Citrus Sinensis ID: 006464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640----
MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAMRY
cccccEEEEEcccccccccHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccc
cccccEEEEEcccccccccHHHHHHHccccEEEEEEEccHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHEcccccccEEcHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHccccccccHHHHHHHcccccHHHHHHcccHccccccccccHHHccHHHHHHccccEcccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEEEccccccccccccc
MGGNRTIVWFRrdlriednpalaaaardgsvfpvytwcpkeegqfypgrvsRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVvfnhlydpvslvrdHSIKEKLVELGISVqsyngdllyepweiyderghafttFDAYWDKCLQmqmepasilppwrlvqaagtidgcsiedlgledesekssnallgrgwspgwsnADKVLTEFVEQHLLRYYKNrqklggnstsllspylhfgelsVRKVFQCLWMKQILWAKeenfegkeSVTFFLRAMGLREYSRYLcfnfpftherpllsnlkyfpwhadlgnfkawrqgrtgyplvdAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDIlgwqyisgslpdghelerldspeiqgskfdpegeyvRQWLpelarmptewihhpwdappnvLKAAGVelglnypkpiidldlGRERLTQAIFKMWEMEaadnamdsngtnevvfdnsdriqtpaipqvvlrekstcptissndqkvpsfqngknnlpsrkrpknveeerqypdelysckneagnsgahddfcstaessaakrqtttnisfsvphsfslsegkalqeyrssdvnrpwqeqidreqnssndgamry
mggnrtivwfrrdLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWakeenfegkESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSpeiqgskfdpegEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNypkpiidldlgRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCptissndqkvpsfqngknnlpsrkrpknveeerqYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSEGKALQEYRssdvnrpwqeqidreqnssndgamry
MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAMRY
*****TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLG***********LLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSL**********************GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAA************VF********************************************************************************************************************************************
**GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME****LP****VQAA**IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI************SVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF**************************RIQTPAIPQVV*****************************************************************************************************************************
MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSEGKALQEYRSSDVNRPWQEQI**************
**GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN****************************************************************************************************************************VNRPWQEQIDR************
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MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAMRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query644 2.2.26 [Sep-21-2011]
Q96524612 Cryptochrome-2 OS=Arabido yes no 0.861 0.906 0.669 0.0
P40115501 Cryptochrome-1 OS=Sinapis N/A no 0.760 0.978 0.707 0.0
Q43125681 Cryptochrome-1 OS=Arabido no no 0.864 0.817 0.558 0.0
Q55081488 Deoxyribodipyrimidine pho N/A no 0.687 0.907 0.323 2e-56
P00914472 Deoxyribodipyrimidine pho N/A no 0.689 0.940 0.311 1e-50
P25078473 Deoxyribodipyrimidine pho yes no 0.689 0.938 0.317 4e-50
O48652556 (6-4)DNA photolyase OS=Ar no no 0.748 0.866 0.299 3e-49
Q04449479 Deoxyribodipyrimidine pho yes no 0.708 0.951 0.284 3e-49
P57386483 Deoxyribodipyrimidine pho yes no 0.695 0.927 0.280 2e-48
Q9KNA8469 Deoxyribodipyrimidine pho yes no 0.670 0.921 0.302 2e-48
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2 Back     alignment and function desciption
 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)

Query: 4   NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
            +TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L 
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 64  QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
           QSLK+LG++L L KT +T++A+L+CI    ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65  QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124

Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
           SVQSYNGDLLYEPWEIY E+G  FT+F++YW KCL M +E   + PPWRL+    AA  I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184

Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
             CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244

Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
           SLLSPYLHFGE+SVR VFQC  MKQI+WA+++N EG+ES   FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304

Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
           PFTHE+ LLS+L++FPW AD+  FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364

Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
           FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424

Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
           PEGEY+RQWLPELAR+PTEWIHHPWDAP  VLKA+GVELG NY KPI+D+D  RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484

Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
           I +  E +     M     +E+V D+ +     A+    ++E   CP++SSNDQ+VPS  
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535

Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
            +   K   P  +  +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
Mediates blue light-induced gene expression. Involved in blue light-dependent stomatal opening and inhibition of stem and root growth. Regulates the timing of flowering by promoting the expression of 'FLOWERING LOCUS T' (FT) in vascular bundles. Negatively regulated by 'FLOWERING LOCUS C' (FLC). Involved in triggering chromatin decondensation.
Arabidopsis thaliana (taxid: 3702)
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1 Back     alignment and function description
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2 Back     alignment and function description
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=phrA PE=1 SV=1 Back     alignment and function description
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12) GN=phrB PE=1 SV=1 Back     alignment and function description
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2 Back     alignment and function description
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2 Back     alignment and function description
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain OF4) GN=phr PE=3 SV=2 Back     alignment and function description
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1 Back     alignment and function description
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query644
224112573646 predicted protein [Populus trichocarpa] 0.992 0.989 0.782 0.0
255581443640 DNA photolyase, putative [Ricinus commun 0.989 0.995 0.755 0.0
359477655646 PREDICTED: cryptochrome-2-like [Vitis vi 0.992 0.989 0.732 0.0
356576533634 PREDICTED: cryptochrome-2-like [Glycine 0.981 0.996 0.720 0.0
401782500646 cryptochrome 2 [Fragaria x ananassa] 0.993 0.990 0.724 0.0
45935260629 cryptochrome 2A apoprotein [Pisum sativu 0.972 0.995 0.720 0.0
227344531645 blue light photoreceptor [Fragaria vesca 0.987 0.986 0.724 0.0
261876465634 cryptochrome2 [Glycine max] 0.981 0.996 0.717 0.0
261876461634 cryptochrome2 [Glycine max] 0.981 0.996 0.718 0.0
351734424634 cryptochrome 2 [Glycine max] gi|89199718 0.981 0.996 0.717 0.0
>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa] gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/640 (78%), Positives = 558/640 (87%), Gaps = 1/640 (0%)

Query: 1   MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
           M  ++TIVWFRRDLRIEDNPALAAAARDG VFPV+ WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1   MDRSKTIVWFRRDLRIEDNPALAAAARDGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 61  YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
           +LGQSLKSLGAELVL KT ST+AALL+CI  I AT+VVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61  HLGQSLKSLGAELVLIKTHSTVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
           LGISVQSYNGDLLYEPWEIYDERGHAFTTF+AYWD+CL MQMEP S LPPWRLV AAGT+
Sbjct: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAGTV 180

Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
             CS+E+LGLEDE+EKSSN+LLGRGWSPGWSNADK LTEF EQHL+ Y ++R K+G  ST
Sbjct: 181 MKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVG-TST 239

Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
           SLLSPYLHFGELSVRKVFQC+ +KQ+LWAKEEN  GKESVT FLR++GLREYSRYLCFNF
Sbjct: 240 SLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNF 299

Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
           PFTHER LL NLKYFPW+ +  +FKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIVSS
Sbjct: 300 PFTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSS 359

Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
           FAVKVLLLPWRWGMKYFWDTLLDADLE DILGWQYISGSLPD HELERLD+PEIQGSKFD
Sbjct: 360 FAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGSKFD 419

Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
           PEGEYVR+WLPELARMP EWIHHPWDA   VLKAAGVELG+NYPKPIID+DL RERL +A
Sbjct: 420 PEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERLMEA 479

Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
           IFKMWEMEAA  A ++NGTNEVV DN+D  +  AIP+VVL++K TCPT SSNDQ+VP+ Q
Sbjct: 480 IFKMWEMEAAARASNTNGTNEVVVDNTDDTENLAIPKVVLKDKVTCPTNSSNDQRVPTNQ 539

Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISF 600
           N KN    RKR K +EEER  PD+L++  N  G +   +D CSTAESS+AK+Q T++ SF
Sbjct: 540 NSKNIPAYRKRSKYMEEERPQPDKLHNDGNVVGTTRKDEDLCSTAESSSAKKQATSSCSF 599

Query: 601 SVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDG 640
           SVP   S SEGK LQE  SSD+ +P Q QI+ EQ+SS DG
Sbjct: 600 SVPQYCSSSEGKPLQESESSDLRQPLQAQIEMEQSSSKDG 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis] gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359477655|ref|XP_002285169.2| PREDICTED: cryptochrome-2-like [Vitis vinifera] gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max] Back     alignment and taxonomy information
>gi|401782500|dbj|BAM36553.1| cryptochrome 2 [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum] gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum] Back     alignment and taxonomy information
>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca] gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca] Back     alignment and taxonomy information
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max] Back     alignment and taxonomy information
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max] Back     alignment and taxonomy information
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max] gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query644
TAIR|locus:2018254612 CRY2 "cryptochrome 2" [Arabido 0.925 0.973 0.639 1e-217
TAIR|locus:2138728681 CRY1 "cryptochrome 1" [Arabido 0.911 0.861 0.534 5.5e-180
TIGR_CMR|CBU_1176472 CBU_1176 "deoxyribodipyrimidin 0.715 0.976 0.382 2.7e-84
TIGR_CMR|BA_3180476 BA_3180 "deoxyribodipyrimidine 0.728 0.985 0.368 6.4e-83
TIGR_CMR|SPO_1917481 SPO_1917 "deoxyribodipyrimidin 0.708 0.948 0.321 2.2e-57
UNIPROTKB|Q9KNA8469 phrA "Deoxyribodipyrimidine ph 0.711 0.976 0.300 8.3e-51
TIGR_CMR|VC_A0057469 VC_A0057 "deoxyribodipyrimidin 0.711 0.976 0.300 8.3e-51
UNIPROTKB|P00914472 phr "deoxyribodipyrimidine pho 0.681 0.930 0.312 2.2e-50
TAIR|locus:2093217556 UVR3 "UV REPAIR DEFECTIVE 3" [ 0.763 0.884 0.301 5.8e-50
UNIPROTKB|Q48MU1482 phrB "Deoxyribodipyrimidine ph 0.708 0.946 0.299 1.5e-49
TAIR|locus:2018254 CRY2 "cryptochrome 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2103 (745.4 bits), Expect = 1.0e-217, P = 1.0e-217
 Identities = 393/615 (63%), Positives = 482/615 (78%)

Query:     5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
             +TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L Q
Sbjct:     6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query:    65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
             SLK+LG++L L KT +T++A+L+CI    ATKVVFNHLYDPVSLVRDH++KEKLVE GIS
Sbjct:    66 SLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGIS 125

Query:   125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ---AAGTID 181
             VQSYNGDLLYEPWEIY E+G  FT+F++YW KCL M +E   + PPWRL+    AA  I 
Sbjct:   126 VQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAIW 185

Query:   182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
              CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTS
Sbjct:   186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245

Query:   242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
             LLSPYLHFGE+SVR VFQC  MKQI+WA+++N EG+ES   FLR +GLREYSRY+CFNFP
Sbjct:   246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305

Query:   302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
             FTHE+ LLS+L++FPW AD+  FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSF
Sbjct:   306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365

Query:   362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
             AVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+DP
Sbjct:   366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425

Query:   422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
             EGEY+RQWLPELAR+PTEWIHHPWDAP  VLKA+GVELG NY KPI+D+D  RE L +AI
Sbjct:   426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485

Query:   482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSF-- 539
              +  E +    A      +E+V D+ +     A+    ++E   CP++SSNDQ+VPS   
Sbjct:   486 SRTREAQIMIGA----APDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAVR 536

Query:   540 QNGKNNL-PSRKRPKNVEEERQYPD-ELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTN 597
              NG   + P  +  +++++ R + + EL+S    + +S     F S + S A++ +    
Sbjct:   537 YNGSKRVKPEEEEERDMKKSRGFDERELFSTAESSSSSSVF--FVSQSCSLASEGKNLEG 594

Query:   598 ISFSVPHSFSLSEGK 612
             I  S     + S GK
Sbjct:   595 IQDS-SDQITTSLGK 608
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006281 "DNA repair" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009882 "blue light photoreceptor activity" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0042802 "identical protein binding" evidence=IPI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IGI
GO:0010118 "stomatal movement" evidence=IGI
GO:0009909 "regulation of flower development" evidence=IDA
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0006338 "chromatin remodeling" evidence=IMP
GO:0010617 "circadian regulation of calcium ion oscillation" evidence=IMP
GO:0010075 "regulation of meristem growth" evidence=IGI
GO:0006325 "chromatin organization" evidence=IMP
GO:0009416 "response to light stimulus" evidence=IEP
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0009637 "response to blue light" evidence=IMP
GO:0009638 "phototropism" evidence=IGI
TAIR|locus:2138728 CRY1 "cryptochrome 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1176 CBU_1176 "deoxyribodipyrimidine photolyase - class I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3180 BA_3180 "deoxyribodipyrimidine photolyase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1917 SPO_1917 "deoxyribodipyrimidine photolyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNA8 phrA "Deoxyribodipyrimidine photo-lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0057 VC_A0057 "deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P00914 phr "deoxyribodipyrimidine photolyase (photoreactivation)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2093217 UVR3 "UV REPAIR DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MU1 phrB "Deoxyribodipyrimidine photolyase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40115CRY1_SINALNo assigned EC number0.70730.76080.9780N/Ano
Q96524CRY2_ARATHNo assigned EC number0.66900.86180.9068yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 0.0
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 1e-117
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 1e-110
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 3e-76
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 5e-69
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 2e-46
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 4e-44
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information 
 Score =  843 bits (2179), Expect = 0.0
 Identities = 331/476 (69%), Positives = 389/476 (81%), Gaps = 3/476 (0%)

Query: 7   IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
           IVWFRRDLR+EDNPALAAAAR G V PV+ W P+EEGQ+YPGRVSRWWLKQSL++L QSL
Sbjct: 1   IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSL 60

Query: 67  KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
           +SLG  LV  ++  T+AALL+C+ +  AT++ FNHLYDPVSLVRDH  KE L   GISVQ
Sbjct: 61  RSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQ 120

Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
           S+N DLLYEPWE+YDE G  FT F A+W++CL M  +P S +LPP +++  +G +  CS 
Sbjct: 121 SFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCSA 178

Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
           +DLG ED+SEK SNALL R WSPGWSNADK LTEF+   LL Y KNR+K    +TSLLSP
Sbjct: 179 DDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSP 238

Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
           YLHFGE+SVRKVF  + MKQI WA E N  G+ESV  FLR++GLREYSRY+ FN PF+HE
Sbjct: 239 YLHFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHE 298

Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
           +PLL +LK+FPW  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 299 KPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358

Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
           L LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFDP GEY
Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPNGEY 418

Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
           VR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD  R RL +A+
Sbjct: 419 VRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEAL 474

At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light. Length = 475
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 644
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 100.0
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 98.1
PF12546121 Cryptochrome_C: Blue/Ultraviolet sensing protein C 92.52
COG2102223 Predicted ATPases of PP-loop superfamily [General 85.7
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 83.93
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information 
Probab=100.00  E-value=4.1e-123  Score=1034.60  Aligned_cols=473  Identities=70%  Similarity=1.272  Sum_probs=410.0

Q ss_pred             EEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHHH
Q 006464            7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALL   86 (644)
Q Consensus         7 LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~L~   86 (644)
                      ||||||||||+||+||.+|++.++|+||||+||..++....+.++++||++||.+|+++|+++|++|+|++++++.++|.
T Consensus         1 l~WFRrDLRl~DN~aL~~A~~~~~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~   80 (475)
T TIGR02766         1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL   80 (475)
T ss_pred             CEecCCCCCcchHHHHHHHHhCCCEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence            69999999999999999998877999999999987655455667778999999999999999999999987567899999


Q ss_pred             HHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCCCC-
Q 006464           87 ECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-  165 (644)
Q Consensus        87 ~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~p~-  165 (644)
                      +++++++|++|++|++|+++++.||++|+++|++.||.++.+++++|++|+++....|++|++|++|+++++..+..+. 
T Consensus        81 ~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~i~~~~~~~~~~ft~f~~~~~~~~~~~~~  160 (475)
T TIGR02766        81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPES  160 (475)
T ss_pred             HHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEEEEecCCEEEChhhhcccCCCCCCeecHHHHHHHhccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999988888999999999999887643321 


Q ss_pred             CCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCch
Q 006464          166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP  245 (644)
Q Consensus       166 ~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSP  245 (644)
                      +..+|..+ +.. ....++++.+++...............|+|||++|+++|++|+++++..|.++||.|+.++||+|||
T Consensus       161 ~~~~p~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~Y~~~Rd~p~~~~tS~LSP  238 (475)
T TIGR02766       161 PLLPPKKI-ISG-DVSKCSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSP  238 (475)
T ss_pred             CCCCcccc-CCC-ccccCChhhcCCCCcccccccccccccCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Confidence            12222211 110 1111222333443211101111112348999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHH
Q 006464          246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFK  325 (644)
Q Consensus       246 yL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~  325 (644)
                      ||+|||||||+||+++..+......++.....+|++.|++||+|||||+++++++|+....++...++.++|..|++.|+
T Consensus       239 yL~~G~ISpR~v~~~~~~~~~~~~~~~~~~~~~s~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~f~  318 (475)
T TIGR02766       239 YLHFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFK  318 (475)
T ss_pred             ccccCcccHHHHHHHHHhhhhhhhhcccCCCcccHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhcCCCCCCHHHHH
Confidence            99999999999999986422111112223345678899999999999999999999876667776777899999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCC
Q 006464          326 AWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE  405 (644)
Q Consensus       326 aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~  405 (644)
                      +|++|+||||+||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+|+|+|||||+||+|+|+.|
T Consensus       319 aW~~G~TG~P~VDA~MRqL~~TGwmhnR~Rm~vAsfl~k~L~idWr~G~~~F~~~LiD~D~a~N~g~Wqw~Ag~g~d~~~  398 (475)
T TIGR02766       319 AWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE  398 (475)
T ss_pred             HHHcCCCCCcchhHHHHHHHHHCCCcHHHHHHHHHHHHcccCCChHHHHHHHHHHccccchhcccccccccccCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHH
Q 006464          406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI  481 (644)
Q Consensus       406 ~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~  481 (644)
                      |||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+++||.+|.+||.|||||+.+|+++++++
T Consensus       399 ~~RifnP~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~~~~~~  474 (475)
T TIGR02766       399 LDRIDNPQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEAL  474 (475)
T ss_pred             ccccCCHHHHHhhcCCCcccHHHhChhhccCCHHHhcCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876

At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>PF12546 Cryptochrome_C: Blue/Ultraviolet sensing protein C terminal; InterPro: IPR020978 Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants [] Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 0.0
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 6e-52
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 2e-50
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 2e-49
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 3e-49
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 1e-43
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 9e-41
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 1e-38
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 2e-35
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 2e-35
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 6e-35
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 7e-33
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 8e-33
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 9e-33
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 1e-30
2xry_A482 X-Ray Structure Of Archaeal Class Ii Cpd Photolyase 8e-06
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure 
Iteration: 1

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/496 (61%), Positives = 385/496 (77%), Gaps = 3/496 (0%)
Query: 7   IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
           IVWFRRDLR+EDNPALAAA R G V  ++ W P+EEG ++PGRVSRWWLK SL+ L  SL
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67  KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
           +SLG  L+  ++  ++A+LL+ + +  A+++ FNHLYDP+SLVRDH  K+ L   GI+V+
Sbjct: 75  RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
           S+N DLLYEPWE+ DE G  F+ F A+W++CL M  +P S +LPP +++  +G +  C  
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
           + L  ED+SEK SNALL R WSPGWSN DK LT F+   LL Y KNR+K    +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
           +LHFGE+SVRKVF  + +KQ+ WA E N  G+ESV  FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
           RPLL +LK+FPW  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
           L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD  E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
           VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD  + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNE 501
           ++EAA  A   NG+ E
Sbjct: 493 QLEAASRAAIENGSEE 508
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From Methanosarcina Mazei Length = 482 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 0.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 0.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 0.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 0.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 0.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 1e-151
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 1e-147
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-146
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 1e-138
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 1e-132
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 1e-116
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 7e-94
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 5e-05
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
 Score =  705 bits (1822), Expect = 0.0
 Identities = 303/501 (60%), Positives = 384/501 (76%), Gaps = 1/501 (0%)

Query: 1   MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
             G  +IVWFRRDLR+EDNPALAAA R G V  ++ W P+EEG ++PGRVSRWWLK SL+
Sbjct: 9   GSGGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLA 68

Query: 61  YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
            L  SL+SLG  L+  ++  ++A+LL+ + +  A+++ FNHLYDP+SLVRDH  K+ L  
Sbjct: 69  QLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128

Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
            GI+V+S+N DLLYEPWE+ DE G  F+ F A+W++CL M  +P S L P + +  +G +
Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKI-ISGDV 187

Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
             C  + L  ED+SEK SNALL R WSPGWSN DK LT F+   LL Y KNR+K    +T
Sbjct: 188 SKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATT 247

Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
           S LSP+LHFGE+SVRKVF  + +KQ+ WA E N  G+ESV  FL+++GLREYSRY+ FN 
Sbjct: 248 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 307

Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
           P++HERPLL +LK+FPW  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 308 PYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367

Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
           F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD  E +R+D+P+ +G KFD
Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427

Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
           P GEYVR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD  + RL +A
Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEA 487

Query: 481 IFKMWEMEAADNAMDSNGTNE 501
           + +MW++EAA  A   NG+ E
Sbjct: 488 LSQMWQLEAASRAAIENGSEE 508
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query644
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-126  Score=1065.65  Aligned_cols=497  Identities=61%  Similarity=1.164  Sum_probs=427.3

Q ss_pred             CcEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHH
Q 006464            4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA   83 (644)
Q Consensus         4 ~~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~   83 (644)
                      .++|||||||||++||+||.+|++.++|+||||+||..++.+.+++.+++||++||++|+++|+++|++|+|++++++.+
T Consensus        12 ~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~   91 (509)
T 1u3d_A           12 GCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVA   91 (509)
T ss_dssp             -CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHH
T ss_pred             CcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence            36899999999999999999998877999999999987765566777788999999999999999999999998657788


Q ss_pred             HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCC
Q 006464           84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME  163 (644)
Q Consensus        84 ~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~  163 (644)
                      +|.++++++++++|+++++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++||++++..+..
T Consensus        92 ~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~~  171 (509)
T 1u3d_A           92 SLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYD  171 (509)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999888899999999999999876433


Q ss_pred             CC-CCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCC
Q 006464          164 PA-SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL  242 (644)
Q Consensus       164 p~-~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~  242 (644)
                      +. +.++|..+.+  ..+..++++.+++.+.............|+|||++|+++|++||++++..|..+||.|+.++||+
T Consensus       172 ~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~  249 (509)
T 1u3d_A          172 PESPLLPPKKIIS--GDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF  249 (509)
T ss_dssp             CCCCCCCCSCCCB--TTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCC
T ss_pred             CCCCCCCccccCc--cccCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence            32 1222221111  11112345566654321111111111248999999999999999999999999999999999999


Q ss_pred             CchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChh
Q 006464          243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLG  322 (644)
Q Consensus       243 LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~  322 (644)
                      |||||||||||||+|++++.+++..+..++...+.++++.|++||+||||++++++++|.+...++.++++.+||..|++
T Consensus       250 LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~  329 (509)
T 1u3d_A          250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDEN  329 (509)
T ss_dssp             CHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHH
T ss_pred             CChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChH
Confidence            99999999999999999987643211112222234678899999999999999999999988888888889999999999


Q ss_pred             hHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCC
Q 006464          323 NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD  402 (644)
Q Consensus       323 ~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d  402 (644)
                      .|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+|
T Consensus       330 ~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d  409 (509)
T 1u3d_A          330 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPD  409 (509)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHH
Q 006464          403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF  482 (644)
Q Consensus       403 ~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~  482 (644)
                      ++||||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+++||.+|.+||.|||||+++|++|+++|+
T Consensus       410 ~~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~  489 (509)
T 1u3d_A          410 SREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS  489 (509)
T ss_dssp             CCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCccccccCHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhHHhhhhhcCCCCccc
Q 006464          483 KMWEMEAADNAMDSNGTNEV  502 (644)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~  502 (644)
                      ++++..++.+++..+|.+|+
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~  509 (509)
T 1u3d_A          490 QMWQLEAASRAAIENGSEEG  509 (509)
T ss_dssp             HHHHHHCC------------
T ss_pred             HHHhhHHHHHHHhhcCccCC
Confidence            99999999999999998874
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 644
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 1e-75
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 2e-55
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 2e-51
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 2e-46
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 4e-39
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 2e-31
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 4e-23
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 9e-21
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 7e-20
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 3e-18
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  242 bits (617), Expect = 1e-75
 Identities = 204/300 (68%), Positives = 247/300 (82%)

Query: 191 EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFG 250
           ED+SEK SNALL R WSPGWSN DK LT F+   LL Y KNR+K    +TS LSP+LHFG
Sbjct: 1   EDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFG 60

Query: 251 ELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLS 310
           E+SVRKVF  + +KQ+ WA E N  G+ESV  FL+++GLREYSRY+ FN P++HERPLL 
Sbjct: 61  EVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLG 120

Query: 311 NLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPW 370
           +LK+FPW  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPW
Sbjct: 121 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW 180

Query: 371 RWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWL 430
           RWGMKYFWDTLLDADLE D LGWQYI+G+LPD  E +R+D+P+ +G KFDP GEYVR+WL
Sbjct: 181 RWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWL 240

Query: 431 PELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAA 490
           PEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD  + RL +A+ +MW++EAA
Sbjct: 241 PELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAA 300
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query644
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 100.0
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 100.0
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 99.98
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.97
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5e-90  Score=721.41  Aligned_cols=296  Identities=68%  Similarity=1.284  Sum_probs=275.6

Q ss_pred             hhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhc
Q 006464          194 SEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEEN  273 (644)
Q Consensus       194 ~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~  273 (644)
                      .+..+++++...|.+||++|+++|++||++++..|.+.||.|+..+||+|||||+|||||||+|++.++.+......+..
T Consensus         4 ~~~~~~~~~~~~W~pGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~   83 (300)
T d1u3da1           4 SEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGN   83 (300)
T ss_dssp             HHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhhHHHHhCcCCccHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhcc
Confidence            44566766666799999999999999999999999999999998999999999999999999999999765443333333


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchH
Q 006464          274 FEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR  353 (644)
Q Consensus       274 ~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr  353 (644)
                      .....+++.|++||+||||++++++++|.....+..+..+.++|..|++.|++|++|+||+||||||||||++|||||||
T Consensus        84 ~~~~~~~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr  163 (300)
T d1u3da1          84 EAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDR  163 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCHHHHHHHHhhcccchHHHHHHHHHHhhchhHHH
Confidence            33456678899999999999999999998877777777788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccc
Q 006464          354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPEL  433 (644)
Q Consensus       354 ~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL  433 (644)
                      ||||||||||++|+||||.|++||+++|||||+++|++||||+||+|+|+.+|+|||||++|+++|||+|+|||||||||
T Consensus       164 ~Rm~vaSfl~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL  243 (300)
T d1u3da1         164 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL  243 (300)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHhhHH
Q 006464          434 ARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA  489 (644)
Q Consensus       434 ~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~  489 (644)
                      +++|.++||+||++|..+|+.+||.+|.+||.||||++++|++++++++++|+.++
T Consensus       244 ~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~~~  299 (300)
T d1u3da1         244 SRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEA  299 (300)
T ss_dssp             TTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCHHHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999875
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure