Citrus Sinensis ID: 006517

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--

MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNRHK

ccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccEEEEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccEEEcccccEEEEcccccHHHHHHHHHccccccEEEEEcccccccccccccEEHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccHHHHHcccccccccccccccEEcccccHHHHHHHHHHccccEEEEEEcccccccEEEEEEccccHHHHHHccccccccccc

cHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHccccccHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccHHHEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHcccccccHHHHHccccccccccccccccccccccccHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccEEEHHHHccccEEEEEccEEHHHHHHHHHcccccccEEEccccccccHEEHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccHHHccccEcccccccccccEEcccccHHHHHHHHHHHcccEEEEEccccccccEEEEEEHHHHHHHHHHHHHHHHHcccc

MGFVANTSINLGLAILAAILCAYIapaaagsgipeVKAYLngidahsilapsTLFVKIFGSIFGVAAgfvvgkegpmvhtGACIANllgqggskkyhLTWRWLRYFkndrdrrdlitcgaaagvagafrapvGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCrsgrcglfgqgglimfdvnsaknsyssaDLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCcsyglpwlshcipcpsyleadrcptvgrsgnyknfqcpaghyndlASLFLNTNDDAIRNLfssgtskefhLSTLLVFFVAIYCLGIITYgiavpsglFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKlkglpyleahaepyMKNLVasdvvsgplitfsgvekVGNIMHALRLtrhngfpvideppltpapelcgLVLRSHLLVLLkgkkftkqktmtgsdIMRRFKAhdfakagsgkgvkledldiKEEEMEMFvdlhpitntspytVVETMSLAKAAVLFRQLALRHLcvvpktpgrppivgiltrhdfmpehvlglyphivnrhk

MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLgqggskkyhLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVllkgkkftkqktmtgsdiMRRFKahdfakagsgkgvklEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHlcvvpktpgrPPIVGILTRHDFMPEHVLglyphivnrhk

MGFVANTSinlglailaailcayiapaaaGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCgaaagvagafrapvggvLFALEEAASWWRSALLWRtffttavvavvLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADllaviflgviggifgSFYNYLVDKVLRTYSIINERGPIFKvllvaavsllTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTglfallgaasflggTMRMTVSlcvilleltnnllmlplvmlvlliSKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPElcglvlrshllvllKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNRHK

**FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK*****GVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIV****

MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDF**********LEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV************

MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFT*****TGSDIMR*F*AHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVN***

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		642	2.2.26 [Sep-21-2011]
Q96282		779	Chloride channel protein	yes	no	0.992	0.817	0.819	0.0
P60300		765	Putative chloride channel	no	no	0.995	0.835	0.642	0.0
P92942		780	Chloride channel protein	no	no	0.965	0.794	0.579	0.0
P92941		775	Chloride channel protein	no	no	0.987	0.818	0.564	0.0
P92943		792	Chloride channel protein	no	no	0.965	0.782	0.503	1e-150
O70496		803	H(+)/Cl(-) exchange trans	yes	no	0.933	0.745	0.370	8e-95
P51799		803	H(+)/Cl(-) exchange trans	yes	no	0.933	0.745	0.370	8e-95
P51798		805	H(+)/Cl(-) exchange trans	yes	no	0.931	0.742	0.369	8e-90
Q4PKH3		809	H(+)/Cl(-) exchange trans	yes	no	0.920	0.730	0.368	3e-87
Q86AZ6		815	Chloride channel protein	yes	no	0.951	0.749	0.321	6e-85

>sp\|Q96282\|CLCC_ARATH Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1	Back alignment and function desciption

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/637 (81%), Positives = 571/637 (89%)

Query: 1   MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFG 60
             F A    NL LA  AA LCA+IAPAAAGSGIPEVKAYLNGIDA+SILAPSTLFVKIFG
Sbjct: 139 QAFFAFAGCNLILATAAASLCAFIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFG 198

Query: 61  SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA 120
           SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKY LTW+WLR+FKNDRDRRDLITCGA
Sbjct: 199 SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRDRRDLITCGA 258

Query: 121 AAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLF 180
           AAGVA AFRAPVGGVLFALEEAASWWR+ALLWRTFFTTAVVAVVLR  IEFCRSGRCGLF
Sbjct: 259 AAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEFCRSGRCGLF 318

Query: 181 GQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 240
           G+GGLIMFDVNS    YS+ DLLA++FLGVIGG+ GS YNYLVDKVLRTYSIINE+GP F
Sbjct: 319 GKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLRTYSIINEKGPRF 378

Query: 241 KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLA 300
           K++LV AVS+L+SCC++GLPWLS C PCP  +E  +CP+VGRS  YK+FQCP  HYNDL+
Sbjct: 379 KIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQCPPNHYNDLS 438

Query: 301 SLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA 360
           SL LNTNDDAIRNLF+S +  EFH+STL +FFVA+YCLGIITYGIA+PSGLFIPVILAGA
Sbjct: 439 SLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYCLGIITYGIAIPSGLFIPVILAGA 498

Query: 361 SYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV 420
           SYGRLVG LLG +S LD GLF+LLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV
Sbjct: 499 SYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV 558

Query: 421 LLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGN 480
           LLISKTVAD FN+GVYDQIV +KGLPY+E HAEPYM+NLVA DVVSG LI+FS VEKVG 
Sbjct: 559 LLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGALISFSRVEKVGV 618

Query: 481 IMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRF 540
           I  AL++TRHNGFPVIDEPP T A ELCG+ LRSHLLVLL+GKKF+KQ+T  GS I+R  
Sbjct: 619 IWQALKMTRHNGFPVIDEPPFTEASELCGIALRSHLLVLLQGKKFSKQRTTFGSQILRSC 678

Query: 541 KAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLA 600
           KA DF KAG GKG+K+EDLD+ EEEMEM+VDLHPITNTSPYTV+ET+SLAKAA+LFRQL 
Sbjct: 679 KARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLG 738

Query: 601 LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 637
           LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI
Sbjct: 739 LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 775

Voltage-gated chloride channel.
Arabidopsis thaliana (taxid: 3702)

>sp\|P60300\|CLCG_ARATH Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2	Back alignment and function description

>sp\|P92942\|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1	Back alignment and function description

>sp\|P92941\|CLCA_ARATH Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2	Back alignment and function description

>sp\|P92943\|CLCD_ARATH Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2	Back alignment and function description

>sp\|O70496\|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1	Back alignment and function description

>sp\|P51799\|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1	Back alignment and function description

>sp\|P51798\|CLCN7_HUMAN H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2	Back alignment and function description

>sp\|Q4PKH3\|CLCN7_BOVIN H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1	Back alignment and function description

>sp\|Q86AZ6\|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
294715576		789	chloride channel protein [Citrus trifoli	1.0	0.813	0.992	0.0
224120030		743	Cl-channel clc-7 [Populus trichocarpa] g	0.951	0.822	0.852	0.0
224129480		743	Cl-channel clc-7 [Populus trichocarpa] g	0.951	0.822	0.857	0.0
297739465		742	unnamed protein product [Vitis vinifera]	0.989	0.855	0.817	0.0
15240576		779	chloride channel protein CLC-c [Arabidop	0.992	0.817	0.819	0.0
225465251		771	PREDICTED: chloride channel protein CLC-	0.979	0.815	0.809	0.0
297795753		778	CLC-C [Arabidopsis lyrata subsp. lyrata]	0.992	0.818	0.811	0.0
255573878		754	chloride channel clc, putative [Ricinus	0.957	0.815	0.847	0.0
289541481		775	chloride channel C [Eutrema halophilum]	0.990	0.820	0.813	0.0
1773014		764	chloride channel Stclc1 [Solanum tuberos	0.992	0.833	0.807	0.0

>gi\|294715576\|gb\|ADF30876.1\| chloride channel protein [Citrus trifoliata]	Back alignment and taxonomy information

 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/642 (99%), Positives = 639/642 (99%)

Query: 1   MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFG 60
           MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFG
Sbjct: 148 MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFG 207

Query: 61  SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA 120
           SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA
Sbjct: 208 SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA 267

Query: 121 AAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLF 180
           AAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLF
Sbjct: 268 AAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLF 327

Query: 181 GQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 240
           GQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF
Sbjct: 328 GQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 387

Query: 241 KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLA 300
           KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLA
Sbjct: 388 KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLA 447

Query: 301 SLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA 360
           SLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA
Sbjct: 448 SLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA 507

Query: 361 SYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV 420
           SYGRLVGNLLGALS LD GLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV
Sbjct: 508 SYGRLVGNLLGALSGLDAGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLV 567

Query: 421 LLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGN 480
           LLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGN
Sbjct: 568 LLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGN 627

Query: 481 IMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRF 540
           IMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM GSDIMRRF
Sbjct: 628 IMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMAGSDIMRRF 687

Query: 541 KAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLA 600
           KAHDFAKAGSGKGVKLEDLDI+EEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLA
Sbjct: 688 KAHDFAKAGSGKGVKLEDLDIEEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLA 747

Query: 601 LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNRHK 642
           LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPH+VNRHK
Sbjct: 748 LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHVVNRHK 789

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224120030\|ref\|XP_002331119.1\| Cl-channel clc-7 [Populus trichocarpa] gi\|222872847\|gb\|EEF09978.1\| Cl-channel clc-7 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224129480\|ref\|XP_002328727.1\| Cl-channel clc-7 [Populus trichocarpa] gi\|222839025\|gb\|EEE77376.1\| Cl-channel clc-7 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297739465\|emb\|CBI29647.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|15240576|ref|NP_199800.1| chloride channel protein CLC-c [Arabidopsis thaliana] gi|41688510|sp|Q96282.1|CLCC_ARATH RecName: Full=Chloride channel protein CLC-c; Short=AtCLC-c; AltName: Full=CBS domain-containing protein CBSCLC4 gi|1655536|emb|CAA70310.1| chloride channel [Arabidopsis thaliana] gi|1742957|emb|CAA96059.1| CLC-c chloride channel protein [Arabidopsis thaliana] gi|8777420|dbj|BAA97010.1| chloride channel [Arabidopsis thaliana] gi|21539519|gb|AAM53312.1| chloride channel [Arabidopsis thaliana] gi|24899767|gb|AAN65098.1| chloride channel [Arabidopsis thaliana] gi|332008485|gb|AED95868.1| chloride channel protein CLC-c [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|225465251\|ref\|XP_002268066.1\| PREDICTED: chloride channel protein CLC-c [Vitis vinifera] gi\|301318128\|gb\|ADK66979.1\| chloride channel ClC1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297795753\|ref\|XP_002865761.1\| CLC-C [Arabidopsis lyrata subsp. lyrata] gi\|297311596\|gb\|EFH42020.1\| CLC-C [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|255573878\|ref\|XP_002527858.1\| chloride channel clc, putative [Ricinus communis] gi\|223532782\|gb\|EEF34561.1\| chloride channel clc, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|289541481\|gb\|ADD09861.1\| chloride channel C [Eutrema halophilum]	Back alignment and taxonomy information

>gi\|1773014\|emb\|CAA71369.1\| chloride channel Stclc1 [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
TAIR\|locus:2158809		779	CLC-C "chloride channel C" [Ar	0.947	0.780	0.677	5.4e-221
TAIR\|locus:2095123		780	CLC-B "chloride channel B" [Ar	0.934	0.769	0.467	8.4e-145
TAIR\|locus:2164466		775	CLC-A "chloride channel A" [Ar	0.943	0.781	0.455	1.1e-144
TAIR\|locus:2179724		792	CLC-D "chloride channel D" [Ar	0.923	0.748	0.388	3.6e-105
ZFIN\|ZDB-GENE-061103-196		795	clcn7 "chloride channel 7" [Da	0.906	0.732	0.292	1.6e-61
UNIPROTKB\|E1BK15		870	CLCN6 "Uncharacterized protein	0.724	0.534	0.305	8.3e-61
UNIPROTKB\|E1BZI1		868	CLCN6 "Uncharacterized protein	0.722	0.534	0.302	2.3e-59
UNIPROTKB\|F1NS73		802	CLCN7 "Uncharacterized protein	0.908	0.726	0.282	3.2e-58
UNIPROTKB\|F1RG09		809	LOC100626534 "Uncharacterized	0.908	0.720	0.286	3.2e-58
ZFIN\|ZDB-GENE-030131-2056		863	clcn6 "chloride channel 6" [Da	0.718	0.534	0.288	4.3e-58

TAIR\|locus:2158809 CLC-C "chloride channel C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2134 (756.3 bits), Expect = 5.4e-221, P = 5.4e-221
 Identities = 412/608 (67%), Positives = 452/608 (74%)

Query:    30 GSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLG 89
             GSGIPEVKAYLNGIDA+SILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLG
Sbjct:   168 GSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLG 227

Query:    90 QGGSKKYHLTWRWLRYFKNDRDRRDLITCXXXXXXXXXXXXXXXXXLFALEEAASWWRSA 149
             QGGSKKY LTW+WLR+FKNDRDRRDLITC                 LFALEEAASWWR+A
Sbjct:   228 QGGSKKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNA 287

Query:   150 LLWRXXXXXXXXXXXLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADXXXXXXXX 209
             LLWR           LR  IEFCRSGRCGLFG+GGLIMFDVNS    YS+ D        
Sbjct:   288 LLWRTFFTTAVVAVVLRSLIEFCRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLG 347

Query:   210 XXXXXXXSFYNYLVDKVLRTYSIINERGPIFKXXXXXXXXXXTSCCSYGLPWLSHCIPCP 269
                    S YNYLVDKVLRTYSIINE+GP FK          +SCC++GLPWLS C PCP
Sbjct:   348 VIGGVLGSLYNYLVDKVLRTYSIINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCP 407

Query:   270 SYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLL 329
               +E  +CP+VGRS  YK+FQCP  HYNDL+SL LNTNDDAIRNLF+S +  EFH+STL 
Sbjct:   408 IGIEEGKCPSVGRSSIYKSFQCPPNHYNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLA 467

Query:   330 VFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTXXXXXXXXXXX 389
             +FFVA+YCLGIITYGIA+PSGLFIPVILAGASYGRLVG LLG +S LD            
Sbjct:   468 IFFVAVYCLGIITYGIAIPSGLFIPVILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASF 527

Query:   390 XXXTMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKTVADSFNQGVYDQIVKLKGLPYLE 449
                TMRMTVS                        SKTVAD FN+GVYDQIV +KGLPY+E
Sbjct:   528 LGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

Query:   450 AHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEXXX 509
              HAEPYM+NLVA DVVSG LI+FS VEKVG I  AL++TRHNGFPVIDEPP T A E   
Sbjct:   588 DHAEPYMRNLVAKDVVSGALISFSRVEKVGVIWQALKMTRHNGFPVIDEPPFTEASELCG 647

Query:   510 XXXXXXXXXXXKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMF 569
                        +GKKF+KQ+T  GS I+R  KA DF KAG GKG+K+EDLD+ EEEMEM+
Sbjct:   648 IALRSHLLVLLQGKKFSKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMY 707

Query:   570 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629
             VDLHPITNTSPYTV+ET+SLAKAA+LFRQL LRHLCVVPKTPGRPPIVGILTRHDFMPEH
Sbjct:   708 VDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVPKTPGRPPIVGILTRHDFMPEH 767

Query:   630 VLGLYPHI 637
             VLGLYPHI
Sbjct:   768 VLGLYPHI 775

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0006821 "chloride transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

TAIR\|locus:2095123 CLC-B "chloride channel B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164466 CLC-A "chloride channel A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2179724 CLC-D "chloride channel D" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BK15 CLCN6 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZI1 CLCN6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NS73 CLCN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2056 clcn6 "chloride channel 6" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96282	CLCC_ARATH	No assigned EC number	0.8194	0.9922	0.8177	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		642
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	1e-136
cd03684		445	cd03684, ClC_3_like, ClC-3-like chloride channel p	3e-88
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	5e-71
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	1e-68
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	3e-58
COG0038		443	COG0038, EriC, Chloride channel protein EriC [Inor	3e-46
cd00400		383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	2e-44
cd01031		402	cd01031, EriC, ClC chloride channel EriC	9e-44
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	3e-37
cd01034		390	cd01034, EriC_like, ClC chloride channel family	7e-32
PRK05277		438	PRK05277, PRK05277, chloride channel protein; Prov	7e-31
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	8e-30
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	8e-22
cd04591		105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	6e-21
cd01033		388	cd01033, ClC_like, Putative ClC chloride channel	3e-14
PRK01862		574	PRK01862, PRK01862, putative voltage-gated ClC-typ	4e-07
cd03682		378	cd03682, ClC_sycA_like, ClC sycA-like chloride cha	5e-06
PRK01610		418	PRK01610, PRK01610, putative voltage-gated ClC-typ	2e-05
cd02205		113	cd02205, CBS_pair, The CBS domain, named after hum	2e-05
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	1e-04
cd04611		111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.001
pfam00571		57	pfam00571, CBS, CBS domain	0.001
cd00400		383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	0.003

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

 Score =  405 bits (1044), Expect = e-136
 Identities = 143/266 (53%), Positives = 179/266 (67%)

Query: 1   MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFG 60
             F+    +NL L ++AA+L AYIAP AAGSGIPEVK YLNG+    IL   TL VKI G
Sbjct: 76  TAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVG 135

Query: 61  SIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGA 120
            I  V+ G  +GKEGPM+H GACIA  L QGGS    L +RW RYF+NDRD+RD +TCGA
Sbjct: 136 VILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGA 195

Query: 121 AAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLF 180
           AAGVA AF APVGGVLF+LEE AS+W  AL WRTFF++ +V   L  F+  C SG+CGLF
Sbjct: 196 AAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSGCNSGKCGLF 255

Query: 181 GQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 240
           G GGLIMFD +S K  Y+  +L+  + +GVIGG+ G+ +N+L  KV R    IN +G + 
Sbjct: 256 GPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLL 315

Query: 241 KVLLVAAVSLLTSCCSYGLPWLSHCI 266
           KVL    VSL+TS  ++    L   +
Sbjct: 316 KVLEALLVSLVTSVVAFPQTLLIFFV 341

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466

>gnl\|CDD\|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	Back alignment and domain information

>gnl\|CDD\|238504 cd01031, EriC, ClC chloride channel EriC	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238506 cd01034, EriC_like, ClC chloride channel family	Back alignment and domain information

>gnl\|CDD\|235385 PRK05277, PRK05277, chloride channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>gnl\|CDD\|238505 cd01033, ClC_like, Putative ClC chloride channel	Back alignment and domain information

>gnl\|CDD\|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

>gnl\|CDD\|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream	Back alignment and domain information

>gnl\|CDD\|201313 pfam00571, CBS, CBS domain	Back alignment and domain information

>gnl\|CDD\|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		642
KOG0474		762	consensus Cl- channel CLC-7 and related proteins (	100.0
KOG0475		696	consensus Cl- channel CLC-3 and related proteins (	100.0
PRK01862		574	putative voltage-gated ClC-type chloride channel C	100.0
KOG0476		931	consensus Cl- channel CLC-2 and related proteins (	100.0
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	100.0
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	100.0
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	100.0
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	100.0
PRK01610		418	putative voltage-gated ClC-type chloride channel C	100.0
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	100.0
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	100.0
cd01034		390	EriC_like ClC chloride channel family. These prote	100.0
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	100.0
PRK05277		438	chloride channel protein; Provisional	100.0
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	100.0
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	100.0
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	100.0
PRK03655		414	putative ion channel protein; Provisional	100.0
COG3448		382	CBS-domain-containing membrane protein [Signal tra	99.71
COG2524		294	Predicted transcriptional regulator, contains C-te	99.7
PRK11543		321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.64
PRK10892		326	D-arabinose 5-phosphate isomerase; Provisional	99.64
PRK01862		574	putative voltage-gated ClC-type chloride channel C	99.58
COG3620		187	Predicted transcriptional regulator with C-termina	99.57
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.54
COG4109		432	Predicted transcriptional regulator containing CBS	99.51
PRK07807		479	inosine 5-monophosphate dehydrogenase; Validated	99.51
cd04641		120	CBS_pair_28 The CBS domain, named after human CBS,	99.5
cd01034		390	EriC_like ClC chloride channel family. These prote	99.49
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	99.49
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	99.49
cd04619		114	CBS_pair_6 The CBS domain, named after human CBS,	99.49
PRK05277		438	chloride channel protein; Provisional	99.48
cd04603		111	CBS_pair_KefB_assoc This cd contains two tandem re	99.47
cd04618		98	CBS_pair_5 The CBS domain, named after human CBS,	99.45
TIGR03520		408	GldE gliding motility-associated protein GldE. Mem	99.45
cd04617		118	CBS_pair_4 The CBS domain, named after human CBS,	99.44
PRK15094		292	magnesium/cobalt efflux protein CorC; Provisional	99.43
cd04593		115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.43
cd04600		124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.42
cd04605		110	CBS_pair_MET2_assoc This cd contains two tandem re	99.41
PRK07107		502	inosine 5-monophosphate dehydrogenase; Validated	99.41
cd04639		111	CBS_pair_26 The CBS domain, named after human CBS,	99.4
cd04608		124	CBS_pair_PALP_assoc This cd contains two tandem re	99.4
cd04607		113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.39
cd04596		108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.39
cd04624		112	CBS_pair_11 The CBS domain, named after human CBS,	99.39
cd04614		96	CBS_pair_1 The CBS domain, named after human CBS,	99.38
TIGR01137		454	cysta_beta cystathionine beta-synthase. Members of	99.38
cd04583		109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.38
cd04623		113	CBS_pair_10 The CBS domain, named after human CBS,	99.37
cd04801		114	CBS_pair_M50_like This cd contains two tandem repe	99.37
cd04615		113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
cd04582		106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.37
cd04630		114	CBS_pair_17 The CBS domain, named after human CBS,	99.37
cd04803		122	CBS_pair_15 The CBS domain, named after human CBS,	99.37
cd04629		114	CBS_pair_16 The CBS domain, named after human CBS,	99.36
TIGR00400		449	mgtE Mg2+ transporter (mgtE). This family of proka	99.36
cd04613		114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.36
TIGR01303		475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.36
cd04620		115	CBS_pair_7 The CBS domain, named after human CBS,	99.35
cd04586		135	CBS_pair_BON_assoc This cd contains two tandem rep	99.35
cd04636		132	CBS_pair_23 The CBS domain, named after human CBS,	99.34
cd04642		126	CBS_pair_29 The CBS domain, named after human CBS,	99.34
cd04626		111	CBS_pair_13 The CBS domain, named after human CBS,	99.34
cd04588		110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.34
cd04627		123	CBS_pair_14 The CBS domain, named after human CBS,	99.33
cd04635		122	CBS_pair_22 The CBS domain, named after human CBS,	99.33
cd04604		114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.33
cd04595		110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.33
cd04631		125	CBS_pair_18 The CBS domain, named after human CBS,	99.33
cd04643		116	CBS_pair_30 The CBS domain, named after human CBS,	99.33
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.32
cd04621		135	CBS_pair_8 The CBS domain, named after human CBS,	99.32
cd04602		114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.32
cd04611		111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.31
cd04800		111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.31
cd04632		128	CBS_pair_19 The CBS domain, named after human CBS,	99.31
cd04591		105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.31
cd04601		110	CBS_pair_IMPDH This cd contains two tandem repeats	99.31
PRK14869		546	putative manganese-dependent inorganic pyrophospha	99.31
cd04622		113	CBS_pair_9 The CBS domain, named after human CBS,	99.3
cd04587		113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.3
cd04612		111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.3
cd04589		111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.3
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.29
PRK01610		418	putative voltage-gated ClC-type chloride channel C	99.29
PLN02274		505	inosine-5'-monophosphate dehydrogenase	99.29
cd04585		122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.29
cd04625		112	CBS_pair_12 The CBS domain, named after human CBS,	99.29
cd04599		105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.29
cd04640		126	CBS_pair_27 The CBS domain, named after human CBS,	99.29
cd04590		111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.28
TIGR00393		268	kpsF KpsF/GutQ family protein. This model describe	99.28
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	99.28
cd04802		112	CBS_pair_3 The CBS domain, named after human CBS,	99.28
cd04637		122	CBS_pair_24 The CBS domain, named after human CBS,	99.28
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.27
cd04610		107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.27
COG0517		117	FOG: CBS domain [General function prediction only]	99.27
cd04609		110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.25
cd04606		109	CBS_pair_Mg_transporter This cd contains two tande	99.25
cd04594		104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.25
cd02205		113	CBS_pair The CBS domain, named after human CBS, is	99.24
COG2905		610	Predicted signal-transduction protein containing c	99.24
PRK11573		413	hypothetical protein; Provisional	99.23
cd04633		121	CBS_pair_20 The CBS domain, named after human CBS,	99.22
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	99.22
cd04584		121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.2
cd04638		106	CBS_pair_25 The CBS domain, named after human CBS,	99.17
cd04598		119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.16
cd04634		143	CBS_pair_21 The CBS domain, named after human CBS,	99.15
COG1253		429	TlyC Hemolysins and related proteins containing CB	99.12
COG2239		451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.09
COG4536		423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.07
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	99.04
cd04592		133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.04
PRK03655		414	putative ion channel protein; Provisional	99.04
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	99.03
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	98.99
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	98.97
PF00571		57	CBS: CBS domain CBS domain web page. Mutations in	98.82
PF00571		57	CBS: CBS domain CBS domain web page. Mutations in	98.81
KOG2550		503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.77
COG4535		293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.73
KOG1764		381	consensus 5'-AMP-activated protein kinase, gamma s	98.6
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	98.57
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	98.53
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	98.47
COG3448		382	CBS-domain-containing membrane protein [Signal tra	98.25
TIGR00400		449	mgtE Mg2+ transporter (mgtE). This family of proka	98.21
cd04597		113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.19
PRK14869		546	putative manganese-dependent inorganic pyrophospha	98.18
COG2524		294	Predicted transcriptional regulator, contains C-te	97.99
cd04603		111	CBS_pair_KefB_assoc This cd contains two tandem re	97.94
cd04597		113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.91
COG3620		187	Predicted transcriptional regulator with C-termina	97.89
cd04619		114	CBS_pair_6 The CBS domain, named after human CBS,	97.82
cd04600		124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.62
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.58
cd04607		113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.57
cd04620		115	CBS_pair_7 The CBS domain, named after human CBS,	97.56
cd04625		112	CBS_pair_12 The CBS domain, named after human CBS,	97.55
cd04627		123	CBS_pair_14 The CBS domain, named after human CBS,	97.55
cd04606		109	CBS_pair_Mg_transporter This cd contains two tande	97.53
cd04585		122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.53
cd04596		108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.52
cd04617		118	CBS_pair_4 The CBS domain, named after human CBS,	97.51
cd04615		113	CBS_pair_2 The CBS domain, named after human CBS,	97.51
cd04630		114	CBS_pair_17 The CBS domain, named after human CBS,	97.5
cd04618		98	CBS_pair_5 The CBS domain, named after human CBS,	97.48
cd04641		120	CBS_pair_28 The CBS domain, named after human CBS,	97.47
cd04610		107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.45
cd04635		122	CBS_pair_22 The CBS domain, named after human CBS,	97.44
cd04621		135	CBS_pair_8 The CBS domain, named after human CBS,	97.44
cd04604		114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.44
cd04587		113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.43
cd04639		111	CBS_pair_26 The CBS domain, named after human CBS,	97.42
cd04803		122	CBS_pair_15 The CBS domain, named after human CBS,	97.42
COG4109		432	Predicted transcriptional regulator containing CBS	97.42
cd04602		114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.41
smart00116		49	CBS Domain in cystathionine beta-synthase and othe	97.41
cd04611		111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.41
PRK10892		326	D-arabinose 5-phosphate isomerase; Provisional	97.4
cd04614		96	CBS_pair_1 The CBS domain, named after human CBS,	97.4
cd04592		133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.39
cd04583		109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.39
TIGR01303		475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.38
cd04802		112	CBS_pair_3 The CBS domain, named after human CBS,	97.38
smart00116		49	CBS Domain in cystathionine beta-synthase and othe	97.38
cd04613		114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.37
cd04582		106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.36
cd04595		110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.36
cd04586		135	CBS_pair_BON_assoc This cd contains two tandem rep	97.35
cd04622		113	CBS_pair_9 The CBS domain, named after human CBS,	97.35
PRK07107		502	inosine 5-monophosphate dehydrogenase; Validated	97.35
KOG1764		381	consensus 5'-AMP-activated protein kinase, gamma s	97.34
cd04631		125	CBS_pair_18 The CBS domain, named after human CBS,	97.34
cd04623		113	CBS_pair_10 The CBS domain, named after human CBS,	97.33
cd04601		110	CBS_pair_IMPDH This cd contains two tandem repeats	97.32
cd04589		111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.31
cd04629		114	CBS_pair_16 The CBS domain, named after human CBS,	97.31
cd04593		115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.31
PRK11543		321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.3
cd04633		121	CBS_pair_20 The CBS domain, named after human CBS,	97.3
cd04608		124	CBS_pair_PALP_assoc This cd contains two tandem re	97.3
cd04643		116	CBS_pair_30 The CBS domain, named after human CBS,	97.29
PRK07807		479	inosine 5-monophosphate dehydrogenase; Validated	97.29
cd04588		110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.28
cd04612		111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.28
cd04800		111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.28
cd04636		132	CBS_pair_23 The CBS domain, named after human CBS,	97.27
cd04801		114	CBS_pair_M50_like This cd contains two tandem repe	97.26
cd04605		110	CBS_pair_MET2_assoc This cd contains two tandem re	97.25
cd04594		104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.25
cd04599		105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.24
PLN02274		505	inosine-5'-monophosphate dehydrogenase	97.23
cd04626		111	CBS_pair_13 The CBS domain, named after human CBS,	97.22
COG0517		117	FOG: CBS domain [General function prediction only]	97.22
cd04642		126	CBS_pair_29 The CBS domain, named after human CBS,	97.22
cd04624		112	CBS_pair_11 The CBS domain, named after human CBS,	97.18
cd04637		122	CBS_pair_24 The CBS domain, named after human CBS,	97.17
cd04591		105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.16
cd04584		121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.14
cd04632		128	CBS_pair_19 The CBS domain, named after human CBS,	97.05
TIGR01137		454	cysta_beta cystathionine beta-synthase. Members of	96.95
cd04598		119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.92
TIGR00393		268	kpsF KpsF/GutQ family protein. This model describe	96.91
cd02205		113	CBS_pair The CBS domain, named after human CBS, is	96.86
cd04590		111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.86
PTZ00314		495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.85
KOG0474		762	consensus Cl- channel CLC-7 and related proteins (	96.83
cd04640		126	CBS_pair_27 The CBS domain, named after human CBS,	96.81
cd04609		110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.77
cd04638		106	CBS_pair_25 The CBS domain, named after human CBS,	96.77
cd04634		143	CBS_pair_21 The CBS domain, named after human CBS,	96.74
COG2905		610	Predicted signal-transduction protein containing c	96.72
TIGR01302		450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.69
COG2239		451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.64
PRK15094		292	magnesium/cobalt efflux protein CorC; Provisional	96.58
TIGR03520		408	GldE gliding motility-associated protein GldE. Mem	96.51
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.5
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	96.42
TIGR01186		363	proV glycine betaine/L-proline transport ATP bindi	96.0
PRK10070		400	glycine betaine transporter ATP-binding subunit; P	94.96
KOG2550		503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.87
KOG0476		931	consensus Cl- channel CLC-2 and related proteins (	94.66
PRK11573		413	hypothetical protein; Provisional	93.87
KOG0475		696	consensus Cl- channel CLC-3 and related proteins (	92.69
COG1253		429	TlyC Hemolysins and related proteins containing CB	92.53
KOG2118		498	consensus Predicted membrane protein, contains two	91.43
COG4535		293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	88.78
TIGR03415		382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.74
COG4175		386	ProV ABC-type proline/glycine betaine transport sy	82.82
TIGR02865		764	spore_II_E stage II sporulation protein E. Stage I	80.15

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.3e-116  Score=910.67  Aligned_cols=621  Identities=60%  Similarity=1.005  Sum_probs=574.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517            2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG   81 (642)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig   81 (642)
                      +|+.|+.+.+.++++++.++.+++|.|+||||||||+|+||++.|+.+++||++.|+++++.++++|+.+|||||+||.|
T Consensus       137 ~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsG  216 (762)
T KOG0474|consen  137 SLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSG  216 (762)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006517           82 ACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVV  161 (642)
Q Consensus        82 a~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va  161 (642)
                      +++|+.++|+.|..+++.|+|+|+|+|++|||++++||+|||+||+|+||+||++|++||.+++|+..++||.||++.++
T Consensus       217 a~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~  296 (762)
T KOG0474|consen  217 SVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIV  296 (762)
T ss_pred             HHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchh
Q 006517          162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFK  241 (642)
Q Consensus       162 ~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~  241 (642)
                      +++++.++.++.+++|+.|+.+.++.|++......|+.+|+++++++|+++|++|++|+.++.+...++.+ ..+.+..|
T Consensus       297 ~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~k  375 (762)
T KOG0474|consen  297 AFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGK  375 (762)
T ss_pred             HHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHH
Confidence            99999888999999999999999999999866678999999999999999999999999997777666655 55677889


Q ss_pred             HHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCc
Q 006517          242 VLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSK  321 (642)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~  321 (642)
                      ++++++++++++++.|..|++.+|.|||.+.....||+         |+|++|+||++++++++++|++++++|+..+ +
T Consensus       376 vlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~  445 (762)
T KOG0474|consen  376 VLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-N  445 (762)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-C
Confidence            99999999999999999999999999997644334553         8999999999999999999999999999866 8


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHh
Q 006517          322 EFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLC  401 (642)
Q Consensus       322 ~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~  401 (642)
                      +|....|++|++..++++++|+|..+|.|+|.|++.+||+.||++|.++..+..++||.||++||||+++|++|+++|.+
T Consensus       446 ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~  525 (762)
T KOG0474|consen  446 EFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLC  525 (762)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCchHHHHHhHHHHhCCeEEEEeeee
Confidence            89999999999999999999999999999999999999999999999998878899999999999999999999999999


Q ss_pred             hHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCccccccccccccccccccccCCeEEecCcccHHHH
Q 006517          402 VILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNI  481 (642)
Q Consensus       402 vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~~~~~v~~~~tv~~~  481 (642)
                      ||++|+| +-.+++|+|++-++|.++.+.|++++||.+++.+|+|++++++++.+++++++|+|++++++++..+.+..+
T Consensus       526 VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~I  604 (762)
T KOG0474|consen  526 VILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVI  604 (762)
T ss_pred             hHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHH
Confidence            9999999 557888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccc-cccCCcccccccchhhhcccCCCCCccccccc
Q 006517          482 MHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQ-KTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLD  560 (642)
Q Consensus       482 ~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (642)
                      .+++++++|++|||||+....+.+++.|+|-|+++..+++++++.++ +...+......++.+|+.+    +.++++|+.
T Consensus       605 v~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~----r~~~i~dv~  680 (762)
T KOG0474|consen  605 VDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAK----REPSIEDVH  680 (762)
T ss_pred             HHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhh----cCCchhhhh
Confidence            99999999999999998643344799999999999999998887643 2222222234555666654    456889999


Q ss_pred             cchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhccCcccccc
Q 006517          561 IKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNR  640 (642)
Q Consensus       561 ~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~~~~~~~~  640 (642)
                      +++++++.++|++++|+++|++|++++++.++..+|++.++||+.||++   .++++|++||+|+.++...+..++..+.
T Consensus       681 lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~---~~~~~gilTR~D~~~~~~l~~~~~v~~~  757 (762)
T KOG0474|consen  681 LTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK---TNRVVGILTRKDLARYRILGLEPHVDEL  757 (762)
T ss_pred             cchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC---CCceeEEEehhhhhhHHHhccccccccc
Confidence            9999999999999999999999999999999999999999999999998   7789999999999998888888777654


Q ss_pred             C
Q 006517          641 H  641 (642)
Q Consensus       641 ~  641 (642)
                      |
T Consensus       758 ~  758 (762)
T KOG0474|consen  758 K  758 (762)
T ss_pred             c
Confidence            3

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]	Back alignment and domain information

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]	Back alignment and domain information

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism	Back alignment and domain information

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR03520 GldE gliding motility-associated protein GldE	Back alignment and domain information

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional	Back alignment and domain information

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea	Back alignment and domain information

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain	Back alignment and domain information

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain	Back alignment and domain information

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream	Back alignment and domain information

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR01137 cysta_beta cystathionine beta-synthase	Back alignment and domain information

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50	Back alignment and domain information

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR00400 mgtE Mg2+ transporter (mgtE)	Back alignment and domain information

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein	Back alignment and domain information

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	Back alignment and domain information

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein	Back alignment and domain information

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain	Back alignment and domain information

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream	Back alignment and domain information

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain	Back alignment and domain information

>TIGR00393 kpsF KpsF/GutQ family protein	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream	Back alignment and domain information

>COG0517 FOG: CBS domain [General function prediction only]	Back alignment and domain information

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE	Back alignment and domain information

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea	Back alignment and domain information

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>PRK11573 hypothetical protein; Provisional	Back alignment and domain information

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]	Back alignment and domain information

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00571 CBS: CBS domain CBS domain web page	Back alignment and domain information

>PF00571 CBS: CBS domain CBS domain web page	Back alignment and domain information

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>TIGR00400 mgtE Mg2+ transporter (mgtE)	Back alignment and domain information

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism	Back alignment and domain information

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]	Back alignment and domain information

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream	Back alignment and domain information

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE	Back alignment and domain information

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream	Back alignment and domain information

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein	Back alignment and domain information

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]	Back alignment and domain information

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins	Back alignment and domain information

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream	Back alignment and domain information

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes	Back alignment and domain information

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein	Back alignment and domain information

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins	Back alignment and domain information

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA	Back alignment and domain information

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain	Back alignment and domain information

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	Back alignment and domain information

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]	Back alignment and domain information

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein	Back alignment and domain information

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea	Back alignment and domain information

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional	Back alignment and domain information

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain	Back alignment and domain information

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC	Back alignment and domain information

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain	Back alignment and domain information

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50	Back alignment and domain information

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain	Back alignment and domain information

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea	Back alignment and domain information

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG0517 FOG: CBS domain [General function prediction only]	Back alignment and domain information

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria	Back alignment and domain information

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria	Back alignment and domain information

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>TIGR01137 cysta_beta cystathionine beta-synthase	Back alignment and domain information

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	Back alignment and domain information

>TIGR00393 kpsF KpsF/GutQ family protein	Back alignment and domain information

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain	Back alignment and domain information

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional	Back alignment and domain information

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream	Back alignment and domain information

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional	Back alignment and domain information

>TIGR03520 GldE gliding motility-associated protein GldE	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit	Back alignment and domain information

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11573 hypothetical protein; Provisional	Back alignment and domain information

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]	Back alignment and domain information

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]	Back alignment and domain information

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein	Back alignment and domain information

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02865 spore_II_E stage II sporulation protein E	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		642
3org_A		632	Crystal Structure Of A Eukaryotic Clc Transporter L		2e-04

>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632

Back alignment and structure

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 30  GSGIPEVKAYLNGI--DAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANL 87
           GSG+P++K+ L+G      S L    LF K  G I  +  G  VG EGP VH    IA+ 
Sbjct: 79  GSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQ 138
Query: 88  LGQGGSKKYHLTWRWLR 104
             + G  K   T R LR
Sbjct: 139 FYRLGVFKELCTDRALR 155

PyMOL of 3org

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		642
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	1e-156
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	6e-54
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	3e-51
2j9l_A		185	Chloride channel protein 5; ION channel, ION trans	2e-29
2pfi_A		164	Chloride channel protein CLC-Ka; cystathionine bet	2e-10
1o50_A		157	CBS domain-containing predicted protein TM0935; CB	3e-09
2d4z_A		250	Chloride channel protein; CLC chloride channel cyt	4e-08
2d4z_A		250	Chloride channel protein; CLC chloride channel cyt	5e-04
3sl7_A		180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-08
3ctu_A		156	CBS domain protein; structural genomics, PSI-2, pr	2e-06
2emq_A		157	Hypothetical conserved protein; CBS domains, NPPSF	5e-06
1pbj_A		125	Hypothetical protein; structural genomics, domain,	7e-06
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-06
3kh5_A		280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-05
2yzi_A		138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-05
1y5h_A		133	Hypothetical protein RV2626C; CBS domain, unknown	2e-05
3ddj_A		296	CBS domain-containing protein; structural genomics	2e-05
3ddj_A		296	CBS domain-containing protein; structural genomics	7e-05
1pvm_A		184	Conserved hypothetical protein TA0289; structural	3e-05
2o16_A		160	Acetoin utilization protein ACUB, putative; struct	3e-05
3lqn_A		150	CBS domain protein; csgid, structural genomics, un	3e-05
2rih_A		141	Conserved protein with 2 CBS domains; bateman doma	5e-05
2p9m_A		138	Hypothetical protein MJ0922; structural genomics,	5e-05
1yav_A		159	Hypothetical protein BSU14130; cystathionine beta	1e-04
3fv6_A		159	YQZB protein; CBS domain dimer, metabolism regulat	2e-04
2ef7_A		133	Hypothetical protein ST2348; CBS-domain, structura	6e-04

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632	Back alignment and structure

 Score =  463 bits (1194), Expect = e-156
 Identities = 140/643 (21%), Positives = 247/643 (38%), Gaps = 83/643 (12%)

Query: 1   MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGI--DAHSILAPSTLFVKI 58
            G++      + L +L+   CA ++  A GSG+P++K+ L+G      S L    LF K 
Sbjct: 50  AGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKA 109

Query: 59  FGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITC 118
            G I  +  G  VG EGP VH    IA+   + G         +     +   R   +  
Sbjct: 110 LGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLG--------VFKELCTDRALRLQTLAA 161

Query: 119 GAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCG 178
             A G+A +F AP+GGVL+++E  AS++     W+   +    A+V              
Sbjct: 162 ACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL---------- 211

Query: 179 LFGQGGLIMFDV-NSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERG 237
            +    +  F+  N   +  S    L    LG + G+ G+ +   V  +      +    
Sbjct: 212 -YTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELR--MRHYP 268

Query: 238 PIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYN 297
              +  LV  V+L  S   Y                                  P    N
Sbjct: 269 GTNRYFLVGVVALFASALQYPFRLF--------------------------ALDPRATIN 302

Query: 298 DLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVIL 357
           DL         D             F  + L++  +  + L  ++ G+ +P+G+F+P  L
Sbjct: 303 DLFKAVPLYQTD------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFL 350

Query: 358 AGASYGRLVGNLLGAL--SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLP 415
            GA +GRL G L+  +  + +  G +A++GAA+F  G  R  +S  VI+ E+T  +  L 
Sbjct: 351 IGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLV 409

Query: 416 LVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSG--PLITFS 473
            V++ +L++  V ++FN+ +Y+ +V +K LPY+          + A +++          
Sbjct: 410 PVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLF 469

Query: 474 GVEKVGNIMHAL-RLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532
              +  +I   L +      FPVID         L G + R  ++  L+       + + 
Sbjct: 470 PDSEPQHIKGILEKFPNRLVFPVIDAN-----GYLLGAISRKEIVDRLQHVLEDVPEPIA 524

Query: 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLD------IKEEEMEMFVDLHPITNTSPYTVVET 586
           G   +    A D ++   G   +    +           +E    L    + SP  V   
Sbjct: 525 GHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSY 584

Query: 587 MSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629
             + +   LF  L    + V  +  G+  +VGI+ R D    +
Sbjct: 585 SLVRQLHFLFVMLMPSMIYVTER--GK--LVGIVEREDVAYGY 623

PyMOL of 3org

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466	Back alignment and structure

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185	Back alignment and structure

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164	Back alignment and structure

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157	Back alignment and structure

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250	Back alignment and structure

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250	Back alignment and structure

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180	Back alignment and structure

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157	Back alignment and structure

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280	Back alignment and structure

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280	Back alignment and structure

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138	Back alignment and structure

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133	Back alignment and structure

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296	Back alignment and structure

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296	Back alignment and structure

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184	Back alignment and structure

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160	Back alignment and structure

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150	Back alignment and structure

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141	Back alignment and structure

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138	Back alignment and structure

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159	Back alignment and structure

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159	Back alignment and structure

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		642
d1otsa_		444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	5e-45
d2j9la1		169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-07
d2d4za3		160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	3e-06
d2yzqa1		156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-05
d2v8qe2		159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-05
d2ooxe1		179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	7e-04
d2v8qe1		145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d1jr1a4		120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d2nyca1		140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.002
d1ksqa_		75	g.23.1.1 (A:) Transforming growth factor-beta bind	0.004

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  164 bits (415), Expect = 5e-45
 Identities = 99/435 (22%), Positives = 164/435 (37%), Gaps = 75/435 (17%)

Query: 9   INLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAG 68
            +  LA+    L    AP A GSGIPE++  L       +     L VK FG +  +  G
Sbjct: 69  CSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGG 126

Query: 69  FVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAF 128
            V+G+EGP V  G  I  ++              +   K D  R  L+  GAAAG+A AF
Sbjct: 127 MVLGREGPTVQIGGNIGRMVLD------------IFRLKGDEARHTLLATGAAAGLAAAF 174

Query: 129 RAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMF 188
            AP+ G+LF +EE    +R  L+        V+       +    +    L   G L   
Sbjct: 175 NAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMST---IMYRIFNHEVALIDVGKLSDA 231

Query: 189 DVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAV 248
            +N+         L   + LG+I GIFG  +N  V  +      ++       VL+  A+
Sbjct: 232 PLNT---------LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAI 282

Query: 249 SLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTND 308
             L     +  P  S                              G +N +         
Sbjct: 283 GGLCGLLGFVAPATSG-----------------------------GGFNLIPIATAG--- 310

Query: 309 DAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGN 368
                         F +  L+  FVA     ++ +    P G+F P++  G   G   G 
Sbjct: 311 -------------NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGM 357

Query: 369 LLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISK 425
           +   L     L+ G FA+ G  + L  ++R  ++  +++LE+T+N  ++  +++  L + 
Sbjct: 358 VAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGAT 417

Query: 426 TVADSFN-QGVYDQI 439
            +A     + +Y  I
Sbjct: 418 LLAQFTGGKPLYSAI 432

PyMOL of d1otsa_

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156	Back information, alignment and structure

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179	Back information, alignment and structure

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145	Back information, alignment and structure

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120	Back information, alignment and structure

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		642
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	100.0
d1pvma4		142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.86
d2d4za3		160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d2yzqa1		156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d2o16a3		139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.85
d2ef7a1		127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.85
d2yzia1		132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.85
d2yvxa2		144	Magnesium transporter MgtE {Thermus thermophilus [	99.84
d2yzqa2		122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d3ddja1		141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d1y5ha3		123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.83
d2ouxa2		127	Magnesium transporter MgtE {Enterococcus faecalis	99.83
d1vr9a3		121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.83
d2j9la1		169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.82
d1pbja3		120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.81
d3ddja2		135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d1yava3		132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d2rc3a1		127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.8
d1zfja4		126	Type II inosine monophosphate dehydrogenase CBS do	99.8
d1o50a3		145	Hypothetical protein TM0935 {Thermotoga maritima [	99.78
d2riha1		131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.78
d2ooxe2		153	Uncharacterized protein C1556.08c {Schizosaccharom	99.78
d2v8qe2		159	5'-AMP-activated protein kinase subunit gamma-1, A	99.77
d2nyca1		140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.76
d2v8qe1		145	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d2ooxe1		179	Uncharacterized protein C1556.08c {Schizosaccharom	99.75
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	99.69
d1jr1a4		120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2yzqa1		156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.87
d2o16a3		139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.8
d2yzia1		132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.79
d2ouxa2		127	Magnesium transporter MgtE {Enterococcus faecalis	98.77
d1pvma4		142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.7
d1vr9a3		121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.65
d1y5ha3		123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.65
d2yvxa2		144	Magnesium transporter MgtE {Thermus thermophilus [	98.65
d2yzqa2		122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.64
d2d4za3		160	Chloride channel protein, CBS tandem {Marbled elec	98.6
d1yava3		132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.58
d1o50a3		145	Hypothetical protein TM0935 {Thermotoga maritima [	98.56
d2ef7a1		127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.56
d3ddja1		141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.56
d1pbja3		120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.54
d3ddja2		135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.53
d1zfja4		126	Type II inosine monophosphate dehydrogenase CBS do	98.52
d2nyca1		140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.45
d2riha1		131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.44
d2rc3a1		127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.44
d2j9la1		169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.43
d2ooxe2		153	Uncharacterized protein C1556.08c {Schizosaccharom	98.36
d2v8qe1		145	5'-AMP-activated protein kinase subunit gamma-1, A	98.28
d2ooxe1		179	Uncharacterized protein C1556.08c {Schizosaccharom	98.16
d1jr1a4		120	Type II inosine monophosphate dehydrogenase CBS do	98.15
d2v8qe2		159	5'-AMP-activated protein kinase subunit gamma-1, A	98.01
d1lkvx_		213	FliG {Thermotoga maritima [TaxId: 2336]}	82.2

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=464.68  Aligned_cols=367  Identities=27%  Similarity=0.422  Sum_probs=302.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             67989999999999999997705766789999999881978788775006789899889998507867883259999999
Q 006517            4 VANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGAC   83 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~~~~p~~~GsGip~v~~~l~~~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~Egp~v~~g~~   83 (642)
                      ++|+..+...+.+++++++++.|+++|||+||++.++++.  ++.+++|+.+.|++++++++++|+|+|||||++|+|++
T Consensus        64 ~~~~~~~~~~~~~~~~l~~~~~p~~~GsGipev~~~l~~~--~~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~  141 (444)
T d1otsa_          64 TVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGN  141 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             9999999999999999998617756789989999998278--88762889999999999998168876665509999999


Q ss_pred             HHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf             988740258522000242420147934456899873432223210387311568899986532124--689999999999
Q 006517           84 IANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSA--LLWRTFFTTAVV  161 (642)
Q Consensus        84 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~--~~~~~~~~~~ia  161 (642)
                      ++++++|    ++       |. +++.++|.+++||+|||++++||||++|++|++|++.++++..  .+++.+.++..+
T Consensus       142 i~~~l~~----~~-------~~-~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~  209 (444)
T d1otsa_         142 IGRMVLD----IF-------RL-KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMS  209 (444)
T ss_dssp             HHHHHHH----HT-------TC-CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHH----HH-------HH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999----98-------53-048766788999988888612688324556656787620057888998887666777


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99999889885078644447872168861478888785789999999999999999999999999999753110287025
Q 006517          162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFK  241 (642)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~~~~~~  241 (642)
                      ..+.+.           ..+..+  .++++ ....++..++++++++|++||++|.+|++...+..+++++.+...+.++
T Consensus       210 ~~~~~~-----------~~~~~~--~~~~~-~~~~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~  275 (444)
T d1otsa_         210 TIMYRI-----------FNHEVA--LIDVG-KLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKW  275 (444)
T ss_dssp             HHHHHH-----------HSCSCC--SSCCC-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHEEE-----------CCCCCC--CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             620000-----------257643--24566-4467878999999999999999999999999999999998530453167


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf             78889999985431025433335568998876787888788897434557998610245531068447888543069986
Q 006517          242 VLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSK  321 (642)
Q Consensus       242 ~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~  321 (642)
                      .+.+.+++.++++++++.|+.                 .|.            +|+.            ++..+++    
T Consensus       276 ~l~~~~~~~l~~ll~~~~p~~-----------------~g~------------G~~~------------~~~~~~~----  310 (444)
T d1otsa_         276 VLMGGAIGGLCGLLGFVAPAT-----------------SGG------------GFNL------------IPIATAG----  310 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGG-----------------SSC------------STTH------------HHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHCCCCCC-----------------CCC------------CHHH------------HHHHHCC----
T ss_conf             889999999999985058655-----------------778------------5477------------8998617----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             2038899999999999998772587884320269899777766989853003---6987269999976642102033136
Q 006517          322 EFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTV  398 (642)
Q Consensus       322 ~~~~~~l~~~~v~K~~~t~~t~g~G~~GG~~~P~l~iGa~~G~~~~~~~~~~---~~~~~~~~a~iG~aa~~a~~~~~pl  398 (642)
                      +.+...++.+++.|+++|++|+++|+|||.|+|++++||+.|++++.+.+..   ...+++.|+++||+|+++|++|+|+
T Consensus       311 ~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~~~Pl  390 (444)
T d1otsa_         311 NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPL  390 (444)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86258899999999999998760388777205988999999999999999858766677899999999999999974499


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHC
Q ss_conf             675589765288510789999999999999630-821789999961
Q 006517          399 SLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK  443 (642)
Q Consensus       399 s~~~i~~E~tg~~~~l~p~~ia~~~s~~vs~~l-~~~iy~~~l~~~  443 (642)
                      |++++++|+||++++++|+|+++++|+.+++.+ ++++||.++++.
T Consensus       391 ta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~~  436 (444)
T d1otsa_         391 TGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART  436 (444)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999997888799999999999999999858998699999999

PyMOL of d1otsa_

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}	Back information, alignment and structure

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure