
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
++-|..+++.=... ...-.+-.+..-+...+.-+...|+.+...+++-++.+.- +...+ ....
T Consensus 523 ~~LA~kLle~E~~~--------~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l 585 (829)
T KOG2280|consen 523 FELARKLLELEPRS--------GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTL 585 (829)
T ss_pred HHHHHHHHhcCCCc--------cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHH
Confidence 88887777652200 0000111244455666677777777777666665554321 00000 1111
Q ss_pred CCHHHHHHHHhcCCC-CCHhHHHHHHHHHHHCCChhHHHHHHH--HhHH---cCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 237 GHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQNGLAAEALDVFD--QMVK---STDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 237 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~---~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
.+...|..+|....+ .|..+ +..+-+.++-.+++.-|. .... ..+..|+ ......+|++........
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 122333444433321 11111 011112222222222211 1000 0122222 223334444433311111
Q ss_pred ----------HHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 311 ----------CIHDQVI-KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 311 ----------~i~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.+.+.+. +.|.....-+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111111 12222222333444555666788888888888888888888888888888888887766655
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
+.+. .+.-|.....+|.+.|+.++|.+++.+. .|.. -.+.+|.+.|++.+|.++--+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---~~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---GGLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---CChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 4432 1455666788888888888888887766 1221 467788888888888776443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0026 Score=46.63 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHhhccCC
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHK-NVDLGEIAAKKLFELEP 490 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 490 (644)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777778888888888888888765 3344 4557778888888888 68888888888888877
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.038 Score=45.23 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=65.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHh
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLG 438 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 438 (644)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++....++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999998886654 34667778888899999999999998866432111 2223333455677
Q ss_pred hcCCHHHHHHHHHh
Q 006457 439 RAGKLKEAYDLIEG 452 (644)
Q Consensus 439 ~~g~~~~A~~~~~~ 452 (644)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0066 Score=54.12 Aligned_cols=100 Identities=10% Similarity=0.121 Sum_probs=77.2
Q ss_pred hHHHHHHhhc--CCCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhcc---------
Q 006457 23 TNLTTLFNKY--VDKNNVFSWNSVIADLARG-----GDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSAL--------- 86 (644)
Q Consensus 23 ~~A~~~f~~~--~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 86 (644)
..-...|+.. ..+ |-.+|..+|..|.+. |..+-....+..|.+.|+.-|..+|+.||+.+=+.
T Consensus 31 ~~~~~~f~~~~~~~k-~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 31 APHEELFERAPGQAK-DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred cchHHHHHHHhhccc-cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 3345666665 345 778899999988744 66777778889999999999999999999887442
Q ss_pred -------CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 006457 87 -------HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE 123 (644)
Q Consensus 87 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (644)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1235678888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=43.61 Aligned_cols=92 Identities=8% Similarity=-0.066 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
.+...+...|++++|.++|+-+.. | +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344455678888888888886653 3 55677778888888888888888888887754 3456677777778888888
Q ss_pred HHHHHHHHHHHhhhcC
Q 006457 407 VQEGWHWLNTMGHEFN 422 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~ 422 (644)
.+.|++.|+..+.-.+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887766443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.25 Score=51.08 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred cHHHHHHHHhccCCcHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 006457 75 TFPCAIKSCSALHDLHSGK--QAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIP 135 (644)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (644)
.++..=++|.+.++..--+ .-++.+.+.|-.|+... +...++-.|.+.+|.++|.+-.
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 3444455565555544322 23455666676676543 3344556788888888887643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=57.11 Aligned_cols=126 Identities=12% Similarity=0.026 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH---hhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTM---GHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KV-KADFVV 461 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~~ 461 (644)
|..|.+.|--.|+++.|+..++.= .+++|-.. ....+..|...+.-.|+++.|.+.+... +. .-...+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 344444444455666666554421 12333222 2344555566666666666666655432 11 112234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcc----C--CCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFEL----E--PNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.-+|.+.|....+++.|+..+.+-+.+ + .....++..|+++|...|.-+.|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445556665556666666655544332 1 223345666666666666666666555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=56.28 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLS 500 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 500 (644)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|+++++..|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666654 222322 244455666666677777777777776666553 33444456
Q ss_pred HHHhhcCCchHHHHHHHHHhh
Q 006457 501 NIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0063 Score=60.78 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666666666666653 455553 24666666666666666666666666665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.2 Score=47.40 Aligned_cols=322 Identities=10% Similarity=0.028 Sum_probs=179.1
Q ss_pred CCCCCccCCHhhHHH-----HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC---HHHHHHHHhcCC
Q 006457 179 ENSDNVFVDSVAIAS-----VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH---VDVSRKVFDGMI 250 (644)
Q Consensus 179 ~~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 250 (644)
+...|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 336777777666654 4555566666777777665542211111 4566666666666533 233444444454
Q ss_pred C--CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCC----CCChhhHHHHHHHHHccccHHHHHHHHHHHHHh-----
Q 006457 251 E--KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDV----KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----- 319 (644)
Q Consensus 251 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----- 319 (644)
. ...++|..+..---..|+.+-|..+++.=. ..+. -.+..-+...+.-+...|+.+....++-.+.+.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4 456778888877778888888887765432 1111 012223445566666777777766666555432
Q ss_pred ------CCCCchhHHHHHHHH--------HHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCC---HHHH
Q 006457 320 ------DLEESVIVGTSIIDM--------YCKCGQVDLARKAFNQMK-------EKNVRSWTAMIAGYGMHCR---AREA 375 (644)
Q Consensus 320 ------~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A 375 (644)
..+.....|.-++.- +-..++-..+...|..-. +.-.........++++... ..+|
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 111122222222210 011111112211111000 1111122233344444332 1111
Q ss_pred -------HHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 006457 376 -------LDLFYKMI-KAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 376 -------~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (644)
+.+.+.+. +.|..-...|.+--+.-+...|+..+|.++-... . -||...|-.-+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHH
Confidence 12222222 1233334445556666777888888888876655 2 378888888888999999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 448 DLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 448 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
++-+.++ .++-|.-+..+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 736 kfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 736 KFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 8777663 3566777888999999999988887665322 2567788899999988876433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.73 Score=44.98 Aligned_cols=240 Identities=18% Similarity=0.181 Sum_probs=156.3
Q ss_pred HHCCChhHHHHHHHHhHHcCCCCCChhh----HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 265 AQNGLAAEALDVFDQMVKSTDVKCNAVT----LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 265 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
.-.|+++.|.+-|+.|. . |..| +..+.-.-.+.|+.+.|..+-+..-..- +.-.....+.+...+..|+
T Consensus 131 l~eG~~~~Ar~kfeAMl-~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 131 LLEGDYEDARKKFEAML-D-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGD 203 (531)
T ss_pred HhcCchHHHHHHHHHHh-c-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCC
Confidence 34677888888888886 2 2222 2222233346677777777776665433 2234456778888888999
Q ss_pred HHHHHHHHHhcC-----CCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHH
Q 006457 341 VDLARKAFNQMK-----EKNVR--SWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYIT-FVSVLSACSHAGLVQE 409 (644)
Q Consensus 341 ~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 409 (644)
++.|+++.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||.+- -.....++.+.|++.+
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhh
Confidence 999999888654 34442 22233332221 2345666666665555 5677553 3344568889999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE--AYD--LIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
+-.+++.+- ...|.+..+...+ +.|.|+... ... -+..| +| +..+..++..+-...|++..|..-.+.
T Consensus 282 g~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 282 GSKILETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred hhhHHHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 999999994 4567666655443 456665322 111 23333 45 455666777888899999999999999
Q ss_pred hhccCCCCchhHHHHHHHHhhc-CCchHHHHHHHHHhh
Q 006457 485 LFELEPNNCGYHVLLSNIYANA-GRWEDVERTRSLMKN 521 (644)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 521 (644)
+....|.. ..|.+|+++-... |+-.++...+-+..+
T Consensus 355 a~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 355 AAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 99999985 7888888886544 988888887766654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.93 Score=45.26 Aligned_cols=420 Identities=10% Similarity=0.064 Sum_probs=217.1
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHH--HHhCCC
Q 006457 85 ALHDLHSGKQAHQQAFIFGFHRD------VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTG--YVQNDN 156 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~g~ 156 (644)
+.+++.++..+|..+.+.. ..+ ....+.++++|.. ++++.....+....+..| ...|-.+..+ +.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 3455666666666555432 111 1233456666653 345555444444443323 3334444433 235667
Q ss_pred hhHHHHHHHHhHhhhhccCCCCC--CCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC----CCCCccHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASE--NSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRG----FDSEVGVGNTLI 230 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~--~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li 230 (644)
+.+|++.+.....+-.......+ +-...-+|-.-=......+...|.+.+|+.++..++..= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 77777776665422000000000 000011122222445666788999999999988887654 347889999988
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCC-------------------------------hhHHHHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGL-------------------------------AAEALDVFDQ 279 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------------------------------~~~A~~~~~~ 279 (644)
-++++.--++-- +.+...=..-|--||..|.+.=. ..--++++..
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 888765322211 11111111122233333322110 0111111111
Q ss_pred hHHcCCCCCChh-hHHHHHHHHHccccHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 006457 280 MVKSTDVKCNAV-TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE----SVIVGTSIIDMYCKCGQVDLARKAFNQMK-- 352 (644)
Q Consensus 280 m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 352 (644)
-. ..-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.
T Consensus 251 We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 12 334555533 22333333333 5666666665555443211 23456667777778888888888777554
Q ss_pred CCChh-------hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH---HHHHccCC-HHHHHHHHHH
Q 006457 353 EKNVR-------SWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFV-SVL---SACSHAGL-VQEGWHWLNT 416 (644)
Q Consensus 353 ~~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll---~a~~~~g~-~~~a~~~~~~ 416 (644)
+|+.. +-.++-+..+. .-+...=+.+|+...... .|..-.. .++ .-+-+.|. -++|+++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34322 11222222221 123334456666666543 3333221 222 23444555 7788888888
Q ss_pred HhhhcCCCC-ChhHHHHHH----HHHhhc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHH
Q 006457 417 MGHEFNIEP-GVEHYGCMV----DLLGRA---G---KLKEAYDLIEGMKVKA----DFVVWGSLLGA--CRIHKNVDLGE 479 (644)
Q Consensus 417 ~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~ 479 (644)
+.+ +.| |...-|.+. ..|..+ . ++-+-..++++.++.| +...-|.|..| +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 854 333 333222221 122211 1 1222334455556555 33455555544 36899999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-...-+.++.| ++.+|.+++-.+....++++|..+++.+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999 68999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0037 Score=40.88 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999988877764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.14 Score=47.03 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CCH--------hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIE--KDA--------VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
+++|+..|.-..-+++-...|+.-.. ..+ ...+.++..+...|.+.-.+..+++.. +...+.+......
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHH
Confidence 56677776666666666666655422 222 334567777777888888899999988 5555667777888
Q ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHH
Q 006457 296 VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI-----IDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYG 367 (644)
Q Consensus 296 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 367 (644)
+.+.-.+.|+.+.|...++...+..-..+...++.+ ...|.-.+++..|...|++++.. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 888888899999999999988775434444444433 33456677888888888887753 4555555444555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSV 397 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 397 (644)
-.|+..+|++..+.|... .|...+-.++
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 568889999999999874 5655544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.078 Score=43.43 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC--hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN--AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE--ESVIVGTSIIDMY 335 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~~ 335 (644)
+..++-..|+.++|+.+|++.. ..|.... ...+..+.+++...|++++|..+++........ .+..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4455666777777777777776 4554443 224444555566666666666666665543211 0111111222234
Q ss_pred HhcCCHHHHHHHHHhc
Q 006457 336 CKCGQVDLARKAFNQM 351 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~ 351 (644)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4555555555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.28 Score=45.08 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=129.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH-Hcccc-HH-HHHHHHHHHHH-hCCCCchhHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI-AHLGV-LR-LGKCIHDQVIK-MDLEESVIVG 328 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~-~~~~~-~~-~a~~i~~~~~~-~~~~~~~~~~ 328 (644)
....|+.-+..+++....++|..-+.... .. -.||-. |...-..+ .+.|. +. ..+.+|.++.+ .|. -+
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~-~l-D~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pq 139 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFG-NL-DQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQ 139 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhc-cC-CCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cH
Confidence 34456666777788777777765555443 11 112210 00000000 01121 11 22334444433 222 24
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEK--N--------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
++|+..|.-..-+++-...|+.-..| . ...-+.++..+.-.|.+.-.+.++.+.++...+-++.....|.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 55666665554555555555443322 1 2234566667777788888888888888866556777778888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcC----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFN----IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKV--KADFVVWGSLLGACRIH 472 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~ 472 (644)
+.-.+.|+.+.|..+|+...+..+ +.-...+.......|.-+.++.+|...+.+.+. ..|++..|.-.-...-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888888999999999987754322 222222233333445556677777777776642 12344444444444455
Q ss_pred CChhHHHHHHHHhhccCCCCch
Q 006457 473 KNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
|+...|.+..+.+.+..|....
T Consensus 300 g~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHhccCCccch
Confidence 6777777777777777776443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.94 Score=42.74 Aligned_cols=191 Identities=11% Similarity=0.065 Sum_probs=94.9
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh-hhH---HHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 252 KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA-VTL---SAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~---~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
.+...+-.....+...|++++|++.|+++. . .-|+. .+. -.+..++-+.++++.|...++..++........-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~-~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALD-N--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 344445455666788999999999999997 2 23333 222 3455667788888888888888877543222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc---C--CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQM---K--EKNV-------RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFV 395 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~---~--~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 395 (644)
+...+.+.+.. ......|... . .+|. .++..++.-|-...-..+|...+..+... .-..-+
T Consensus 107 ~a~Y~~g~~~~---~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~- 179 (243)
T PRK10866 107 YVLYMRGLTNM---ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL- 179 (243)
T ss_pred HHHHHHHHhhh---hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-
Confidence 22222222210 0000011111 0 0111 12223333333333333443333332211 001111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
.+..-|.+.|.+..|..-++.+++++.-.| ..+....++.+|...|..++|.+....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344456666677667666666665543333 244555566666667776666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=55.20 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCE
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGK 538 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 538 (644)
..++..|..++.+.+.+..|++...+.++++|+|.-+..--+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3466677788889999999999999999999999999999999999999999999999998752
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 006457 539 VHAFLVGDKEHPQHEKIYEYLEELNVKLQE 568 (644)
Q Consensus 539 ~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~ 568 (644)
.|.+..|..++..+..++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 35566777777777777664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.14 Score=49.95 Aligned_cols=153 Identities=9% Similarity=-0.016 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhh---hcCC-CCChh
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKM----IKAGVR-PNYITFVSVLSACSHAGLVQEGWHWLNTMGH---EFNI-EPGVE 428 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~ 428 (644)
.|..|...|.-.|+++.|+..-+.- ++-|-+ .....+..+.+++.-.|+++.|.+.++.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666677888887655432 223322 2334677788888888888888888776532 1111 11244
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCC-Cch
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPN-NCG 494 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~ 494 (644)
..-+|...|.-...+++|+.++.+- . ..-....+-+|..++...|..+.|....++.+++ +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 5556777787778888888877653 1 1123446667888888888888888888777653 222 233
Q ss_pred hHHHHHHHHhhcCCch
Q 006457 495 YHVLLSNIYANAGRWE 510 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~ 510 (644)
....|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455555554555433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=42.94 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
..|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677888888888888876 3444 45577777888889999999999999999999987655443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.083 Score=45.51 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777888999999999999999999999999999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.1 Score=49.73 Aligned_cols=100 Identities=6% Similarity=-0.037 Sum_probs=60.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLG 467 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 467 (644)
|...+.-..+.|++++|...|+.+.+.+.-.+ ....+--+...|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445667777776766655321111 0234556667777777777777777665 11122 334445566
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66778888888888888888888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2.6 Score=44.49 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=47.9
Q ss_pred CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH-----
Q 006457 287 KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTA----- 361 (644)
Q Consensus 287 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 361 (644)
+-|+...-.+..++.+.|.-++|.+.|-+ .+. | .+.++.+...+++.+|.++-++..-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34555555666677777777766655432 121 1 234556666677777777766655444433211
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHH
Q 006457 362 ---------MIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 362 ---------li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-|..+.+.|+.-+|-+++.+|.
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1333445555555566666664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.01 Score=44.73 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcc----C---CCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFEL----E---PNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+++.+...+...|++++|+..+++++++ . |.-..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666665543 1 1224566677777777777777777776653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.092 Score=43.46 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTM--------------GHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--- 453 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 453 (644)
..++..++.++++.|+++....+++.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445555666666666666555555443 011223455566666666666666666666665543
Q ss_pred -CCCCCHHHHHHHHHHH
Q 006457 454 -KVKADFVVWGSLLGAC 469 (644)
Q Consensus 454 -~~~p~~~~~~~ll~~~ 469 (644)
+++-+...|..|+.=+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333455666665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.11 Score=43.14 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
..++.++|-++++.|+++....+.+..=..|+. +-...+. --......|+..++.+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 455667777777777777777766554221111 0000010 111234679999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|++..|.++.+...+.++++.+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888999988887443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.012 Score=44.35 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444555555444444433 1 1122 33555556666666666666666666554
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.9 Score=37.15 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=85.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.-.|..++..++..+.... .+..-++.++.-...+-+-+-..+.++.+-+- .| ...+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHH
Confidence 3457777778888777653 23444555554444444445555566655332 22 2346666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 447 YDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
...+-.++. +..-...-+......|.-+.-.+++..+.+-+..+|....-++++|.+.|...++-+++++.-++|++
T Consensus 76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 666666542 33344566778888999999999999988766667889999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.16 Score=43.78 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhcCCCCChhH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG----HEFNIEPGVEH 429 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 429 (644)
..++..+...|++++|+.+.+++.... +-|...+..+|.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334455555666666666666666542 3355566666666666666666666665543 23466665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.87 Score=44.88 Aligned_cols=276 Identities=14% Similarity=0.065 Sum_probs=156.9
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHh--HHHHHHHHHHHCCChhH
Q 006457 196 SACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-KDAV--TWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~ 272 (644)
.++.+...+..+...+..+++.... +..-|..-...|...|++++|.--.+.-.+ .|-. ...-.-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 4455556677777777777776533 344455555556666777766654433322 2222 23333444444455555
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL-EESVIVGTSI-IDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 350 (644)
|.+.|+.-. .+ ....+...++.+..... +|.-..+..| ...+.-.|+.++|.+.-..
T Consensus 136 A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 136 AEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 555444211 01 01111122222222221 1222333222 2345567888888877766
Q ss_pred cCCCChh-hHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------HHHHccCCHHHHHHHH
Q 006457 351 MKEKNVR-SWTAMIA--GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL-------------SACSHAGLVQEGWHWL 414 (644)
Q Consensus 351 ~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------------~a~~~~g~~~~a~~~~ 414 (644)
+.+-|.. .+...+. ++.-.++.+.|...|++.+. ..|+...-.+.- +-..+.|.+..|.+.+
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 6654433 2222333 34456788899999998877 456655433322 2235779999999999
Q ss_pred HHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCChhHHHHHHHHhh
Q 006457 415 NTMGHEFNIEP-----GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFV-VWGSLL--GACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 415 ~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll--~~~~~~g~~~~a~~~~~~~~ 486 (644)
...+ ++.| +...|.....+..+.|++++|+.--+..- +-|.. ++.-+. .++...+++++|.+-++++.
T Consensus 273 teal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 273 TEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8873 4555 46667777788889999999998887662 22333 333333 44456788999999999998
Q ss_pred ccCCCCchhHHHHH
Q 006457 487 ELEPNNCGYHVLLS 500 (644)
Q Consensus 487 ~~~p~~~~~~~~l~ 500 (644)
+...+ ......|.
T Consensus 349 q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 349 QLEKD-CEIRRTLR 361 (486)
T ss_pred hhccc-cchHHHHH
Confidence 87755 44444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.3 Score=41.43 Aligned_cols=83 Identities=8% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.|..+|-.|++.|..++..++.++++++|..+ | =..+|..-+++-....+++....+|.+.....+ +...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 345567777888888888888888888887654 2 223577777766666777777777777766433 344555555
Q ss_pred HHHhccC
Q 006457 81 KSCSALH 87 (644)
Q Consensus 81 ~~~~~~~ 87 (644)
.-..+.+
T Consensus 117 ~YIRr~n 123 (660)
T COG5107 117 EYIRRVN 123 (660)
T ss_pred HHHHhhC
Confidence 5444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.16 Score=47.07 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=83.5
Q ss_pred HHHHHHhcC--CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 006457 344 ARKAFNQMK--EKNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG----------- 405 (644)
Q Consensus 344 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 405 (644)
.+..|.... ++|-.+|-+++..+..+ +..+=.-..++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 67888888888887654 556667777889999999999999999998875432
Q ss_pred -----CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 006457 406 -----LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL-KEAYDLIEGM 453 (644)
Q Consensus 406 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 453 (644)
.-+-++.+++.| +.+|+.||.++-..|+.++++.|.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234588999999 6689999999999999999998864 3344444344
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.35 Score=45.75 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
|...|-.|...|...|+++.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344454455555555555555555554444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.45 Score=45.88 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCC--C--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIE--P--GVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKADFVVW--- 462 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~--- 462 (644)
+..|....+.++++++.|+...+-..-. | ...++..|...|++..++++|.-+..+. +++.=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555566666665553311111 1 1344555666666666665554443332 211101111
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 463 --GSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 463 --~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
-.|.-+++..|....|.+..+++.++- |-.......++++|...|+.|.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223345555666666666655554431 11222334556666666666555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.6 Score=38.90 Aligned_cols=195 Identities=17% Similarity=0.101 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
...+......+...+.+..+...+..... .....+..+...+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445555556666666666655555431 2334455555555566666666666666665332221 11111222
Q ss_pred -HHHccCCHHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 006457 400 -ACSHAGLVQEGWHWLNTMGHEFNI--EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD--FVVWGSLLGACRIHK 473 (644)
Q Consensus 400 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 473 (644)
++...|+++.+...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776622 111 112333334444456667777777776665 22233 456666667777777
Q ss_pred ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 474 NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+.+.+...+....+..|.....+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776555566666666666667777777766654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.7 Score=39.74 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHh
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLG 438 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 438 (644)
..++.-|-......+|...+..+... .-.. -..+..-|.+.|.+..|..-++.+++++.-.+. ......|+.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444454455555555544444321 0111 112455567777777777777777665432222 344556667777
Q ss_pred hcCCHHHH
Q 006457 439 RAGKLKEA 446 (644)
Q Consensus 439 ~~g~~~~A 446 (644)
+.|..+.|
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=49.28 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=94.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777888887777776541 10 111111122211111 113356667778889999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH-HHHHHHH
Q 006457 443 LKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV-ERTRSLM 519 (644)
Q Consensus 443 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 519 (644)
+.+|++..++. ..+ +|+-..-.-..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887765 333 45656666778999999999999999999999999998888888877776665555 7888888
Q ss_pred hhC
Q 006457 520 KNR 522 (644)
Q Consensus 520 ~~~ 522 (644)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=51.66 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV----EHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+...++.+..+|...|++++|+..|+..++ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566666666666666666666666532 44542 23556666666666666666666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=6.5 Score=42.34 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhH
Q 006457 108 VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..++...|+.+.-.|++++|-...-.|.. .+..-|.-.+..+...++...
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccccccch
Confidence 34667777888888888888888777777 666677766666666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.96 E-value=5.6 Score=41.55 Aligned_cols=412 Identities=11% Similarity=0.066 Sum_probs=216.8
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC-AIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALI 115 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (644)
+-..|+.+|.---+....+.+..++..+... -|..+-|-. ....=.+.|..+.+.++|+..+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456777776555555556666677766642 344433222 22222456777888888888776 4566666776666
Q ss_pred HHHH-hCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhh
Q 006457 116 DMYS-KCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVA 190 (644)
Q Consensus 116 ~~~~-~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t 190 (644)
..+. ..|+.+...+.|+..... ..+...|...|.--..++++.....+|++.+. ... .-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile------------iP~----~~ 184 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE------------IPL----HQ 184 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh------------hhh----hH
Confidence 5544 346777777777765543 33566688888877788888888888888762 111 11
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHHHHH
Q 006457 191 IASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--------KDAVTWNSIIA 262 (644)
Q Consensus 191 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 262 (644)
|+....-+ ....+.. ++. . .-..+++.++=..... +....+..-+.
T Consensus 185 ~~~~f~~f-------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~ 238 (577)
T KOG1258|consen 185 LNRHFDRF-------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVK 238 (577)
T ss_pred hHHHHHHH-------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHh
Confidence 11111111 1111100 000 0 0000111100000000 00001100000
Q ss_pred HHH-HCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCchhHHHHHHHH
Q 006457 263 IYA-QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-------LEESVIVGTSIIDM 334 (644)
Q Consensus 263 ~~~-~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-------~~~~~~~~~~li~~ 334 (644)
--. ..+..+++.....+.. ...-..+-..-.....+..++.-++.. .+++..+|...++-
T Consensus 239 ~~~~~s~~l~~~~~~l~~~~------------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 239 DSTDPSKSLTEEKTILKRIV------------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred hccCccchhhHHHHHHHHHH------------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 000 0000111111110000 000001111111222222333333221 12345677777888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006457 335 YCKCGQVDLARKAFNQMKEKNV---RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGW 411 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 411 (644)
-.+.|+.+.+.-+|++..-|-. ..|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 8888999999989888775421 2344444434444888888877777665433333333322333356678999999
Q ss_pred HHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHHhcCChhHHHHH
Q 006457 412 HWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAY---DLIEGM-KVKADFVVWGSLL-----GACRIHKNVDLGEIA 481 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll-----~~~~~~g~~~~a~~~ 481 (644)
.+++.+..+ . |+ +..-..-+....+.|..+.+. +++... +.+-+..+...+. --+...++.+.|..+
T Consensus 387 ~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 387 VILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999765 3 55 333344466777889988888 444433 2222333333332 223456789999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
+.++.+..|++...|..+.+.....+.
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 999999999999999999888766653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.41 Score=48.37 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
|+.....+..+....++.+.|...|+++..++|+.+..+...+....-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444445555566666666666666666666666666666666666666665555
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.91 E-value=4.7 Score=40.44 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH-HHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAG-VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY-GCM 433 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 433 (644)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3457777777777777888999999999888 6678888888887655 57788888888865442 3444443 456
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 434 VDLLGRAGKLKEAYDLIEGM--KVKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+.-+.+-++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.++.|...
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 67778889989999999855 12223 45888888888889999988888888888888753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.16 Score=47.24 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVL 498 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 498 (644)
.|+.-++. .+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34443333 2455566666665544 133444444 6666666677777777766666655443 455666
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|+.+..+.|+-++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666677777777777777766543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=4.8 Score=39.59 Aligned_cols=310 Identities=15% Similarity=0.080 Sum_probs=185.9
Q ss_pred hHHHHHHHhhCCCCCCCeecHHHHHHHHHh--CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh--
Q 006457 124 LSDARKLFDEIPQRIRNIVSWTSMLTGYVQ--NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS-- 199 (644)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~-- 199 (644)
...+.+.|..-+. -..|..|-.++.- .|+-..|.++-.+- ..-+.-|...+..+|.+-.
T Consensus 69 P~t~~Ryfr~rKR----drgyqALStGliAagAGda~lARkmt~~~-------------~~llssDqepLIhlLeAQaal 131 (531)
T COG3898 69 PYTARRYFRERKR----DRGYQALSTGLIAAGAGDASLARKMTARA-------------SKLLSSDQEPLIHLLEAQAAL 131 (531)
T ss_pred cHHHHHHHHHHHh----hhHHHHHhhhhhhhccCchHHHHHHHHHH-------------HhhhhccchHHHHHHHHHHHH
Confidence 3445555554432 2345566555554 46666666665553 2234556666777777644
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 274 (644)
-.|+.+.+++-|+.|.. .|.... ...|.----+.|..+.|...-++.-. | -...|.+.+...+..|+++.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 45899999999998864 222211 12233333467888888877776633 2 3467888999999999999999
Q ss_pred HHHHHhHHcCCCCCChhh--HHHHHHHHHc---cccHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHH
Q 006457 275 DVFDQMVKSTDVKCNAVT--LSAVLLAIAH---LGVLRLGKCIHDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLARKAF 348 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t--~~~ll~a~~~---~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 348 (644)
++++.-....-+.++..- -..++.+-+. ..+...|+..-.+..+ +.|+..- --.-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 999887755556666532 2223332211 1245555555555554 3344322 223456778889998888888
Q ss_pred HhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 349 NQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIK-AGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 349 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
+.+-+ |....| .+..+++.|+ .++.-+++..+ ..++|| ......+..+-...|++..|..--+.. ....
T Consensus 287 E~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa---~r~~ 359 (531)
T COG3898 287 ETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA---AREA 359 (531)
T ss_pred HHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH---hhhC
Confidence 87754 333333 2233444554 44444444332 124554 456667777778888888877766665 2467
Q ss_pred CChhHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHH
Q 006457 425 PGVEHYGCMVDLLGR-AGKLKEAYDLIEGMKVKADFVVW 462 (644)
Q Consensus 425 p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~ 462 (644)
|....|..|.+.-.. .|+-.++...+.+.-..|....|
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888888888776654 48888888887765333333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.3 Score=43.30 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKV--KAD--FVVWGSLLGA 468 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~ll~~ 468 (644)
+-..+..++-+.|+.++|.+.|.++.+++.......+...|+..|...+.+.++..++.+... -|. ...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788999999999999987644333455777899999999999999999988741 233 3466665544
Q ss_pred HHhcCCh---------------hHHHHHHHHhhccCCCCc
Q 006457 469 CRIHKNV---------------DLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 469 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 493 (644)
.+..++. ..|.++..++.+.+|..+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4444331 235678888888887754
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.28 Score=39.81 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-CCC---chhHHHHHHHHhhcCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE-PNN---CGYHVLLSNIYANAGR 508 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 508 (644)
-+++..|+++.|++.|.+. .. +.+...||.-..+++-+|+.++|+.-+++++++. |.. ...|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999988876 22 2367788999999999999999999999999875 332 2457777888999999
Q ss_pred chHHHHHHHHHhhCCC
Q 006457 509 WEDVERTRSLMKNRRL 524 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~~ 524 (644)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.2 Score=40.43 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=84.5
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGS---LLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 476 (644)
.....|+..++...|+..... .+-+...--.|+..|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888887542 222356666788888899999999999998875443333333 223333333333
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3322 334456789999999999999999999999999888776554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.9 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=25.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~ 479 (644)
+...|.+.|.+..|..-++.+ ..-|+ ...+..++.++...|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 556677777777776666554 11122 224555667777777666443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.19 Score=46.52 Aligned_cols=111 Identities=9% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHHHhhcC--CCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccC----------
Q 006457 25 LTTLFNKYV--DKNNVFSWNSVIADLARG-----GDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH---------- 87 (644)
Q Consensus 25 A~~~f~~~~--~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------- 87 (644)
.+..|...+ .+ |-.+|-+.+..+... +..+-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345566665 45 777888888877543 456666777888999999999999999998775432
Q ss_pred ------CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh-HHHHHHHhhCCC
Q 006457 88 ------DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL-SDARKLFDEIPQ 136 (644)
Q Consensus 88 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 136 (644)
.-.-+..++++|...|+.||..+-..|++++.+.+-. .+..++.-.|+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2234677888888888888888888888888776643 344444444543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.27 E-value=6.3 Score=39.39 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---C----HhHHHHHHHHHHH---CCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIEK---D----AVTWNSIIAIYAQ---NGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
.-.|+-.|....+++...++.+.+... + ...--...-++.+ .|+.++|++++..+. .....++..|+..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHH
Confidence 334555688889999999999988553 1 1222233445566 789999999998865 4556677778777
Q ss_pred HHHHH
Q 006457 296 VLLAI 300 (644)
Q Consensus 296 ll~a~ 300 (644)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.071 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.85 Score=38.29 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 436 LLGRAGKLKEAYDLIEGM----KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
...+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 344677888888777776 2222 223445577888888888888888888888887765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.21 E-value=9.9 Score=43.12 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.4
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 006457 436 LLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~ 453 (644)
+|..+|+|.+|+.+-.++
T Consensus 974 a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHhccHHHHHHHHHhh
Confidence 344444444444444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.3 Score=43.14 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh
Q 006457 372 AREALDLFYKMIK-AGVRPNYI-TFVSVLSACS---------HAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR 439 (644)
Q Consensus 372 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 439 (644)
.+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.++-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4567777887771 22455533 3333222221 12234556666665533 444 57777777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH--HHHHHHhhcCCchHHHHH
Q 006457 440 AGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV--LLSNIYANAGRWEDVERT 515 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~ 515 (644)
.|+++.|...|++. ...||. .+|......+...|+.++|.+.+++.++++|.....-+ ..+++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999987 456653 46666667777899999999999999999997644333 3334565554 5666666
Q ss_pred H
Q 006457 516 R 516 (644)
Q Consensus 516 ~ 516 (644)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 5
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.7 Score=41.69 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HH--HHHHHHHHccCCHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TF--VSVLSACSHAGLVQEG 410 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~--~~ll~a~~~~g~~~~a 410 (644)
.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++..-. ..||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 25555555555566666655555555555432 122221 11 1122233445566666
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.+.-++.. .+.| |.-...++...+...|+..++.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555442 2333 3334444555555566666666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.91 E-value=1 Score=46.43 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHK 473 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 473 (644)
...++.-+.+.|.++.|+++-..-.. -.++..++|+++.|.++.++.. +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 45555556666666666555332211 1344456666666666655543 5556666666666666
Q ss_pred ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 474 NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+++.|++.+++.- -+..|+-+|...|+-+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6666666666642 24445555666666555555554444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=5.2 Score=36.77 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=116.5
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHH-HH
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKM-DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIA-GY 366 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~ 366 (644)
.+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+..... ++ ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333344444444444444444444331 2223333444455555555566666666665553 11 122222333 67
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC
Q 006457 367 GMHCRAREALDLFYKMIKAGVRP----NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG 441 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 441 (644)
...|+++.|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcc
Confidence 778888888888888755 233 233344444446677888888888888754 2223 3667777788888888
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 442 KLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888776 33444 445555555555667788899999998888886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.6 Score=34.90 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
.+|..+.+.+.......+++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555555555555555554432 2334555555555542 2233333331 1223333345555555555
Q ss_pred HHHHHHHHHHH
Q 006457 407 VQEGWHWLNTM 417 (644)
Q Consensus 407 ~~~a~~~~~~~ 417 (644)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.12 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56667777777888888888888888877764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.8 Score=34.78 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 77 PCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
..++..+...+.......+++.++..+ ..+...++.++..|++.. ..+....++. . .+......+++.+.+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcCc
Confidence 344444444445555555555555544 244555666666665542 2333334432 1 233444445555555555
Q ss_pred hhHHHHHHHHh
Q 006457 157 AREALLLFKEF 167 (644)
Q Consensus 157 ~~~A~~~~~~m 167 (644)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55665555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=6.3 Score=36.69 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAG-VR-PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
.|-.=+..-.+.|++++|.+.|+.+...- .. -...+...++.++-+.+++++|+..+++..+.++-.|+.. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34344444556677777777777777542 11 1344566666677777777777777777766655555543 333333
Q ss_pred HHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc-----------------hhHH
Q 006457 436 LLGRAGKLKEAYDLIEGMKV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC-----------------GYHV 497 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~ 497 (644)
+++ .|...+. .-|. .-...|...++.+++..|++. ..-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333 1111110 0011 011234444444455555542 2334
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+++-|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6778899999999999999999875
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.78 Score=43.80 Aligned_cols=159 Identities=10% Similarity=-0.026 Sum_probs=115.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHH----HHHHhhcCCH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCM----VDLLGRAGKL 443 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 443 (644)
-+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888999999999876 577888888888999999999999999998865 345666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC----CchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN----NCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
++|++.-++. .+.| |...-.++.......|+..++.+..++-...-.. -...|-..+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4443 4445566777778889999999888776443221 12344455556777899999999998
Q ss_pred HHhhCCCcCCCc
Q 006457 518 LMKNRRLAKTPG 529 (644)
Q Consensus 518 ~m~~~~~~~~~~ 529 (644)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444544443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.9 Score=42.46 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAG----VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCM 433 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 433 (644)
|+.-+..| +.|++.+|...|...++.. ..||. +-.|..++...|+++.|..+|..+.++++-.|. ++.+--|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 55544433 3456777777777776642 12233 333666777777777777777777665555444 3555556
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 006457 434 VDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~ 453 (644)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.11 E-value=4.9 Score=42.18 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----ccCCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAG-VRPNY-----ITFVSVLSACS----HAGLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
.++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444555566666666666554422 11111 12333333332 245678888888888553 4665555
Q ss_pred HHH-HHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH-HHHHH
Q 006457 431 GCM-VDLLGRAGKLKEAYDLIEGMKV------KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV-LLSNI 502 (644)
Q Consensus 431 ~~l-i~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 502 (644)
... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+.+.-+...|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 433 4566778999999999986521 112334444556677888999999999999987655444444 45556
Q ss_pred HhhcCCc-------hHHHHHHHHHhh
Q 006457 503 YANAGRW-------EDVERTRSLMKN 521 (644)
Q Consensus 503 ~~~~g~~-------~~a~~~~~~m~~ 521 (644)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6788888 888888887753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.5 Score=35.54 Aligned_cols=112 Identities=11% Similarity=-0.035 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
...+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+--.|+ .-|...+.+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 344556666666666666553 111 2234455666666666666666666666543222222 22333333332222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 442 KLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 442 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+.++.-+- ..+ +..+....|...|+++++..|++.
T Consensus 97 ~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2111111111 111 111234577788888888888864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.01 E-value=5.7 Score=41.11 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=99.1
Q ss_pred HHHHhCCChhHHHHHHHH-hHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHH
Q 006457 149 TGYVQNDNAREALLLFKE-FLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGN 227 (644)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 227 (644)
....-.++++++.++.+. -. ...++ ..-...+++-+.+.|..+.|.++-. |+ .
T Consensus 269 k~av~~~d~~~v~~~i~~~~l------------l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~ 322 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNL------------LPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---D 322 (443)
T ss_dssp HHHHHTT-HHH-----HHHHT------------GGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---H
T ss_pred HHHHHcCChhhhhhhhhhhhh------------cccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---H
Confidence 445557888887777762 11 11222 3346667777777888888777632 32 2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHH
Q 006457 228 TLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLR 307 (644)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~ 307 (644)
.-.+...++|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+.. | +..++-.+...|+.+
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d---~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-------D---FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HH
T ss_pred HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------C---ccccHHHHHHhCCHH
Confidence 33456678999999999887765 56799999999999999999999998875 1 455666677778877
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 308 LGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 308 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.-.++.......| -+|....++...|++++..+++.+.
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7777776666655 2344444555567777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.87 E-value=4.1 Score=33.48 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=64.9
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---------------------CCCHhHH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---------------------EKDAVTW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------~~~~~~~ 257 (644)
.-.|..+++.++.....++. +..-+|.+|--....-+-+...++++.+- ..+....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34577888888888777653 33334444333333333333333333321 1122334
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL 321 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 321 (644)
...+......|+-++-.+++.++. . +-.+++.....+..||.+.|+..++.+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~-k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELK-K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHh-h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 455667777788777777777775 3 4566777777888888888888888888888877774
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.8 Score=42.77 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCC--CchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCC
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPN--NCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTP 528 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 528 (644)
..|...+.+.|..++|.+.++.+++..|. +...+..|+..+...+++.++..++.+-.+..+++..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 44556666777777777777777766554 3446666777777777777777777766544444443
|
The molecular function of this protein is uncertain. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.45 E-value=4.6 Score=35.16 Aligned_cols=134 Identities=12% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC--CChHHHHHHHhhCC
Q 006457 58 LRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKC--GELSDARKLFDEIP 135 (644)
Q Consensus 58 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~ 135 (644)
++.++.+.+.+++|+...+..+++.+.+.|.+.... .++..++-+|.......+-.+... .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345566667888888889999999998888765443 344455555544333333222211 11344555565555
Q ss_pred CCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 006457 136 QRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215 (644)
Q Consensus 136 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 215 (644)
. .+..++..+...|++-+|+++.+... . .+...-..++.+....+|...--.++....
T Consensus 90 ~------~~~~iievLL~~g~vl~ALr~ar~~~------------~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 T------AYEEIIEVLLSKGQVLEALRYARQYH------------K----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h------hHHHHHHHHHhCCCHHHHHHHHHHcC------------C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 57778888899999999999988742 1 222334556777777777666666666655
Q ss_pred Hh
Q 006457 216 KR 217 (644)
Q Consensus 216 ~~ 217 (644)
..
T Consensus 148 ~~ 149 (167)
T PF07035_consen 148 ER 149 (167)
T ss_pred Hh
Confidence 43
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.44 E-value=8.8 Score=35.35 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=93.0
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcC
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--VRSWTAMIAGYGMHC 370 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 370 (644)
|-....+|....++++|..-+....+. ...+...|. ....++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555666666666655554431 111111111 1122344444444444322 223445556666667
Q ss_pred CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 371 RAREALDLFYKMIK--AGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 371 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.++.|-..+++.-+ .++.|+.. .|..-+......++...| .+.+..+...|.+..++++|
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 66666555554432 12334321 122222222222222222 23344445566666777776
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc----CCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 447 YDLIEGMK-------VKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL----EPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 447 ~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
-..|.+-. .-|+. ..+-+.|-.+.-..|+..|+..++.--++ .|++..+...|+.+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66555432 11121 12334444445555777777777765443 355666666666654 5566676665
Q ss_pred HH
Q 006457 515 TR 516 (644)
Q Consensus 515 ~~ 516 (644)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.33 E-value=11 Score=36.02 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCH
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 443 (644)
.....|++.+|..+|+...+.. +-+......+..++...|+++.|..++..+-.+ ..-+ .....+-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777766542 222344455666777777777777777665221 1111 11112234445555544
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC--CCCchhHHHHHHHHhhcCC
Q 006457 444 KEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE--PNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 444 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 508 (644)
.+..++-++.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...--.|..++.-.|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444443344 44455556666677777777766665555543 2344555555555555553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.4 Score=42.16 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=67.0
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 436 LLGRAGKLKEAYDLIEGM-K-VKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
-+.+.|++++|..-|... . .+| ..+.|..-..+..+.+.++.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 455677777777766654 1 111 234455555677888999999999999999999888888888889999999
Q ss_pred chHHHHHHHHHhhCC
Q 006457 509 WEDVERTRSLMKNRR 523 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~ 523 (644)
+++|++-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.13 E-value=4.9 Score=34.58 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 475 (644)
++.-...++.+++..+++.+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-..|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456778899999998883 466753 233333556788999999999999984 334445556777777666555
Q ss_pred hHHHHHHHHhhccCCC
Q 006457 476 DLGEIAAKKLFELEPN 491 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~ 491 (644)
..-....+++++..|+
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 5566666777776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.69 E-value=8.5 Score=41.86 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=88.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVI--VGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHC 370 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 370 (644)
...-|....+...++.|..+-. ..+..++.. ......+-+.+.|++++|..-|-+...--.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 4444555555555555544332 222222211 1122233344567777777666543321111 22455556666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE-PGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+..+-..+++.+.+.|+.- ...-+.||.+|.+.++.+.-.++.+.-- + |.. -| ....+..+.+.+-+++|.-+
T Consensus 412 ~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHHH
Confidence 6666667777777777543 3333457777777777777666655431 1 111 12 23345566666667777666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 450 IEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 450 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
-.+.+. .......+ +...+|+++|.+.++.
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 655543 22222222 2345667777666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.62 E-value=9.7 Score=40.01 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcCCHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVG-TSIIDMYCKCGQVDLARKAFNQMKEK-------NVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A 375 (644)
...+.+.+++..+.+.= |+...| -.-...+...|++++|.+.|++.... ....+--+.-.+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34556666666665532 332222 22344555667777777777654321 112233344445556666666
Q ss_pred HHHHHHHHHc
Q 006457 376 LDLFYKMIKA 385 (644)
Q Consensus 376 ~~~~~~m~~~ 385 (644)
.+.|.++.+.
T Consensus 325 ~~~f~~L~~~ 334 (468)
T PF10300_consen 325 AEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhc
Confidence 6666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.47 E-value=14 Score=35.71 Aligned_cols=16 Identities=19% Similarity=-0.201 Sum_probs=8.8
Q ss_pred HHhcCChhHHHHHHHH
Q 006457 469 CRIHKNVDLGEIAAKK 484 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~ 484 (644)
+.+.++++.|...|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455566666665553
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.2 Score=35.10 Aligned_cols=19 Identities=16% Similarity=-0.186 Sum_probs=8.4
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 006457 434 VDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~ 452 (644)
...|...|+.+.|+..|..
T Consensus 112 gqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 3344444444444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=12 Score=34.56 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH---HHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR--PNY---ITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~---~t~~~ll~ 399 (644)
+..|+--..+|..+|..+.|-..+++.-+ ...+-++++|+++|++...-=.. -+. ..+..+-+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34566677789999998888777665321 12344677777777775532001 111 12333444
Q ss_pred HHHccCCHHHHHHHHHHHhh---hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CC-CCHHHHHHHHHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGH---EFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM---K--VK-ADFVVWGSLLGAC 469 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~--~~-p~~~~~~~ll~~~ 469 (644)
.+.+...+++|-..|.+-.. ...--|+ -..|-+.|-.|.-..++..|...++.. + .. .+..+...||.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 55566666666555543310 0111122 233555666677788999999999984 2 12 2556788888887
Q ss_pred HhcCChhHHHHHHH
Q 006457 470 RIHKNVDLGEIAAK 483 (644)
Q Consensus 470 ~~~g~~~~a~~~~~ 483 (644)
..||.++...++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 4567777666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.09 E-value=9.6 Score=34.41 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=26.0
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..+|.-|++-|...|+.++|..+|+.....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 368889999999999999999999987753
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.90 E-value=19 Score=36.14 Aligned_cols=148 Identities=9% Similarity=-0.067 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh-cCCCCChhHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHE-FNIEPGVEHY 430 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 430 (644)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-....-..|+.++|...++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888888888888888888888877643111 2233333444555667778888777776551 1111111111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAYDL-IEGMKVKADFVVWGSLLGACRI------HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000001122222222223 37788899999999999998877777777655
Q ss_pred h
Q 006457 504 A 504 (644)
Q Consensus 504 ~ 504 (644)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.56 E-value=10 Score=36.83 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHccCC--HHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 373 REALDLFYKMIKAGVRPN-Y-ITFVSVLSACSHAGL--VQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
+.+...|+.+.+.|+..+ . .....+|..+..... +.++.++++.+.+ .|+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 456677788887777653 3 333334433322222 3467778888855 5888888777766543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=19 Score=34.87 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=130.1
Q ss_pred hcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCc----HHHHHHHHHHHHhCCCC
Q 006457 31 KYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDL----HSGKQAHQQAFIFGFHR 106 (644)
Q Consensus 31 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~ 106 (644)
.+... |.......+.++...|. .+++..+..+.. .+|...=...+.+++..|+. ..+..++..+... .+
T Consensus 31 ~L~d~-d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 31 LLDDH-NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHhCC-CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 33444 77677777788877775 555555555554 23555555666777777763 3455556555332 56
Q ss_pred ChhHHHHHHHHHHhCCCh-----HHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCC
Q 006457 107 DVFVSSALIDMYSKCGEL-----SDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENS 181 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 181 (644)
+..+-...+.++...+.. ..+...+...... ++...--..+.++.+.++ ..++..+-.+. .
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L------------~ 169 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD-KSTNVRFAVAFALSVIND-EAAIPLLINLL------------K 169 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC-CCHHHHHHHHHHHhccCC-HHHHHHHHHHh------------c
Confidence 777777777777665432 2334444333221 444455566677777776 56777777665 2
Q ss_pred CCccCCHhhHHHHHHHhhcCCC-chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHH
Q 006457 182 DNVFVDSVAIASVLSACSRVTV-NGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSI 260 (644)
Q Consensus 182 ~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 260 (644)
.+|...-...+.+++..+. ...+...+..+. -.++..+-...+.++++.|+.+..-.+.+.+..++ ..-..
T Consensus 170 ---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 170 ---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred ---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHH
Confidence 2444444444555554421 222333332222 35566677777777777777443333444444433 23355
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI 300 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 300 (644)
+.++...|.. +|+..+..+. . -.||...-...+.+|
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~-~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLL-Y--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHH-h--hCCChhHHHHHHHHH
Confidence 6666677664 5666666665 2 233555544444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.41 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777777764
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.3 Score=40.44 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIK-----AGVRPNYITFVSV 397 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 397 (644)
.++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35667888888888888888888887643 667888999999999999999888888765 4666766655544
Q ss_pred HHH
Q 006457 398 LSA 400 (644)
Q Consensus 398 l~a 400 (644)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.90 E-value=20 Score=35.12 Aligned_cols=216 Identities=10% Similarity=0.022 Sum_probs=125.1
Q ss_pred CCchHHHHHHHHHHHh--CCCCCccHHHHHHHHHHhcCCHHHHHHHHh-cC------CCC--CHhHHHHHHHHHHHCCCh
Q 006457 202 TVNGVTEGAHGFVIKR--GFDSEVGVGNTLIDAYARGGHVDVSRKVFD-GM------IEK--DAVTWNSIIAIYAQNGLA 270 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~------~~~--~~~~~~~li~~~~~~g~~ 270 (644)
.+.+.+.+.+...... ....-..++..+..+.++.|.+++++..-- .| .+. -..+|-.+..++-+--++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555443321 111123456677778888888877764321 11 111 234566666677666677
Q ss_pred hHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHH
Q 006457 271 AEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-----ESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~ 342 (644)
.+++.+-+.-....|..|. -....++..++...+.++++.+.|+...+.... ....++-+|...|.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 7777766554423344442 123344667777888899998888887663211 23457788888899988888
Q ss_pred HHHHHHHhc-------CCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcc
Q 006457 343 LARKAFNQM-------KEKNVR------SWTAMIAGYGMHCRAREALDLFYKMIK----AGVRPN-YITFVSVLSACSHA 404 (644)
Q Consensus 343 ~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~ 404 (644)
+|.-+..+. .-.|.. +...|.-++...|+..+|.+.-++..+ .|-+|- ......+...|...
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 876544332 223332 223345567777777777777766543 342221 22344555667777
Q ss_pred CCHHHHHHHHHHH
Q 006457 405 GLVQEGWHWLNTM 417 (644)
Q Consensus 405 g~~~~a~~~~~~~ 417 (644)
|+.+.|+.-|+..
T Consensus 260 gd~e~af~rYe~A 272 (518)
T KOG1941|consen 260 GDLERAFRRYEQA 272 (518)
T ss_pred ccHhHHHHHHHHH
Confidence 8888877766655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.82 E-value=7.8 Score=31.83 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 335 YCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.+..|+++.|.+.|.+... .+...||.-..++.-.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555544331 2344445444555445555555444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.5 Score=37.69 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=31.7
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+++.+.++.++.-+.-+.|..+..-..-++.+...|+|.+|.++++.+.+++
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344555566666666655666666655566666666666666666666654443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.16 E-value=68 Score=39.90 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-CCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHcc
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDG-MIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHL 303 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~ 303 (644)
+-.+...|+..+++|...-+... ..+++. ..-|.-....|++..|...|+.+. +..|+ ..+++.++......
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcc
Confidence 34444567777777666655552 222222 223444566778888888888876 33444 55666666666666
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH-H-HHHHhcC--CHHHHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAM-I-AGYGMHC--RAREALDL 378 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~ 378 (644)
+.++......+-..... .+.... ++.=+.+--+.++++....... ..+..+|.+. + ....+.. +.-.-.++
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 66665554333332221 222222 2222334456666666666555 4555666555 2 2222211 11111223
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------HHhhhcCCCCC------hhHHHHHHHHHhhcCC
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN----------TMGHEFNIEPG------VEHYGCMVDLLGRAGK 442 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~~~~~~~~p~------~~~~~~li~~~~~~g~ 442 (644)
.+.+++.-+.| +.+|+..|.+..+.++.- ......+..++ ...|..-+..-....+
T Consensus 1573 i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~ 1644 (2382)
T KOG0890|consen 1573 IENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFR 1644 (2382)
T ss_pred HHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHH
Confidence 33333221111 122222222111111111 11111123332 2222222221111112
Q ss_pred HHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 443 LKEAYDLIEGM----KVKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 443 ~~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
..+-.--+++. ...| -..+|......++..|.++.|..+.-++.+..+ +..+...+......|+...|.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHH
Confidence 22221112211 1222 245899999999999999999999988888775 468999999999999999999
Q ss_pred HHHHHHhhCCC
Q 006457 514 RTRSLMKNRRL 524 (644)
Q Consensus 514 ~~~~~m~~~~~ 524 (644)
.+++...+...
T Consensus 1723 ~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1723 SVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhc
Confidence 99999886554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.11 E-value=9.4 Score=33.93 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC------hhH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG------VEH 429 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 429 (644)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++..-.....| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34445555555555555555555555543333322 3444555555555665555555554321111111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
|..|. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.96 Score=27.75 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666667777777777777777644
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=21 Score=33.37 Aligned_cols=182 Identities=11% Similarity=0.028 Sum_probs=108.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS 396 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (644)
|-...|+.-+. -.+.|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++....-..-...-|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 44455554444 457899999999999998532 23455567788899999999999999887432222233444
Q ss_pred HHHHHHc---c----CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHH
Q 006457 397 VLSACSH---A----GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVW--GSLLG 467 (644)
Q Consensus 397 ll~a~~~---~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~ 467 (644)
.|.+.+. . .+...+.+-|..+. .+|.-|=.+.--.+|..-+.... |.... .++..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~-------------~~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~Iar 175 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFK-------------ELVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIAR 175 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHH-------------HHHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444432 1 22222333332221 11222222222222322222221 11111 23457
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCc---hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNC---GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 78899999999999999998766544 4556677789999999999988776653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.48 E-value=7 Score=38.01 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--C----CChHHHHHHHhhCCCC-----CCCeecHHHHHHHHHhCCCh
Q 006457 89 LHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK--C----GELSDARKLFDEIPQR-----IRNIVSWTSMLTGYVQNDNA 157 (644)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~ 157 (644)
+.....+++.+++.|+..+.++|-+....... . -...+|..+|+.|.+. .++-.++..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888877766654333332 1 1345677888888776 3345556666544 23332
Q ss_pred ----hHHHHHHHHhHhhhhccCCCCCCCCCccCC--HhhHHHHHHHhhcCCCch--HHHHHHHHHHHhCCCCCccHHHHH
Q 006457 158 ----REALLLFKEFLLEESECGGASENSDNVFVD--SVAIASVLSACSRVTVNG--VTEGAHGFVIKRGFDSEVGVGNTL 229 (644)
Q Consensus 158 ----~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l 229 (644)
+.+..+|+.+. ..|...+ ....+.+|..+....... .+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~------------~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLA------------DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHH------------HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44556666665 4455442 234444554444433333 556666677777776665555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.43 E-value=17 Score=36.42 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC----CCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP----NNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
...+|..+...++++|+++.|...+.++...++ ..+.....-++.....|+-++|.+.++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999988652 2456777778999999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.66 Score=28.49 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
|..|...|...|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.08 E-value=44 Score=36.41 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=37.7
Q ss_pred HHHHHhcCCchHHHHHHhhcCCCCC----cchHHHHHHHHHcCCCchHHHHHHHHhhH
Q 006457 13 VSNVDKHSTNTNLTTLFNKYVDKNN----VFSWNSVIADLARGGDSVEALRAFSSMRK 66 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 66 (644)
+..+.+.+.+++|+..-+.-+..+. ...+-..|..+...|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 4556777888888888776554321 23577788888888888888777777654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.89 E-value=47 Score=36.53 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 344455566777777777776533 777888888888888766655555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=0.96 Score=43.32 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=80.2
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VK-ADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~ 475 (644)
+-|.+.|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-.+..- .. .-.-.|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998763 4567 88888888889999999988876655441 11 0122444445555567889
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
.+|.+-++.+++++|++. -|-..|++.....++.-+.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATKS 220 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhhc
Confidence 999999999999999853 455556666666665544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.9 Score=36.27 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=40.3
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..++.+.++.++.-+.-+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777777777777777777777888888888888887777655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.2 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555566666666666666666666653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.09 E-value=15 Score=32.01 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=23.3
Q ss_pred hhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 438 GRAGKLKEAYDLIEGMKVKAD---FVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.-.|.+++...-.+.+....+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555555544421111 12233444444555556555555555544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.93 E-value=28 Score=31.99 Aligned_cols=23 Identities=4% Similarity=-0.139 Sum_probs=13.2
Q ss_pred HhcCChhHHHHHHHHhhccCCCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
...+++.+|..+|+++-...-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34556666777766665544333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.7 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.52 E-value=12 Score=39.26 Aligned_cols=149 Identities=15% Similarity=0.059 Sum_probs=102.5
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 006457 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
-.|+++.|..++-.++++ .-+.++.-+.+.|-.++|+++ .+|+. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457788887777666632 334556666777777777754 33333 2222 346789999988766
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|..
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 55 346679999999999999999999998764 3567777777888877665666655555554422
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHH
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
-.+|...|++++..+++..-
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHhc
Confidence 23567889999998887543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.34 E-value=7.8 Score=34.44 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=68.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCC--cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-Ch------h
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSLTPT--RSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHR-DV------F 109 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~------~ 109 (644)
..+..+..-|.+.|+.+.|++.|.++.+....|. ...+-.+|+.+.-.+++..+......+...--.+ |. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4678888999999999999999999988654443 3356777888888889988888777766542222 22 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCC
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQR 137 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 137 (644)
+|..|.. ...+++..|-+.|-.....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2333332 3458999999888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.42 E-value=10 Score=36.27 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=68.2
Q ss_pred hCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCC
Q 006457 217 RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-K--------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVK 287 (644)
Q Consensus 217 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 287 (644)
.|.+....+...++..-....+++++...+-.+.. + ..++|--++. .=++++++.++..=. +.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npI-qYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPI-QYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcc-hhccc
Confidence 35555566666777777777778888777665522 1 3334433333 235678888877777 78888
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhC
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD 320 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 320 (644)
||.+|+..+|..+.+.++...|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777776544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.30 E-value=4.3 Score=38.66 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445566666677777777777777777777777777777777777777777777777765
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.11 E-value=18 Score=28.18 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555543321 22222223445677899999999999988899999988754 4557777777777788777
Q ss_pred CCCCCHHHHHH
Q 006457 386 GVRPNYITFVS 396 (644)
Q Consensus 386 g~~p~~~t~~~ 396 (644)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 666666644
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.04 E-value=1.3 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHH
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888899888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.42 E-value=9.8 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335666666677777889999999999999999999999999998854333 24456665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.31 E-value=1.8 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.09 E-value=8.8 Score=29.96 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+..+-+..+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555555666667889999999999999999999999999998866544 33336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.77 E-value=39 Score=31.10 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=34.5
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHh-cCChhHHHHHHHHhhccCCCC
Q 006457 437 LGRAGKLKEAYDLIEGMK---VKADFVVWGS---LL--GACRI-HKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll--~~~~~-~g~~~~a~~~~~~~~~~~p~~ 492 (644)
-+..|++.+|.++|++.. ...+..-|.. ++ ..|.- ..|.-.+..++++-.+++|.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 346678888888887762 2222333322 11 23333 367777888889999999863
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.72 E-value=4.4 Score=38.59 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCC---CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLS---LTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (644)
.+.+-..++..-.+..+++.+...+-+++..- ..|+. +-.+.++.|.+ -+++.+..++..-+..|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44555566666666677777877777666421 22222 22233333333 356677777777788888888888888
Q ss_pred HHHHHHhCCChHHHHHHHhhCCC
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQ 136 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~ 136 (644)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888777666544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.67 E-value=24 Score=30.00 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=48.7
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
...++.+++..+++.|. -+.|+. ..-..-...+.+.|++++|..+|++....+ ....-..|+..|.....-..=.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 34788888888888882 456652 222333455678899999999999885433 3333345555554433322233
Q ss_pred HHHHHhhcc
Q 006457 480 IAAKKLFEL 488 (644)
Q Consensus 480 ~~~~~~~~~ 488 (644)
....++++.
T Consensus 98 ~~A~~~le~ 106 (153)
T TIGR02561 98 VHADEVLAR 106 (153)
T ss_pred HHHHHHHHh
Confidence 333444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=84 Score=34.58 Aligned_cols=263 Identities=9% Similarity=0.006 Sum_probs=125.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcc
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHL 303 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~ 303 (644)
..-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|.+..+.+- ..| .........++..+.+.
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW-~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELW-LTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccC-CCCChHHHHHHHHHHHc
Confidence 33444555667788888888844333 3455555667778888899888887777775 333 22345566677766655
Q ss_pred ccHHHHH--HHHHHHHHhCC-----------CCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH--
Q 006457 304 GVLRLGK--CIHDQVIKMDL-----------EES-VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYG-- 367 (644)
Q Consensus 304 ~~~~~a~--~i~~~~~~~~~-----------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-- 367 (644)
|.+.... +=+..+...|- .++ ......++..+. +...+..++.... ++...-...+.++.
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 5433221 11111111110 111 111122222221 1222222222211 11111111112222
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 006457 368 MHCRAREALDLFYKMIKA-GVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (644)
...+.+.|..++.+.... ++.+... ....+.......+...++...++.... ...+......-+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHH
Confidence 234557777777766433 2333222 223333323333224555666555422 1123444444455555777888
Q ss_pred HHHHHHHhCCCC-CCHHHHH-HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 445 EAYDLIEGMKVK-ADFVVWG-SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 445 ~A~~~~~~~~~~-p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
.+...|..|+.. .+..-|. =+..+....|+.++|...|+++.. +. ..|-.|+
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LA 383 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVA 383 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHH
Confidence 777777777411 1112222 234555557788888888777633 22 3555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.20 E-value=7.7 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=45.9
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH-hCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFI-FGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~ 116 (644)
+.-++.+-++.+....+-|++....+.+++|.+.+++..|..+++-+.. .|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4456667777777778889999999999999999999999999987763 332 3445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.13 E-value=6.1 Score=38.12 Aligned_cols=86 Identities=16% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
..-|.++|.+++|++.|.+... +.| |.+++..-..||.+...+..|..-....+. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4678999999999999998877 466 999999999999999888877766555532 1123455666554
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 006457 442 -------KLKEAYDLIEGM-KVKADF 459 (644)
Q Consensus 442 -------~~~~A~~~~~~~-~~~p~~ 459 (644)
...+|.+-++.. ..+|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 445554444433 356663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 1e-09
Identities = 14/133 (10%), Positives = 41/133 (30%), Gaps = 7/133 (5%)
Query: 330 SIIDMYCKCGQVDLARKAFNQMKEK-------NVRSWTAMIAGYGMHCRAREALDLFYKM 382
+ Q+ LA + + + A++ G+ +E + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 383 IKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442
AG+ P+ +++ + L + ++ ++ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 443 LKEAYDLIEGMKV 455
LK + + +
Sbjct: 252 LKAVHKVKPTFSL 264
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 7e-08
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 10/157 (6%)
Query: 292 TLSAVLLAIAHLG----VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347
L A L H Q K ++ + +++ + + G
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 348 FNQMKEKNVR----SWTAMIAGYG-MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS 402
+K+ + S+ A + G A +M + G++ + +LS
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 403 HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR 439
A +++ T + P V + D+ +
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 7e-06
Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 15/171 (8%)
Query: 191 IASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI 250
+A +L V + G + + + ++ +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 251 EK-------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHL 303
+ +N+++ +A+ G E + V + K + + ++ +A L +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLLSYAAALQCMGRQ 213
Query: 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK 354
I+ LE+ G + ++ + R + K
Sbjct: 214 DQ-------DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 12/115 (10%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 179 ENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI------KRGFDSEVGVGNTLIDA 232
+ + + + C AH ++ ++ + + N ++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLT---DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 233 YARGGHVDVSRKVFDGMIEK----DAVTWNSIIAIYAQNGLAAEAL-DVFDQMVK 282
+AR G V + + D +++ + + + A + +QM +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 99/619 (15%), Positives = 168/619 (27%), Gaps = 215/619 (34%)
Query: 88 DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFD--EIPQRIRNIVSWT 145
D +G+ +Q I D FV FD ++ ++I+S
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV------------------DNFDCKDVQDMPKSILSKE 49
Query: 146 SMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV----------AIASVL 195
+ + D L LF + L + E FV+ V I +
Sbjct: 50 EIDHIIMSKDAVSGTLRLF--WTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 196 SACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSR-----KVFDGMI 250
S +T ++ +R + N + Y +VSR K+ ++
Sbjct: 103 RQPSMMTRM--------YIEQR---DRLYNDNQVFAKY------NVSRLQPYLKLRQALL 145
Query: 251 EKDAVTWNSIIAIYAQNG-----LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV 305
E + I G +A + S V+C +
Sbjct: 146 ELRPAKN---VLIDGVLGSGKTWVALDVC-------LSYKVQCKM-----------DFKI 184
Query: 306 --LRLGKC-IHDQVIKM--DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRS 358
L L C + V++M L Q+D + + N++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKL----------------LYQID---PNWTSRSDHSSNIK- 224
Query: 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG 418
+H + L K Y + VL VQ W
Sbjct: 225 -------LRIH-SIQAELRRLLK------SKPYENCLLVLLN------VQNAKAW----- 259
Query: 419 HEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLG 478
+ FN+ C + L R K+ D + + H ++ L
Sbjct: 260 NAFNL-------SCKILLTTRF---KQVTDFLSAATTTHISLD----------HHSMTLT 299
Query: 479 EIAAKKLF---------ELEPNNCGYHVLLSNIYA-----NAGRWEDVERTRSLMKNRRL 524
K L +L + +I A W++ + + +L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----VNCDKL 355
Query: 525 AKTPGFSL-----VELRGKVHAFLVGDKEHPQHEKI-YEYLEEL--NVKLQEVGYVTDMT 576
SL E R V P I L + +V +V +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVM---VVV 408
Query: 577 SVIHD---VDQEEKEMTLRIHS------EKLANLRVCGDCHTVIRLISKVVDREIVVRDS 627
+ +H V+++ KE T+ I S KL N H R IV +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---ALH-----------RSIVDHYN 454
Query: 628 KRFHYFKDGLC-SCGD-YW 644
+ D L D Y+
Sbjct: 455 IPKTFDSDDLIPPYLDQYF 473
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.04 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.94 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.74 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.18 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.42 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.03 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.92 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.3 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.87 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.01 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.46 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.03 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.64 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.87 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.1 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 84.0 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.04 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.41 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=374.15 Aligned_cols=482 Identities=10% Similarity=-0.012 Sum_probs=398.0
Q ss_pred HHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQA 95 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 95 (644)
+.+.|.+..+...|+.++.+ ++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLS-REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------C-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHH-HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 45567778888888888877 899999999999999999999999999986 467889999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-----------------CCCeecHHHHHHHHHhCCChh
Q 006457 96 HQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-----------------IRNIVSWTSMLTGYVQNDNAR 158 (644)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~ 158 (644)
++.+... +++..+++.++.+|.++|++++|.++|+++... ..+..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988653 678999999999999999999999999964431 114789999999999999999
Q ss_pred HHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHHhhcCCCchH--HHHH-HHHHHHhCCCCCccHHHHHHHHHH
Q 006457 159 EALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSACSRVTVNGV--TEGA-HGFVIKRGFDSEVGVGNTLIDAYA 234 (644)
Q Consensus 159 ~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~ 234 (644)
+|+++|++|.. ..|+.. .+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.
T Consensus 218 ~A~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 218 RAKECYKEALM--------------VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHHHHHH--------------HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHH--------------hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 99999999972 234433 33334333332222111 1111 333333344445566777899999
Q ss_pred hcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH
Q 006457 235 RGGHVDVSRKVFDGMIE--KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i 312 (644)
+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++. ..+ +.+..++..++.++.+.|++++|..+
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-EID-PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999977 799999999999999999999999999998 333 44778899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 99999765 66788999999999999999999999998763 467899999999999999999999999999864 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKAD--FV 460 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~ 460 (644)
+..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 7889999999999999999999999999763 3446889999999999999999999999987 44777 78
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+|..++.+|...|++++|...++++++++|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=359.25 Aligned_cols=484 Identities=10% Similarity=-0.006 Sum_probs=413.5
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCC-CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVD-KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.++...|+.++..|.+.|++++|..+|+++.. .|+..+|+.++.+|.+.|++++|+.+|+++.. .+++..+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 346778899999999999999999999999863 35878999999999999999999999999875 367889999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIF---------------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSW 144 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 144 (644)
.++.+.|++++|.++++.+... |.+++..+|+.++.+|.+.|++++|.++|+++....| +...|
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 2234578999999999999999999999999976433 45556
Q ss_pred HHHHHHHHhCCChhHHHHH---HHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 006457 145 TSMLTGYVQNDNAREALLL---FKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS 221 (644)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~---~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 221 (644)
..+...+...+..+.+... +..+. ..+..++..+|..++..+.+.|+++.|.++++.+.+. ++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYS------------KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHH------------GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccc------------cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 6666555544433322211 44444 4455556667777888899999999999999988765 57
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHH
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLL 298 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 298 (644)
+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++. . ..+.+..++..+..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-D-RHPEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-H-HCTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-h-hCcccHHHHHHHHH
Confidence 89999999999999999999999999983 3478899999999999999999999999997 3 23557889999999
Q ss_pred HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 375 (644)
.+.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998865 45688999999999999999999999998763 4788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPG--VEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+++|++|.+.. +.+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.++|
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999864 4578999999999999999999999999996532 66787 789999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 451 EGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 451 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
+++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 987 3334 788999999999999999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=254.16 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc---------cHHHHHHHHHHHHHhCCCCch
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG---------VLRLGKCIHDQVIKMDLEESV 325 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~~~~~~~ 325 (644)
..++.+|.+|++.|++++|+++|++|. ..|+.||.+||+++|.+|++.+ .++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346667777777777777777777776 6677777777777777776543 356777777777777777777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
.+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777775 3677777777777777777777777777777777777777777777777
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR 439 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (644)
++.|++++|.++|++|.. .+..|+..||+.++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 777777777777777744 4777777777777776654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=229.55 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=264.8
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChh
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAR 158 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 158 (644)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566788888888887777764 334556666677777788888888777765543 346667888888888888888
Q ss_pred HHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 006457 159 EALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 159 ~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
+|+..|+++.. +.|+ +...+..+..+|.+.|+
T Consensus 85 ~A~~~~~~al~--------------~~p~----------------------------------~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 85 EAIEHYRHALR--------------LKPD----------------------------------FIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHH--------------HCTT----------------------------------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH--------------cCcc----------------------------------hHHHHHHHHHHHHHcCC
Confidence 88888887651 1222 22344555555555555
Q ss_pred HHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
+++|.+.|+++.. | +...+..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.
T Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554421 2 3344555555555566666666666665511 122345555566666666666666666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
+++.. +.+...+..+...+...|++++|...|++... .+..+|..+...|...|++++|++.|+++.+.+ +.+..
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 66544 33455667777788888888888888876642 356788888888999999999999999988853 33567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
++..+..++.+.|++++|...|+.+.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7888888899999999999999988663 3456788889999999999999999999886 3444 4678899999999
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
..|++++|...++++++++|+++..+..++.++...|+
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999988877663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=248.62 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=171.1
Q ss_pred CCCccCCH-hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHH
Q 006457 181 SDNVFVDS-VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNS 259 (644)
Q Consensus 181 ~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 259 (644)
..++.+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------- 80 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------- 80 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----------------
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----------------
Confidence 55554433 356777888888888888888888888888888888888888888777653321
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
.+.+..++|.++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.|
T Consensus 81 -----~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 81 -----SPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp -----SCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred -----hhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 12345688999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 340 QVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 340 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999997 4899999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=220.59 Aligned_cols=352 Identities=12% Similarity=0.074 Sum_probs=304.7
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH
Q 006457 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD-SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV 225 (644)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 225 (644)
+...+.+.|++++|++.+.++.. ..|+ ...+..+...+...|+++.+...+...++.. +.+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR--------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHH
Confidence 34567789999999999998762 2454 4455556667788999999999999888764 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIA 301 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~ 301 (644)
+..+...|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|++.|+++. . ..|+ ...+..+...+.
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~--~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-Q--YNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-H--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999883 3356789999999999999999999999998 3 2454 445667778888
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDL 378 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 378 (644)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..
T Consensus 147 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999875 45678899999999999999999999998863 3 567899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-C
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-V 455 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~ 455 (644)
|++..... +.+..++..+..++...|++++|...|+.+.+ ..| +...|..+...|.+.|++++|.+.|+++ . .
T Consensus 226 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99998853 33578899999999999999999999999965 344 5788999999999999999999999987 2 3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+++..+|..+...+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999999999999999999999999999985
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=218.85 Aligned_cols=441 Identities=12% Similarity=-0.014 Sum_probs=247.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK 120 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (644)
|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|.+.++.+++.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555533 455555555555555555555555555555543 2334455555555555
Q ss_pred CCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhcc-------CCCCCCCCCccCCHhhHH
Q 006457 121 CGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESEC-------GGASENSDNVFVDSVAIA 192 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------~~~~~~~~~~~p~~~t~~ 192 (644)
.|++++|...|+++... +++......++..+........+.+.+..+....... ...........|+.....
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 66666666555554433 1222333333333322222222222221111000000 000000111222222222
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR---GGHVDVSRKVFDGMIE----------------K- 252 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~- 252 (644)
..+..+........ ..-+.+...+..+...+.. .|++++|...|+++.. +
T Consensus 166 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 166 SFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp HHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 22211111111000 0001112333333333333 6777777777766533 1
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
+..+|..+...+...|++++|+..|+++. .. .|+..++..+...+...|+++.|...++.+.+.. +.+..++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAI-EL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHH-HH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 34566777777777888888888887776 22 2336666777777777777777777777777654 34556677777
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
..|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 777788888888877776542 355677777777778888888888888777652 3345667777777777888888
Q ss_pred HHHHHHHHhhhcCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006457 410 GWHWLNTMGHEFNIEPG----VEHYGCMVDLLGR---AGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
|...++.+.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 88887777543222222 3377777777777 78888888777765 2223 45677777777788888888888
Q ss_pred HHHHhhccCCCCchhHHHH
Q 006457 481 AAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l 499 (644)
.++++++++|+++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 8888888887776655544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=216.57 Aligned_cols=428 Identities=9% Similarity=-0.061 Sum_probs=318.4
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHh
Q 006457 75 TFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQ 153 (644)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~ 153 (644)
.+......+...|++++|...+..+++.. |+...+..+..+|.+.|++++|...|+++... +.+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556677888999999999999999976 68999999999999999999999999987665 3466789999999999
Q ss_pred CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHH---H
Q 006457 154 NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTL---I 230 (644)
Q Consensus 154 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i 230 (644)
.|++++|+..|+++. ..+ +++......++..+........+.+.+..+...+..|+....... .
T Consensus 86 ~g~~~~A~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 86 LGKFADAMFDLSVLS------------LNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp TTCHHHHHHHHHHHH------------HSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HhhHHHHHHHHHHHH------------hcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 999999999999987 222 234444444444333322222222222211111111111100000 0
Q ss_pred HHHHhcCCHHHHHHHHhcCC---------CC-CHhHHHHHHHHHHH---CCChhHHHHHHHHhHHc----CC-C------
Q 006457 231 DAYARGGHVDVSRKVFDGMI---------EK-DAVTWNSIIAIYAQ---NGLAAEALDVFDQMVKS----TD-V------ 286 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~----~~-~------ 286 (644)
...........+...+.... .+ +...+......+.. .|++++|+..|+++.+. .. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 01111111222222222221 12 24555555555554 89999999999999830 21 1
Q ss_pred -CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHH
Q 006457 287 -KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAM 362 (644)
Q Consensus 287 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (644)
+.+..++..+...+...|+++.|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 310 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 223457778888899999999999999999987644 88889999999999999999999998764 366789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|+
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999863 335678888999999999999999999999663 23357889999999999999
Q ss_pred HHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 443 LKEAYDLIEGM----KVKAD----FVVWGSLLGACRI---HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 443 ~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+++|.+.++++ +..|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999877 22222 4488999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 006457 512 VERTRSLMKNR 522 (644)
Q Consensus 512 a~~~~~~m~~~ 522 (644)
|.+.+++..+.
T Consensus 468 A~~~~~~a~~~ 478 (514)
T 2gw1_A 468 AITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-21 Score=199.82 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=273.4
Q ss_pred CCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHH
Q 006457 186 VDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIA 262 (644)
Q Consensus 186 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 262 (644)
.+...+..+...+...|+++.|..++..+++.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356677888888999999999999999998764 5578899999999999999999999999883 346889999999
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCCh----hhHHHH------------HHHHHccccHHHHHHHHHHHHHhCCCCchh
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNA----VTLSAV------------LLAIAHLGVLRLGKCIHDQVIKMDLEESVI 326 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 326 (644)
.|.+.|++++|++.|+++. . ..|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVL-K--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHH-h--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999998 3 34543 444444 344888999999999999999875 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-----
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSV----- 397 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l----- 397 (644)
++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 899999999999999999999998863 47889999999999999999999999999975 444 3444433
Q ss_pred -------HHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006457 398 -------LSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWG 463 (644)
Q Consensus 398 -------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 463 (644)
..+|.+.|++++|..+|+.+... .|+ ..+|..++.++.+.|++++|.+.++++ ...| +..+|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999663 454 458899999999999999999999986 3344 678999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH------------HHHhhcC-----CchHHHHHHHH
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS------------NIYANAG-----RWEDVERTRSL 518 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 518 (644)
.+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 4466666 45566666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-21 Score=207.37 Aligned_cols=427 Identities=10% Similarity=0.040 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006457 38 VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDM 117 (644)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (644)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999998854 2366778888888999999999999999999876 4467788889999
Q ss_pred HHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH
Q 006457 118 YSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA 197 (644)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~ 197 (644)
|...|++++|...|+.+... | ...+..+..+...+....|+..++++....+. ......|+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~------~~~~~~~~~--------- 164 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN-G--DFDGASIEPMLERNLNKQAMKVLNENLSKDEG------RGSQVLPSN--------- 164 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------------CCCCCH---------
T ss_pred HHHcCCHHHHHHHHHHHhcC-C--CCChHHHHHHHHHHHHHHHHHHHHHHHHhCcc------ccccccchH---------
Confidence 99999999999999755432 2 22233344555566667888888887521000 011122222
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHH--------
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAV---TWNSIIAIYAQ-------- 266 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~-------- 266 (644)
..+..|....+.+.+...+......+.. .+..+...+..
T Consensus 165 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 165 ------------------------------TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp ------------------------------HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred ------------------------------hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2233344444555555555444333222 22222222211
Q ss_pred CCChhHHHHHHHHhHHcCCCCCC--------hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCN--------AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC 338 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (644)
.|++++|+.+|+++. . ..|+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...|...
T Consensus 215 ~~~~~~A~~~~~~~l-~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLL-S--ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHH-C----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHH-H--HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHh
Confidence 135666666666665 2 2233 1234444455566666677777777766654 3355666666777777
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 339 GQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 339 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777766542 345667777777777777777777777777643 2245566667777777777777777777
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChhH
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKA----DFVVWGSLLGACRIH----------KNVDL 477 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~ 477 (644)
.+.+. .+.+...+..+...|.+.|++++|.+.|+++ +..+ ....+..+...+... |++++
T Consensus 369 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 369 ETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 77552 2334566777777777777777777777765 1111 122233444555566 78888
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888777653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=197.89 Aligned_cols=350 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCcc
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVF 185 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 185 (644)
+...+..+...|.+.|++++|..+|+++... +.+..+|..+...|...|++++|+..|+++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 87 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI----------------- 87 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------
Confidence 3445555555555566666666555554432 2345555555555555555555555555544
Q ss_pred CCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CH---hHHHH
Q 006457 186 VDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK---DA---VTWNS 259 (644)
Q Consensus 186 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~ 259 (644)
+.+ +.+..++..+..+|.+.|++++|.+.|+++... +. .+|..
T Consensus 88 ------------------------------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 88 ------------------------------QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp ------------------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ------------------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 332 234556666677777777777777777766332 22 44444
Q ss_pred HH------------HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 260 II------------AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 260 li------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
++ ..+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...+..+.+.. +.+..+
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 43 3377777888888888777621 23456667777777777788888888777777654 445677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAM------------IAGYGMHCRAREALDLFYKMIKAGVRPN-- 390 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 390 (644)
+..+...|.+.|++++|...|+++.. | +...+..+ ...|...|++++|+..|+++.+. .|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 77788888888888888888877653 3 33344444 77788888888888888888874 344
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 006457 391 ---YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSL 465 (644)
Q Consensus 391 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 465 (644)
...+..+..++.+.|++++|...++.+... .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 346777788888888888888888887552 2335788888888888888888888888876 45554 4455555
Q ss_pred HHH------------HHhcC-----ChhHHHHHHHH-hhccCCCCch----------hHHHHHHHHhhcCCchH
Q 006457 466 LGA------------CRIHK-----NVDLGEIAAKK-LFELEPNNCG----------YHVLLSNIYANAGRWED 511 (644)
Q Consensus 466 l~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 511 (644)
..+ |...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 422 33333 56778888886 6777776432 34445555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-20 Score=197.79 Aligned_cols=442 Identities=9% Similarity=0.008 Sum_probs=319.6
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVD--KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
...+..+...+.+.|++++|...|+++.. +.++.+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 46788899999999999999999998753 2377899999999999999999999999999865 23567788888999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 159 (644)
...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 2322 222344555566678899988887664 1223344555666777777777
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
++..+.... ...+....+...+....... .-......|++
T Consensus 179 ~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~a~~~~ 218 (537)
T 3fp2_A 179 EVSSVNTSS--------------NYDTAYALLSDALQRLYSAT--------------------------DEGYLVANDLL 218 (537)
T ss_dssp HHHTSCCCC--------------SSCSSHHHHHHHHHHHHTCS--------------------------HHHHHHHHHHH
T ss_pred HHHHHhhcc--------------ccccHHHHHHHHHHHHHHhh--------------------------hhhhHHHHHHH
Confidence 665554421 12222222221111111000 00111123467
Q ss_pred HHHHHHHhcCCCC---C-------HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 240 DVSRKVFDGMIEK---D-------AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 240 ~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
++|..+|+++.+. + ..+|..+...+...|++++|+..|++.. . ..|+..++..+...+...|+++.|
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI-N--LHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCHHHH
Confidence 7777777776332 2 2356667778889999999999999988 3 356677888888888999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+..
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998875 45677888999999999999999999998763 356789999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC----ChhHHHHHHHHHhhc----------CCHHHHHHHHHh
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP----GVEHYGCMVDLLGRA----------GKLKEAYDLIEG 452 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~ 452 (644)
+.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...|++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 44567888889999999999999999999865321111 223345556777787 999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 453 M-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 453 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+ ...| +..+|..+...+...|++++|...+++++++.|+++.....
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7 2333 57789999999999999999999999999999987665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-17 Score=168.91 Aligned_cols=302 Identities=9% Similarity=-0.021 Sum_probs=190.0
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHH
Q 006457 189 VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYA 265 (644)
Q Consensus 189 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 265 (644)
..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344445555556666666666666665543 3344555566666666666666666665552 124455666666666
Q ss_pred HCCChhHHHHHHHHhHHcCCCCC---C-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006457 266 QNGLAAEALDVFDQMVKSTDVKC---N-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 266 ~~g~~~~A~~~~~~m~~~~~~~p---~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 341 (644)
..|++++|+..|++.. ...| + ...+..+... .. ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 6666666666666655 2233 1 1111111000 00 00111234566777777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006457 342 DLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG 418 (644)
Q Consensus 342 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (644)
++|.+.|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777776542 355667777777777777777777777777642 3456677777777777777777777777775
Q ss_pred hhcCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHH
Q 006457 419 HEFNIEPG-VEHYG------------CMVDLLGRAGKLKEAYDLIEGM-KVKAD-F----VVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 419 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~ 479 (644)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 42 232 22222 2366688888888888888876 22333 2 23445667888888999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..++++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998888888888888899999999999999988888875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=167.18 Aligned_cols=289 Identities=10% Similarity=0.017 Sum_probs=207.7
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK------DAVTWNSI 260 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l 260 (644)
+..++..+...+...|+++.|...+..+++.. +.+...+..+...|.+.|++++|...|+++... +...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 46677788888999999999999999998874 446788999999999999999999999998443 23344433
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
...+. ...+......+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 115 ~~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 115 VKADE------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 21100 0011223334445555555555555555543 3345566667777777777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHccC
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFV------------SVLSACSHAG 405 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------~ll~a~~~~g 405 (644)
+++|...|++..+ .+...|..+...|...|++++|...|++..+.. +.+...+. .+...+...|
T Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777777776553 355677777777888888888888888877642 22222222 2356688899
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-h----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 406 LVQEGWHWLNTMGHEFNIEPG-V----EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
++++|...++.+... .|+ . ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|
T Consensus 249 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 249 RYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999988663 233 2 33556788999999999999999877 3344 677999999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
...++++++++|+++..+..+..++..
T Consensus 326 ~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 326 IQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999999998888888776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-17 Score=162.41 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=218.8
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 219 FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
.+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+..++++.+. .+.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 345666677777777788888888888877632 24556666777778888888888888887622 2334566777
Q ss_pred HHHHHHccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC
Q 006457 296 VLLAIAHLG-VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 296 ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 371 (644)
+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 777777777 7888888888877654 34566777888888888888888888887653 345677778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-------CCCChhHHHHHHHHHhhcCCHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN-------IEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 444 (644)
+++|++.|++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999888753 44567888888888899999999999888865321 1334678889999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH-hhcCCc
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY-ANAGRW 509 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 509 (644)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999876 2223 5678888999999999999999999999999999999999999888 455554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-18 Score=167.03 Aligned_cols=344 Identities=13% Similarity=0.080 Sum_probs=160.8
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~ 199 (644)
+.|++++|.++++++.. | .+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++.
T Consensus 15 ~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------------------~D~~~y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------------------DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------------------CCHHHHHHHHHHHH
Confidence 67889999999999965 5 48999999999999999999999652 57789999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (644)
..|++++|...+...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp --------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988877764 45678899999999999999999988864 6778999999999999999999999997
Q ss_pred hHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH
Q 006457 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSW 359 (644)
Q Consensus 280 m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (644)
+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-.
T Consensus 148 a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l 210 (449)
T 1b89_A 148 V----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL 210 (449)
T ss_dssp T----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH
T ss_pred h----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH
Confidence 7 26899999999999999999999887 378899999999999999999987776654 444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHhhhcCCCC------ChhHHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH--AGLVQEGWHWLNTMGHEFNIEP------GVEHYG 431 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~ 431 (644)
..++..|.+.|++++|+.+++...... +--...|+-+.-++++ .+++.+.++.|. ...+++| +..+|.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHH
Confidence 568899999999999999999987543 3334455555555554 445555555544 3346666 577899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
-++-.|..-++++.|...+-+-+ |+..--..+.....+-.+.+.--++..-.++..|. ....|..++...=+.+.
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHH
Confidence 99999999999999988765542 23233333344444555555444443333333332 33333334433333333
Q ss_pred HHHHH
Q 006457 512 VERTR 516 (644)
Q Consensus 512 a~~~~ 516 (644)
+.+++
T Consensus 362 ~v~~~ 366 (449)
T 1b89_A 362 AVNYF 366 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-17 Score=160.87 Aligned_cols=345 Identities=11% Similarity=0.096 Sum_probs=130.9
Q ss_pred HhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAH 96 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (644)
-+.|++++|.+.+++++.+ .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~---~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP---AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678899999999999654 4899999999999999999999975 357889999999999999999999988
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCC
Q 006457 97 QQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGG 176 (644)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 176 (644)
...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-------- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHTT--------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh--------
Confidence 887774 45678899999999999999999988853 777899999999999999999999998752
Q ss_pred CCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH
Q 006457 177 ASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVT 256 (644)
Q Consensus 177 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 256 (644)
.|..|++.+.+.|++++|.+.+.++ .++.+
T Consensus 150 ------------------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~ 179 (449)
T 1b89_A 150 ------------------------------------------------NFGRLASTLVHLGEYQAAVDGARKA--NSTRT 179 (449)
T ss_dssp ------------------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHH
T ss_pred ------------------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc--CCchh
Confidence 3555666666666666666666666 25666
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
|..++.+|...|+++.|......+ .+.|+. ...++..|.+.|.++++..+++...... +-....|+-|.-+|+
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLHI----VVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTTT----TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH----HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 666666666666666664433221 122222 3345556666666666666666655443 344555555555555
Q ss_pred h--cCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccC
Q 006457 337 K--CGQVDLARKAFNQMKE--------KNVRSWTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 337 ~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g 405 (644)
+ .+++.+..+.|..-.. .+...|..+...|...++++.|... |.+. ...-+...|.-++.--....
T Consensus 253 ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 253 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp TTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTH
T ss_pred hcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHH
Confidence 4 3455566666553321 2456788888888888888887763 4442 11123344433332222222
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 406 LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
-+-+|..++- . -.| ...+-|+.++...=+...+.++|++.
T Consensus 330 lyYkai~fyl---~---~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 330 LYYRAIQFYL---E---FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHH---H---HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHHH---h---cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 2223333222 1 122 23455555555555555555555555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-15 Score=161.37 Aligned_cols=395 Identities=10% Similarity=0.026 Sum_probs=250.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCcc
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVF 185 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 185 (644)
+...|..++. +.+.|++++|..+|+++... +.+...|..++..+.+.|++++|..+|++.. . ..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral------------~--~~ 76 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL------------M--KV 76 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------------T--TC
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------h--cC
Confidence 4445555554 24455555555555555444 2234445555555555555555555555543 1 12
Q ss_pred CCHhhHHHHHHH-hhcCCCchHHHH----HHHHHHHh-CCCC-CccHHHHHHHHHHh---------cCCHHHHHHHHhcC
Q 006457 186 VDSVAIASVLSA-CSRVTVNGVTEG----AHGFVIKR-GFDS-EVGVGNTLIDAYAR---------GGHVDVSRKVFDGM 249 (644)
Q Consensus 186 p~~~t~~~ll~~-~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 249 (644)
|+...+...+.. ....|+.+.+.+ +++..++. |..| +..+|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 343333333321 122344444333 44444332 4433 34556666665544 57778888888776
Q ss_pred CC-CC---HhHHHHHHHHH-------------HHCCChhHHHHHHHHhHH-----cC---CCCCCh--------hhHHHH
Q 006457 250 IE-KD---AVTWNSIIAIY-------------AQNGLAAEALDVFDQMVK-----ST---DVKCNA--------VTLSAV 296 (644)
Q Consensus 250 ~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~~-----~~---~~~p~~--------~t~~~l 296 (644)
.. |+ ...|....... ...+++.+|..++..+.. .. .++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 43 21 12333222210 123456677776665210 11 134442 233333
Q ss_pred HHHHHc----cccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC-
Q 006457 297 LLAIAH----LGVL----RLGKCIHDQVIKMDLEESVIVGTSIIDMYCK-------CGQVD-------LARKAFNQMKE- 353 (644)
Q Consensus 297 l~a~~~----~~~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~- 353 (644)
+..... .++. +.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 322221 1222 36677888888763 5567788888888876 69987 89999998764
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-h
Q 006457 354 --K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-Y-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-V 427 (644)
Q Consensus 354 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 427 (644)
| +...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|...+..+.+.|++++|..+|+...+ ..|. .
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~ 390 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRH 390 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Confidence 3 567899999999999999999999999998 4564 2 4788888888899999999999999965 2333 3
Q ss_pred hHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch----hHHHHH
Q 006457 428 EHYGCMVDL-LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG----YHVLLS 500 (644)
Q Consensus 428 ~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~ 500 (644)
..|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+++++++..|.++. .+...+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 334333322 34689999999999976 3334 5789999999999999999999999999998776654 676777
Q ss_pred HHHhhcCCchHHHHHHHHHhhC
Q 006457 501 NIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
......|+.+.+.++.+++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788899999999999988753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=158.08 Aligned_cols=264 Identities=10% Similarity=0.022 Sum_probs=227.4
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006457 252 KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI 331 (644)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 331 (644)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 356677788889999999999999999997332 3445566677888899999999999999999875 4567788899
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006457 332 IDMYCKCG-QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV 407 (644)
Q Consensus 332 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (644)
...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 356789999999999999999999999999864 33456777788999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChh
Q 006457 408 QEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-----------VKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 408 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
++|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++- ...+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999955 233457889999999999999999999998761 1334678999999999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-17 Score=163.56 Aligned_cols=281 Identities=8% Similarity=-0.051 Sum_probs=218.7
Q ss_pred HHhcCCHHHHHH-HHhcCCC---C----CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 233 YARGGHVDVSRK-VFDGMIE---K----DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 233 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
|.-.|++++|.. .|++... . +...|..+...+...|++++|+..|+++. .. .+.+..++..+...+...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~-~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQ-DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HS-CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHCc
Confidence 344578888888 7776522 1 34567788888999999999999999887 32 2446677888888888999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHH---------------HHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTA---------------MIAGY 366 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~ 366 (644)
+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999888875 45677888889999999999999999987763 2 2222221 13334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999999864221 4788999999999999999999999998663 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-----------chhHHHHHHHHhhcCCchHH
Q 006457 446 AYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-----------CGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 446 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 512 (644)
|.+.|+++ ...| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999986 3334 57789999999999999999999999999998887 78999999999999999999
Q ss_pred HHHHHH
Q 006457 513 ERTRSL 518 (644)
Q Consensus 513 ~~~~~~ 518 (644)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-15 Score=159.26 Aligned_cols=352 Identities=9% Similarity=0.014 Sum_probs=240.2
Q ss_pred CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHh----CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH
Q 006457 121 CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQ----NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS 196 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~ 196 (644)
.+++++|...|++..+. .+..++..|...|.. .+++++|+..|++.. ..+ +...+..+-.
T Consensus 56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~------------~~~---~~~a~~~Lg~ 119 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA------------LKG---LPQAQQNLGV 119 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------------HTT---CHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------------HCC---CHHHHHHHHH
Confidence 44455555554443321 233444444444444 445555555555443 211 2223333333
Q ss_pred Hhhc----CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHH-
Q 006457 197 ACSR----VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQ- 266 (644)
Q Consensus 197 ~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 266 (644)
.+.. .++.+.|.+.+....+.| ++..+..|..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 120 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 120 MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRG 196 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 3333 445555555555555543 44556666777766 6778888888877633 467777778777877
Q ss_pred ---CCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 006457 267 ---NGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK-- 337 (644)
Q Consensus 267 ---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-- 337 (644)
.+++++|++.|++.. ..+ +...+..+...+.. .++.++|...++...+.+ +...+..|..+|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 788888888888876 433 45566666666654 678888888888887754 34566667777777
Q ss_pred --cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---C
Q 006457 338 --CGQVDLARKAFNQMKE-KNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG---L 406 (644)
Q Consensus 338 --~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~ 406 (644)
.++.++|...|++..+ .+...+..+...|... ++.++|+.+|++..+.| +...+..+...+...| +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 8899999999988765 3566777888888877 89999999999998865 3455666666666656 7
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLG 478 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 478 (644)
+++|.++|++..+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...+.. .+|.++|
T Consensus 347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 88999999998652 467788888888888 89999999999887333467788888888887 8999999
Q ss_pred HHHHHHhhccCCC---CchhHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPN---NCGYHVLLSNIYAN 505 (644)
Q Consensus 479 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 505 (644)
...++++.+.+|+ ++.....|+.++..
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999854 66666666655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-14 Score=159.39 Aligned_cols=382 Identities=11% Similarity=0.066 Sum_probs=294.3
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFG--FHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLT 149 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 149 (644)
|+.-....++++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+...+.+.... .+ ...+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHH
Confidence 44445677888999999999999999998432 113446667777777776 55666666665543 22 455778
Q ss_pred HHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHH
Q 006457 150 GYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTL 229 (644)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 229 (644)
.+...|.+++|..+|++.. -.......++. ..+++++|.++...+ .++.+|..+
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----------------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqL 1111 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----------------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQL 1111 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----------------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHH
Confidence 8889999999999999852 11122233332 567788887777643 357889999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 230 IDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
..++.+.|++++|.+.|.+. .|...|..++.++.+.|++++|++.|...+ ... +++...+.++.+|++.++++..
T Consensus 1112 AKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHHHHHHhhcCHHHH
Confidence 99999999999999999775 678888899999999999999999998876 333 4443444588999999988864
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
..+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 4443 2 345566777999999999999999999986 48999999999999999999999976 3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLG 467 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 467 (644)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 668999999999999999999876543 3456777889999999999999999999765 44443 335655555
Q ss_pred HHHh--cCChhHHHHHHHHhhccCC-----CCchhHHHHHHHHhhcCCchHHHH
Q 006457 468 ACRI--HKNVDLGEIAAKKLFELEP-----NNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 468 ~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
++.+ -++..++.+.|..-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5554 4577788888887777766 667889999999999999999985
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-15 Score=160.48 Aligned_cols=402 Identities=9% Similarity=0.008 Sum_probs=268.5
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGY 151 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 151 (644)
|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++.....|++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 45566666666666666542 34455666777777777777777777777666555666666655422
Q ss_pred -HhCCChhHHHH----HHHHhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhc---------CCCchHHHHHHHHHHH
Q 006457 152 -VQNDNAREALL----LFKEFLLEESECGGASENSDNVFVD-SVAIASVLSACSR---------VTVNGVTEGAHGFVIK 216 (644)
Q Consensus 152 -~~~g~~~~A~~----~~~~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 216 (644)
...|+.+.|.+ +|++... ..|..|+ ...|...+..... .|+++.+..++..+++
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~-----------~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALD-----------KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHH-----------HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHccchhhHHHHHHHHHHHHHH-----------HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 34455555544 5555441 2243443 3344444443322 5778889999988877
Q ss_pred hCCCCCccHHHHHHHHH-------------HhcCCHHHHHHHHhc-------CC------CCC--------HhHHHHHHH
Q 006457 217 RGFDSEVGVGNTLIDAY-------------ARGGHVDVSRKVFDG-------MI------EKD--------AVTWNSIIA 262 (644)
Q Consensus 217 ~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~ 262 (644)
.........|....... .+.++++.|..++.. +. .|+ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 21111123333322211 134567777766654 11 122 356766665
Q ss_pred HHHHCC----Ch----hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc-------cccHH-------HHHHHHHHHHHhC
Q 006457 263 IYAQNG----LA----AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH-------LGVLR-------LGKCIHDQVIKMD 320 (644)
Q Consensus 263 ~~~~~g----~~----~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~i~~~~~~~~ 320 (644)
....++ +. .+|+.+|++.... .+-+...|......+.+ .|+++ .|..+++..++.-
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 443332 22 4778899988732 23456667777766664 68877 8999999988733
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NV-RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS 396 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (644)
.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+.. +.+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence 455788999999999999999999999998763 3 33 479999999999999999999999998752 222333333
Q ss_pred HHH-HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 006457 397 VLS-ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKAD--FVVWGSLLGAC 469 (644)
Q Consensus 397 ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~ 469 (644)
... .+...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 222 2346899999999999987642 235789999999999999999999999986 22332 44899999999
Q ss_pred HhcCChhHHHHHHHHhhccCCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
..+|+.+.+..+.+++.+..|+
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999998885
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=160.13 Aligned_cols=261 Identities=8% Similarity=-0.077 Sum_probs=210.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
+...|..+...+.+.|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.+++.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4556888888999999999999999988732 24467788888888999999999999999988875 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEKN-------------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNYITFVSVL 398 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 398 (644)
..|...|++++|...|+++.+.+ ...+..+...|...|++++|++.|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999998876421 123344578899999999999999999986422 1588899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
..+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..+|..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999663 2346889999999999999999999999986 3344 5778999999999999999
Q ss_pred HHHHHHHHhhccCCC------------CchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 477 LGEIAAKKLFELEPN------------NCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
+|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998876 367889999999999999998887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-13 Score=149.77 Aligned_cols=279 Identities=12% Similarity=0.075 Sum_probs=146.6
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~ 199 (644)
..|++++|.++.+++. +..+|..+..++...|++++|++.|.+. -|...|..+..+|.
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------------------dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------DDPSSYMEVVQAAN 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------------------CChHHHHHHHHHHH
Confidence 4455555555555442 3445556666666666666666666442 24455555666666
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (644)
+.|+++.+.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|..
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 6666666666665555433 33333334666666666665433332 233444555555666666666666666655
Q ss_pred hHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH
Q 006457 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSW 359 (644)
Q Consensus 280 m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (644)
. ..|..+...+.+.|+++.|.+.++.. .+..+|..+-.+|...|++..|...... ...+...+
T Consensus 1221 A----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL 1283 (1630)
T 1xi4_A 1221 V----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL 1283 (1630)
T ss_pred h----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH
Confidence 3 14555666666666666666655544 2345555555555566666666555443 22233344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH--HccCCHHHHHHHHHHHhhhcCCCC------ChhHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSAC--SHAGLVQEGWHWLNTMGHEFNIEP------GVEHY 430 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~ 430 (644)
..++..|.+.|.+++|+.+++..... .|. ...|+-+...+ .+-+++.++.++|..- .+++| +...|
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccchHhHHHHHHHHH
Confidence 45666666666666666666555432 221 22332233333 3333444444444422 23333 34556
Q ss_pred HHHHHHHhhcCCHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~ 447 (644)
.-++-.|.+.|+++.|.
T Consensus 1359 ~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhcccHHHHH
Confidence 66666666666666665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=158.92 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=195.3
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAG 365 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (644)
+...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999876 56788899999999999999999999998763 467899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNY-----------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+.+.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3432 2233457788999999999999999976432223688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..|.+.|++++|.+.|+++ ...| +..+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2333 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-15 Score=142.58 Aligned_cols=270 Identities=9% Similarity=-0.040 Sum_probs=215.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL 306 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 306 (644)
.-....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence 345568999999999988755432 3455678899999999999876533 2456777888888899999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 307 RLGKCIHDQVIKMDL-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 307 ~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+.|.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999988774 44566777788999999999999999998 567789999999999999999999999999986
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 006457 386 GVRPNYITF---VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFV 460 (644)
Q Consensus 386 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 460 (644)
.|+.... ...+..+...|++++|..+|+++... .+.+...++.+..+|.+.|++++|.+.|+++ ...| +..
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3654311 12334445669999999999999774 4567889999999999999999999999986 3444 677
Q ss_pred HHHHHHHHHHhcCChhH-HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 461 VWGSLLGACRIHKNVDL-GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
+|..++..+...|+.++ +.+.++++++++|+++... +...+.+.++++..-
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 89999999999999875 6789999999999987543 345555666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-16 Score=157.97 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=203.5
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHH-HHHHhHHcCCCCC--ChhhHHHHHHHHHccccHHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALD-VFDQMVKSTDVKC--NAVTLSAVLLAIAHLGVLRLGKCIHD 314 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~ 314 (644)
.++.+...|+.+...+.. ++...|++++|++ .|.+......-.| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555555443322 3445588999998 8887651211122 35668888899999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006457 315 QVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY 391 (644)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (644)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 55778889999999999999999999998763 467899999999999999999999999999853 332
Q ss_pred H-HHHH---------------HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 006457 392 I-TFVS---------------VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K 454 (644)
Q Consensus 392 ~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 454 (644)
. .+.. .+..+...|++++|..+|+.+.+...-.++..++..+...|.+.|++++|.+.++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2111 233344889999999999999764222225889999999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334 57799999999999999999999999999999999999999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=160.70 Aligned_cols=370 Identities=11% Similarity=-0.007 Sum_probs=200.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----------CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCC
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR----------IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGG 176 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 176 (644)
....||.|...|...|+.++|++.|++..+. +....+|+.+...|...|++++|...+++...-....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~-- 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF-- 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc--
Confidence 3456777777777788888877777653211 2345678888888888888888888887764211100
Q ss_pred CCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc--CCHHHHHHHHhcCC--C-
Q 006457 177 ASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG--GHVDVSRKVFDGMI--E- 251 (644)
Q Consensus 177 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~--~- 251 (644)
.....++ ...++..+..++.+. +++++|...|++.. .
T Consensus 128 ----~~~~~~~----------------------------------~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 128 ----SSPYRIE----------------------------------SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp ----CCSSCCC----------------------------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred ----ccccchh----------------------------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 0000010 112233333233322 34555555555542 1
Q ss_pred CCHhHHHHHHHH---HHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCc
Q 006457 252 KDAVTWNSIIAI---YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEES 324 (644)
Q Consensus 252 ~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~ 324 (644)
.++..+..+..+ +...++.++|++.|++..+. -+.+..++..+...+.. .++.++|...++...+.. +.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~ 246 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGV 246 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSC
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccH
Confidence 233334333332 23345555566666555411 12223333333333322 234555666666555543 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGM-------------------HCRAREALDLFYKM 382 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m 382 (644)
..++..+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555566666666666666666665442 2 33344444444322 22356788888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh----HHHHHHH-HHhhcCCHHHHHHHHHhC-CCC
Q 006457 383 IKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE----HYGCMVD-LLGRAGKLKEAYDLIEGM-KVK 456 (644)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~ 456 (644)
.+.. +.+..++..+...+...|++++|...|++... +.|+.. .+..+.. .+...|++++|++.|++. .+.
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7753 33455677788889999999999999998855 233322 2333333 234678999999998875 566
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
|+...+... ...+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 403 ~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 403 QKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred cccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 665443322 3445677888889999999999999999999999999999999988766443333444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-14 Score=147.02 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=290.9
Q ss_pred CCeecHHHHHHHHHh----CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhc----CCCchHHHHH
Q 006457 139 RNIVSWTSMLTGYVQ----NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSR----VTVNGVTEGA 210 (644)
Q Consensus 139 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~ 210 (644)
.+..++..+...|.. .+++++|+..|++.. ..+ +...+..+-..+.. .++.+.|.+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~------------~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA------------EQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH------------HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 466677777777777 899999999999986 332 45566666666666 8899999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHH----CCChhHHHHHHHHhH
Q 006457 211 HGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQ----NGLAAEALDVFDQMV 281 (644)
Q Consensus 211 ~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 281 (644)
+....+.| ++..+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99998865 66778889999988 8899999999998744 367788889888988 889999999999997
Q ss_pred HcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 006457 282 KSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK----CGQVDLARKAFNQMKE 353 (644)
Q Consensus 282 ~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 353 (644)
..+ +...+..+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|...|++..+
T Consensus 179 -~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 179 -EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp -HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred -HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 443 66777778888877 899999999999999865 45677788888886 8899999999998765
Q ss_pred -CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhhcCC
Q 006457 354 -KNVRSWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA-----GLVQEGWHWLNTMGHEFNI 423 (644)
Q Consensus 354 -~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~ 423 (644)
.+...+..+...|.. .++.++|+++|++..+.| +...+..+...+... +++++|..+|+...+.
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 466778888888887 899999999999998765 445666677777776 8999999999998652
Q ss_pred CCChhHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhH
Q 006457 424 EPGVEHYGCMVDLLGRAG---KLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
.+...+..|..+|.+.| ++++|.+.|++.-...+...+..|...+.. .++.++|...++++.+.+ ++..+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 34567788888888767 889999999987434578899999999988 899999999999998865 56889
Q ss_pred HHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 497 VLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 497 ~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999987663
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=151.52 Aligned_cols=255 Identities=10% Similarity=-0.001 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
.+..+...+...|++++|..+|+++. ..+..+|..+...+...|++++|+..|+++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------- 82 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR-------------------- 82 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34445555555555555555555542 1244455555555555555555555555554
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH--------------HH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAM--------------IA 364 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~ 364 (644)
+.. +.+..++..+...|...|++++|.+.|+++.+ | +...+..+ ..
T Consensus 83 ----------------~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 83 ----------------MLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred ----------------hcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 332 22333444444445555555555555544332 1 11122222 22
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 006457 365 -GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 365 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 443 (644)
.+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3677888999999999998864 446788888999999999999999999998653 234578899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC------------CchhHHHHHHHHhhcCCc
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN------------NCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~ 509 (644)
++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|...|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999886 3333 5778999999999999999999999999999998 788999999999999999
Q ss_pred hHHHHHHHHH
Q 006457 510 EDVERTRSLM 519 (644)
Q Consensus 510 ~~a~~~~~~m 519 (644)
++|..+++..
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988644
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-17 Score=175.18 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=109.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMK-------EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
......+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456689999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGL-VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 394 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
|+++|.++++.|. .++|.++|++|.. .|+.||..+|++++....|.+-++...++...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999999887 4788899999966 49999999999998877776555555444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=145.00 Aligned_cols=246 Identities=9% Similarity=0.020 Sum_probs=202.4
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCCh--hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNA--VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC 338 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (644)
|+-....|++.+|+..++... ...|+. .....+..++...|+++.|...++. .-+|+..++..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 445667899999999988765 344554 3556678899999999999876643 2456778888999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006457 339 GQVDLARKAFNQMK----EK-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 339 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (644)
|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 456677788999999999999999987 46778888899999999999999999
Q ss_pred HHHHhhhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 414 LNTMGHEFNIEPGVEH---YGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 414 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
|+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999663 465321 233445555679999999999988 23457889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCchH-HHHHHHHHhhC
Q 006457 489 EPNNCGYHVLLSNIYANAGRWED-VERTRSLMKNR 522 (644)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 522 (644)
+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-17 Score=174.81 Aligned_cols=149 Identities=11% Similarity=0.077 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcC------CCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYV------DKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
.+||+||++|++.|++++|.++|++|. ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999998764 24799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCc-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC---CCCeecHHHHHHHHHhCC
Q 006457 81 KSCSALHDL-HSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR---IRNIVSWTSMLTGYVQND 155 (644)
Q Consensus 81 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g 155 (644)
.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+... .+.+.+-+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999998887765555555554444332 122445556667777665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-14 Score=141.32 Aligned_cols=257 Identities=11% Similarity=-0.005 Sum_probs=173.7
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAI 263 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 263 (644)
+...+......+...|+++.|..+++.+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44556677778889999999999999998875 4467888999999999999999999999873 3477889999999
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCCh-hhHHHH--------------HH-HHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCNA-VTLSAV--------------LL-AIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~l--------------l~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
|...|++++|++.|+++. .. .|+. ..+..+ .. .+...|++++|...+..+.+.. +.+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWL-LS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHH-HT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999997 32 2332 222222 11 2556677777777777776654 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 66666667777777777666665542 244566666666666666666666666666542 23455566666666666
Q ss_pred CCHHHHHHHHHHHhhhcCCCC-------------ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 405 GLVQEGWHWLNTMGHEFNIEP-------------GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
|++++|...++.+... .| +...|..+..+|.+.|++++|..++++
T Consensus 254 g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665432 12 244555555555556666655555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-13 Score=139.89 Aligned_cols=382 Identities=9% Similarity=-0.030 Sum_probs=223.5
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHh--------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-------
Q 006457 73 RSTFPCAIKSCSALHDLHSGKQAHQQAFIF--------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR------- 137 (644)
Q Consensus 73 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 137 (644)
...|+.+-..+...|+.++|.+.++..++. ..+....+|+.+...|...|++++|...+++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666777777777777666542 11223567888999999999999998888765321
Q ss_pred -CC-CeecHHHHHHHHHh--CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHH---hhcCCCchHHHH
Q 006457 138 -IR-NIVSWTSMLTGYVQ--NDNAREALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSA---CSRVTVNGVTEG 209 (644)
Q Consensus 138 -~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~---~~~~~~~~~a~~ 209 (644)
.+ ...+++.+..++.. .+++++|+..|++.. .+.|+.. .+..+..+ ....++.+.+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal--------------~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--------------EKKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--------------HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 11 23456655555554 457899999999976 2345433 33333222 445677788888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHH
Q 006457 210 AHGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVK 282 (644)
Q Consensus 210 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 282 (644)
.+...++.. +.+..++..+...+.. .|++++|.+.+++. ...+..++..+...|...|++++|++.|.+..+
T Consensus 197 ~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 197 PLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 888887764 3345566656555544 45678888888876 334677888899999999999999999998872
Q ss_pred cCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhh
Q 006457 283 STDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRS 358 (644)
Q Consensus 283 ~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 358 (644)
..|+ ..++..+...+...+....+ .. ...........+..+.|...|+... ..+..+
T Consensus 276 ---~~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 276 ---YIPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp ---HSTTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred ---hCCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 2343 44444444443221111100 00 0001111112234567777777654 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TFVSVLS-ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|+..|++..+ +.|+........
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~- 412 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK- 412 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH-
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH-
Confidence 9999999999999999999999998854333221 2222222 34578999999999998854 566543332222
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
..+.+++++. . .+.+..+|..+...+...|++++|++.++++++++|.+|.+..-++
T Consensus 413 --------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 --------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2333333332 2 2336679999999999999999999999999999998887766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-14 Score=133.63 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=143.9
Q ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhhHHHHHHHH
Q 006457 297 LLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K----N----VRSWTAMIAGY 366 (644)
Q Consensus 297 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~ 366 (644)
...+...|++++|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333334444444444444444433 3344444455555555555555555554432 1 1 35667777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|++.|++..+. .|+. ..+...|++++|...++.+.. ..| +...+..+...|.+.|++++
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHH
Confidence 7778888888888777764 3443 234556778888888887754 233 46677778888888888888
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 446 AYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 446 A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888876 22 2356788888888888899999999999999989988888899999999999999999988887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-14 Score=130.24 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=155.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888889999999999999998764 356788889999999999999999999998853 33567888888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006457 399 SACSHA-----------GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSL 465 (644)
Q Consensus 399 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 465 (644)
.++... |++++|+..|+...+ +.| +...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 999999999999865 345 4788899999999999999999999886 212678899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=132.30 Aligned_cols=234 Identities=9% Similarity=-0.079 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC--Cc----hhHH
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE--ES----VIVG 328 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~----~~~~ 328 (644)
..|..+...+...|++++|+..|++.. ... .+...+..+...+...|++++|...+..+.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456667777777777777777777776 333 56667777777777777777777777777664311 11 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
..+...|.+.|++++|...|++..+ ++ ...+...|++++|+..++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7788888888888888888887664 33 234666788889999999888742 2345577788888889999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
+++|...|+.+... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988663 2345788888999999999999999999876 2333 577888899999999999999999999
Q ss_pred hhccC------CCCchhHHHHHH
Q 006457 485 LFELE------PNNCGYHVLLSN 501 (644)
Q Consensus 485 ~~~~~------p~~~~~~~~l~~ 501 (644)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99988 777666665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=131.53 Aligned_cols=240 Identities=12% Similarity=-0.039 Sum_probs=176.8
Q ss_pred CCChhHHHHHHHHhHHcCCC-C--CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 006457 267 NGLAAEALDVFDQMVKSTDV-K--CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDL 343 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~-~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (644)
.|++++|+..|+++. .... . .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777777777776 3211 1 134556666677777777777777777777654 3456777888888888888888
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 006457 344 ARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHE 420 (644)
Q Consensus 344 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (644)
|...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887763 35778888999999999999999999999885 455444444555566779999999999887663
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 421 FNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 334444444 777788888889999998876 33332 568888999999999999999999999999998755
Q ss_pred hHHHHHHHHhhcCCchHHHHHH
Q 006457 495 YHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55678889999887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=129.31 Aligned_cols=247 Identities=12% Similarity=0.040 Sum_probs=143.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC--hhhHHHHHH
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN--AVTLSAVLL 298 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~ 298 (644)
.........+...|++++|...|++..+ .+..+|..+...|...|++++|++.|++.. ..+..|+ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 3445566677777777777777777622 245567777777777777777777777776 3221111 122556666
Q ss_pred HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHH-HHHHhcCCHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMI-AGYGMHCRARE 374 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~ 374 (644)
.+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+. ..|. .+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHH
Confidence 6666677777777776666654 33445566666666666666666666666553 2334455454 3333 335666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGL---VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
|++.|+++.+.. +.+...+..+..++...|+ +++|...++.+.+ +..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----------------------------~~~ 210 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE-----------------------------VCA 210 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH-----------------------------HHG
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH-----------------------------HHh
Confidence 666666555531 1123333334444433333 3334443333322 111
Q ss_pred hCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 452 GMKVKAD------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 452 ~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
. .|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....
T Consensus 211 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 P---GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp G---GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred c---ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 1 122 246677788888899999999999999999999988777776654443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=121.97 Aligned_cols=197 Identities=9% Similarity=-0.030 Sum_probs=160.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777888888888888888887653 356778888888889999999999999888763 34677788888888
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
...|++++|..+++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988855 23445 4677888888899999999999988876 2233 567888888889999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888888999999999999999999998887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=126.45 Aligned_cols=370 Identities=9% Similarity=0.011 Sum_probs=189.6
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHhhCCCCCCCeecHHHHHHHHHhCC-
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL---SDARKLFDEIPQRIRNIVSWTSMLTGYVQND- 155 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 155 (644)
...+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+ .+..++..|...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--CCHHHHHHHHHHHHhCCC
Confidence 334445566777777777776665 223333445555556666 777777777766 46666666666555544
Q ss_pred ----ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCc---hHHHHHHHHHHHhCCCCCccHHHH
Q 006457 156 ----NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVN---GVTEGAHGFVIKRGFDSEVGVGNT 228 (644)
Q Consensus 156 ----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ 228 (644)
++++|+..|++.. ..+... .+..+-..+...+.. ..+.+.+......| ++.....
T Consensus 85 ~~~~~~~~A~~~~~~Aa------------~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAF------------ANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp CCHHHHHHHHHHHHHHH------------HTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred CCCcCHHHHHHHHHHHH------------HCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 5667777777665 222111 222222222222211 12222232233333 2334444
Q ss_pred HHHHHHhcCC----HHHHHHHHhcCCCCCHhHHHHHHHHHHHCC---ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 229 LIDAYARGGH----VDVSRKVFDGMIEKDAVTWNSIIAIYAQNG---LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 229 li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
|...|...+. .+.+..+++.....++.++..|...|...| +.++|++.|
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~------------------------ 202 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQM------------------------ 202 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHH------------------------
Confidence 5555555442 333333344444444444444444444444 444444444
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCCHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC----GQVDLARKAFNQMKEKNVRSWTAMIAG-Y--GMHCRARE 374 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~ 374 (644)
....+.| +++...+..|..+|... +++++|...|++....+...+..|... | ...|++++
T Consensus 203 ------------~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 203 ------------EAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp ------------HHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred ------------HHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 4444444 22333333444555433 567777777776663345566666665 3 45778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAG-----LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKE 445 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 445 (644)
|+++|++..+.| +...+..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..++++
T Consensus 270 A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 270 MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 888888888766 4555555555555 44 8888888888773 4456677777777766 348888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHH--hhcCCchHHHHHHHHH
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY--ANAGRWEDVERTRSLM 519 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m 519 (644)
|...|++.-...+......|...|.. ..|.++|...++++.+..+.. ....+..+. ...++.++|.++.+.-
T Consensus 341 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 341 ALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88888876333345556666666653 458888888888888876543 333333332 2334566666666654
Q ss_pred h
Q 006457 520 K 520 (644)
Q Consensus 520 ~ 520 (644)
+
T Consensus 419 ~ 419 (452)
T 3e4b_A 419 L 419 (452)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-12 Score=118.49 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=138.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344556666677777777777777766542 345567777777777777777777777777653 3356667777777
Q ss_pred HHcc-CCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 401 CSHA-GLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 401 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
+... |++++|..+++.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 788888887777755 223333 566777777777788888887777765 2223 4667777777777888888
Q ss_pred HHHHHHHHhhccCC-CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEP-NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888777 7777777777777788888888887777754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=124.08 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 333344444444444444444444331 234455555566666666666666666666542 3345555666666666
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 66666666666666442 2234556666666666677777776666654 11 22455666677777777777777777
Q ss_pred HHHhhccCCCCchhHHHHHHH
Q 006457 482 AKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~ 502 (644)
++++++++|+++..+..+..+
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHccCcchHHHHHHHHHH
Confidence 777777777766665555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-12 Score=119.69 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|++++|...+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR---------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC----------
Confidence 567788888888888888888888887622 12244455555555555555555555555555432 12
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|..
T Consensus 104 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 ---------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444455555555555555555555555422233 33455555666666666666666
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...+++++++.|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666442 1224566666777777777777777777665 222 3455677777777888888888888888888888
Q ss_pred CCchhHH
Q 006457 491 NNCGYHV 497 (644)
Q Consensus 491 ~~~~~~~ 497 (644)
+++....
T Consensus 241 ~~~~~~~ 247 (252)
T 2ho1_A 241 GSLEYQE 247 (252)
T ss_dssp TSHHHHH
T ss_pred CCHHHHH
Confidence 8765443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-11 Score=118.03 Aligned_cols=225 Identities=9% Similarity=-0.059 Sum_probs=133.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVG 328 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~ 328 (644)
+..++..+...|...|++++|+..|++.. . +.+...+..+...+.. .+++++|...+....+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45556666666666777777777776665 3 2233445555555555 666666666666666554 44555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 329 TSIIDMYCK----CGQVDLARKAFNQMKE-KNVRSWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 329 ~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 556666666 6666666666665543 244556666666666 666777777777666654 3444555555
Q ss_pred HHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006457 400 ACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI 471 (644)
Q Consensus 400 a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 471 (644)
.+.. .+++++|..+|+...+. .+...+..+..+|.. .+++++|.+.|++.-...+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 5555 66666776666666442 234555556666666 66666666666654211234455555566655
Q ss_pred ----cCChhHHHHHHHHhhccCCC
Q 006457 472 ----HKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 472 ----~g~~~~a~~~~~~~~~~~p~ 491 (644)
.++.++|...++++.+++|+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-11 Score=117.94 Aligned_cols=224 Identities=11% Similarity=-0.053 Sum_probs=194.2
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK----CGQVDLARKAFNQMKE-KNVRSWTAMI 363 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 363 (644)
+..++..+...+...|++++|...+....+ +.+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456677788888899999999999999998 3456678889999999 9999999999998764 4677899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 364 AGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 364 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999662 3 5677888888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh--
Q 006457 436 LLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN-- 505 (644)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 505 (644)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987323467788888899988 9999999999999999877 5788999999999
Q ss_pred --cCCchHHHHHHHHHhhCCC
Q 006457 506 --AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 506 --~g~~~~a~~~~~~m~~~~~ 524 (644)
.|++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=123.65 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=155.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667788888999999999999998764 356788999999999999999999999999863 446788888999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 477 (644)
.+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999663 2346788999999999999999999999986 22 3367789999999999999999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-12 Score=131.53 Aligned_cols=311 Identities=9% Similarity=-0.002 Sum_probs=211.8
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH---HHHHHHHhcCCCCCHhHHHHHHHHHHHCC--
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV---DVSRKVFDGMIEKDAVTWNSIIAIYAQNG-- 268 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 268 (644)
+...+.+.|+++.|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566789999999999998887 344556677777788888 99999999987767777877877666665
Q ss_pred ---ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---
Q 006457 269 ---LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRL---GKCIHDQVIKMDLEESVIVGTSIIDMYCKCG--- 339 (644)
Q Consensus 269 ---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~---a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--- 339 (644)
++++|+..|++.. ..|.. ..+..+...+...+..+. +.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa-~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAF-ANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHH-HCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999998 54432 255666666665554333 344444444444 3455667778888777
Q ss_pred -CHHHHHHHHHhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHH
Q 006457 340 -QVDLARKAFNQMKEKNVRSWTAMIAGYGMHC---RAREALDLFYKMIKAGVRPNYITFVSVLSACSHA----GLVQEGW 411 (644)
Q Consensus 340 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~ 411 (644)
..+.+..++......+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4556666777777777778899999999999 8999999999999887 55666555666666554 7899999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHH-H--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHH
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDL-L--GRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHK-----NVDLGEIAAK 483 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~ 483 (644)
.+|+... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|. .| |.++|...++
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9999883 3456677777777 4 568899999999988733346777777777776 55 9999999999
Q ss_pred HhhccCCCCchhHHHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 484 KLFELEPNNCGYHVLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
++. |.++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 988 8888999999988877 3489999999999887764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=115.11 Aligned_cols=173 Identities=13% Similarity=-0.018 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMH-CRAREALDLFYKMIKAGVRPN-YITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 399 (644)
...+..+...|...|++++|.+.|++..+ .+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 33445555555666666666666655432 2455666677777777 777777777777776323333 456677777
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK--ADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~ 476 (644)
++...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 778888888888888877552 2234677778888888888888888888776 222 35666777777778889999
Q ss_pred HHHHHHHHhhccCCCCchhHHHH
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
.+...++.+.+..|+++.....+
T Consensus 200 ~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 200 AAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999998888888887665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-12 Score=126.84 Aligned_cols=246 Identities=10% Similarity=0.035 Sum_probs=195.5
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcccc-HHHHHHHHHHHHHhCCCCchhHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV-LRLGKCIHDQVIKMDLEESVIVGTSI 331 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~l 331 (644)
+..+|+.+...+...|++++|++.|++..+. -+-+...|..+..++...|+ +++|...++.+++.. +.+...|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3456777888888888889999888888721 13345677778888888886 888988888888876 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCH
Q 006457 332 IDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH-AGLV 407 (644)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~ 407 (644)
..+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999998763 467889999999999999999999999999863 3367788888888888 6665
Q ss_pred HHH-----HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 006457 408 QEG-----WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG--KLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHK----- 473 (644)
Q Consensus 408 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g----- 473 (644)
++| +..|+..+. +.| +...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 477887755 445 4778888899999888 6899999988875455 4567788888887764
Q ss_pred ---C-hhHHHHHHHHh-hccCCCCchhHHHHHHHHhh
Q 006457 474 ---N-VDLGEIAAKKL-FELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 474 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 505 (644)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999998888888776543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-12 Score=115.68 Aligned_cols=190 Identities=11% Similarity=-0.009 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY 335 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 335 (644)
.|..+...+.+.|++++|+..|++.. . --+.+...+..+..++...|++++|...++..++.. +.+...+..+...|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al-~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL-K-ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-T-TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 33444444444444444444444443 1 111223333333444444444444444444444332 22333444444444
Q ss_pred Hhc-----------CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 336 CKC-----------GQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 336 ~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 566666666655442 2 34556666666666666666666666666654 5555666666666
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...|++++|+..|+.+.+ ..| +...+..+..++.+.|++++|.+.|++.
T Consensus 162 ~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666644 223 3555666666666666666666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=117.49 Aligned_cols=227 Identities=8% Similarity=-0.063 Sum_probs=179.6
Q ss_pred HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHH
Q 006457 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--KD----AVTWNSII 261 (644)
Q Consensus 188 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li 261 (644)
...+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566677889999999999999998764 34566899999999999999999999998743 22 33588999
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCC
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII-DMYCKCGQ 340 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~ 340 (644)
..|...|++++|++.|++..+. .+.+..++..+...+...|++++|...++..++.. +.+...+..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999832 23356788899999999999999999999988763 45566777777 4444 569
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006457 341 VDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCR---AREALDLFYKMIKAG-VRPN------YITFVSVLSACSHAGLV 407 (644)
Q Consensus 341 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~ 407 (644)
+++|.+.|++..+ | +...|..+...+...|+ +++|...|++..+.. -.|+ ...+..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998764 3 46778888888888888 888999999988642 1233 14666777788888888
Q ss_pred HHHHHHHHHHhh
Q 006457 408 QEGWHWLNTMGH 419 (644)
Q Consensus 408 ~~a~~~~~~~~~ 419 (644)
++|..+|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888854
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-12 Score=130.61 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCR--------------------AREALD 377 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 377 (644)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555554432 11 2355555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHH
Q 006457 378 LFYKMIKA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 378 ~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 448 (644)
.+++.... +..| ...++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655431 1111 1235556666666777777777777666432111111 2356666777777777777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHH
Q 006457 449 LIEGM----KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 449 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76654 11111 3456666677777777777777777777654322 4466677777777788888877
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-10 Score=122.11 Aligned_cols=423 Identities=9% Similarity=-0.014 Sum_probs=284.9
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---hHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE---LSDARK 129 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 129 (644)
...+.+..|++....+ +-|..+|..++..+...+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666666666655 347888999999998889999999999999987 46677888888888888888 999999
Q ss_pred HHhhCCCCC---CCeecHHHHHHHHHhCCCh--------hHHHHHHHHhHhhhhccCCCCCCCCCc-cCCH-hhHHHHHH
Q 006457 130 LFDEIPQRI---RNIVSWTSMLTGYVQNDNA--------REALLLFKEFLLEESECGGASENSDNV-FVDS-VAIASVLS 196 (644)
Q Consensus 130 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~~~~~~~~~~~-~p~~-~t~~~ll~ 196 (644)
+|++..... |++..|..-+.-..+.++. +...++|+.... ..|. .|+. ..|...+.
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~-----------~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD-----------KCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH-----------HTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-----------HhCcccccchHHHHHHHH
Confidence 999988774 7888888877655554433 234467776552 3455 5543 34444444
Q ss_pred Hhhc---------CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh-------------cCCHHHHHHHHhcC-----
Q 006457 197 ACSR---------VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR-------------GGHVDVSRKVFDGM----- 249 (644)
Q Consensus 197 ~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~----- 249 (644)
-... .+..+.++.+|..++......-..+|......-.. ..+++.|...+.++
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3221 22356677888777642111112233221111101 11234455554331
Q ss_pred --C----C----------C--C------HhHHHHHHHHHHHCCC-------hhHHHHHHHHhHHcCCCCCChhhHHHHHH
Q 006457 250 --I----E----------K--D------AVTWNSIIAIYAQNGL-------AAEALDVFDQMVKSTDVKCNAVTLSAVLL 298 (644)
Q Consensus 250 --~----~----------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 298 (644)
. . | + ...|...+.---.++. .+.+..+|++.... .+-+...|.....
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMAN 351 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 1 0 0 0 2356666654333321 23456678887632 3345666666677
Q ss_pred HHHccccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC---------
Q 006457 299 AIAHLGVLRLGK-CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------------KN--------- 355 (644)
Q Consensus 299 a~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~--------- 355 (644)
-+...|+.+.|. .+++..+.. ++.+...+-.++...-+.|+++.|.++|+++.. |+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 777788888896 999999874 356677788889999999999999999998763 21
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 356 ---VRSWTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSHA-GLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 356 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
...|...+....+.|..+.|..+|.+..+. + .+....|......-.+. ++++.|..+|+...+. .+-+...+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w 507 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHH
Confidence 235888888888889999999999999875 2 11223333222222333 5589999999999875 33456677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 431 GCMVDLLGRAGKLKEAYDLIEGM-KVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 88899889999999999999986 2223 3468999999999999999999999999999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=133.95 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=156.8
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC-h----hhHHHHHHHHHccccHHHHHHHHHHHHHh----C-CCCchhHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN-A----VTLSAVLLAIAHLGVLRLGKCIHDQVIKM----D-LEESVIVGT 329 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~ 329 (644)
+...+...|++++|+..|++..+. .|+ . ..+..+...+...|+++.|...++++.+. + .+....++.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334444455555555555444411 111 1 23444444444455555555554444332 1 012234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---------NVRSWTAMIAGYGMHCR-----------------AREALDLFYKMI 383 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~ 383 (644)
.+...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666666666666666554321 12356666677777777 777777777654
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 006457 384 KA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK 454 (644)
Q Consensus 384 ~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 454 (644)
+. +-.| ...++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++.-
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 32 1112 2236666777778888888888888777542111111 2367777888888888888888887651
Q ss_pred -C---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 455 -V---KA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 455 -~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 14567777888888899999999988888764332 3478888999999999999999988876
Q ss_pred h
Q 006457 521 N 521 (644)
Q Consensus 521 ~ 521 (644)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=126.07 Aligned_cols=260 Identities=12% Similarity=0.011 Sum_probs=166.8
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC-----hhhHHHHHHHHHccccHHHHHHHHHHHHHh----CCC-CchhHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN-----AVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLE-ESVIVGT 329 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~ 329 (644)
....+...|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+..+.+. +.. ....++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455555555555555555421 122 133444445555555555555555544321 111 1234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCR--------------------AREALDLFY 380 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 380 (644)
.+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777777666442 12 2366677777777777 778887777
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 381 KMIKA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 381 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
+.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76532 2122 1335667777788888888888888877542111111 3367788888889999999988887
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHHHHH
Q 006457 452 GMK----VKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 452 ~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
+.- ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 651 1112 4467778888899999999999999998865432 3477889999999999999999999
Q ss_pred HHhhC
Q 006457 518 LMKNR 522 (644)
Q Consensus 518 ~m~~~ 522 (644)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=110.47 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=123.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 44567777777777777778888777777642 235566777777777888888888877777542 233456666677
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877765 2233 5667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=124.91 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 291 VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ-VDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
..+..+...+...|++++|...++.+++.. +.+..+|+.+...|.+.|+ +++|...|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888999999999999999876 5567888999999999997 9999999998874 4678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh-cCCHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR-AGKLK 444 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 444 (644)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.| +...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 34678899999999999999999999999976 345 57889999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC--------
Q 006457 445 EA-----YDLIEGM-KVKA-DFVVWGSLLGACRIHK--NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG-------- 507 (644)
Q Consensus 445 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 507 (644)
+| ++.|++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4667665 3445 5678999999998888 689999999998 899999999999999999875
Q ss_pred -CchHHHHHHHHH-hh
Q 006457 508 -RWEDVERTRSLM-KN 521 (644)
Q Consensus 508 -~~~~a~~~~~~m-~~ 521 (644)
.+++|.++++.+ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 53
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-12 Score=120.68 Aligned_cols=218 Identities=11% Similarity=-0.013 Sum_probs=179.7
Q ss_pred HccccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHH
Q 006457 301 AHLGVLRLGKCIHDQVIKMDL---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 374 (644)
...|++++|...++.+.+... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999988642 22467788899999999999999999998763 467899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM- 453 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 453 (644)
|++.|+++.+.. +.+...+..+...+...|++++|..+|+.+.+ +.|+.......+..+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999863 34678888999999999999999999999965 3565555555566667889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC----CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 454 K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN----NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 454 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
. .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 233444444 777778888899999999999988764 36889999999999999999999999998643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-12 Score=129.93 Aligned_cols=290 Identities=11% Similarity=-0.030 Sum_probs=168.7
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----CHh
Q 006457 189 VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE-----K----DAV 255 (644)
Q Consensus 189 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~ 255 (644)
..+...-..+...|+++.|...+..+++.. +.+ ..++..+...|...|++++|...|++... . ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444444555566666666666555542 111 13445555555555555555555554311 0 123
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY 335 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 335 (644)
+|..+...|...|++++|+..+.+..+...-.++. .....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHH
Confidence 44455555555555555555555543110000110 00122444455555
Q ss_pred HhcCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 336 CKCGQ--------------------VDLARKAFNQMKE-----K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 336 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...|+ +++|...|++..+ . ...+|..+...|...|++++|+..+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55555 5555555544321 1 12356777777777888888888887766421
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---
Q 006457 387 V-RPN----YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK--- 454 (644)
Q Consensus 387 ~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 454 (644)
. .++ ..++..+...+...|++++|..+++.......-.++ ..++..+...|.+.|++++|.+.+++.-
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236677777788888888888888877532111111 4567778888888899988888887651
Q ss_pred -CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCch
Q 006457 455 -VKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 455 -~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 510 (644)
..++ ..++..+...+...|++++|...+++++++. |....++..++.+|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1112 4577788888899999999999999988763 333567778888888877664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=135.15 Aligned_cols=209 Identities=7% Similarity=-0.066 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV-DLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
++.+...+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555443322 34666777778888888888 888888887653 3567888889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc--------CCHH
Q 006457 382 MIKAGVRPNYITFVSVLSACSHA---------GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA--------GKLK 444 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 444 (644)
..+. .|+...+..+...+... |++++|...|+++.+. -+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8874 57778888888888888 9999999999998652 233578888899999888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 445 EAYDLIEGM-KVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 445 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999887 3345 77899999999999999999999999999999999999999999999999999998765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=125.87 Aligned_cols=263 Identities=9% Similarity=0.004 Sum_probs=159.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHc---CC-CCCChhhHHHHH
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKS---TD-VKCNAVTLSAVL 297 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~~~t~~~ll 297 (644)
+...+...|++++|...|+++.+ .+. .+|..+...|...|++++|+..|++..+. .+ .+....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34444555555555555554411 121 24445555555555555555555544311 01 011223444445
Q ss_pred HHHHccccHHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC--
Q 006457 298 LAIAHLGVLRLGKCIHDQVIKM----D-LEESVIVGTSIIDMYCKCGQ-----------------VDLARKAFNQMKE-- 353 (644)
Q Consensus 298 ~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-- 353 (644)
..+...|++++|...+..+.+. + .+....++..+...|...|+ +++|.+.|++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432 1 11223355566666666677 6666666655432
Q ss_pred ---C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 006457 354 ---K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN----YITFVSVLSACSHAGLVQEGWHWLNTMGHEF 421 (644)
Q Consensus 354 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (644)
. ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 224677778888888888888888888765311 011 2367778888888999999999888775421
Q ss_pred CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 422 NIEP----GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-V---KAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 422 ~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.-.. ....+..+...|.+.|++++|.+.+++.- . .++ ..++..+...+...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 15677888889999999999999888761 1 112 3477778889999999999999999998876
Q ss_pred CC
Q 006457 490 PN 491 (644)
Q Consensus 490 p~ 491 (644)
+.
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=119.20 Aligned_cols=268 Identities=11% Similarity=-0.012 Sum_probs=149.2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCHhHHHHHH
Q 006457 195 LSACSRVTVNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE---------KDAVTWNSII 261 (644)
Q Consensus 195 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li 261 (644)
-..+...|+++.|...++.+.+.. +.+ ..++..+...|...|++++|.+.|++... ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344566677777777777776653 112 24566666677777777777776665421 1234566666
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHcccc--------------------HHHHHHHHHHHH
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGV--------------------LRLGKCIHDQVI 317 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~--------------------~~~a~~i~~~~~ 317 (644)
..|...|++++|+..+.+..+...-.++ ..++..+...+...|+ ++.|...+....
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6667777777777666665411111111 1234444444444455 444444443332
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK--NVRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-N 390 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 390 (644)
+. +.....+ ...++..+...|...|++++|+..+++..+. +..+ .
T Consensus 171 ~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 171 SL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp HH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 21 0000000 1234555666666666666666666665532 1111 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD---- 458 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~---- 458 (644)
..++..+...+...|++++|..+++.......-.++ ..++..+...|...|++++|...+++.- ..++
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 225566666677777777777777766432111111 4566677777778888888877776651 0111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
..++..+...+...|++++|...+++++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 336677778888888888888888888877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-09 Score=112.67 Aligned_cols=418 Identities=9% Similarity=-0.029 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCC---hhHHHHHHHH
Q 006457 91 SGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDN---AREALLLFKE 166 (644)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 166 (644)
.-...++..+... +-|...|..++..+.+.+.++.+..+|+.+... +.....|...+..-.+.+. .+.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444556666655 568999999999999999999999999988776 3466778888888888888 9999999999
Q ss_pred hHhhhhccCCCCCCCCC-ccCCHhhHHHHHHHhhcCCCc--------hHHHHHHHHHHH-hCC-CCC-ccHHHHHHHHHH
Q 006457 167 FLLEESECGGASENSDN-VFVDSVAIASVLSACSRVTVN--------GVTEGAHGFVIK-RGF-DSE-VGVGNTLIDAYA 234 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~ 234 (644)
.. ... ..|+...|..-+.-..+.++. +...++|+.++. .|. .++ ..+|...+....
T Consensus 129 al------------~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 129 CL------------SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp HT------------CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HH------------HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 85 222 247777776666544443332 345577777655 466 554 467888777654
Q ss_pred h---------cCCHHHHHHHHhcCCC-C--CH-hHHH---HHHHHHH----------HCCChhHHHHHHHHhHHc-CCC-
Q 006457 235 R---------GGHVDVSRKVFDGMIE-K--DA-VTWN---SIIAIYA----------QNGLAAEALDVFDQMVKS-TDV- 286 (644)
Q Consensus 235 ~---------~g~~~~A~~~~~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~-~~~- 286 (644)
. .++++.+.++|++... | +. .+|. .+...+. ...+++.|...+.++.+. .++
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 3 3457889999998754 2 11 2332 2222110 011234455555543210 111
Q ss_pred ---C-----------C--C---h---hhHHHHHHHHHccc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 287 ---K-----------C--N---A---VTLSAVLLAIAHLG-------VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 287 ---~-----------p--~---~---~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
+ | + . ..|...+.---..+ ..+.+..+|++++..- +.+..+|-..+..+..
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 1 1 0 0 12222222211111 1334567788887753 5577888888888888
Q ss_pred cCCHHHHH-HHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HH
Q 006457 338 CGQVDLAR-KAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV---------RPN------------YI 392 (644)
Q Consensus 338 ~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~ 392 (644)
.|+.++|. ++|++... | +...|-..+...-+.|++++|.++|+++.+... .|+ ..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 99988763 3 556688888888999999999999999986410 142 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG-KLKEAYDLIEGM--KVKADFVVWGSLLGAC 469 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~ 469 (644)
.|...+....+.|.++.|..+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 67777888888899999999999996631 1123445554444445554 589999999876 2233667888888888
Q ss_pred HhcCChhHHHHHHHHhhccCCC---CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPN---NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
...|+.+.|..+|+++++..|+ ....+...+..-.+.|..+.+.++.+++.+.-
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8899999999999999998873 44567777777788999999999999998754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.8e-11 Score=105.62 Aligned_cols=167 Identities=16% Similarity=0.037 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788889999999999999999988763 366788899999999999999999999988763 3456677777788
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999988652 2345778889999999999999999999876 3344 567899999999999999999
Q ss_pred HHHHHHhhccCCCCc
Q 006457 479 EIAAKKLFELEPNNC 493 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~ 493 (644)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-10 Score=110.15 Aligned_cols=218 Identities=9% Similarity=0.031 Sum_probs=142.9
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHH-------ccccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIA-------HLGVL-------RLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
++|+.+|++.... .+-+...|......+. ..|++ ++|..++++.++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666666521 1223344444444433 23554 677777777766322344556777777777
Q ss_pred hcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHH
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVR-SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC-SHAGLVQEGW 411 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 411 (644)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77888888887777654 3 233 67777777778888888888888887643 23334444333322 2368888888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKA--DFVVWGSLLGACRIHKNVDLGEIAAKKL 485 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (644)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888876532 2356778888888888888888888888761 244 3557888888888888888888888888
Q ss_pred hccCCCCc
Q 006457 486 FELEPNNC 493 (644)
Q Consensus 486 ~~~~p~~~ 493 (644)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88888754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.1e-12 Score=122.39 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=121.4
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcC------CCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHh------C
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKST------DVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM------D 320 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~ 320 (644)
+..+|..+...|...|++++|+..|+++.+.. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567778888888888888888888876210 11222334455555555556666666655555442 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 006457 321 L-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GVRP-NYI 392 (644)
Q Consensus 321 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 392 (644)
- +.... +|..+...|...|++++|++.|+++.+. +-.| ...
T Consensus 106 ~~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 11223 3444444555555555555555554432 1112 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC----------CC
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEF-----NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK----------VK 456 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~ 456 (644)
.+..+...+...|++++|..+++.+.... +..| ....+..+...|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44455555555566666665555553310 0011 23345555566666666666666655441 01
Q ss_pred CC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 AD-------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+. ...+..+...+...+.+.++...++++....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 112222223334455666667777777777777778888888888888888888888887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-11 Score=121.29 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN-----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NY 391 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 391 (644)
++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +-.+ ..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 334444444455555444444443321 11 124555555566666666666665555432 1001 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----C--CCC-HH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHE---FNI-EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK----V--KAD-FV 460 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--~p~-~~ 460 (644)
.++..+...+...|++++|...|+....- .+. +....++..+...|.+.|++++|.+.+++.- . .|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 24555555666666666666666655431 112 1124455566666666666666666665541 0 111 11
Q ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 461 VWGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 461 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+..+...+...|+ .++|...+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23444555556666 55555555554 2233344566677777777777777777777664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-10 Score=109.19 Aligned_cols=209 Identities=10% Similarity=0.061 Sum_probs=144.1
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHH-------HCCCh-------hHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYA-------QNGLA-------AEALDVFDQMVKSTDVKCN-AVTLSAVLLAIA 301 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~ 301 (644)
++|..+|++... .++..|..++..+. +.|++ ++|..+|++.. . .+.|+ ...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~-~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-S-TLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-T-TTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-H-HhCcccHHHHHHHHHHHH
Confidence 455566655532 35666666666554 34665 77777777776 2 13443 346667777777
Q ss_pred ccccHHHHHHHHHHHHHhCCCCc-hh-HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHH-HhcCCHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEES-VI-VGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGY-GMHCRAREA 375 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A 375 (644)
..|+++.|..+++.+++.. |+ .. +|..++..+.+.|++++|..+|++..+. +...|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777888888877777643 32 32 6777888888888888888888876642 233343332221 236889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
..+|++..+.. +-+...|..++..+...|++++|..+|++......+.| ....|..++..+.+.|++++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888752 33567788888888889999999999999876323455 3668888888888999999999888876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=117.74 Aligned_cols=292 Identities=9% Similarity=-0.031 Sum_probs=209.6
Q ss_pred hhcCCCchHHHHHHHHHHHh--CCCCCc--cHHHHHHHHHH--hcCCHHHHH-----------HHHhcCCCC--CHh---
Q 006457 198 CSRVTVNGVTEGAHGFVIKR--GFDSEV--GVGNTLIDAYA--RGGHVDVSR-----------KVFDGMIEK--DAV--- 255 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~li~~~~--~~g~~~~A~-----------~~~~~~~~~--~~~--- 255 (644)
+.+.++++.|.++.+.+.+. .+..|. ..|-.++..-. -.+.++.+. +.++.+... +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678999999999998664 232333 33344433211 122333333 444444211 111
Q ss_pred ---HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHccccHHHHHHHHHHHHHhC--CC----
Q 006457 256 ---TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--LE---- 322 (644)
Q Consensus 256 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~---- 322 (644)
.|......+...|++++|+..|++..+...-.+| ..++..+...+...|+++.|...+....+.- ..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2223556778999999999999998722111233 3578888889999999999999999987642 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GV-R 388 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 388 (644)
....+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245778889999999999999999987653 22 247888999999999999999999998862 33 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HH
Q 006457 389 PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPGVEHYGCMVDLLGRAGK---LKEAYDLIEGMKVKADF-VV 461 (644)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~ 461 (644)
....++..+...+...|++++|..+++....-. +-+.....+..+...|...|+ +++|+.++++.+..|+. ..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345678889999999999999999999885421 111223346778889999999 99999999998655443 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+..+...+...|++++|...+++++++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7778899999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-11 Score=128.28 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCM 433 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 433 (644)
..+|+.|...|.+.|++++|++.|++.++. .| +...+..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 456777777788888888888888887774 44 456777777888888888888888887754 3453 6778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888775 3444 466888888888889999999999999999999988899999999999999999
Q ss_pred HHHHHHHHhh
Q 006457 512 VERTRSLMKN 521 (644)
Q Consensus 512 a~~~~~~m~~ 521 (644)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=103.35 Aligned_cols=160 Identities=14% Similarity=0.008 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444555566666666666666666543 234455555555556666666666666555432 2234444444444555
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
.|++++|..+++.+... .+.+...|..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555555555544331 12234455555566666666666666666
Q ss_pred HhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 484 KLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=119.15 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=144.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHc------C
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIE--------K---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKS------T 284 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 284 (644)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++..+. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999998743 2 3457888999999999999999999998732 1
Q ss_pred CCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 006457 285 DVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM------DL-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVR 357 (644)
Q Consensus 285 ~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (644)
..+....++..+...+...|++++|...+..+.+. +. +....++..+...|...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------- 166 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------------------- 166 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-------------------
Confidence 12233556777888888889999998888887653 11 11223344444444444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc------CCC
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKA------GVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEF------NIE 424 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 424 (644)
|++++|+++|+++.+. +..|+ ..++..+...+...|++++|..+++.+.... ...
T Consensus 167 ------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 167 ------------GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444555444444432 11221 2344455555555555555555555554210 011
Q ss_pred CC-------hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 425 PG-------VEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 425 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+. ...+..+...+...+.+.+|...+.... ..| +..+|..+..++...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333344455566666666666653 223 3457888889999999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-09 Score=104.67 Aligned_cols=260 Identities=13% Similarity=0.031 Sum_probs=162.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChh----hHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCc----hhHHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAV----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDL-EES----VIVGTSI 331 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~----~~~~~~l 331 (644)
...+...|++++|...+++.. ...-..+.. ++..+...+...|+++.|...+.+..+... ..+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334555666666666666655 221111111 333444555566677777666666554210 011 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 006457 332 IDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR--P--NYITFVS 396 (644)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 396 (644)
...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6677778888888777766542 1 1234566777788888888888888887764221 1 2345667
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG-----CMVDLLGRAGKLKEAYDLIEGMK-VKAD-----FVVWGSL 465 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 465 (644)
+...+...|++++|...++....-..-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888888754211111111121 23345778899999998888762 1221 2245667
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCC------CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPN------NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...+...|++++|...++++++..+. ....+..++.+|...|+.++|...++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888889999999999888775432 123677788889999999999998888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-10 Score=99.47 Aligned_cols=159 Identities=18% Similarity=0.084 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788889999999999999887654 45677888999999999999999999998763 4677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 456777777888888888888888888887552 122334444444444444444444
Q ss_pred HHHHHh
Q 006457 447 YDLIEG 452 (644)
Q Consensus 447 ~~~~~~ 452 (644)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-10 Score=103.37 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=152.4
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHH
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIA 364 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 364 (644)
.|...+......+...|++++|...+...++...+++...+..+...|.+.|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777778888889999999999999998877546667777788899999999999999988764 3 4567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNY-------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMV 434 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 434 (644)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+.+. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999988753 2234 456777778888899999999999884 35565 56777777
Q ss_pred HHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 435 DLLGRAGKL--KEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 435 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777666543 3322221 12333333332 33456689999999999999999988877776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-10 Score=111.40 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN-----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NY 391 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 391 (644)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. |-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334444445555555554444443321 11 224455555555555555555555554431 1111 12
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KV--KAD-FVV 461 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 461 (644)
.++..+...+...|++++|...|+....-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 244455555556666666666665553310 11112444555566666666666666665544 11 111 122
Q ss_pred HHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 462 WGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 462 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..+...+...++ ..+|...+++. ...|.....+..++..|...|++++|.+.+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333344444455 44555555442 1223333455667777777777777777766654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-10 Score=117.56 Aligned_cols=178 Identities=10% Similarity=-0.031 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRA-REALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
++++.+.+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3677899999999999999 99999999999863 33578899999999999999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChhH
Q 006457 417 MGHEFNIEPGVEHYGCMVDLLGRA---------GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH--------KNVDL 477 (644)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~~ 477 (644)
+.+ +.|+...+..+...|... |++++|++.|++. ...| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 954 568888999999999999 9999999999987 3344 577999999999988 99999
Q ss_pred HHHHHHHhhccCC---CCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEP---NNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-09 Score=104.22 Aligned_cols=305 Identities=11% Similarity=-0.022 Sum_probs=213.0
Q ss_pred ccCCHhhHHHHHHHh--hcCCCchHHHHHHHHHHHhC--CCCC--ccHHHHHHHHH-----HhcCCHH---------HHH
Q 006457 184 VFVDSVAIASVLSAC--SRVTVNGVTEGAHGFVIKRG--FDSE--VGVGNTLIDAY-----ARGGHVD---------VSR 243 (644)
Q Consensus 184 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~~-----~~~g~~~---------~A~ 243 (644)
+.|+...-..+-..+ ...++++.|.++.+.+.+.. +..| ...|-.|+..- ....... +..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344444444454554 67899999999999886642 3233 33344444431 1111111 333
Q ss_pred HHHhcCCCC-C-H---hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHccccHHHHHHHHH
Q 006457 244 KVFDGMIEK-D-A---VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGVLRLGKCIHD 314 (644)
Q Consensus 244 ~~~~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~ 314 (644)
+-.+....+ + . ..|......+...|++++|+..|++..+...-.++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333322222 1 1 12333455678899999999999998722222233 3467788888999999999999999
Q ss_pred HHHHhC--C---C-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 315 QVIKMD--L---E-ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 315 ~~~~~~--~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
...+.. . . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 887631 1 1 1245678899999999999999999987653 22 347888999999999999999999
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCC---HHHHHHH
Q 006457 380 YKMIKA----GVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI---EPGVEHYGCMVDLLGRAGK---LKEAYDL 449 (644)
Q Consensus 380 ~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~ 449 (644)
++..+. +.+....++..+...+.+.|++++|..+++....-..- +.....+..+...|...|+ +++|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998761 22334667888899999999999999999998664322 2224456777788888898 9999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 450 IEGMKVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 450 ~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
+++.+..|+. ..+..+...+...|++++|...++++++.
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9987654443 35667889999999999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-10 Score=103.56 Aligned_cols=184 Identities=13% Similarity=-0.062 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSA 400 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 400 (644)
..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+. .| +...+..+...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444445555555555555555554331 33444444555555555555555555555542 22 23344444455
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPG-V-------EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGA 468 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 468 (644)
+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555554331 221 2 23444444444455555555554443 23333 2233333333
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 322 22333344444443332222222 12233444777777777664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-08 Score=102.53 Aligned_cols=259 Identities=10% Similarity=0.001 Sum_probs=154.6
Q ss_pred HHHHhcCCHHHHHHHHhcC----CCCCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh----hhHHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGM----IEKDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA----VTLSAVLL 298 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~ 298 (644)
..+...|++++|...+++. +..+. .+++.+...+...|++++|.+.+++......-.++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444566666666665543 11122 134455556666677777766666654211111111 22344555
Q ss_pred HHHccccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhhHHHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKM----DLE--E-SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K------NVRSWTAMI 363 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 363 (644)
.+...|++++|...++...+. +.. | ....+..+...|...|++++|...+++... + ...+|..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566667777777776666542 211 2 233455677777788888888887776432 1 124566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHHHhhhcCCCC---ChhHHHHHH
Q 006457 364 AGYGMHCRAREALDLFYKMIKAGVRPN--YITFV----SVLSACSHAGLVQEGWHWLNTMGHEFNIEP---GVEHYGCMV 434 (644)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li 434 (644)
..+...|++++|...+++.....-.++ ..... ..+..+...|++++|..+++..... ...+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHH
Confidence 788888888888888888765321211 11111 2233466888999998888877431 1111 123456777
Q ss_pred HHHhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-------KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
..+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...+++++++.+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 8888889999988888765 1111222 555566777888999999999998887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-10 Score=107.00 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GV 387 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 387 (644)
..++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455556666666666666666554431 1 2345666667777777777777777766643 11
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC------
Q 006457 388 RP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF-----NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK------ 454 (644)
Q Consensus 388 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 454 (644)
.| ...++..+...+...|++++|..+++.+.... +-.| ....+..+...|.+.|++++|.+.++++-
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 34466667777777777777777777775420 1122 24566777777888888888877776551
Q ss_pred ----CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 455 ----VKAD-FVVWGSLLGACRIHKN------VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 455 ----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..+. ...|..+.......+. +..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333222 23333333333344566677888899999999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=116.45 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=132.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVL 398 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 398 (644)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .| +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3456778888888888888888888887653 35678888888899999999999999988875 45 467888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 475 (644)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...|..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 888999999999999988855 345 4778888999999999999999998876 4455 466888888999999999
Q ss_pred hHHHHHHHHhhccCC
Q 006457 476 DLGEIAAKKLFELEP 490 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p 490 (644)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.1e-09 Score=100.78 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 375 (644)
++++|...+... ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888877765 4467788999999988876643 12 45889999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHH
Q 006457 376 LDLFYKMIKAGV---RPN--YITFVSVLSACSHA-GLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 376 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 445 (644)
+..|++..+... .+. ..++..+...+... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998875311 111 35788888899996 9999999999988652111111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh-----HHHHHHHHh--hcCCc
Q 006457 446 AYDLIEGM-KVKAD---F-----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY-----HVLLSNIYA--NAGRW 509 (644)
Q Consensus 446 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 509 (644)
|++.|++. ...|+ . ..|..+..++...|+++.|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999976 22232 1 156777788899999999999999999999976543 344555554 56778
Q ss_pred hHHHHHHHHHh
Q 006457 510 EDVERTRSLMK 520 (644)
Q Consensus 510 ~~a~~~~~~m~ 520 (644)
++|.+.++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888775543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=98.17 Aligned_cols=171 Identities=8% Similarity=-0.089 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC----
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMH-CRAREALDLFYKMIKAGVR-PN---- 390 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 390 (644)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3455566666666666666666655432 11 24677788888886 9999999999887763110 01
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-----EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV---- 460 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---- 460 (644)
..++..+...+...|++++|+..|+.+.....-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3467788888999999999999999886521111121 15677788888999999999999886 3445322
Q ss_pred --HHHHHHHHHH--hcCChhHHHHHHHHhhccCCCCchhH
Q 006457 461 --VWGSLLGACR--IHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 461 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
.+..++.++. ..+++++|...++++.+++|......
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2344555554 45678888888888888888654333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=93.77 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=136.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-N---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN-YITF 394 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 394 (644)
.+...+-.+...+.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555667777778888888888887764 2 2 34667777777888888888888888777421 112 3445
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006457 395 VSVLSACSH--------AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSL 465 (644)
Q Consensus 395 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 465 (644)
..+..++.. .|++++|...|+.+.+. .|+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 77777787777777553 232 22222221111110111 1124567
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHhhc----------CCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYANA----------GRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
...+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++.+.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 788899999999999999999999985 45788899999877 89999999999987643
Q ss_pred EEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 006457 533 VELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQE 568 (644)
Q Consensus 533 ~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~ 568 (644)
..+|...+....+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2245556666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-08 Score=95.18 Aligned_cols=162 Identities=11% Similarity=-0.006 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GVRP 389 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 389 (644)
++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444555555555555555555554331 1 1345666777777777777777777777653 1123
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc------CCCC-ChhHHHHHHHHHhhc------CCHHHHHHHHHhCC-
Q 006457 390 -NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF------NIEP-GVEHYGCMVDLLGRA------GKLKEAYDLIEGMK- 454 (644)
Q Consensus 390 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~------g~~~~A~~~~~~~~- 454 (644)
...++..+...+...|++++|..+++.+.+.. ...+ ....+..+...+... ..+.++...++...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 24567777778888888888888887775420 1122 233333333333332 23445555555553
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
..| ...++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3447788889999999999999999998775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=90.04 Aligned_cols=243 Identities=8% Similarity=-0.010 Sum_probs=161.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEK-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
.-..-.|.+..++.-...+... ....-.-+.++|...|++... ..-.|....+..+.. |...+ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 3344578888877766655332 223333455778888876531 112233323332222 22222 5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
...+++.+..+ .++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666666554 444555567888899999999999999987433 345677788899999999999999999987
Q ss_pred cCCCC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 006457 385 AGVRP-----NYITFVSVLSAC--SHAG--LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK- 454 (644)
Q Consensus 385 ~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 454 (644)
. .| +..+...+..++ ...| ++++|..+|+++.. -.|+......+..++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 67 366666777663 3334 89999999999854 34553333444558889999999999987642
Q ss_pred C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 455 V----------KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 455 ~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
. .| |+.+...++......|+ .|.++++++.+..|+++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 24 45566566656666676 78899999999999986543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=82.93 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++.+... .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCC------------
Confidence 34555555666666666666666665542 223444555555555555555555555555331 111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 438 GRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 233344444444445555555555555555555555555555555555555555555555
Q ss_pred HHh
Q 006457 518 LMK 520 (644)
Q Consensus 518 ~m~ 520 (644)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-08 Score=94.91 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=141.6
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhh
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEES---VIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----VRS 358 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 358 (644)
.+...+-.....+...|++++|...++.+++.. +.+ ...+..+...|.+.|++++|...|++..+ |+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667777788889999999999999998865 223 56778899999999999999999998864 32 346
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 359 WTAMIAGYGM--------HCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 359 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
+..+..++.. .|++++|+..|++..+. .|+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 3432 222111 111111110 0122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHhhccCCCCch
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIH----------KNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888899999999988876 22333 34666677777655 8889999999999999999864
Q ss_pred h---HHHHHHHHhhcCCch
Q 006457 495 Y---HVLLSNIYANAGRWE 510 (644)
Q Consensus 495 ~---~~~l~~~~~~~g~~~ 510 (644)
. ...+..++...|+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 344444444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=93.51 Aligned_cols=140 Identities=7% Similarity=-0.083 Sum_probs=101.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC
Q 006457 364 AGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG 441 (644)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 441 (644)
..+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556677777777776654 2332 33455667777778888888888877754 334 4677788888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 442 KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEI-AAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
++++|...|++. ...| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888775 3445 46688888888999998876655 4689999999999999999988888775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=106.22 Aligned_cols=168 Identities=7% Similarity=-0.120 Sum_probs=134.4
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 336 CKCGQVDLARKAFNQMK-----------EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888775 2355678888888999999999999999988753 33567788888888899
Q ss_pred CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998865 345 47778888889999999998 8888876 3344 566888888999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988899999998877665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-08 Score=83.35 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.|..+...+.+.|++++|.++++++ . .+.+...|..+...+...|++++|...++++++..|.++..+..++.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 5667788888889999998888876 2 2236678888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 006457 507 GRWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~ 523 (644)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-07 Score=88.55 Aligned_cols=179 Identities=9% Similarity=-0.035 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY----ITFV 395 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 395 (644)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445566677888888888888887763 32 2357777788888888888888888888743 322 1333
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 006457 396 SVLSACSH------------------AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVK 456 (644)
Q Consensus 396 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (644)
.+..++.. .|++++|...|+.+.+. .|+ ...+.++..+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34566666666665432 232 1122111110 0000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc---hhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC---GYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455677899999999999999999999876 5688999999999999999999999987664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=90.70 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=165.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
|+-..-.|.+..++.-...+. ...+ ......+.+++...|+.... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc-
Confidence 344455788888887433331 2222 23334455667666665431 11123333333333 333332
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777877653 455566788889999999999999999987655322 455777888899999999999999999
Q ss_pred HhhhcCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 417 MGHEFNIEP-----GVEHYGCMVDL--LGRAG--KLKEAYDLIEGMK-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 417 ~~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
|.+ ..| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++...|++++|+..++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 954 456 35555556555 33334 9999999999984 33553344455568899999999999999888
Q ss_pred cc----------CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 487 EL----------EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 487 ~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+. +|+++.+...++.+....|+ +|.+++.++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 86 58899999888888888897 8999999998643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.8e-08 Score=93.96 Aligned_cols=174 Identities=8% Similarity=-0.070 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC
Q 006457 343 LARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422 (644)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (644)
.....+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33344444443445566677778888899999999999988753 33566788888889999999999999988844
Q ss_pred CCCChhHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC--chhHH
Q 006457 423 IEPGVEHYGCMV-DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN--CGYHV 497 (644)
Q Consensus 423 ~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 497 (644)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...+.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 356544333332 3366778888888888775 3334 57788999999999999999999999999999988 78899
Q ss_pred HHHHHHhhcCCchHHHHHHHHHh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-06 Score=87.05 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=96.5
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHH
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLA-RKAFN 349 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 349 (644)
+.+..+|+++. . ..+.+...|...+.-+...|+++.|..++++.++. +.+...+. .|+...+.++. ..+.+
T Consensus 196 ~Rv~~~ye~al-~-~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYIL-D-SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHH-H-HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHH-H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 34566777776 2 22344555666666666777888888888888777 33333332 22222111111 11111
Q ss_pred hcC--C-------C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHH
Q 006457 350 QMK--E-------K---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS-HAGLVQEGWHWLNT 416 (644)
Q Consensus 350 ~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~ 416 (644)
... . + ....|-..+....+.+..+.|..+|++. +.. .++...|......-. ..++++.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 0 0 1123444444444455566666666665 211 122223321111111 12246666666666
Q ss_pred HhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 417 MGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
..+.++ -+...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..
T Consensus 346 al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 655332 123344445555556666666666666652 134455555555555555555555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-07 Score=84.16 Aligned_cols=162 Identities=7% Similarity=-0.126 Sum_probs=117.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHhhhcCCCCChhH
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG----LVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
.+..++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+..... -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355666667777777777777777777777655 44555555555665 5 778888888877441 25666
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHH
Q 006457 430 YGCMVDLLGR----AGKLKEAYDLIEGMK-VKAD---FVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 430 ~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
+..|..+|.. .+++++|.+.|++.- ..|. +..+..|...|.. .++.++|...++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6777777766 778888888888763 3332 6777777777777 77888999999998888 66677888
Q ss_pred HHHHHHhhc-C-----CchHHHHHHHHHhhCCC
Q 006457 498 LLSNIYANA-G-----RWEDVERTRSLMKNRRL 524 (644)
Q Consensus 498 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 524 (644)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888754 3 88999999988877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.3e-08 Score=85.61 Aligned_cols=155 Identities=7% Similarity=-0.036 Sum_probs=89.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-Hhhc
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL-LGRA 440 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 440 (644)
+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.. ..|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhh
Confidence 3344444455555555555444321 11333444444455555555555555554422 12222222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC--chhHHHHHHHHhhcCCchHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN--CGYHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222345555544 2334 46788888888888999999999999999988864 558888899999999999998888
Q ss_pred HHHh
Q 006457 517 SLMK 520 (644)
Q Consensus 517 ~~m~ 520 (644)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=88.19 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=100.5
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKN 474 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 474 (644)
...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999998873 34453 455667899999999999999999987 4445 67799999999999999
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH-HHHHhh
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT-RSLMKN 521 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 521 (644)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988775 466654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-08 Score=82.74 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 422 NIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 422 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45553 667788888999999999999999987 3444 67799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-07 Score=99.65 Aligned_cols=189 Identities=11% Similarity=-0.017 Sum_probs=146.8
Q ss_pred HccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc
Q 006457 301 AHLGVLRLGKCIHDQVI--------KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 369 (644)
...|++++|...++.+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 32 245667888889999999999999999998774 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
|++++|++.|++..+.. +-+...+..+..++...|++++ ...|+++.+ +.| +...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999853 3356778888999999999999 999999865 344 57789999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHhhccCCCCchh
Q 006457 449 LIEGM-KVKAD-FVVWGSLLGACRIHKN-----VDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 449 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.|+++ ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99987 46676 4577777777766555 344445555555555554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.8e-08 Score=102.34 Aligned_cols=160 Identities=8% Similarity=-0.062 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998774 356789999999999999999999999998853 335778889999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHhhccC
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH---KNVDLGEIAAKKLFELE 489 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 489 (644)
++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999663 2335788999999999999999999999986 3334 567888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 006457 490 PNNCGYHVLLS 500 (644)
Q Consensus 490 p~~~~~~~~l~ 500 (644)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-07 Score=89.70 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=150.5
Q ss_pred CCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887752211 11 0 11136677776666543 456778889888888
Q ss_pred HHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCCHHHHHH
Q 006457 347 AFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV---RPN--YITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 347 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876543 12 34788888899999999999999998765311 122 3567778888888 99999999
Q ss_pred HHHHHhhhcC---CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHH
Q 006457 413 WLNTMGHEFN---IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-V---KAD----FVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 413 ~~~~~~~~~~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
.|++...-.. -.+ ...++..+...|.+.|++++|++.|++.- . .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998864211 111 14678888999999999999999998761 1 112 2256666677778899999999
Q ss_pred HHHHhhccCCCCchh-----HHHHHHHHhhcCCchHHHH
Q 006457 481 AAKKLFELEPNNCGY-----HVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 514 (644)
.+++++ +.|..... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 98875432 33445544 5677666655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-07 Score=84.81 Aligned_cols=127 Identities=6% Similarity=-0.017 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR 439 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 439 (644)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ +.| +...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 37888999999999999999998853 33677888888899999999999999999865 345 47788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 440 AGK--LKEAYDLIEGMKVKADFV--VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 440 ~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|. .+.+...++... .|+.. .|..+..++...|++++|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 34433 44555666777899999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=99.61 Aligned_cols=147 Identities=9% Similarity=-0.078 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 44577888888999999999999999988764 35678888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA---GKLKEAYDLIEGM 453 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 453 (644)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988863 345678888888999999999999999988653 223577888888899888 9999999988876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-08 Score=82.56 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=86.9
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 422 NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 422 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4566777888899999999999999876 3334 67788899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-06 Score=79.60 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC-----
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ--EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK----- 442 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 442 (644)
+++++++++++++.+.. +-|...|..-.....+.|.++ +++++++.+... -.-|-..|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 34445555555554432 224444444444444444444 455555554331 11233334333333333333
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHhhccC---CCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 443 -LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV-DLGEIAAKKLFELE---PNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 443 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
++++++.++++ ...| |...|+-+...+...|+. +.....++++.+++ |.++.+...++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555443 1122 455666555555555542 23444555555554 55556666666666666666666666
Q ss_pred HHHHhh
Q 006457 516 RSLMKN 521 (644)
Q Consensus 516 ~~~m~~ 521 (644)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-06 Score=86.16 Aligned_cols=368 Identities=9% Similarity=-0.018 Sum_probs=205.0
Q ss_pred hcC-CchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCC-cHHHHH
Q 006457 18 KHS-TNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHD-LHSGKQ 94 (644)
Q Consensus 18 ~~~-~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~ 94 (644)
+.| +++.|+.+|+.+... |. |+++.+..+|++... ..|+...|..-++...+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 366666666665322 22 678888888888776 34677777777776665542 345667
Q ss_pred HHHHHHHh-CCCC-ChhHHHHHHHHHHh----CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHh---CCChhHHHHHHH
Q 006457 95 AHQQAFIF-GFHR-DVFVSSALIDMYSK----CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQ---NDNAREALLLFK 165 (644)
Q Consensus 95 ~~~~~~~~-g~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 165 (644)
+|+.++.. |..+ +..+|...+..+.. .|+++.+.++|++.... |. ..+..+-..|.. ......+..++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 77777764 4333 55677777766542 35677788888877553 21 112222222211 111122222222
Q ss_pred HhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcC--C-----
Q 006457 166 EFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGG--H----- 238 (644)
Q Consensus 166 ~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~----- 238 (644)
+.. +.+..|+.++..+.+.--..+...|...++.-...+ -
T Consensus 148 ~~~---------------------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 148 DTL---------------------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHH---------------------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HHh---------------------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 211 112223333332221100012223444333322110 0
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
.+.+..+|+++. ..+...|-..+.-+.+.|+.++|..+|.+.. .. |....+.. +++.....+. +++.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~---P~~~~l~~---~y~~~~e~~~---~~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM---SDGMFLSL---YYGLVMDEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH---CCSSHHHH---HHHHHTTCTH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC---CCcHHHHH---HHHhhcchhH---HHHH
Confidence 234555666653 2357788888888889999999999999988 33 55443322 1222111111 1222
Q ss_pred HHHhC---------C---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhHHHHHHHH-HhcCCHHHHHHHHH
Q 006457 316 VIKMD---------L---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--VRSWTAMIAGY-GMHCRAREALDLFY 380 (644)
Q Consensus 316 ~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~-~~~g~~~~A~~~~~ 380 (644)
+.+.- . .....+|...+..+.+.+.++.|+.+|++...|+ ...|-.....- ...++.+.|..+|+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 22210 0 1123456667777777889999999999884343 22332211111 12346999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 381 KMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 381 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...+.- +-+...+...+.-..+.|+.+.|..+|+.+. .....|...++.-.+.|+.+.+.++++++
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998753 2234445556666778899999999999872 25788888888888889999999888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=79.23 Aligned_cols=145 Identities=10% Similarity=-0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV 407 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (644)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33456667778888888888888777777778888888888888888888888877653 33556677777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 408 QEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 408 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++|...|+.+.+...-.+... +...| +...| ....|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777754211111000 00000 01222 23567777788888888888888888888
Q ss_pred ccCCCC
Q 006457 487 ELEPNN 492 (644)
Q Consensus 487 ~~~p~~ 492 (644)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-07 Score=86.43 Aligned_cols=163 Identities=11% Similarity=-0.024 Sum_probs=119.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC--CCC--hh
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-Y----ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI--EPG--VE 428 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 428 (644)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++.......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778888999999999888876432211 1 12334555677888999999999887542111 111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC------Cc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD-----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN------NC 493 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 493 (644)
+|+.+...|...|++++|...|+++- ..|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999887751 1222 257888889999999999999999999886432 15
Q ss_pred hhHHHHHHHHhhcCCchHH-HHHHHHHh
Q 006457 494 GYHVLLSNIYANAGRWEDV-ERTRSLMK 520 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 520 (644)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=78.07 Aligned_cols=94 Identities=6% Similarity=-0.004 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 428 EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555556666666666666666554 2223 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHhh
Q 006457 506 AGRWEDVERTRSLMKN 521 (644)
Q Consensus 506 ~g~~~~a~~~~~~m~~ 521 (644)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-06 Score=82.03 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=114.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHH
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAG-VRPNYI----TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGC 432 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 432 (644)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122321 2334556666777888888888888652111222 336788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-------V-KAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHV 497 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (644)
+...|...|++++|...|+++- . .|. ..++..+...|...|++++|...+++++++.+.. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888887651 1 111 2377888899999999999999999998865332 56889
Q ss_pred HHHHHHhhcCC-chHHHHHHHHHh
Q 006457 498 LLSNIYANAGR-WEDVERTRSLMK 520 (644)
Q Consensus 498 ~l~~~~~~~g~-~~~a~~~~~~m~ 520 (644)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599999888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-07 Score=82.28 Aligned_cols=125 Identities=11% Similarity=-0.006 Sum_probs=95.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 471 (644)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.|++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334455566677777777777655 2456677777777777777777777777765 22 2356678888888888
Q ss_pred cCChhHHHHHHHHhhccCCCCc----------------hhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNC----------------GYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.|++++|...+++++++.|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888877766 899999999999999999999999988654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=83.56 Aligned_cols=156 Identities=5% Similarity=-0.016 Sum_probs=74.5
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHH-HHHHHHHhcC
Q 006457 294 SAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWT-AMIAGYGMHC 370 (644)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g 370 (644)
..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+..... .....+...+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 333444444455555555555544433 23344455555566666666666666665543 3222111 1112244444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|...+
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 5555555555555532 223445555555555555565555555555442111111344555555555555555555444
Q ss_pred H
Q 006457 451 E 451 (644)
Q Consensus 451 ~ 451 (644)
+
T Consensus 279 r 279 (287)
T 3qou_A 279 R 279 (287)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-07 Score=83.09 Aligned_cols=184 Identities=16% Similarity=0.052 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE--SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNV----RSWTA 361 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 361 (644)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999999864322 235677789999999999999999999764 332 14555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcC
Q 006457 362 MIAGYGM------------------HCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422 (644)
Q Consensus 362 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (644)
+..++.. .|+.++|+..|+++.+. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 57899999999999874 45533 2211110 0 0111111
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 423 IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 423 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
......+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++++....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112235677889999999999999886 233432 46788889999999999999999999998887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.5e-07 Score=74.29 Aligned_cols=114 Identities=10% Similarity=0.011 Sum_probs=87.3
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006457 387 VRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWG 463 (644)
Q Consensus 387 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 463 (644)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34432 35566677777888888888888877542 2235677777888888888888888888775 3334 567889
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+..++...|++++|...++++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998888877664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-05 Score=75.16 Aligned_cols=224 Identities=8% Similarity=-0.016 Sum_probs=151.8
Q ss_pred hHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHHccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CC
Q 006457 271 AEALDVFDQMVKSTDVKCNA-VTLSAVLLAIAHLG--VLRLGKCIHDQVIKMDLEESVIVGTSIIDMY----CKC---GQ 340 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 340 (644)
++|++++..+. .+.|+. ..++.--..+...+ .++++...++.++... +.+..+|+.--..+ .+. ++
T Consensus 50 ~~aL~~t~~~L---~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGI---NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHH---HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHH---HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 45555555554 223332 23444444444455 5666666666665544 23333343332222 333 67
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAR--EALDLFYKMIKAGVRPNYITFVSVLSACSHAGL------VQE 409 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 409 (644)
++++.++++.+.+ +|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887764 46678888777778888877 8999999999864 3466777766666677766 888
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE-AYDLIEGMK-V----KADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
++++++.++.. -+-|...|+-+...+.+.|+..+ +.++..+.- . ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99998888652 33467888888888888888544 555766652 1 2367788889999999999999999999
Q ss_pred Hhhc-cCCCCchhHHHHHH
Q 006457 484 KLFE-LEPNNCGYHVLLSN 501 (644)
Q Consensus 484 ~~~~-~~p~~~~~~~~l~~ 501 (644)
.+.+ .+|-....+...++
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9996 79988777765544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.1e-07 Score=79.13 Aligned_cols=155 Identities=10% Similarity=-0.037 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA-CSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 403 (644)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34456667778888888888887764 35667888888888888888888888877653 3343322221111 112
Q ss_pred cCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 478 (644)
.+...+|...++...+ ..| +...+..+...|...|++++|...|+++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222346777777754 345 4777888888888889999988888875 44443 45788888888888888888
Q ss_pred HHHHHHhhc
Q 006457 479 EIAAKKLFE 487 (644)
Q Consensus 479 ~~~~~~~~~ 487 (644)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-06 Score=78.32 Aligned_cols=135 Identities=10% Similarity=-0.065 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (644)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3466677777777777777776552 355677777777777777777777777777642 224556666666665444
Q ss_pred C--HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006457 406 L--VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLG 467 (644)
Q Consensus 406 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 467 (644)
. .+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3 233444444431 22222223334455566677777777777765 56677655544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-07 Score=76.09 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=84.3
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 423 IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 423 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 444 3455666777888899999999998876 2334 677888889999999999999999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHhhC
Q 006457 500 SNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=77.55 Aligned_cols=172 Identities=10% Similarity=-0.098 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 006457 309 GKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-NVRSWTAMIAGYGMHC----RAREALDLFYKMI 383 (644)
Q Consensus 309 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 383 (644)
|...+....+.| +...+..|..+|...+++++|...|++..+. +...+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 4556666777777788888888888776543 56677777777777 5 7888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHh
Q 006457 384 KAGVRPNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMVDLLGR----AGKLKEAYDLIEG 452 (644)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 452 (644)
+.| +...+..|...+.. .+++++|..+|+...+ ..|+ ...+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 45566667777766 7888999999888843 3443 6778888888887 7789999999887
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhccCC
Q 006457 453 MK-VKADFVVWGSLLGACRIH-K-----NVDLGEIAAKKLFELEP 490 (644)
Q Consensus 453 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 490 (644)
.- ..++...+..|...|... | |.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 62 224566777777777543 2 88999999998887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=72.31 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGAC 469 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~ 469 (644)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666442 1224555666666677777777777766655 1 223566777888888
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (644)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888877766543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=89.01 Aligned_cols=186 Identities=9% Similarity=-0.033 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455556666666777777666665542 2 45566666777777777777777777766532 22455666666677
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPG------VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (644)
...|++++|...|+...+. .|+ ...+..+ ...+...+.. .......++......+ ..+ ..|+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 7777777777777666431 121 1111111 1112212221 1222233344443333 332 26888
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHHHHHhhc-CCchHHHHHHHHHhhC
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLSNIYANA-GRWEDVERTRSLMKNR 522 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 522 (644)
++|.+.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998877777777777776 7789999999888654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=76.58 Aligned_cols=126 Identities=6% Similarity=-0.072 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555556666666666666666442 1224556666666777777777777776654 2223 5667888888888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHH--HhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI--YANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 520 (644)
..|++++|...+++++++.|.++..+..+..+ +...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999888777544444 778899999998887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-07 Score=87.68 Aligned_cols=197 Identities=9% Similarity=-0.037 Sum_probs=149.7
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
..|++++|.+++++..+.... . .+...+++++|...|.+. ...|...|++++|.+.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888999999888764321 1 011157899998887763 5678889999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 382 MIKA----GVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 382 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
..+. |-.+. ..+|..+...|...|++++|+..|++...-+ |-.+ ...++..+..+|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 21111 3478888899999999999999999875421 1111 24678888999998 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc------hhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 453 M-KVKA---D----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC------GYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 453 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
. .+.| + ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788888999999999999999999999866543 3667778888899999999999998
Q ss_pred Hh
Q 006457 519 MK 520 (644)
Q Consensus 519 m~ 520 (644)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.5e-07 Score=73.31 Aligned_cols=118 Identities=12% Similarity=-0.023 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666677777777777766442 1234566667777777777777777777665 2223 46677888888
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCch
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (644)
+...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999998888888988888887753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=72.50 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 466 (644)
+...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 345566666666777777777777776643 233 4666777777777777777777777665 2223 566778888
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
..+...|++++|...++++++++|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888899999999999988888888888888888776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-05 Score=75.21 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=64.1
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH---HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh----
Q 006457 219 FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVT---WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV---- 291 (644)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---- 291 (644)
..|+..+...+...+.-. + ..+|..-...+... +...+..+...|++++|..++++..+.....|+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 355555555555544322 1 12333333333333 33346778889999999999998873222222221
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-ES----VIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.+..+...+...++++.|...+..+.+.... ++ ..+++.+...|...|++++|...|++.
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223444444555666666666666553221 11 113445555555555555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=78.29 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE--K-NV------RSWTAMIAGYGMHCRAREALDLFYKMIKAGV---RPN--YI 392 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 392 (644)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466677888889888888875442 1 11 2234455667788899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KV------KA-DF 459 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 459 (644)
++..+...|...|++++|..+|+++..-....|+ ..++..+...|.+.|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999888632111222 257888888999999999999988865 11 11 15
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHhhcc
Q 006457 460 VVWGSLLGACRIHKNVDLG-EIAAKKLFEL 488 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 488 (644)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888899999999999 7778887754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=85.18 Aligned_cols=143 Identities=12% Similarity=-0.032 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+...-. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHHH
Confidence 4466666677777777777777777766632 221000 0011111000 01456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH-
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV- 512 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 512 (644)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3333 6778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 006457 513 ERTRSLMK 520 (644)
Q Consensus 513 ~~~~~~m~ 520 (644)
.+.++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=71.96 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888765 2333 56788888888889999999999999999999999899999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 006457 505 NAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~~ 522 (644)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=77.79 Aligned_cols=117 Identities=7% Similarity=0.000 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA-CRIHKNV--DLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 478 (644)
.|++++|...++..... .+.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45555555555555432 1224455566666666666666666666654 1122 45566666666 5677776 788
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...++++++.+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888887778888888888888888888888777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=68.94 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--CchhHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN--NCGYHVLLSN 501 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 501 (644)
+...+..+...+.+.|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888775 22 235678888888889999999999999999999999 8889999999
Q ss_pred HHhhc-CCchHHHHHHHHHhhCCC
Q 006457 502 IYANA-GRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 502 ~~~~~-g~~~~a~~~~~~m~~~~~ 524 (644)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=82.80 Aligned_cols=136 Identities=10% Similarity=-0.098 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLL 437 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 437 (644)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777653 354444445555677888888888888755221 1 121 23566778888
Q ss_pred hhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 438 GRAGKLKEAYDLIEGMK---VKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
.+.|++++|++.|++.. ..|. ...+..+..++...|+.++|...++++.+.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88888888888888762 2143 236667778888889999999999999988887 66555553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-07 Score=82.68 Aligned_cols=169 Identities=9% Similarity=-0.042 Sum_probs=97.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
......|++++|.+.|+.-.+. ....|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 3344455666665555533221 2345666666666777777777777776653 2211000000 0000
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
- ... .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01356667777888888888888888765 2233 567888888999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCchHHH-HHHHHHhhC
Q 006457 488 LEPNNCGYHVLLSNIYANAGRWEDVE-RTRSLMKNR 522 (644)
Q Consensus 488 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 522 (644)
++|+++..+..++.++...|+.+++. ..++.|-.+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888877776 455555433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=71.40 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999877 3344 6778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 006457 507 GRWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~ 523 (644)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-06 Score=76.58 Aligned_cols=181 Identities=7% Similarity=-0.056 Sum_probs=134.4
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVRSWTAM-------IAGYGMHCRAREALDLFYKMIKAGVRPNY--------------- 391 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 391 (644)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888899999988774 3 34577777 3455555555555555554433 33321
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 006457 392 -------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADF----V 460 (644)
Q Consensus 392 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 460 (644)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456678889999999999998843 3465446666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccC--CC-CchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELE--PN-NCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788899999999999999999998543 54 4457888999999999999999999999864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=70.54 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=82.2
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677778888888888888888888765 2233 567888888888999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=75.33 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=96.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HhhcCCH--
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL-LGRAGKL-- 443 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 443 (644)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 44677888888888887753 346677888888888889999999988888652 12356677778887 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999888876 3334 46688888889999999999999999999999988654433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=75.24 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345556666777778888888877777542 2235667777777888888888888887765 2333 55677888888
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+...|++++|+..+++++++.|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888999999999999999988887765443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.3e-06 Score=75.69 Aligned_cols=151 Identities=14% Similarity=0.005 Sum_probs=75.1
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 006457 337 KCGQVDLARK---AFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 337 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 408 (644)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++.... |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322223445666666666667777777666665541 1111 2334555556666667777
Q ss_pred HHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 006457 409 EGWHWLNTMGHEFNIEP-----GVEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD----FVVWGSLLGACRIHKNV 475 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~ 475 (644)
+|...++.......-.+ ....+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666666543211111 12334555555666666666655555430 0111 11234444555555555
Q ss_pred hHHHHHHHHhhc
Q 006457 476 DLGEIAAKKLFE 487 (644)
Q Consensus 476 ~~a~~~~~~~~~ 487 (644)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=73.90 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444433 1122 3344444444445555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHh
Q 006457 507 GRWEDVERTRSLMK 520 (644)
Q Consensus 507 g~~~~a~~~~~~m~ 520 (644)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555554444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=65.01 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=61.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555331 1223445555555555666666666655544 1222 4556666667777
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777776666555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-06 Score=70.90 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=84.7
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 006457 387 VRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVW 462 (644)
Q Consensus 387 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 462 (644)
+.|+ ...+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|.+.|++++|++.|++. ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3453 34677777888899999999999998865 345 5788888999999999999999999877 3344 56688
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+..++...|++++|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.26 E-value=6.2e-06 Score=67.57 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 22 3367789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 006457 505 NAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~~ 522 (644)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=66.71 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778888999999999999999987 2333 6778888999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhC
Q 006457 504 ANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~ 522 (644)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.8e-06 Score=68.77 Aligned_cols=98 Identities=8% Similarity=-0.057 Sum_probs=88.4
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999986 4444 677899999999999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=68.29 Aligned_cols=125 Identities=13% Similarity=-0.049 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+...|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 3344444444555555555555544431 223444444444555555555555555554331 1123444455555555
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChhHHHHHHHHhh
Q 006457 439 RAGKLKEAYDLIEGM-KVKA-DFVVWGS--LLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
+.|++++|.+.|+++ ...| +...+.. +...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555443 1112 2223322 2222444555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-05 Score=67.40 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGS 464 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 464 (644)
...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 33444444455555555555555555422 2333 345555556666666666666666554 2223 4556777
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
+..++...|++++|...++++++++|+++..+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777777888888888888888888877766666655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.4e-06 Score=73.72 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=27.4
Q ss_pred hcCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 235 RGGHVDVSRK---VFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 235 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4566666666 4444333345566666667777777777777766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=85.70 Aligned_cols=116 Identities=7% Similarity=-0.049 Sum_probs=84.5
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
.+...|++++|.+.|+++.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344566667777766666442 33 3666777777777777777777777665 3334 5668888889999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHH--HhhcCCchHHHHHHHH
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNI--YANAGRWEDVERTRSL 518 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 518 (644)
+|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999888888 8888999999998874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.7e-06 Score=69.20 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778888999999999999999999986 56677 578888999999999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHhhC
Q 006457 501 NIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-06 Score=68.95 Aligned_cols=95 Identities=5% Similarity=-0.084 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch-------hHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG-------YHV 497 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 497 (644)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888899999999988876 3344 5678888999999999999999999999999887643 677
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.9e-06 Score=69.29 Aligned_cols=106 Identities=8% Similarity=-0.125 Sum_probs=73.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555666777777777777776542 1224666677777777777777777777765 2233 4556777788888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 888888888888888888888776655443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=66.18 Aligned_cols=108 Identities=7% Similarity=-0.148 Sum_probs=67.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666665432 1223556666666666666666666666654 2233 4557777777778
Q ss_pred hcCChhHHHHHHHHhhccC------CCCchhHHHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNI 502 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 502 (644)
..|++++|...++++++++ |+++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888877 7666666555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00013 Score=71.09 Aligned_cols=226 Identities=12% Similarity=0.047 Sum_probs=122.0
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHHccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA-VTLSAVLLAIAHLG-VLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
++.+-....+.+..++|++++..+. .+.|+. ..++.--..+...+ .++++...++.++... +.+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L---~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIV---RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3433334444555577888888887 233443 34555555555566 4777777777777654 3455555555555
Q ss_pred HHhc-C-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 335 YCKC-G-QVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAR--------EALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 335 ~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
+.+. + +++++.++++.+.+. |..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5554 5 666777777766643 4445555444444444333 5566666665543 22444555554444
Q ss_pred HccCC-------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006457 402 SHAGL-------VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKN 474 (644)
Q Consensus 402 ~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 474 (644)
.+.+. +++++++++.++. ..| -|...|+-+-..+...|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~---~~P-------------------------------~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIH---LIP-------------------------------HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHH---HCT-------------------------------TCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHH---hCC-------------------------------CCHHHHHHHHHHHHhcCC
Confidence 44443 3444444444432 122 133444444433333332
Q ss_pred h--------------------hHHHHHHHHhhcc------CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 475 V--------------------DLGEIAAKKLFEL------EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 475 ~--------------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
. .........+... ++.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2 1112222222221 256677888899999999999999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00049 Score=66.64 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=129.3
Q ss_pred HCCChh-HHHHHHHHhHHcCCCCCChhh-HHHHHHHHHcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 266 QNGLAA-EALDVFDQMVKSTDVKCNAVT-LSAVLLAIAHLGV----------LRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 266 ~~g~~~-~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
+.|.++ +|++++..+. .+.|+..| ++.--..+...+. ++++..+++.+.... +-+..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444443 5677776666 33444433 3322222222222 456666666666654 445566666555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 006457 334 MYCKCG--QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR-AREALDLFYKMIKAGVRPNYITFVSVLSACSHA--- 404 (644)
Q Consensus 334 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 404 (644)
.+.+.| .++++..+++.+.+ +|..+|+.-...+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 36777777777663 456677776666667776 577888888887754 33555555544444333
Q ss_pred -----------CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHH
Q 006457 405 -----------GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRA-----------GKLKEAYDLIEGM-KVKADFV 460 (644)
Q Consensus 405 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 460 (644)
+.++++++++..... ..| |...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 346677777776654 233 455565444444444 3466666666665 344543
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 461 VWGSLLGAC-----RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 461 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.|..+..+. ...|..++....+.++.+++|.....|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 343222211 234556677777777777777766666555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=69.17 Aligned_cols=108 Identities=13% Similarity=-0.096 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445566666677777777777777776542 1225667777777788888888888877765 2334 46788889999
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=75.47 Aligned_cols=190 Identities=12% Similarity=-0.020 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444455555666666666666666666543 33566777888888889999999998888765 3566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|+..|++..+. .|+. ..+...+..... ..++..... ... ....++......+...+ .|++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999988763 2321 011111111111 111112211 212 24455555555554433 689999
Q ss_pred HHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChhHHHHHHHHhhccC
Q 006457 446 AYDLIEGM-KVKADFVVW-GSLLGACRIH-KNVDLGEIAAKKLFELE 489 (644)
Q Consensus 446 A~~~~~~~-~~~p~~~~~-~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 489 (644)
|.+.+++. ...|+.... ..+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99888775 456655433 3333334444 66788999999887743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=70.32 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357788888889999999999999999999999999999999999999999999999988764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=6.1e-06 Score=70.00 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcc-------CCCCchhH----HHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFEL-------EPNNCGYH----VLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888889999888888888888 99999999 9999999999999999999998864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=66.46 Aligned_cols=97 Identities=6% Similarity=-0.042 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999986 2233 6778889999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhC
Q 006457 504 ANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~ 522 (644)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-05 Score=80.07 Aligned_cols=114 Identities=14% Similarity=0.004 Sum_probs=48.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 444 (644)
+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|+..++++.+ +.| +...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 334455555555555554431 12344444455555555555555555555433 122 2444455555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGA--CRIHKNVDLGEIAAK 483 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 483 (644)
+|.+.|++. ...| +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555443 1112 12223333322 444455555555555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=66.57 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=57.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHh
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYA 504 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 504 (644)
+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 112222 355566666677777777777777777777776 555677777777
Q ss_pred hcCCchHHHHHHHHHhh
Q 006457 505 NAGRWEDVERTRSLMKN 521 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~ 521 (644)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-05 Score=78.77 Aligned_cols=162 Identities=6% Similarity=-0.175 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCCC-hhH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYI----TFVSVLSACSHAGLVQEGWHWLNTMGHE---FNIEPG-VEH 429 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 429 (644)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|.++++..++.....- .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766542 1112221 1222222334467777777777665421 122222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccC---CCC----ch
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-----K--VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELE---PNN----CG 494 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 494 (644)
+..|...|...|++++|..++++. + .+|. ..++..++..|...|++++|...+++++... |++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777788888888888888877755 1 1222 3366777788888888888888888877653 221 24
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56667777888888888888776664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0018 Score=63.02 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCC-ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNG-LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
+.+-....+.+..++|+++++.+.. .+..+|+.--..+...| .++++++.+..+. .. -+-+..+++.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~-nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQ-NLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HT-TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHH
Confidence 3333444555666889999998833 36778998888888888 5999999999998 32 23456677777667766
Q ss_pred c-c-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--------HHHHHHHhcCC---CChhhHHHHHHHHHhc
Q 006457 303 L-G-VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD--------LARKAFNQMKE---KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 303 ~-~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~ 369 (644)
. + +++++..+++.+++.. +.+...|+--.-.+.+.|.++ ++.+.++++.+ .|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 6 6 7899999999988754 456677776555555555555 88888887764 4778899988888888
Q ss_pred CC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 370 CR-------AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 370 g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
++ ++++++.++++.... +-|...|..+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 76 789999999998853 3366666665555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-05 Score=65.53 Aligned_cols=100 Identities=6% Similarity=-0.163 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLG 467 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 467 (644)
+...+..+...+...|++++|...|+..... .+.+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4445555555566666666666666655432 1223555666666666666666666666554 2223 4556677777
Q ss_pred HHHhcCChhHHHHHHHHhhccCCC
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-05 Score=79.98 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 346677777777777888888777777663 2221000 0 000000 000 01456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 2333 57788899999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHhh
Q 006457 514 R-TRSLMKN 521 (644)
Q Consensus 514 ~-~~~~m~~ 521 (644)
+ .++.|-.
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=62.55 Aligned_cols=93 Identities=16% Similarity=0.001 Sum_probs=46.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA---DFVVWGSLLGACRIH- 472 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~- 472 (644)
...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 33344444444444444444321 1122334444444555555555555555443 1222 345566666666666
Q ss_pred CChhHHHHHHHHhhccCCCC
Q 006457 473 KNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~ 492 (644)
|++++|.+.++++++..|++
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHhhcccCC
Confidence 66666666666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00093 Score=64.67 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhhHHHHHHHHHhcC--C
Q 006457 307 RLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ----------VDLARKAFNQMKE---KNVRSWTAMIAGYGMHC--R 371 (644)
Q Consensus 307 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 371 (644)
++|....+.++..+ +.+..+++.--..+...|. ++++..+++.+.. ++..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888887755 3334445433333322222 6778888887763 46778888888888877 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc----------
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL-VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA---------- 440 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------- 440 (644)
+++++++++++.+.. +-|...|+.-...+...|. +++++++++.++.. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 899999999999864 4477788877777788888 68999999999763 234667777666666554
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhccCCCCchhHHHHHHH-
Q 006457 441 ----GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH-----------KNVDLGEIAAKKLFELEPNNCGYHVLLSNI- 502 (644)
Q Consensus 441 ----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 502 (644)
+.++++++.+.+. ...| |...|+-+-..+... +-++++++.++++++++|++...+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4578888888876 2334 777888766666554 457899999999999999986555444332
Q ss_pred --HhhcCCchHHHHHHHHHhh
Q 006457 503 --YANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 503 --~~~~g~~~~a~~~~~~m~~ 521 (644)
....|..++....+.++++
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2246777788888888875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=65.59 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-------chhHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-------CGYHV 497 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 497 (644)
...+..+...+...|++++|...|++. . .+.+...|..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777778888888888888765 2 22356678888888888999999999999999887766 77889
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998875
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.7e-06 Score=68.56 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 440 AGKLKEAYDLIEGM-KV---KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666554 22 13 234566666666667777777777777777777776677777777777777777777
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-05 Score=62.51 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=52.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHH
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV----KAD----FVVWGSLL 466 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll 466 (644)
.+...+...|++++|..+|+..... .+.+...+..+...|...|++++|...++++ .. .++ ..+|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3333444444444444444444331 1123344444444444555555555444443 10 112 44566666
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..+...|++++|...++++++..| ++.....+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 677777777777777777777766 345555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.98 E-value=7.2e-05 Score=73.80 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhhHHHHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----------------VRSWTAMIAG 365 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~ 365 (644)
++++.|...+....+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332211 22456788899999999999999999998753 32 2456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 444 (644)
|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+.+.+ +.| +...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666542 22444555555555556666666655555533 122 2344444444444444444
Q ss_pred HH
Q 006457 445 EA 446 (644)
Q Consensus 445 ~A 446 (644)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=65.90 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNY----ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGC 432 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 432 (644)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..+++.......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------- 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 4555666666666666666666665542100 111 2344444455555555555555554432100
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhh
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYAN 505 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 505 (644)
..+..+ ...++..+...+...|++++|...+++++++. +.....+..++.+|..
T Consensus 81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 000000 12344555566666666666666666665542 1123467778888888
Q ss_pred cCCchHHHHHHHHHhh
Q 006457 506 AGRWEDVERTRSLMKN 521 (644)
Q Consensus 506 ~g~~~~a~~~~~~m~~ 521 (644)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888888888877653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00016 Score=74.01 Aligned_cols=161 Identities=11% Similarity=-0.034 Sum_probs=93.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhh
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMD-LEESV----IVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRS 358 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~ 358 (644)
+..+...|...|++++|.+.+..+.+.- -.++. .+.+.+-..+...|+++.|..++..... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444445555555555555554443310 00111 1222233333445666666666655431 11 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-C-CC-C--hh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKA--GV--RPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFN-I-EP-G--VE 428 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~-~p-~--~~ 428 (644)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++....... + .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888877642 11 222 34677777888888898888888887653211 1 11 1 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677778888889998888776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=7.9e-05 Score=67.12 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-D----------------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
.+..+...+.+.|++++|.+.|++. ...| + ...|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666665544 1111 1 36788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 491 NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+++..+..++.+|...|++++|.+.+++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=9e-05 Score=61.20 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
|..+...+.+.|++++|++.|++.++.. +-+...|..+..++...|++++|+..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4445555555555555555555555431 223444555555555555555555555554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.8e-05 Score=60.90 Aligned_cols=100 Identities=7% Similarity=-0.113 Sum_probs=60.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCC-h---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPG-V---EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGA 468 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 468 (644)
...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33445556666666666655442 122 1 35555666666666666666666654 22232 4456667777
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...|++++|...++++++..|+++.......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 77888888888888888888887765544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=68.51 Aligned_cols=71 Identities=15% Similarity=0.015 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM--------KVKADF-VVW----GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.|..+..++.+.|++++|+..+++. ++.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555556666666555555443 337754 478 899999999999999999999999999988665
Q ss_pred HHHH
Q 006457 496 HVLL 499 (644)
Q Consensus 496 ~~~l 499 (644)
...+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=5.9e-05 Score=61.73 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=53.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHK 473 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 473 (644)
+...+.+.|++++|...|+.+.+ ..| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34445556666666666666543 223 4555566666666666666666666654 2333 4456666667777777
Q ss_pred ChhHHHHHHHHhhccCCCC
Q 006457 474 NVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~ 492 (644)
++++|...++++++++|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 7777777777777777764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.5e-06 Score=66.09 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHV 497 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (644)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888876 2333 67788888899999999999999999999999998 77788
Q ss_pred HHHHHHhhcCCchHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~ 517 (644)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.3e-05 Score=77.51 Aligned_cols=147 Identities=9% Similarity=-0.089 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777888888899999999999998874 455442 233444444433221 236778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH-hhcCCchHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY-ANAGRWEDV 512 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 512 (644)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 3334 5678888999999999999999999999999999988888888773 455677777
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.++++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888777643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.1e-05 Score=75.63 Aligned_cols=152 Identities=9% Similarity=-0.056 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788889999999999999998653221111 1233344444443221 13677788889999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGA-CRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 481 (644)
|++++|+..++...+. -+.+...|..+..+|...|++++|.+.|++. ...|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988652 2235788889999999999999999999987 45554 3345544444 2445677888899
Q ss_pred HHHhhccCCCCc
Q 006457 482 AKKLFELEPNNC 493 (644)
Q Consensus 482 ~~~~~~~~p~~~ 493 (644)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.7e-05 Score=64.96 Aligned_cols=127 Identities=9% Similarity=-0.084 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN---- 390 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 390 (644)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888999999999999999988653 22 14788889999999999999999999875311 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
...+..+...+...|++++|...++...... +..+ ....+..+...|...|++++|.+.++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3456666777778888888888877764311 1000 12233444444444445444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0008 Score=71.16 Aligned_cols=169 Identities=8% Similarity=-0.008 Sum_probs=132.1
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-
Q 006457 340 QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR----------AREALDLFYKMIKAGVRPNYITFVSVLSACSHAG- 405 (644)
Q Consensus 340 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 405 (644)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777763 345677776666666666 889999999998864 346778888888888888
Q ss_pred -CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 006457 406 -LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG-KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH--------- 472 (644)
Q Consensus 406 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------- 472 (644)
++++++++++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999663 2335777887777888888 889999998887 3444 677888887776653
Q ss_pred -----CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 473 -----KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 473 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+.++++.+.+.++++++|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=8e-05 Score=74.43 Aligned_cols=136 Identities=11% Similarity=0.004 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVD 435 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 435 (644)
..|..+...+.+.|++++|++.|++.++. .|+.. .....+ .. ....| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~---~~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DG---AKLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HH---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HH---HHHHHHHHHHHHHHHH
Confidence 35667777777888888888888777652 11100 000111 11 01222 3567888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 4455 56788889999999999999999999999999999999999999998888887776
Q ss_pred H
Q 006457 514 R 514 (644)
Q Consensus 514 ~ 514 (644)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.7e-05 Score=65.51 Aligned_cols=76 Identities=17% Similarity=0.054 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc-hhHHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC-GYHVLLSNI 502 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 502 (644)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888889999988888776 3334 566888899999999999999999999999999987 444455443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.7e-05 Score=77.96 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=90.4
Q ss_pred HHccCCHHHHHHHHHHHhhhc--CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEF--NIEP----GVEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VVWGS 464 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 464 (644)
+...|++++|+.++++..... -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777776664321 1222 2456777888888888888888877765 234443 37888
Q ss_pred HHHHHHhcCChhHHHHHHHHhhc-----cCCCCchh---HHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFE-----LEPNNCGY---HVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
|...|...|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..+++.++++-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999887 45776544 45677888899999999999999987543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.6e-05 Score=63.45 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHhhhcCC-CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNI-EP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666677777666431 10 13 3556667777777777777777777765 2233 4567777778888888888888
Q ss_pred HHHHHhhccCCCCchhH
Q 006457 480 IAAKKLFELEPNNCGYH 496 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~ 496 (644)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00022 Score=73.59 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998864
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=8.8e-05 Score=58.22 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999999998764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=72.84 Aligned_cols=112 Identities=5% Similarity=-0.055 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGAC 469 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 469 (644)
...+..+...+.+.|++++|+..|+++.+-. |.. ...-..+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666677777777888777777764410 000 0000111111 1222 456888899999
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00013 Score=55.77 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888765 2223 56678888888899999999999999999999999888888888876
Q ss_pred hcC
Q 006457 505 NAG 507 (644)
Q Consensus 505 ~~g 507 (644)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=59.16 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=62.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555543 3334 5668888888889999999999999999999999989999999999999999999999988765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=53.59 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 456 KADFVVWGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.+|+..|..+..++...++ .++|...++++++++|+++.....++..+...|++++|...|+.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888877765554 78999999999999999999999999999999999999999999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=75.58 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=86.6
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chhHH
Q 006457 436 LLGRAGKLKEAYDLIEGM---------KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGYHV 497 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~ 497 (644)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 13343 347899999999999999999999999873 4554 45688
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
.|+.+|...|++++|..++++..+--.. .-...||.+.++...+.+...++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987642110 012569999888777666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.8e-05 Score=63.42 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=64.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 439 RAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKN----------VDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666554 2233 45566666666655554 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 006457 507 G-----------RWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g-----------~~~~a~~~~~~m~~~~ 523 (644)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=73.78 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chh
Q 006457 434 VDLLGRAGKLKEAYDLIEGM------KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGY 495 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~ 495 (644)
+.-+.+.|++++|++++++. ...|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777654 01222 236777888888888888888888888763 3444 456
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
+..|+.+|...|++++|..++++..+--.. .-...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987642110 012569999999988888887775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00048 Score=54.77 Aligned_cols=65 Identities=8% Similarity=-0.129 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=73.41 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chhHHHHHH
Q 006457 440 AGKLKEAYDLIEGM---------KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGYHVLLSN 501 (644)
Q Consensus 440 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 501 (644)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.++++++++ .|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 122332 36777888888888888888888888763 3443 456778888
Q ss_pred HHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 006457 502 IYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLE 560 (644)
Q Consensus 502 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~ 560 (644)
+|...|++++|..++++..+--.. .-...||.+.+++.++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999998887642110 01256888877665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00047 Score=58.28 Aligned_cols=122 Identities=10% Similarity=-0.069 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (644)
+.+++++|++.+++..+.. +-+...|..+..++...+.++.+.... +.+++|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi 66 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHH
Confidence 4445666666666666542 224455555555555554432111100 0123455
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 448 DLIEGM-KVKA-DFVVWGSLLGACRIH-----------KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 448 ~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++..+...+-. .++|.+
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~e 139 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQ 139 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHh
Confidence 555443 2333 233555555555544 58999999999999999998644443322 355666
Q ss_pred HHHHHhhCC
Q 006457 515 TRSLMKNRR 523 (644)
Q Consensus 515 ~~~~m~~~~ 523 (644)
+.-.....+
T Consensus 140 l~~~~~~~~ 148 (158)
T 1zu2_A 140 LHAEAYKQG 148 (158)
T ss_dssp HHHHHHHSS
T ss_pred ccCcccccc
Confidence 655555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0028 Score=52.95 Aligned_cols=89 Identities=8% Similarity=-0.126 Sum_probs=43.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh---
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN--- 505 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 505 (644)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333334444444444433212234444444444443 44555555555555544 334555566666665
Q ss_pred -cCCchHHHHHHHHHhhCC
Q 006457 506 -AGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 506 -~g~~~~a~~~~~~m~~~~ 523 (644)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0068 Score=64.02 Aligned_cols=148 Identities=11% Similarity=0.006 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 370 CRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGL----------VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
...++|++.++++... .|+ ...|+.--.++...|+ +++++++++.+.+. -+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456899999999985 554 4456655555555666 89999999999763 2335778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc-------
Q 006457 439 RAG--KLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHK-NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA------- 506 (644)
Q Consensus 439 ~~g--~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 506 (644)
+.| ++++|+++++++ ... -|...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999988 233 37889999888888888 899999999999999999999999999988774
Q ss_pred -------CCchHHHHHHHHHhh
Q 006457 507 -------GRWEDVERTRSLMKN 521 (644)
Q Consensus 507 -------g~~~~a~~~~~~m~~ 521 (644)
++++++.+.++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00014 Score=71.94 Aligned_cols=436 Identities=11% Similarity=0.066 Sum_probs=242.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
...+..|+.|..+..+.+++.+|..-| +... |+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSY--IKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSS--CCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHH--HhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456778888999999999998888776 3444 667789999999999999999988887666432 34444678888
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----------------------CCC
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----------------------IRN 140 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------~~~ 140 (644)
|++.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+..- ..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888887765444332 356555566777777788888887777665432 246
Q ss_pred eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC-
Q 006457 141 IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGF- 219 (644)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~- 219 (644)
+.||-.+-.+|...+.+.-|.-.--.+. .....+..++.-|-..|.+++...+++... |+
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-----------------vhadeL~elv~~YE~~G~f~ELIsLlEagl--glE 259 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----------------VHADELEELINYYQDRGYFEELITMLEAAL--GLE 259 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----------------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TST
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-----------------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCC
Confidence 7778888888888887766654433333 111112234455667777777666665543 33
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCC
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMI----EK-------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKC 288 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 288 (644)
......++-|.-.|+|- +.++..+.++..- -| ....|.-++-.|.+-.+++.|... |. .. +|
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi-~h--~~ 332 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MM-NH--PT 332 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TT-SC--HH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HH-hC--Ch
Confidence 23566788888888876 3444444443321 11 445688888888888888877533 22 11 11
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH-------------HHHHHhcCCHHHHHHHHHhcCCCC
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI-------------IDMYCKCGQVDLARKAFNQMKEKN 355 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~~ 355 (644)
+..--..+.....+..+.+---+....-++ -.+...+-| ++.+.+.|++.-....+......|
T Consensus 333 ~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N 408 (624)
T 3lvg_A 333 DAWKEGQFKDIITKVANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 408 (624)
T ss_dssp HHCCGGGGTTTGGGCSCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSC
T ss_pred hhccHHHHHHHHHHcchHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 111111111222222222222111111111 111122233 334444555544444444444444
Q ss_pred hhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 356 VRSWT-AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 356 ~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
...-| ++-..|....+++ ++..-+.+|-+-..+.-|.++ ++ .+-.+.-..-.
T Consensus 409 ~~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA 461 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAA 461 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHH
Confidence 43333 2333344444432 233333333333333333222 11 12222333334
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|.+.++|+++.++..+=+.-.| .+...+..|+.+.++++++-.++.+-. ..+....-.|...=+.|-+.+
T Consensus 462 ~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~~--EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 462 YLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEKR--ECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCST--HHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCch--HHHHHHHHHHhhccChHHHHH
Confidence 567788888888777654432222 233345667777777777776665432 445555555556656665554
Q ss_pred H
Q 006457 515 T 515 (644)
Q Consensus 515 ~ 515 (644)
+
T Consensus 534 l 534 (624)
T 3lvg_A 534 T 534 (624)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=50.37 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34578888889999999999999999999999999999999999999999999999999988753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.011 Score=57.54 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc----cC----CHHHHHHHHHHHhh
Q 006457 354 KNVRSWTAMIAGYG--MHCR---AREALDLFYKMIKAGVRPN-YITFVSVLSACSH----AG----LVQEGWHWLNTMGH 419 (644)
Q Consensus 354 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 419 (644)
.+...|...+.+.. ..++ ..+|+.+|++..+. .|+ ...+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 2333 46788999998884 565 3344443333321 00 01111111111111
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 420 EFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0112335666666666666667777777777665 2346666665666666677777777777777777777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=53.16 Aligned_cols=112 Identities=12% Similarity=-0.065 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKE 445 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 445 (644)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 44444 556666777888899999988552 466777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCC
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 490 (644)
|.+.|++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887434577788888888877 7899999999999888753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=51.48 Aligned_cols=79 Identities=9% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 410 GWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++..|+...+ ..| +...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555432 223 4556666666666777777777666654 2223 45566677777777777777777777777
Q ss_pred ccCCC
Q 006457 487 ELEPN 491 (644)
Q Consensus 487 ~~~p~ 491 (644)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.004 Score=63.02 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEF--NIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VVWGSLLG 467 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~ 467 (644)
.|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 12222 456677777777777777777777665 234443 37888888
Q ss_pred HHHhcCChhHHHHHHHHhhc-----cCCCCchhHH
Q 006457 468 ACRIHKNVDLGEIAAKKLFE-----LEPNNCGYHV 497 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 497 (644)
.|...|++++|+.+++++++ +.|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 89999999999999998877 3677765443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0042 Score=48.33 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
...|..+...|...|++++|+..|++..+.. +-+...|..+..++...|++++|...|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555555555555432 112334444555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0066 Score=61.54 Aligned_cols=102 Identities=9% Similarity=-0.094 Sum_probs=71.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEF--NIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VV 461 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 461 (644)
+..+...|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765321 12222 456777888888888888888887765 234443 37
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhc-----cCCCCchhHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFE-----LEPNNCGYHVLL 499 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 499 (644)
++.|...|...|++++|+.+++++++ +.|++|.+-..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88888999999999999999999887 468877655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.096 Score=58.18 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
......|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|..+. | |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~-------d---~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH-------D---LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-------C---HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc-------C---hhhhHHHHHHcCCHHHHH
Confidence 34567899999999987764 56899999999999999999999999886 2 334445555567766666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
.+-+.....| -++....+|.+.|++++|.+++.+ .+++++|..+-+.
T Consensus 728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 6555555544 223444556667777777776544 4667777765543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0063 Score=46.96 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKA-DFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
....+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888888765 2334 456 777888888888888888888888888888887665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0034 Score=48.59 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=53.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCch-hHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCG-YHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677899999999999999999999999 99999999999999999999999987643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.17 Score=40.47 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=102.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+- .| ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHH
Confidence 3457777888888877753 24455555665555555666666666666332 22 2457888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 447 YDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
...+-.+.. +..-...-+......|..+.-.+++..++.-+|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 887777753 44455667788889999999999999987777777899999999999999999999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.091 Score=58.38 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=22.7
Q ss_pred HhcCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHH
Q 006457 234 ARGGHVDVSRK-VFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVF 277 (644)
Q Consensus 234 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 277 (644)
...+++++|.+ ++..++.+ .....++..+.+.|..++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 34666777766 55443311 12255556666666666666543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=48.51 Aligned_cols=65 Identities=9% Similarity=-0.035 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhccC-C-CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 ADFVVWGSLLGACRIHK---NVDLGEIAAKKLFELE-P-NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++..+...+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56667777777777766 5557888888887777 6 4456777777788888888888888887765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=54.33 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=68.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHhhccCCCC-chhHHHHHHHHhhc-CCchH
Q 006457 443 LKEAYDLIEGM-KVKAD---FVVWGSLLGACRI-----HKNVDLGEIAAKKLFELEPNN-CGYHVLLSNIYANA-GRWED 511 (644)
Q Consensus 443 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 511 (644)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666554 45665 5578888888877 599999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHhhCCCcCCC
Q 006457 512 VERTRSLMKNRRLAKTP 528 (644)
Q Consensus 512 a~~~~~~m~~~~~~~~~ 528 (644)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999876654334
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.23 Score=48.21 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
+...|.++...+...|++++|+..++++...+ |+...|..+...+...|++++|.+.|++... +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 44555555555555566666666666666643 5555555555556666666666666665532 34554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.045 Score=42.73 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-----K----VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555666666666555543 0 123456788888999999999999999999999999987665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.5 Score=37.51 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.... | +..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHHHHH
Confidence 3456788999998888776 467789999999999999999999998885 2 344444555566666555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5544444433 1233333444566666666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.086 Score=43.93 Aligned_cols=40 Identities=18% Similarity=-0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
...+-.|.-++.+.|++++|.+.++.+++++|++..+...
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3355567778889999999999999999999987554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.15 Score=38.61 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 424 EPGVEHYGCMVDLLGRAGK---LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456677777777755444 67888888776 3444 455666677788888888888888888888888743
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=5 Score=42.31 Aligned_cols=316 Identities=9% Similarity=-0.013 Sum_probs=159.4
Q ss_pred HhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCCccHHHHHH
Q 006457 152 VQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRG-FDSEVGVGNTLI 230 (644)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li 230 (644)
.+.|++..+..+...+. ...+.| -..|..+....... ... ++...+.+.. .+.....-+.-+
T Consensus 17 ~~~~~~~~~~~l~~~l~------------~~pL~~-yl~y~~l~~~l~~~-~~~---ev~~Fl~~~~~~p~~~~Lr~~~l 79 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLK------------DYPLYP-YLEYRQITDDLMNQ-PAV---TVTNFVRANPTLPPARTLQSRFV 79 (618)
T ss_dssp HHTTCHHHHHHHSGGGT------------TSTTHH-HHHHHHHHHTGGGC-CHH---HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhc------------CCCcHH-HHHHHHHHhCcccC-CHH---HHHHHHHHCCCChhHHHHHHHHH
Confidence 44577776666655543 222222 22444444333211 222 4444444432 122223445566
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHH--
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRL-- 308 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~-- 308 (644)
..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+- ..| .........++..+.+.|.+..
T Consensus 80 ~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW-~~~-~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 80 NELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW-LTG-KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCC-CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 778889999999998877 44455555567778888999888888888776 433 2344456667776665554322
Q ss_pred HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHH
Q 006457 309 GKCIHDQVIKMD-----------LEESV-IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVR---SWTAMIAGYGMHCRAR 373 (644)
Q Consensus 309 a~~i~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 373 (644)
...=+..+...| ++++. .....++..+.+ ...+....... .++.. .+..-+.-+++ .+.+
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHH
Confidence 111112222211 11111 111222222211 11112222111 11111 11112222333 3778
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVS----VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
.|..+|....+.+ ..+...... +.......+...++...+..... ..++.....-.+....+.|+++.|...
T Consensus 232 ~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888876543 223332222 22233334434556666665533 123333333444445577999999999
Q ss_pred HHhCCCCC-CHHHH-HHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 450 IEGMKVKA-DFVVW-GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 450 ~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
|+.|+..+ +..-| -=+..+....|+.++|...++++.+ +. ..|-.|+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lA 356 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVA 356 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHH
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHH
Confidence 99886432 22222 2234566678888889988888875 32 4555553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.16 Score=40.59 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCChhH---HHHHHHHhhccC-C-CCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 DFVVWGSLLGACRIHKNVDL---GEIAAKKLFELE-P-NNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..+-..+..++.+.++... ++.+++.+++.+ | ..-.....|+-++.+.|++++|++..+.+.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444443332 445555544443 3 223344444555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=2.1 Score=36.59 Aligned_cols=130 Identities=9% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 14 SNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 14 ~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
..-...|+++.|.++.+++. +...|..|.....+.|+++-|.+.|..... |..+.-.+...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44578899999999988873 557899999999999999999999998764 334444455567776666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFL 168 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (644)
.+-+.....| -++.....+.-.|+++++.++|.+... |.--+......|..+.|.++..++-
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r-------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS-------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC-------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC-------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 6655555544 245555666678999999999988765 2222222333677788888888774
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=2.2 Score=34.32 Aligned_cols=125 Identities=11% Similarity=-0.055 Sum_probs=82.5
Q ss_pred HHHHHH--hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----------------------cCCHHHHHHHHh
Q 006457 192 ASVLSA--CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR----------------------GGHVDVSRKVFD 247 (644)
Q Consensus 192 ~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------------~g~~~~A~~~~~ 247 (644)
..++.| ..-.|..+++.++.....++. +..-+|.+|--... ||++......+-
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 334444 344688888888888877653 33334444433333 444444444443
Q ss_pred cCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 248 GMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
.+.. +....+..+......|+-++-.+++..+. .+.+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 86 ~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INNT-LNEHVNKALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3322 33445666778888888888888888864 256778888888889999999999999888888887753
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.22 Score=53.52 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=50.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
...|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3566778999999999999999999999999999999999999999999999885
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.016 Score=57.67 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=156.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccC
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFV 186 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p 186 (644)
.+.+|..|..++.+.|.+.+|..-|- .. .|...|...|.+..+.|.+++-+..+...+ .. .-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaR------------k~--~k 114 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR------------KK--AR 114 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS------------TT--CC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHH------------HH--hc
Confidence 45567777777777777777765542 22 566677778888888888888777776543 22 23
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----------------
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---------------- 250 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------- 250 (644)
++..=+.++-+|++.+++.+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 33444567777777777665444331 4566566677777888888888887777662
Q ss_pred --------CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 251 --------EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 251 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
..++.+|-.+-.+|...+++.-|.-.--.+. +.|| -...++..|...|.+++-..+++.-.... .
T Consensus 188 ~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 188 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp SSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 1367789999999999998877755444443 1122 11224445677788877777777655321 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE----K-------NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
....+|+-|.-.|+|- ++++-.+-++..-. | ....|.-++-.|.+..+++.|..
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5677888888888876 45555544443322 2 44579999999998888887653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.14 E-value=12 Score=41.12 Aligned_cols=250 Identities=9% Similarity=-0.030 Sum_probs=124.9
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCHh--HHHHHHHHHHHCCChhHHHHHHHHhHHcCC-CCCC---h--hhHHHHHHH
Q 006457 232 AYARGGHVDVSRKVFDGMIE----KDAV--TWNSIIAIYAQNGLAAEALDVFDQMVKSTD-VKCN---A--VTLSAVLLA 299 (644)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~---~--~t~~~ll~a 299 (644)
+....|+.+++..+++.... .+.. .-..+.-+.+..|..+++++++........ +.-+ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888887654 2322 333444556677776778887777652221 1111 1 111122222
Q ss_pred H--HccccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--hhhHHHHHHHHHhcCCH
Q 006457 300 I--AHLGVLRLGKCIHDQVIKMDLEESV--IVGTSIIDMYCKCGQVDLARKAFNQMKE-KN--VRSWTAMIAGYGMHCRA 372 (644)
Q Consensus 300 ~--~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~ 372 (644)
. ...++ +++...+..++...- +.. ...-+|.-.|...|+-+....++..+.+ .+ +.-.-++.-|+...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2 22233 344444444444221 111 1112333345566777777777665432 22 22223333445577888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 373 REALDLFYKMIKAGVRPNYITF--VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+.+..+.+.+... ..|....- ..+..+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887763 12222211 23345677888888777788888552 2223333333333344466666666776
Q ss_pred HhCCCCCCHHHHHH--HHHHHHhcCCh-hHHHHHHHHhh
Q 006457 451 EGMKVKADFVVWGS--LLGACRIHKNV-DLGEIAAKKLF 486 (644)
Q Consensus 451 ~~~~~~p~~~~~~~--ll~~~~~~g~~-~~a~~~~~~~~ 486 (644)
+.+....|..+-.. +.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65422223333222 22333333333 45666666664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=1.2 Score=41.53 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHhcCCCCh--hhHHHHHHH-HHhc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 006457 338 CGQVDLARKAFNQMKEKNV--RSWTAMIAG-YGMH--C------RAREALDLFYKMIKAGVRPN---YITFVSVLSACSH 403 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 403 (644)
.|+..+-.+.+.+....++ ..|..++.+ +... | ....|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4444555555666554433 456666653 3332 2 24566666777666 3555 4466666666766
Q ss_pred c-----CCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 006457 404 A-----GLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRA-GKLKEAYDLIEGM 453 (644)
Q Consensus 404 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 453 (644)
. |+.++|.+.|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 778888888877744 445 366677777777763 7777777777665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.06 E-value=1.6 Score=35.53 Aligned_cols=66 Identities=9% Similarity=-0.022 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhccCCC-CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGACRIHKN---VDLGEIAAKKLFELEPN-NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.|+..+-..+..++.+..+ ..+++.+++.++...|. .-.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555556655543 44677777777776663 334555667777888888888887777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.31 Score=37.75 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE-------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...+..+...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556678889999999999999999998753 34467789999999999999999999998875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.87 E-value=1.2 Score=35.56 Aligned_cols=74 Identities=15% Similarity=-0.072 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKE---AYDLIEGM-KVK-A--DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
|+..+--.+..++.+..+..+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344444444444444444333 44444443 111 2 1223445667788888999999999999999998765444
Q ss_pred H
Q 006457 498 L 498 (644)
Q Consensus 498 ~ 498 (644)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.01 E-value=22 Score=39.25 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=130.3
Q ss_pred HHhCCChHHHHHHHhhCCCCC--CC--eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCH-hhHH
Q 006457 118 YSKCGELSDARKLFDEIPQRI--RN--IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDS-VAIA 192 (644)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~t~~ 192 (644)
....|+.+++..+++...... .+ +..-..+.-+....|..++++.++......... ..|-..+. ....
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~-------~~~~~~~~~ir~g 456 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSG-------TSGDEDVDVLLHG 456 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSS-------CCSCHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccc-------cccccccHHHHHH
Confidence 445677788888887765410 11 222333445566777767788877776522100 00100011 1111
Q ss_pred ---HHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH----HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHH
Q 006457 193 ---SVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV----GNTLIDAYARGGHVDVSRKVFDGMIE--KD-AVTWNSIIA 262 (644)
Q Consensus 193 ---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~ 262 (644)
.+--++...++.+.. ..+..++.. .+..+ .-+|...|.-.|+-+....++..+.+ .+ +.-.-.+.-
T Consensus 457 AaLGLGla~~GS~~eev~-e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVY-EALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHSTTCCCHHHH-HHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 112223334443333 333333321 12111 12333345566777666666665422 22 222233444
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCChhhHH---HHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLS---AVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
++...|+.+.+..+.+.+. .. ..|. .-|. ++.-+|+..|+.....+++..+.... ..++.-...+.-+....|
T Consensus 533 Gll~~g~~e~~~~li~~L~-~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKML-AS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHH-HC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHH-hC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccC
Confidence 5557788888888888876 22 1122 2222 33446778888888887888877632 222222222222333467
Q ss_pred CHHHHHHHHHhcCC-CChhh--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006457 340 QVDLARKAFNQMKE-KNVRS--WTAMIAGYGMHCRA-REALDLFYKMIKAGVRPNYITFVSVLSACS 402 (644)
Q Consensus 340 ~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (644)
+.+.+.++++.+.+ .|... --++.-|....|.. .+|++++..+.. .+|..+-...+.++.
T Consensus 609 ~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 76667777765543 33322 22233333334433 567778888763 455554444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.35 E-value=5.9 Score=45.55 Aligned_cols=166 Identities=7% Similarity=-0.002 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
....++..+.+.+..+-+.++..-.+. +...--.+..+|...|++++|.+.|.+. ..++..+......+
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~-------- 882 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL-------- 882 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSH--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhh--------
Confidence 344566777788888888776655544 4444456677899999999999999887 34544332211100
Q ss_pred cHHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hhHHHHHHHHHhcCCHHH
Q 006457 305 VLRLGKCIHDQVIKM-D-LEESVIVGTSIIDMYCKCGQVDLARKAFNQM----KEKNV----RSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~ 374 (644)
.. ...+... . ...-..-|.-++..+-+.|.++.+.++-... ...+. ..|..+..++...|++++
T Consensus 883 --~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 883 --RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp --HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred --cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 00 0111111 0 1112234566777777777777766554322 22221 258888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
|...+-.+..... -...+..++..++..|..+.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9988888776433 34556667777776666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.81 E-value=8.9 Score=38.64 Aligned_cols=161 Identities=7% Similarity=0.033 Sum_probs=95.4
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHhcCCHHHHHHHHhcCC------CCC----HhHH
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFDSE-----VGVGNTLIDAYARGGHVDVSRKVFDGMI------EKD----AVTW 257 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 257 (644)
.+...+...|++..|..++..+...-...+ ..++...+..|...+++..|..++.++. .++ ..-+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 455667778999999998888755322222 2456777888999999999988887751 111 2346
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHH-----HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLL-----AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~-----a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
..++..+...+++.+|...|.+..+......|...+..++. ......... -..+.....+...-++...+..|+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~-~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL-QNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST-THHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHhhcccccccHHHHHHH
Confidence 66777888889999998888877532222233332222211 111111111 122222222222235667778888
Q ss_pred HHHHhc--CCHHHHHHHHHhcCCC
Q 006457 333 DMYCKC--GQVDLARKAFNQMKEK 354 (644)
Q Consensus 333 ~~~~~~--g~~~~A~~~~~~~~~~ 354 (644)
.+|... .+++.+.+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 888764 3567777777665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.75 E-value=1.5 Score=36.04 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHccCCH------HHHHHHHHHHhhhcCCCCC
Q 006457 390 NYITFVSVLSACSHAGLV------QEGWHWLNTMGHEFNIEPG 426 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~ 426 (644)
|..+|-..+.-..+.|++ ++.+++|++... .++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 455555555555555666 566666666544 34443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.46 E-value=2.2 Score=34.29 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhccCCC-CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 ADFVVWGSLLGACRIHK---NVDLGEIAAKKLFELEPN-NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
|+..+-..+..++.+.. +..+|+.+++.+++.+|. .-.....|+-++.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444443 233566666666655552 234455566666666666666666666653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.03 E-value=19 Score=34.33 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV 189 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~ 189 (644)
.|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|-++-.-|..... ..++++|..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~--------~~~~~~~~~ 95 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFR--------QAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHH--------HHTCCCCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHH--------HcCCCCCHH
Confidence 45567777889999999998765432 245566776655554432221100 567778887
Q ss_pred hHHHHHHHhhcCCCchH-----HHHHHHHHHHhC--CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH
Q 006457 190 AIASVLSACSRVTVNGV-----TEGAHGFVIKRG--FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIA 262 (644)
Q Consensus 190 t~~~ll~~~~~~~~~~~-----a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 262 (644)
+...++..+.....-+- ..+...+-.+.| -.-|+.....+...|.+.+++.+|+..|---.+++...+..|+.
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 77777777666554221 122222333344 23467777888888889999988888874322223356655554
Q ss_pred HHHHCC
Q 006457 263 IYAQNG 268 (644)
Q Consensus 263 ~~~~~g 268 (644)
-+...+
T Consensus 176 ew~~~~ 181 (336)
T 3lpz_A 176 EWYKQD 181 (336)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.27 E-value=7.5 Score=29.19 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766553 33332233445678999999999999999999999988755 456777788777778877
Q ss_pred cCCCCCHHHHHH
Q 006457 385 AGVRPNYITFVS 396 (644)
Q Consensus 385 ~g~~p~~~t~~~ 396 (644)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.64 E-value=22 Score=33.60 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV 189 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~ 189 (644)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++-.-|..... ..++++|..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~--------~~~~~~~~~ 93 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYD--------LAEVKVDDI 93 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHH--------HTTCCCSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHH--------HcCCCCCHH
Confidence 556677788888999999988655322 45566776665554322221100 567777877
Q ss_pred hHHHHHHHhhcCCCc-----hHHHHHHHHHHHhCC--CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH
Q 006457 190 AIASVLSACSRVTVN-----GVTEGAHGFVIKRGF--DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIA 262 (644)
Q Consensus 190 t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 262 (644)
....++..+...... ....+...+-.+.|- ..|+.....+...|.+.|++.+|+..|-.-...|...+..|+.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 777777766553321 122233333333332 2367788888899999999999998876333235566666555
Q ss_pred HHHHC---CChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 263 IYAQN---GLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 263 ~~~~~---g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
-+... |...++--..-+ .++. +...+++..|..++....
T Consensus 174 ~w~~~~~~~~~~e~dlf~~R---------------aVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAEFFSR---------------LVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHHHHHH---------------HHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHHHHHH---------------HHHH-HHHhcCHHHHHHHHHHHH
Confidence 44444 444433221111 1222 334667777777776554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.60 E-value=7 Score=29.30 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766553 33332233445678999999999999999999999988754 467888888888878887
Q ss_pred cCCCCCHHHHHH
Q 006457 385 AGVRPNYITFVS 396 (644)
Q Consensus 385 ~g~~p~~~t~~~ 396 (644)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.58 E-value=4.2 Score=33.43 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=63.1
Q ss_pred CCCCcchhHHHHHHHHHhcCCc------hHHHHHHhhcCC--CCC-cchHHHHHH------HHHcCCCchHHHHHHHHhh
Q 006457 1 MKLSKSSSVSSVVSNVDKHSTN------TNLTTLFNKYVD--KNN-VFSWNSVIA------DLARGGDSVEALRAFSSMR 65 (644)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~f~~~~~--~p~-~~~~~~li~------~~~~~g~~~~a~~~~~~m~ 65 (644)
|.+.|.++|-..+...-+.|++ +..+.+|++... +|+ -..|..-|. .+...++.++|.++|+.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467778888888888888888 777777765421 121 112222222 1123378888888888887
Q ss_pred HCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCh
Q 006457 66 KLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDV 108 (644)
Q Consensus 66 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 108 (644)
...-+- ...|......=.+.|++..|++++...+..+..|..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 642111 222222233335678888888888888887755443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=6.6 Score=38.79 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhcCCCCChhHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG----HEFNIEPGVEHY 430 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~~ 430 (644)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|++.|+... .+.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566677788888887777776642 4467778888888888888888888777654 345777776543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.10 E-value=4.2 Score=30.66 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=48.0
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (644)
+.-+..+-++.+....+-|++....+.|++|.+.+++..|..+++-+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777777778888999999999999999999999999998877543 233556766654
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=84.00 E-value=47 Score=35.14 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhCCCCC-CCeecHHHHHHHHHhC
Q 006457 109 FVSSALIDMYSKCGELSDARKLFDEIPQRI-RNIVSWTSMLTGYVQN 154 (644)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 154 (644)
.+|- +|-.+.|+|++++|.++.++..... .-...+-..+..|+..
T Consensus 154 p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 3554 6677789999999999988775431 1124677777777743
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.73 E-value=6.1 Score=29.82 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666666666777889999999999999999999999999998865433 33556776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.73 E-value=1.7 Score=36.45 Aligned_cols=122 Identities=13% Similarity=0.023 Sum_probs=64.1
Q ss_pred cCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 006457 385 AGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-------EHYGCMVDLLGRAGKLKEAYDLIEGM-- 453 (644)
Q Consensus 385 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 453 (644)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555443 34445666777788888877776654322333432 35566777788888888888777764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 454 -----KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 454 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..|+. ..++. ..... ..-..+ +.+.....-++.+|.+.|++++|..+++.+.
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCc--ccccc----ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111 10110 00000 000111 2334566779999999999999999988753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.04 E-value=7.3 Score=32.67 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMK-----EKNV-------RSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-+..+...|.++.|+-+.+.+. .+++ .+...+.+++...|++..|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455566667777666555433 1232 134445556666666666666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.00 E-value=37 Score=33.27 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=25.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
+..-|...|++.+|..++..+.++..-..| .++|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344445555555555555554433211111 23334444455555555555544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.64 E-value=8.5 Score=41.42 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=30.5
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK 454 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 454 (644)
|...|+++.|+++-++.+. ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455666666666666533 233 35566666666666666666666666664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=2.9 Score=41.42 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh-----CCCcCCC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN-----RRLAKTP 528 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 528 (644)
...++.++...|+.+++...++.++..+|-+...+..|..+|...|+..+|.+.|+...+ -|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344566677788888888888888888888888888888888888888888888887654 3665444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 644 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 40/292 (13%), Positives = 86/292 (29%), Gaps = 12/292 (4%)
Query: 229 LIDAYARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTD 285
L + G + + + + ++ + +I+ Q + +K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 286 VKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLAR 345
+ A + + + H +K D + I + + A
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 346 KAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC-SHA 404
+ Q + + R EA + K I+ +PN+ S L +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGCVFNAQ 182
Query: 405 GLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFV--V 461
G + H ++P ++ Y + ++L A A + V
Sbjct: 183 GEIWLAIHHFEKA---VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513
G+L +DL ++ EL+P+ + L+N G + E
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 48/401 (11%), Positives = 114/401 (28%), Gaps = 25/401 (6%)
Query: 114 LIDMYSKCGELSDARKLFDEIPQRI-RNIVSWTSMLTGYVQNDNAREALLLFKEFLLEES 172
L + G+ A + ++ ++ N + + + Q + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 173 ECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDA 232
A N + +V ++ + D + + L+ A
Sbjct: 65 LLAEAYSN----------LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
Query: 233 YARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT 292
G V + V + + A L + + AV
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN---FAVA 171
Query: 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352
S + G + L ++ + +D + ++ ++ + D A A+ +
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 353 EKNVRSWTAMI---AGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL-SACSHAGLVQ 408
+ Y A+D + + I+ ++P++ L +A G V
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288
Query: 409 EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE-GMKVKADFVVWGSLLG 467
E NT + + ++ G ++EA L ++V +F S L
Sbjct: 289 EAEDCYNTALRLCPTHA--DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 468 ACRIH-KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507
+ + + K+ + P + + N
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 10/184 (5%)
Query: 334 MYCKCGQVDLARKAFN---QMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390
++ G++ LA F + + ++ + A+ + + + +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236
Query: 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDL 449
+ ++ GL+ ++P + Y + + L G + EA D
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 450 IE--GMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507
+L R N++ +K E+ P H L+++ G
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 508 RWED 511
+ ++
Sbjct: 354 KLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 644 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.19 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.5 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.46 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.41 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.13 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.4e-20 Score=186.68 Aligned_cols=374 Identities=12% Similarity=0.071 Sum_probs=266.5
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChh
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAR 158 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 158 (644)
...+.+.|++++|.+.++.+++.. +-+...+..+...|.+.|++++|...|++..+. +.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344556788888888888887764 335667777777788888888888888776544 235667777778888888888
Q ss_pred HHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 006457 159 EALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 159 ~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
+|+..+..... .. +.+..........+...+.
T Consensus 85 ~A~~~~~~~~~-----------------------------------------------~~-~~~~~~~~~~~~~~~~~~~ 116 (388)
T d1w3ba_ 85 EAIEHYRHALR-----------------------------------------------LK-PDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHH-----------------------------------------------HC-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccc-----------------------------------------------cc-ccccccccccccccccccc
Confidence 88888777651 11 1111111111222222222
Q ss_pred HHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
...+....... .......+..........+....+...+.... . ..+-+...+..+...+...|.++.|...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 194 (388)
T d1w3ba_ 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI-E-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH-H-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHhh-c-cCcchhHHHHhhcccccccCcHHHHHHHHHH
Confidence 22222221111 22233444445555566666666666666654 1 1223445566666667777777777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
.++.. +.+...+..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|++..+.. +-+..
T Consensus 195 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T d1w3ba_ 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 76654 34566777888888889999999988887653 456678888889999999999999999988842 33567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 470 (644)
++..+...+...|++++|.+.++.... ..+.+...+..+...+.+.|++++|++.|++. ...|+ ..+|..+...+.
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 350 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888889999999999999999998865 34556788889999999999999999999885 55664 568888999999
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
..|++++|...++++++++|+++.++..|+.+|.+.|+
T Consensus 351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.3e-19 Score=177.23 Aligned_cols=353 Identities=11% Similarity=0.063 Sum_probs=287.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH
Q 006457 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV 225 (644)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 225 (644)
+...+.+.|++++|++.|+++... .| +...+..+...+...|+++.|...+..+++.. +.+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 69 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 445677889999999999998631 24 45677777788899999999999999998874 445678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
+..+...|.+.|++++|...+..... .+...+..........+....+........ .. .................
T Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QY-NPDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HH-CTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccccccccccc
Confidence 89999999999999999999988733 345555556666666666666666666554 22 23344444555556667
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.+....+........... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 226 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHH
Confidence 777888888887777654 45567778889999999999999999987653 35678999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVK 456 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~ 456 (644)
++....+ +.+...+..+...+...|++++|...|+.+.+ +.| +...+..+...|...|++++|.+.++.. ..+
T Consensus 227 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 302 (388)
T d1w3ba_ 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 9998864 45677788888999999999999999999865 345 4788999999999999999999999876 234
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999998874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7e-13 Score=129.17 Aligned_cols=239 Identities=12% Similarity=0.019 Sum_probs=153.9
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
....+.+.|++++|+..|+++. .. -+-+..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al-~~-~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAV-QQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4455666666777777666665 21 12234455555566666666666666666665543 233445555555555556
Q ss_pred CHHHHHHHHHhcCC--CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 340 QVDLARKAFNQMKE--KNVR-SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 340 ~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
++++|.+.+++... |+.. .+....... ...+.......+..+...+..+++...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 66655555554432 1100 000000000 000000011112223344566778888887
Q ss_pred HhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 417 MGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
+.+...-.++..++..+...+.+.|++++|...|++. ...| +..+|..+...+...|++++|...++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7654333446778888999999999999999999886 3344 5678999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++..++.+|.+.|++++|.+.+++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.1e-12 Score=125.73 Aligned_cols=266 Identities=9% Similarity=0.005 Sum_probs=191.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 228 TLIDAYARGGHVDVSRKVFDGMI--EK-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
.....|.+.|++++|...|+++. .| +..+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccc
Confidence 46677899999999999999983 33 67899999999999999999999999987322 335667788888999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
++++|...+..+....... ........... . ..+.......+..+...+...+|.+.|.+..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999988754211 11110000000 0 00111111122233445667788888888876
Q ss_pred cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 006457 385 AG-VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVV 461 (644)
Q Consensus 385 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 461 (644)
.. -.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 43 2345677888888899999999999999998653 2234778889999999999999999999876 3445 4668
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh-----------HHHHHHHHhhcCCchHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY-----------HVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 514 (644)
|..+..+|...|++++|+..++++++++|++... +..+..++...|+.+.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999998877543 3445666666677665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.4e-08 Score=98.98 Aligned_cols=261 Identities=14% Similarity=0.037 Sum_probs=169.2
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHccccHHHHHHHHHHHHHhCC--C---CchhHHHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL--E---ESVIVGTSII 332 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~---~~~~~~~~li 332 (644)
...+...|++++|++++++..+...-.++ ...+..+...+...|++++|...+....+... . .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34455666666666666665521110000 12344455556666666666666666554211 1 1123344566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKE-------KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV----RPNYITFVSV 397 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~l 397 (644)
..|...|++..|...+..... +. ...+..+...+...|+++.+...+.+...... .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777888777777665431 11 12455666778888999999988888776422 2234455566
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEP-----GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA-----DFVVWGSLL 466 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll 466 (644)
...+...+....+...+........-.. ....+..+...+...|++++|...+++.- ..| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6677788888888888776643222111 13345666778889999999999998762 221 234566677
Q ss_pred HHHHhcCChhHHHHHHHHhhc------cCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 467 GACRIHKNVDLGEIAAKKLFE------LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++...|++++|...+++++. ..|.....+..++.+|...|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999998874 3466677889999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.7e-08 Score=96.49 Aligned_cols=187 Identities=10% Similarity=0.019 Sum_probs=147.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-N-VRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
+..+.+..++++.++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888998888766666777888888999999999999999998754 2 3 346889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 006457 380 YKMIKAGVRPNYITFVSVLS-ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----K 454 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 454 (644)
+++.+.+ +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998764 223334433333 234568999999999999764 3445788999999999999999999999975 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 455 VKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 455 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..|+ ...|...+..-..+|+.+.+..+.+++.++.|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3433 45899999888999999999999999988887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1e-07 Score=92.65 Aligned_cols=285 Identities=9% Similarity=0.000 Sum_probs=168.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CC--C----HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHH
Q 006457 230 IDAYARGGHVDVSRKVFDGMI--EK--D----AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVL 297 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~~~--~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll 297 (644)
...+...|++++|.++|++.. .| + ..+++.+...|...|++++|+..|++..+...-.++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344555666666666665541 11 1 234555566666666666666666655421111111 12334444
Q ss_pred HHHHccccHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhhHHHH
Q 006457 298 LAIAHLGVLRLGKCIHDQVIKM----DLEES---VIVGTSIIDMYCKCGQVDLARKAFNQMKE--------KNVRSWTAM 362 (644)
Q Consensus 298 ~a~~~~~~~~~a~~i~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 362 (644)
..+...|++..+...+...... +.... ...+..+...|...|+++.+...+..... ....++..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5555666666666666555431 11111 22444566777788888888877766542 122345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhHHHHHH
Q 006457 363 IAGYGMHCRAREALDLFYKMIKA----GVRPN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP--GVEHYGCMV 434 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 434 (644)
...+...|+...+...+.+.... +..+. ...+..+...+...|++++|...+........-.+ ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66677788888888887766542 11111 22345556667788899999988887743211111 234556678
Q ss_pred HHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---------chhHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-------KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---------CGYHV 497 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~ 497 (644)
..|...|++++|...+++. +..|+ ..+|..+...+...|++++|...+++++++.+.. .....
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 8888999999998888765 33333 3467777788899999999999999988864321 12233
Q ss_pred HHHHHHhhcCCchHHHH
Q 006457 498 LLSNIYANAGRWEDVER 514 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~ 514 (644)
.+...+...++.+++.+
T Consensus 339 ~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhcCCChHHHH
Confidence 34445566677777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=8.8e-09 Score=95.77 Aligned_cols=222 Identities=12% Similarity=-0.033 Sum_probs=134.7
Q ss_pred hhHHHHHHHHhHHcCCCCC--ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006457 270 AAEALDVFDQMVKSTDVKC--NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347 (644)
Q Consensus 270 ~~~A~~~~~~m~~~~~~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 347 (644)
.+.++.-+.+........+ ...++..+...+.+.|++++|...|...++.. +.+..+++.+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555555552222121 12345555666777777777777777777754 45667777888888888888888888
Q ss_pred HHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 348 FNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 348 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
|++..+ | +..+|..+...|...|++++|++.|++..+.. +.+......+..++.+.+..+....+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 887763 3 45678888888888888889998888888753 33444444444455555555555555554422 22
Q ss_pred CChhHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 425 PGVEHYGCMVDLLGRA----GKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 425 p~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
+....++. +..+... +..+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222222 2222211 1222222222211 11222 336777888888999999999999999999998754443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=9.1e-09 Score=98.61 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHC-RAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
++.+...+.+.+.+++|.++++++.+ | +...|+....++...| ++++|+..+++..+.. +-+..+|..+...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHh
Confidence 33344445555555666666555542 2 3345555555555544 3566666666655532 2234455555555666
Q ss_pred cCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKN------ 474 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~------ 474 (644)
.|++++|+..++.+.+ +.| +...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 125 l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 125 LRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 6666666666666543 233 3555666666666666666666666554 2233 34455555444433332
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+++|...+.++++++|++...+..++.++...| .+++.+.++...
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 455666666666666666666666666554443 355555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.4e-08 Score=93.69 Aligned_cols=174 Identities=12% Similarity=0.136 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006457 327 VGTSIIDMYCKCG-QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS 402 (644)
Q Consensus 327 ~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (644)
.|+.....+...| ++++|...++...+ .+..+|+.+...+...|++++|++.++++.+.. +-+...|..+...+.
T Consensus 79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~ 157 (315)
T d2h6fa1 79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ 157 (315)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHH
Confidence 3444444444443 25555555554432 244556666666666666666666666666532 224556666666666
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 006457 403 HAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGK------LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHK 473 (644)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 473 (644)
+.|++++|++.++.+++ +.| +...|+.+..++.+.|. +++|++.+.++ ...| +...|+.+...+.. .
T Consensus 158 ~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~ 233 (315)
T d2h6fa1 158 EFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-R 233 (315)
T ss_dssp HHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-T
T ss_pred HHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-c
Confidence 66666666666666643 233 34455555555444443 56677666654 3344 56677777665544 4
Q ss_pred ChhHHHHHHHHhhccCCCCc--hhHHHHHHHHhh
Q 006457 474 NVDLGEIAAKKLFELEPNNC--GYHVLLSNIYAN 505 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~ 505 (644)
..+++...++++.++.|+.. ..+..++.+|..
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 234 GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 46778888888888777643 344556666644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2e-09 Score=104.60 Aligned_cols=262 Identities=8% Similarity=-0.063 Sum_probs=179.6
Q ss_pred HHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHH----------HHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHH
Q 006457 233 YARGGHVDVSRKVFDGMI--EK-DAVTWNSIIAI----------YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLA 299 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 299 (644)
..+.+..++|.++++... .| +...|+..-.. +...|.+++|+..++...+. -+-+...+..+..+
T Consensus 39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~ 116 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHH
Confidence 333344467777777663 23 33445433222 23344577888888888622 23344455555556
Q ss_pred HHccc--cHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHH
Q 006457 300 IAHLG--VLRLGKCIHDQVIKMDLEESVIVG-TSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAR 373 (644)
Q Consensus 300 ~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 373 (644)
+...+ +.+.+...+..+++... ++...+ ..+...+...|..++|...++...+. +..+|+.+...+.+.|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence 55554 47888888888888653 334443 34556777889999999999988753 5678888999999999988
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 374 EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+|...+++..+. .|+.. .+...+...+..+++...+..... .-+++...+..++..+...|+.++|.+.+.+.
T Consensus 196 ~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 196 DSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 887766655442 23222 223334555666777777777754 23344556667777888889999999998876
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 454 -KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 454 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
+..| +..+|..+...+...|+.++|...++++++++|.+...|..|...+.
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 4455 34578888899999999999999999999999998888888877665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.1e-08 Score=95.17 Aligned_cols=213 Identities=10% Similarity=-0.014 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 306 LRLGKCIHDQVIKMDLEE---SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.+.+..-++++....... ...++..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555555432111 234666788899999999999999998763 46789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA 457 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 457 (644)
++..+.. +-+..++..+..++...|++++|...|+...+. .| +......+...+.+.+..+.+..+..... ..+
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999853 234667888899999999999999999998663 34 34444444455556665555544443331 122
Q ss_pred CHHHHHHHHHHHHhc----CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 458 DFVVWGSLLGACRIH----KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+...++. +..+... +..+.+...+.......|....++..++.+|...|++++|.+.+++.....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222 2222211 223333333333344557777788899999999999999999999987543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=1.3e-07 Score=90.09 Aligned_cols=182 Identities=7% Similarity=-0.016 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 339 GQVDLARKAFNQMKE----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 339 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
+..++|..+|++..+ .+...|...+..+...|+.+.|..+|+++.+.........|...+..+.+.|.++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 446788888887543 3556788889999999999999999999987532223557889999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHH-hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLL-GRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+.+.+. .+.+...|....... ...|+.+.|..+|+.+ . ...+...|...+......|+.+.|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998652 233445555555443 3468999999999987 2 2336779999999999999999999999999998765
Q ss_pred Cch----hHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 492 NCG----YHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 492 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 5666666667889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=3.1e-09 Score=103.27 Aligned_cols=252 Identities=8% Similarity=-0.046 Sum_probs=177.1
Q ss_pred HHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhh-HHH---HHHH-------HHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 259 SIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT-LSA---VLLA-------IAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~---ll~a-------~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
.++......+..++|++++.+.. ...|+..+ |+. ++.. ....|.++++...++.+.+.. +.+...
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l---~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHH---HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33333333444589999999987 24566544 222 2222 233455788888888888765 456666
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 328 GTSIIDMYCKCG--QVDLARKAFNQMKE---KNVRSWTA-MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 328 ~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
+..+..++...+ ++++|...++++.+ ++...|.. ....+...|.+++|+..++++.+.. +-+...|..+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 666766666665 47899988888753 35556554 4467777899999999999888753 33567788888888
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
...|++++|...+..... +.|+ ...+...+...+..++|...+... ...++...+..+...+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 888888777555544322 1111 122334455667777777776654 22334556667777888889999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..+.+..+.+|.+..++..++.+|...|++++|.+.+++..+
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.8e-06 Score=75.38 Aligned_cols=141 Identities=10% Similarity=-0.062 Sum_probs=100.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006457 332 IDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGW 411 (644)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 411 (644)
...+...|+++.|.+.|.++..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778999999999999888888889999999999999999999999998853 345678888888899999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
..|++.... .+++... .|...|. ..+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 988887542 1111100 0000000 01111 23455566677778888888888888888777
Q ss_pred CC
Q 006457 491 NN 492 (644)
Q Consensus 491 ~~ 492 (644)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=2.8e-07 Score=81.49 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=59.3
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
|+...+......|.+.|++++|+..|+++ ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444555556666666666666666554 2223 445566666666666666666666666666666666666666666
Q ss_pred HhhcCCchHHHHHHHHHh
Q 006457 503 YANAGRWEDVERTRSLMK 520 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~ 520 (644)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=6.4e-07 Score=71.12 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44455666666666666654 2223 455666666666666666677777777666666666666667666777777777
Q ss_pred HHHHHHHHhh
Q 006457 512 VERTRSLMKN 521 (644)
Q Consensus 512 a~~~~~~m~~ 521 (644)
|...++...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.3e-06 Score=69.18 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=85.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHKN 474 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~ 474 (644)
-...+...|++++|+..|+..++. -+.+...|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 355677888888888888888652 2335777888888999999999999988876 333 367789999999999999
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+++|+..++++++++|+++.++..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999988888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=2.1e-06 Score=80.72 Aligned_cols=189 Identities=10% Similarity=0.023 Sum_probs=128.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVR-PNYITFVS 396 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ 396 (644)
..+.|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45678888999999888887653 22 257888999999999999999999986642 211 11345666
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-------H-HHH
Q 006457 397 VLSACS-HAGLVQEGWHWLNTMGHEF---NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKAD-------F-VVW 462 (644)
Q Consensus 397 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-------~-~~~ 462 (644)
+...|. ..|++++|.+.++....-. +..+ -..++..+...|.+.|++++|.+.|+++. ..|+ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998875321 1122 14567888999999999999999998761 1111 1 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCCCch-----hHHHHHHHHhh--cCCchHHHHHHHHH
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPNNCG-----YHVLLSNIYAN--AGRWEDVERTRSLM 519 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 519 (644)
...+..+...|+.+.|...++++.+++|..+. ....|+.+|.. .+++++|...++.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555667889999999999999999875433 23445555544 45678888777543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=5.7e-07 Score=70.77 Aligned_cols=88 Identities=17% Similarity=0.049 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (644)
.+...+.+.|++++|...|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788999999999999986 3445 5779999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 006457 510 EDVERTRSLM 519 (644)
Q Consensus 510 ~~a~~~~~~m 519 (644)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.9e-06 Score=71.50 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=71.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCch
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (644)
....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|++..++..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 355677888888888888776 3334 56678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q 006457 511 DVERTRSLMKN 521 (644)
Q Consensus 511 ~a~~~~~~m~~ 521 (644)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=9.9e-07 Score=77.82 Aligned_cols=114 Identities=6% Similarity=-0.198 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006457 389 PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 466 (644)
|+...+......+.+.|++++|+..|..++.. -+.+...|..+..+|.+.|++++|+..|+++ .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55555666666777777777777777766542 1234666777777777777777777777765 4455 355777777
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
.++...|++++|...++++++++|++...+...+..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 77777788888888888877777765544444444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.2e-06 Score=74.77 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=81.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 434 VDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
...+...|++++|++.|+++. .|+..+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456778999999999999974 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 006457 514 RTRSLMKNR 522 (644)
Q Consensus 514 ~~~~~m~~~ 522 (644)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.8e-06 Score=69.60 Aligned_cols=116 Identities=6% Similarity=-0.079 Sum_probs=89.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 475 (644)
...|.+.|++++|...|+.+.+- -+-+...|..+...|...|++++|.+.|+++ ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 45677888888888888888652 1235777888888888899999999888876 3445 456899999999999999
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHHHHH--hhcCCchHHHHH
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLSNIY--ANAGRWEDVERT 515 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 515 (644)
++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988887776554 333445555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=9.8e-06 Score=75.94 Aligned_cols=173 Identities=14% Similarity=-0.002 Sum_probs=129.5
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 006457 340 QVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRPN-YITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 340 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
++++|..+|.+ ....|...|++++|++.|.+..+. +-+|+ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777776554 567899999999999999998753 22222 357888999999999999999999
Q ss_pred HHHhhhcCCCC----ChhHHHHHHHHHhh-cCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 006457 415 NTMGHEFNIEP----GVEHYGCMVDLLGR-AGKLKEAYDLIEGMK----VKAD----FVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 415 ~~~~~~~~~~p----~~~~~~~li~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
+....-+.-.. ...++..+...|.. .|++++|.+.+++.. ...+ ..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 97754221111 24556667777754 699999999998761 1111 33677788999999999999999
Q ss_pred HHHhhccCCCCch-------hHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 482 AKKLFELEPNNCG-------YHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 482 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
++++....|.++. .+...+..+...|+++.|.+.++...+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999998876542 34566677888999999999999887543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.2e-06 Score=67.19 Aligned_cols=106 Identities=13% Similarity=-0.099 Sum_probs=78.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL---KEAYDLIEGM-KVKADF---VVWGSLLG 467 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 467 (644)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|+.+++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777778888888888887552 233567777788888765544 4688888875 333433 36778889
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
+|...|++++|+..++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999987766665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.2e-05 Score=68.48 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
.+......+.+.|++++|+..|++.++.- |.. .+..+.-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 44555667777888888888888776531 100 00000000111111 123566788889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 438 GRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
.+.|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++.....+..+....+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 4455 6778999999999999999999999999999999999999998887766655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.3e-05 Score=68.11 Aligned_cols=62 Identities=11% Similarity=-0.065 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35667788889999999999999999999999999999999999999999999999999875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=2e-05 Score=65.59 Aligned_cols=83 Identities=18% Similarity=0.073 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEE
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKV 539 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 539 (644)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 366778888899999999999999999999999999999999999999999999999887753
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 006457 540 HAFLVGDKEHPQHEKIYEYLEELNVKLQE 568 (644)
Q Consensus 540 ~~f~~~~~~~~~~~~i~~~~~~l~~~~~~ 568 (644)
.|...++...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 24555666666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0016 Score=60.91 Aligned_cols=278 Identities=10% Similarity=0.059 Sum_probs=149.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCcc
Q 006457 106 RDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVF 185 (644)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 185 (644)
|+..--..+...|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~~----------------- 67 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKAN----------------- 67 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHHT-----------------
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHcC-----------------
Confidence 3333344556666777888888888877766 7777788888888888888877643
Q ss_pred CCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCHhHHHHHHH
Q 006457 186 VDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM---IEKDAVTWNSIIA 262 (644)
Q Consensus 186 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 262 (644)
+..+|..+..+|........+. +.......++.....++..|-..|.+++...+++.. ...+...++.++.
T Consensus 68 -~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ 141 (336)
T d1b89a_ 68 -STRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 141 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHH
Confidence 4556777777776665543321 112223345555567888888888888888888865 3346667888888
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
.|++.+ .++-++.++... +..-...++..|...+-+ .-++-.|.+.|+++
T Consensus 142 lyak~~-~~kl~e~l~~~s-------~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~ 191 (336)
T d1b89a_ 142 LYSKFK-PQKMREHLELFW-------SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYD 191 (336)
T ss_dssp HHHTTC-HHHHHHHHHHHS-------TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHH
T ss_pred HHHHhC-hHHHHHHHHhcc-------ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHH
Confidence 888764 445555444431 112223344555444433 33555666777777
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HccCCHHH
Q 006457 343 LARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC-------------SHAGLVQE 409 (644)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-------------~~~g~~~~ 409 (644)
+|..+.-.-. ++.......+..+.+.++.+...++.....+. .|+. .+.+|... .+.+++..
T Consensus 192 ~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~l 266 (336)
T d1b89a_ 192 NAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPL 266 (336)
T ss_dssp HHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHH
Confidence 6665543221 12223334455555555555544444443332 2322 23333333 34444444
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
...+++.... .+ +..+.++|.+.|...++++.-.+.++.
T Consensus 267 i~p~Le~v~~-~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 267 VKPYLRSVQN-HN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp THHHHHHHHT-TC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 4444444322 12 345677777777777776655555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.99 E-value=0.00089 Score=61.00 Aligned_cols=227 Identities=11% Similarity=-0.050 Sum_probs=124.9
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVG 328 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~ 328 (644)
|+..+..|...+.+.+++++|++.|++.. +.| +...+..+...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--------
Confidence 45566666666777777777777777775 333 33333333333322 223444444444433322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--H
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLSAC--S 402 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~ 402 (644)
+...+..+...+.. .++.+.|...+++....|..+. .......... .
T Consensus 69 --------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a-~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG-CASLGGIYHDGKV 121 (265)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHCSS
T ss_pred --------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH-HHhhcccccCCCc
Confidence 22222233222222 3455666666666666553221 1111111111 1
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 006457 403 HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKN 474 (644)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~ 474 (644)
.......+...+..... ..+...+..|...|.. ..+...+...++......+...+..+...+.. ..|
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23345555555555422 2345555566666654 34556666666655333356666566555543 568
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
.+.|...++++.+.+ ++..+..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 889999999988875 45678888888875 3478899999998887764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=5.6e-05 Score=63.90 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 428 EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
..|..+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|...++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788889999999999999876 3333 677899999999999999999999999999999999999988888777
Q ss_pred cCCchH-HHHHHHHHh
Q 006457 506 AGRWED-VERTRSLMK 520 (644)
Q Consensus 506 ~g~~~~-a~~~~~~m~ 520 (644)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 455555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=3e-05 Score=65.77 Aligned_cols=64 Identities=5% Similarity=-0.050 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3446777888888999999999999999999999999999999999999999999999998875
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.001 Score=62.14 Aligned_cols=220 Identities=12% Similarity=0.097 Sum_probs=126.2
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
.||..-...+...|-+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+.. +..+|..+..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 4555556667777888899999999987654 26778888889999999888876542 45688888888
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
|........+ .+.......++.....++..|-..|.++....+++..... ..+...++.++..|++.+ .++.+
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 8776655332 2222233345555567888899999999999988865443 356667888888888865 45555
Q ss_pred HHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHH
Q 006457 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDV 241 (644)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 241 (644)
+.++... +......+++.|...+ .|..++..|.+.|.+++
T Consensus 153 e~l~~~s------------------~~y~~~k~~~~c~~~~----------------------l~~elv~Ly~~~~~~~~ 192 (336)
T d1b89a_ 153 EHLELFW------------------SRVNIPKVLRAAEQAH----------------------LWAELVFLYDKYEEYDN 192 (336)
T ss_dssp HHHHHHS------------------TTSCHHHHHHHHHTTT----------------------CHHHHHHHHHHTTCHHH
T ss_pred HHHHhcc------------------ccCCHHHHHHHHHHcC----------------------ChHHHHHHHHhcCCHHH
Confidence 5555431 1122233344443333 24456677777888887
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 242 SRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 242 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
|..+.=.=+ ++..-....+..+.+.++++...++.....
T Consensus 193 A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 193 AIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHH
Confidence 766543211 112222334555566666555555444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.00011 Score=62.14 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
....|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|+++.|+..++++++++|+++.+...+..++
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3556777888999999999999999876 4555 5668999999999999999999999999999999998888888776
Q ss_pred hhcCCchH
Q 006457 504 ANAGRWED 511 (644)
Q Consensus 504 ~~~g~~~~ 511 (644)
.......+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.8e-05 Score=63.56 Aligned_cols=91 Identities=8% Similarity=-0.003 Sum_probs=75.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch-------hHHHHH
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG-------YHVLLS 500 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 500 (644)
+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888999999999999876 3334 5778889999999999999999999999999987765 455667
Q ss_pred HHHhhcCCchHHHHHHHHHh
Q 006457 501 NIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~ 520 (644)
..+...+++++|.+.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888899999999998765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=9.3e-05 Score=62.49 Aligned_cols=61 Identities=8% Similarity=-0.066 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566778889999999999999999999999999999999999999999999999999875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=3.4e-06 Score=85.78 Aligned_cols=92 Identities=9% Similarity=-0.118 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 428 EHYGCMVDLLGRAGKLKEAYDLIEGMKVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
..+..+...+.+.|+.++|...+++.- .++ ..++..+...+...|++++|...++++++++|++...|..|+.+|...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp ----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 334444445555555555544433220 111 123444455555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHh
Q 006457 507 GRWEDVERTRSLMK 520 (644)
Q Consensus 507 g~~~~a~~~~~~m~ 520 (644)
|+..+|...+.+..
T Consensus 200 ~~~~~A~~~y~ral 213 (497)
T d1ya0a1 200 GDHLTTIFYYCRSI 213 (497)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00019 Score=56.48 Aligned_cols=96 Identities=10% Similarity=-0.064 Sum_probs=66.6
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhcCCCC-----hhhHHHHHHH
Q 006457 294 SAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV---DLARKAFNQMKEKN-----VRSWTAMIAG 365 (644)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~ 365 (644)
..+++.+...+++++|++.|+..++.+ +.+..++..+..++.+.++. ++|..+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356667777788888888888887766 45666666777777765544 45777787776432 1256677778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 8888888888888888877 356544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00021 Score=59.10 Aligned_cols=126 Identities=10% Similarity=-0.095 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
..+......+.+.|++.+|+..|.+.+.. -|... ...-......... ....+|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 35666677778888888888888887752 11000 0000000000000 113467778889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
|.+.|++++|++.++++ ...| +..+|..+..++...|+++.|...++++++++|+++.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999886 4445 6779999999999999999999999999999999988877776554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.71 E-value=0.00013 Score=56.62 Aligned_cols=88 Identities=9% Similarity=-0.075 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR 439 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 439 (644)
.+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..|+...+ +.| +...+..+...|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 34455566666666666666666642 12455666666666666666666666666643 233 35566666666666
Q ss_pred cCCHHHHHHHHHh
Q 006457 440 AGKLKEAYDLIEG 452 (644)
Q Consensus 440 ~g~~~~A~~~~~~ 452 (644)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=0.00024 Score=60.32 Aligned_cols=113 Identities=12% Similarity=-0.067 Sum_probs=79.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
........|++++|.+.|..... +.+.... ..+...........-++.. ....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l-----~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALR---EWRGPVL-----DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT---TCCSSTT-----GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---hCccccc-----ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 33566778888888888888754 2222110 0000000111111111111 2346788889999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|...++++++++|.+...|..++.+|...|++++|.+.|+.+.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999854
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.52 E-value=0.029 Score=50.35 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=65.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHH----CCChhHHHHHHHHhHHcCCCCCChhhHHHH
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQ----NGLAAEALDVFDQMVKSTDVKCNAVTLSAV 296 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l 296 (644)
|+..+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+.... ..+ +......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~---~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-ccc---ccchhhcc
Confidence 455677788888999999999999998843 477777777777776 567888888888876 444 22223333
Q ss_pred HHHHH----ccccHHHHHHHHHHHHHhC
Q 006457 297 LLAIA----HLGVLRLGKCIHDQVIKMD 320 (644)
Q Consensus 297 l~a~~----~~~~~~~a~~i~~~~~~~~ 320 (644)
...+. ...+.+.|...++...+.|
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh
Confidence 33222 2456677777777777665
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.00011 Score=60.13 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=73.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------CHHHHHHHHHHHhhhcCCCC-ChhHHHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG----------LVQEGWHWLNTMGHEFNIEP-GVEHYGCMV 434 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 434 (644)
|-+.+.+++|+..|++..+.. +-+...+..+..++...+ .+++|+..|+.+++ +.| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445566777777777777743 334556666665655432 23445555555432 233 244444444
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.+|...|++. ++... ..++++.|.+.|+++++++|++..++..|... ..|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 4443333211 11100 11246889999999999999998777777654 46667
Q ss_pred HHHHHhhCCC
Q 006457 515 TRSLMKNRRL 524 (644)
Q Consensus 515 ~~~~m~~~~~ 524 (644)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777666664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00018 Score=59.72 Aligned_cols=88 Identities=13% Similarity=-0.065 Sum_probs=62.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--------
Q 006457 434 VDLLGRAGKLKEAYDLIEGM----KVKAD----------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN-------- 491 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------- 491 (644)
...+.+.|++++|++.|++. +..|+ ..+|+.+..++...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445556666666666554 11121 356777888888888888888888888765332
Q ss_pred ---CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 492 ---NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 492 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
....+..++.+|...|++++|.+.+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123577899999999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00071 Score=53.76 Aligned_cols=91 Identities=10% Similarity=-0.036 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVD 435 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~ 435 (644)
.+...|.+.|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|+..++.++.-..-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666542 234555555666666666666666666655321000011 123444445
Q ss_pred HHhhcCCHHHHHHHHHh
Q 006457 436 LLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~ 452 (644)
.+...+++++|.+.|++
T Consensus 88 ~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 55555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00036 Score=52.08 Aligned_cols=72 Identities=18% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM----K----VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666677777777777777654 1 1222 457888999999999999999999999999999988877775
Q ss_pred H
Q 006457 501 N 501 (644)
Q Consensus 501 ~ 501 (644)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.19 E-value=0.003 Score=53.21 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhcCCCCChhHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG----HEFNIEPGVEHY 430 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~~ 430 (644)
+..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+.+. ++.|+.|+..+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 3567778888999999999999999998853 4477889999999999999999999888874 346888887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.17 E-value=0.00013 Score=59.73 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=56.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 439 RAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRI----------HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
|.+.+++|++.|++. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 444455555555544 2223 33344444444432 24467899999999999999999999999999887
Q ss_pred CC-----------chHHHHHHHHHhh
Q 006457 507 GR-----------WEDVERTRSLMKN 521 (644)
Q Consensus 507 g~-----------~~~a~~~~~~m~~ 521 (644)
|+ +++|.+.+++..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc
Confidence 64 5778888887765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00024 Score=71.66 Aligned_cols=224 Identities=8% Similarity=-0.079 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCCC-ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 206 VTEGAHGFVIKRGFDSE-VGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAV---TWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 206 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
+|.+.++.+.+. .|+ ...+..+..+|...|++++| |+++...|+. .++. ....-...+..+++.++...
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 355666666543 222 33344455566666666665 4444222221 1111 01111112455666676665
Q ss_pred HcCCCCCChhhHHHHHHHH--HccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hh
Q 006457 282 KSTDVKCNAVTLSAVLLAI--AHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV-RS 358 (644)
Q Consensus 282 ~~~~~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~ 358 (644)
.....++..-....+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...+.....++. .+
T Consensus 77 -k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 154 (497)
T d1ya0a1 77 -KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154 (497)
T ss_dssp -SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHH
T ss_pred -ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHH
Confidence 333334433222222221 12233333333333322221 23444556667777777777777766655443332 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
+..+...+...|++++|+..|++..+.. +-+...|+.+...+...|+..+|...|.+... --+|-...+..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 6667777888888888888888887742 33456788888888888888888888877744 23455667777776665
Q ss_pred hcC
Q 006457 439 RAG 441 (644)
Q Consensus 439 ~~g 441 (644)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.10 E-value=0.0006 Score=61.79 Aligned_cols=125 Identities=13% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 445 (644)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45688888888888888852 44667888888888888888888888888854 3554 4455555555555555554
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 446 AYDLIEGM--KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 446 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
+..-.... ...|+ ...+......+...|+.++|...++++.++.|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 43332221 11232 2233444566778899999999999998888876544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0016 Score=48.31 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-------chhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-------CGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|.+.+++..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3345567888999999999999999999876543 35788999999999999999999999875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.88 E-value=0.0032 Score=51.80 Aligned_cols=32 Identities=16% Similarity=-0.193 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.+..+..++...|++++|...|++++++.|..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56677888889999999999999998876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.65 E-value=0.00075 Score=61.13 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=85.1
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.+.|++++|+..++..++ .-+-+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999976 23446899999999999999999999999987 45565 345555545544433333332
Q ss_pred HHHHHhhc-cCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 480 IAAKKLFE-LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 480 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
........ .+|++...+...+..+...|+.++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22222111 235555666677888999999999999999987643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.19 E-value=0.77 Score=34.38 Aligned_cols=141 Identities=11% Similarity=0.049 Sum_probs=101.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
+...|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 34567788888888887763 34555666665555566666666677666332222 35666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
....+-.+.. +..-.+.-+.....+|.-+.-.++++.+++-+.-+|....-++++|.+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n~--~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 6666666642 33445566788888999999999999988877667889999999999999999999999999999974
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.50 E-value=0.61 Score=36.02 Aligned_cols=50 Identities=10% Similarity=-0.082 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHhhccCCCCchhHHHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 473 KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
.|.+.|.+.++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35666777777766543 34556667776665 3467777777777766664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=4.7 Score=38.34 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
...+..+.+.++++.....+..-+ .+...-.....+....|+..+|...+..+-
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW 129 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444667888999988777765433 245555567788889999999999888876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.21 Score=37.83 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=25.7
Q ss_pred hhHHHHHHHHhhccCCCCc-hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 475 VDLGEIAAKKLFELEPNNC-GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++|+.+++++++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555555432 3445555556666666666666555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.64 E-value=1 Score=34.60 Aligned_cols=111 Identities=14% Similarity=-0.003 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEA 446 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 446 (644)
++++|+++|++..+.|.. .. ...+. .....+.++|..++++..+ .| ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 456677777777666522 21 11121 2334566777777776644 23 34444445555543 3456777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCC
Q 006457 447 YDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 490 (644)
.++|++.-..-++.....|...|.. ..|.++|...++++.++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777765222244445555554443 3577788888887776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.30 E-value=2.1 Score=31.95 Aligned_cols=119 Identities=13% Similarity=-0.026 Sum_probs=78.6
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---------------------CCCHhH
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---------------------EKDAVT 256 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------~~~~~~ 256 (644)
+.-.|..+++.++.....++. +..-||.+|--....-+-+...++++.+- ..+...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 344678888888888877653 34445555544444444444444444431 112334
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL 321 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 321 (644)
.+..+....++|+-++-.++++.+. . +-+|++.....+..||.+.|+..++.+++.++.+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~-k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREIL-K-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH-h-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 4556777888888888888888865 3 5567777788888888888888888888888887774
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.41 E-value=1.1 Score=33.77 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 426 GVEHYGCMVDLLGRAG---KLKEAYDLIEGM-KVKA-DF-VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
++.+--....++.++. ++++++.++++. ...| +. ..|-.|.-+|.+.|+++.|...++++++++|++..+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3334333444444443 344566666554 1223 22 466667778888889999999999999999987544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=15 Score=34.47 Aligned_cols=351 Identities=9% Similarity=-0.030 Sum_probs=190.9
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCC-ccCCHhhH
Q 006457 113 ALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDN-VFVDSVAI 191 (644)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~-~~p~~~t~ 191 (644)
..+..+.+.+++......+..-+ .+...-.....+....|+...|...+...- ..| ..|
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p---~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW------------~~~~~~p----- 136 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP---GTTEAQCNYYYAKWNTGQSEEAWQGAKELW------------LTGKSQP----- 136 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC---SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------SCSSCCC-----
T ss_pred HHHHHHHhccCHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH------------hcCCCCc-----
Confidence 34556677788777666554322 344444456777888899989988888765 222 222
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChh
Q 006457 192 ASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAA 271 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 271 (644)
+....++....+.|. .+...+-.-+......|+...|..+...++.........++..... ..
T Consensus 137 -------------~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~ 199 (450)
T d1qsaa1 137 -------------NACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PN 199 (450)
T ss_dssp -------------THHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GG
T ss_pred -------------hHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hH
Confidence 223334444444442 3444444556666777899999999888776555555555554432 22
Q ss_pred HHHHHHHHhHHcCCCCCChhhHHHHHHHHHc--cccHHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHHHH
Q 006457 272 EALDVFDQMVKSTDVKCNAVTLSAVLLAIAH--LGVLRLGKCIHDQVIKMDLEESVIVG---TSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 272 ~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~ 346 (644)
.+....... .++......+..+..+ ..+.+.+..++............... ..+.......+..+.+..
T Consensus 200 ~~~~~~~~~------~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 273 (450)
T d1qsaa1 200 TVLTFARTT------GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (450)
T ss_dssp GHHHHHHHS------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred hHHHHHhcC------CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 332222111 2233333333333333 24567777777776554322221111 112222233455666666
Q ss_pred HHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 347 AFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 347 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
.+..... .+.....-.+......+++..+...+..|... ..-...-.--+..+....|+.+.|..+|..+.. .
T Consensus 274 ~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~ 348 (450)
T d1qsaa1 274 WRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q 348 (450)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----C
Confidence 6654432 23322223344455667888888888877432 111233334566788888999999999888733 2
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCH-HH---HHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLI-EGMKVKADF-VV---WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~-~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
++ -|.-|... +.|..- .+- ...+..++. .. -..-+..+...|....|...+..+.+.. ++.-...+
T Consensus 349 ~~--fYG~LAa~--~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~l 419 (450)
T d1qsaa1 349 RG--FYPMVAAQ--RIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQL 419 (450)
T ss_dssp CS--HHHHHHHH--HTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHH
T ss_pred CC--hHHHHHHH--HcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHH
Confidence 33 44443321 122100 000 001111111 11 1122455667899999998888776543 34566778
Q ss_pred HHHHhhcCCchHHHHHHHHHh
Q 006457 500 SNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+.+..+.|.++.|+.......
T Consensus 420 a~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 420 ARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 888889999999987776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.13 E-value=3.4 Score=29.16 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=47.6
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (644)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|..+++-+.... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 445667777777777888999999999999999999999999998877543 234556665553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.66 E-value=2.6 Score=29.74 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+.-++.+-+..+....+.|++....+.|.||.+.+++..|.++|+.+..+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3445666666666677889999999999999999999999999998865433 44566766554
|