Citrus Sinensis ID: 006627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MKIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccEEHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mkikngflNLEQTRQCHAHIIKTHFKfsytniinpltrYNSLVTSYiknnkpssaLNIYAFMRkngsevdnftIPTILKACAQVLMTHLGKEIHGfaikngldgdaYVSNALIQMYSECGSLVSArylfdempnrdvvSWSTMIrgyhrgglpeEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMieenvfpseITILSLIIECgfvgglqlGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSartlfdgmksKDVMIWNAVISAYAQAHCIDKAFELFIHMKvskvrpnevTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAkcgdvngayRLFSEAIYRDICMWNAMMAgygmhgcgeEALIFFVDmersgvkpngiTFIGLLNAcshaglvteGKSVFDKMVhglglvpkiehYGCMVDLLGRAGLLDEAHEMIksmplrpnMIVWGALLAAsklhknpsmgeiAATQIleiepqnygynVLMSNIYAVANRWNDVAGVRRVMKEIRVkkepgfssveVNGLVHKFIRggmvnwks
Flexible Loop (DISEMBL)
mkikngflNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIrvkkepgfssvevnglvhkfirggmvnwks
Low Complexity Region (SEG)
MKIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS
Disordered region (IsUnstruct)
*****GFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNW**
Disordered Region (DISOPRED)
MKIKNG*LNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIR*GMVN***
Disordered Region (DISEMBL)
MKIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS
Disordered Region (DISPRO)
MKIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGM*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	638	2.2.26 [Sep-21-2011]
Q9LUJ2	842	Pentatricopeptide repeat-	no	no	0.926	0.701	0.380	1e-123
Q3E6Q1	809	Pentatricopeptide repeat-	yes	no	0.937	0.739	0.358	1e-120
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.924	0.677	0.369	1e-119
O82380	738	Pentatricopeptide repeat-	no	no	0.836	0.723	0.364	1e-116
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.926	0.689	0.350	1e-114
O81767	823	Pentatricopeptide repeat-	no	no	0.915	0.709	0.372	1e-112
Q9FLZ9	677	Pentatricopeptide repeat-	no	no	0.915	0.862	0.355	1e-112
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.956	0.717	0.340	1e-111
Q9SS97	660	Putative pentatricopeptid	no	no	0.927	0.896	0.346	1e-111
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.920	0.741	0.340	1e-109

>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 360/626 (57%), Gaps = 35/626 (5%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           YNSL+  Y  +   + A+ ++  M  +G   D +T P  L ACA+      G +IHG  +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
           K G   D +V N+L+  Y+ECG L SAR +FDEM  R+VVSW++MI GY R    ++A++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 159 VM-REMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217
           +  R +R  ++ P+ V M+ ++S  A + D++ G+ ++A  +RN   E +   + +AL+D
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA-FIRNSGIE-VNDLMVSALVD 279

Query: 218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEIT 277
           MY KC  +  AK+LF+    +++     M S Y+R     E + +F  M++  V P  I+
Sbjct: 280 MYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 278 ILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK 337
           +LS I  C  +  +  GK  H Y+LRNGFE    + NAL+DMY KC    +A  +FD M 
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMS 399

Query: 338 SKDVMIWNAVISAYA-------------------------------QAHCIDKAFELFIH 366
           +K V+ WN++++ Y                                Q    ++A E+F  
Sbjct: 400 NKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCS 459

Query: 367 MKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425
           M+  + V  + VTM+ + S C   GAL++ KW++ YIEK G+++DV L T LVDM+++CG
Sbjct: 460 MQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCG 519

Query: 426 DVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN 485
           D   A  +F+    RD+  W A +    M G  E A+  F DM   G+KP+G+ F+G L 
Sbjct: 520 DPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALT 579

Query: 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNM 545
           ACSH GLV +GK +F  M+   G+ P+  HYGCMVDLLGRAGLL+EA ++I+ MP+ PN 
Sbjct: 580 ACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND 639

Query: 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605
           ++W +LLAA ++  N  M   AA +I  + P+  G  VL+SN+YA A RWND+A VR  M
Sbjct: 640 VIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSM 699

Query: 606 KEIRVKKEPGFSSVEVNGLVHKFIRG 631
           KE  ++K PG SS+++ G  H+F  G
Sbjct: 700 KEKGLRKPPGTSSIQIRGKTHEFTSG 725

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/600 (35%), Positives = 356/600 (59%), Gaps = 2/600 (0%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           Y++++  + K +    AL  +  MR +  E   +    +LK C       +GKEIHG  +
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
           K+G   D +    L  MY++C  +  AR +FD MP RD+VSW+T++ GY + G+   ALE
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query: 159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218
           +++ M   +++PS + ++S++   + +  + +GK IH   +R+  D    V I+TAL+DM
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL--VNISTALVDM 280

Query: 219 YSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI 278
           Y+KCG+L  A+QLF+ + + +VVSW  MI  Y++     E + +F +M++E V P+++++
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340

Query: 279 LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS 338
           +  +  C  +G L+ G+++H   +  G + ++++ N+L+ MY KC+E+ +A ++F  ++S
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398
           + ++ WNA+I  +AQ      A   F  M+   V+P+  T V +++   E       KW+
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI 460

Query: 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCG 458
           H  + +  L+ +V + TALVDMYAKCG +  A  +F     R +  WNAM+ GYG HG G
Sbjct: 461 HGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFG 520

Query: 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC 518
           + AL  F +M++  +KPNG+TF+ +++ACSH+GLV  G   F  M     +   ++HYG 
Sbjct: 521 KAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGA 580

Query: 519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578
           MVDLLGRAG L+EA + I  MP++P + V+GA+L A ++HKN +  E AA ++ E+ P +
Sbjct: 581 MVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDD 640

Query: 579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS 638
            GY+VL++NIY  A+ W  V  VR  M    ++K PG S VE+   VH F  G   +  S
Sbjct: 641 GGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDS 700

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 359/603 (59%), Gaps = 13/603 (2%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           +N L+    K+   S ++ ++  M  +G E+D++T   + K+ + +   H G+++HGF +
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
           K+G      V N+L+  Y +   + SAR +FDEM  RDV+SW+++I GY   GL E+ L 
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query: 159 VMREMRFMDIRPSEVAMISMVSLFADVAD---VDLGKAIHACVVRNC--KDEKLGVAIAT 213
           V  +M    I   E+ + ++VS+FA  AD   + LG+A+H+  V+ C  ++++       
Sbjct: 283 VFVQMLVSGI---EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF----CN 335

Query: 214 ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP 273
            L+DMYSKCG+L  AK +F  ++  SVVS+T MI+GY R     E V+LF EM EE + P
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395

Query: 274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF 333
              T+ +++  C     L  GK +H +I  N   F + ++NAL+DMY KC  ++ A  +F
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455

Query: 334 DGMKSKDVMIWNAVISAYAQAHCIDKAFELF-IHMKVSKVRPNEVTMVGLLSLCTEAGAL 392
             M+ KD++ WN +I  Y++    ++A  LF + ++  +  P+E T+  +L  C    A 
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515

Query: 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGY 452
           + G+ +H YI + G   D  +  +LVDMYAKCG +  A+ LF +   +D+  W  M+AGY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575

Query: 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512
           GMHG G+EA+  F  M ++G++ + I+F+ LL ACSH+GLV EG   F+ M H   + P 
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635

Query: 513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572
           +EHY C+VD+L R G L +A+  I++MP+ P+  +WGALL   ++H +  + E  A ++ 
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVF 695

Query: 573 EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGG 632
           E+EP+N GY VLM+NIYA A +W  V  +R+ + +  ++K PG S +E+ G V+ F+ G 
Sbjct: 696 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755

Query: 633 MVN 635
             N
Sbjct: 756 SSN 758

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  420 bits (1080), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 349/581 (60%), Gaps = 47/581 (8%)

Query: 91  KEIHGFAIKNGLDGDAYVSNALIQM--YSECGSLVSARYLFDEMPNRDVVSWSTMIRGYH 148
           K+ HG  I+ G   D Y ++ L  M   S   SL  AR +FDE+P  +  +W+T+IR Y 
Sbjct: 47  KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106

Query: 149 RGGLPEEALEVMREMRFMDI------RPSEVAMISMVSLFADVADVDLGKAIHACVVRNC 202
            G  P     V+    F+D+       P++     ++   A+V+ + LG+++H   V++ 
Sbjct: 107 SGPDP-----VLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161

Query: 203 KDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRL 262
                 V +A +LI  Y  CG+L  A ++F  + +  VVSW  MI+G+++    ++ + L
Sbjct: 162 VGSD--VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 219

Query: 263 FAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGK 322
           F +M  E+V  S +T++ ++  C  +  L+ G+ + +YI  N    +L +ANA++DMY K
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTK 279

Query: 323 CREIRSARTLFDGMK-------------------------------SKDVMIWNAVISAY 351
           C  I  A+ LFD M+                                KD++ WNA+ISAY
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339

Query: 352 AQAHCIDKAFELFIHMKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD 410
            Q    ++A  +F  +++ K ++ N++T+V  LS C + GALE+G+W+H+YI+K G+ ++
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMN 399

Query: 411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER 470
             + +AL+ MY+KCGD+  +  +F+    RD+ +W+AM+ G  MHGCG EA+  F  M+ 
Sbjct: 400 FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459

Query: 471 SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLD 530
           + VKPNG+TF  +  ACSH GLV E +S+F +M    G+VP+ +HY C+VD+LGR+G L+
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519

Query: 531 EAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590
           +A + I++MP+ P+  VWGALL A K+H N ++ E+A T++LE+EP+N G +VL+SNIYA
Sbjct: 520 KAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYA 579

Query: 591 VANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
              +W +V+ +R+ M+   +KKEPG SS+E++G++H+F+ G
Sbjct: 580 KLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSG 620

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 346/594 (58%), Gaps = 3/594 (0%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           +N ++  Y K     S +  ++ MR +    +  T   +L  CA  L+  LG ++HG  +
Sbjct: 207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
            +G+D +  + N+L+ MYS+CG    A  LF  M   D V+W+ MI GY + GL EE+L 
Sbjct: 267 VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLT 326

Query: 159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218
              EM    + P  +   S++   +   +++  K IH  ++R+     L + + +ALID 
Sbjct: 327 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH--SISLDIFLTSALIDA 384

Query: 219 YSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI 278
           Y KC  ++ A+ +F++ N   VV +T MISGY+      + + +F  +++  + P+EIT+
Sbjct: 385 YFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITL 444

Query: 279 LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS 338
           +S++   G +  L+LG+ LH +I++ GF+    +  A++DMY KC  +  A  +F+ +  
Sbjct: 445 VSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSK 504

Query: 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398
           +D++ WN++I+  AQ+     A ++F  M VS +  + V++   LS C    +   GK +
Sbjct: 505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564

Query: 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCG 458
           H ++ K  L  DV  ++ L+DMYAKCG++  A  +F     ++I  WN+++A  G HG  
Sbjct: 565 HGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKL 624

Query: 459 EEALIFFVDM-ERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG 517
           +++L  F +M E+SG++P+ ITF+ ++++C H G V EG   F  M    G+ P+ EHY 
Sbjct: 625 KDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYA 684

Query: 518 CMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577
           C+VDL GRAG L EA+E +KSMP  P+  VWG LL A +LHKN  + E+A++++++++P 
Sbjct: 685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPS 744

Query: 578 NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
           N GY VL+SN +A A  W  V  VR +MKE  V+K PG+S +E+N   H F+ G
Sbjct: 745 NSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSG 798

Arabidopsis thaliana (taxid: 3702)

>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 358/604 (59%), Gaps = 20/604 (3%)

Query: 39  YNSLVTSYIKNNKPSSALNIYA-FMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFA 97
           +N +++ Y +    S  +  ++ FM  +G   D  T P++LKAC  V+    G +IH  A
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLA 176

Query: 98  IKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157
           +K G   D YV+ +LI +YS   ++ +AR LFDEMP RD+ SW+ MI GY + G  +EAL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query: 158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217
            +   +R MD     V ++S++S   +  D + G  IH+  +++  + +L V+    LID
Sbjct: 237 TLSNGLRAMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS--NKLID 290

Query: 218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINE----GVRLFAEMIEENVFP 273
           +Y++ G L   +++F+R+    ++SW  +I  Y    E+NE     + LF EM    + P
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAY----ELNEQPLRAISLFQEMRLSRIQP 346

Query: 274 SEITILSLIIECGFVGGLQLGKWLHAYILRNG-FEFSLAMANALVDMYGKCREIRSARTL 332
             +T++SL      +G ++  + +  + LR G F   + + NA+V MY K   + SAR +
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 333 FDGMKSKDVMIWNAVISAYAQAHCIDKAFELF-IHMKVSKVRPNEVTMVGLLSLCTEAGA 391
           F+ + + DV+ WN +IS YAQ     +A E++ I  +  ++  N+ T V +L  C++AGA
Sbjct: 407 FNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466

Query: 392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAG 451
           L  G  LH  + K GL +DV + T+L DMY KCG +  A  LF +    +   WN ++A 
Sbjct: 467 LRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIAC 526

Query: 452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP 511
           +G HG GE+A++ F +M   GVKP+ ITF+ LL+ACSH+GLV EG+  F+ M    G+ P
Sbjct: 527 HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITP 586

Query: 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQI 571
            ++HYGCMVD+ GRAG L+ A + IKSM L+P+  +WGALL+A ++H N  +G+IA+  +
Sbjct: 587 SLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHL 646

Query: 572 LEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
            E+EP++ GY+VL+SN+YA A +W  V  +R +     ++K PG+SS+EV+  V  F  G
Sbjct: 647 FEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTG 706

Query: 632 GMVN 635
              +
Sbjct: 707 NQTH 710

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 337/596 (56%), Gaps = 12/596 (2%)

Query: 34  NPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEV--DNFTIPTILKACAQVLMTHLGK 91
           + L  YN ++  Y++      A++++  M   G +   D +T P + KA  ++    LG 
Sbjct: 78  SSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGL 137

Query: 92  EIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGG 151
            +HG  +++    D YV NAL+ MY   G +  AR +FD M NRDV+SW+TMI GY+R G
Sbjct: 138 VVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNG 197

Query: 152 LPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLG--V 209
              +AL +   M    +      ++SM+ +   + D+++G+ +H  V    ++++LG  +
Sbjct: 198 YMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV----EEKRLGDKI 253

Query: 210 AIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEE 269
            +  AL++MY KCG +  A+ +F+R+ +  V++WT MI+GY    ++   + L   M  E
Sbjct: 254 EVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFE 313

Query: 270 NVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSA 329
            V P+ +TI SL+  CG    +  GK LH + +R      + +  +L+ MY KC+ +   
Sbjct: 314 GVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLC 373

Query: 330 RTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEA 389
             +F G        W+A+I+   Q   +  A  LF  M+   V PN  T+  LL      
Sbjct: 374 FRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAAL 433

Query: 390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS----EAIYRDICMW 445
             L     +H Y+ K G    +   T LV +Y+KCG +  A+++F+    +   +D+ +W
Sbjct: 434 ADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLW 493

Query: 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH 505
            A+++GYGMHG G  AL  F++M RSGV PN ITF   LNACSH+GLV EG ++F  M+ 
Sbjct: 494 GALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLE 553

Query: 506 GLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGE 565
               + +  HY C+VDLLGRAG LDEA+ +I ++P  P   VWGALLAA   H+N  +GE
Sbjct: 554 HYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGE 613

Query: 566 IAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEV 621
           +AA ++ E+EP+N G  VL++NIYA   RW D+  VR +M+ + ++K+PG S++E+
Sbjct: 614 MAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEI 669

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 349/663 (52%), Gaps = 53/663 (7%)

Query: 16  CHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIP 75
           C +H +    +F  ++    +  +NSL+ SY  N   +  L ++  M       DN+T P
Sbjct: 74  CLSHAVSLLRRFPPSDA--GVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFP 131

Query: 76  TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR 135
            + KAC ++     G+  H  ++  G   + +V NAL+ MYS C SL  AR +FDEM   
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVW 191

Query: 136 DVVSWSTMIRGYHRGGLPEEALEVMREM-RFMDIRPSEVAMISMVSLFADVADVDLGKAI 194
           DVVSW+++I  Y + G P+ ALE+   M      RP  + +++++   A +    LGK +
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251

Query: 195 HACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN 254
           H   V +   + + V     L+DMY+KCG +  A  +F+ ++   VVSW  M++GY +  
Sbjct: 252 HCFAVTSEMIQNMFVG--NCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309

Query: 255 EINEGVRLFAEMIEENVF-----------------------------------PSEITIL 279
              + VRLF +M EE +                                    P+E+T++
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369

Query: 280 SLIIECGFVGGLQLGKWLHAYILR-------NGFEFSLAMANALVDMYGKCREIRSARTL 332
           S++  C  VG L  GK +H Y ++       NG      + N L+DMY KC+++ +AR +
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAM 429

Query: 333 FDGM--KSKDVMIWNAVISAYAQAHCIDKAFELFIHM--KVSKVRPNEVTMVGLLSLCTE 388
           FD +  K +DV+ W  +I  Y+Q    +KA EL   M  +  + RPN  T+   L  C  
Sbjct: 430 FDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACAS 489

Query: 389 AGALEMGKWLHTY-IEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNA 447
             AL +GK +H Y +  Q   V + +   L+DMYAKCG ++ A  +F   + ++   W +
Sbjct: 490 LAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTS 549

Query: 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507
           +M GYGMHG GEEAL  F +M R G K +G+T + +L ACSH+G++ +G   F++M    
Sbjct: 550 LMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVF 609

Query: 508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIA 567
           G+ P  EHY C+VDLLGRAG L+ A  +I+ MP+ P  +VW A L+  ++H    +GE A
Sbjct: 610 GVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYA 669

Query: 568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVE-VNGLVH 626
           A +I E+   + G   L+SN+YA A RW DV  +R +M+   VKK PG S VE + G   
Sbjct: 670 AEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTT 729

Query: 627 KFI 629
            F+
Sbjct: 730 FFV 732

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 343/598 (57%), Gaps = 6/598 (1%)

Query: 36  LTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHG 95
           L ++N+L+ S  +  +    L  ++ M ++  + DNFT+P  LKAC ++   + G+ IHG
Sbjct: 25  LYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHG 84

Query: 96  FAIKN-GLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPE 154
           F  K+  L  D YV ++LI MY +CG ++ A  +FDE+   D+V+WS+M+ G+ + G P 
Sbjct: 85  FVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPY 144

Query: 155 EALEVMREMRFM-DIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIAT 213
           +A+E  R M    D+ P  V +I++VS    +++  LG+ +H  V+R      L  ++  
Sbjct: 145 QAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDL--SLVN 202

Query: 214 ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP 273
           +L++ Y+K      A  LF  + +  V+SW+ +I+ Y++     E + +F +M+++   P
Sbjct: 203 SLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEP 262

Query: 274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF 333
           +  T+L ++  C     L+ G+  H   +R G E  + ++ ALVDMY KC     A  +F
Sbjct: 263 NVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVF 322

Query: 334 DGMKSKDVMIWNAVISAYAQAHCIDKAFELF-IHMKVSKVRPNEVTMVGLLSLCTEAGAL 392
             +  KDV+ W A+IS +       ++ E F I +  +  RP+ + MV +L  C+E G L
Sbjct: 323 SRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFL 382

Query: 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGY 452
           E  K  H+Y+ K G + +  +  +LV++Y++CG +  A ++F+    +D  +W +++ GY
Sbjct: 383 EQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGY 442

Query: 453 GMHGCGEEALIFFVDMERSG-VKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP 511
           G+HG G +AL  F  M +S  VKPN +TF+ +L+ACSHAGL+ EG  +F  MV+   L P
Sbjct: 443 GIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAP 502

Query: 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQI 571
            +EHY  +VDLLGR G LD A E+ K MP  P   + G LL A ++H+N  M E  A ++
Sbjct: 503 NLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKL 562

Query: 572 LEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFI 629
            E+E  + GY +LMSN+Y V   W +V  +R  +K+  +KK    S +E+   VH+F+
Sbjct: 563 FELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFV 620

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/596 (34%), Positives = 328/596 (55%), Gaps = 9/596 (1%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGS-EVDNFTIPTILKACAQVLMTHLGKEIHGFA 97
           +N L+  +  N  P S+L+++A +RK+   + ++ T    + A +       G+ IHG A
Sbjct: 86  FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQA 145

Query: 98  IKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157
           + +G D +  + + +++MY +   +  AR +FD MP +D + W+TMI GY +  +  E++
Sbjct: 146 VVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 158 EVMREMRFMD-IRPSEVAMISMVSLFADVADVDLGKAIHACVVRN-CKDEKLGVAIATAL 215
           +V R++      R     ++ ++   A++ ++ LG  IH+   +  C        + T  
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY---VLTGF 262

Query: 216 IDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275
           I +YSKCG +     LF    +  +V++  MI GY    E    + LF E++        
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322

Query: 276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDG 335
            T++SL+      G L L   +H Y L++ F    +++ AL  +Y K  EI SAR LFD 
Sbjct: 323 STLVSLV---PVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDE 379

Query: 336 MKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMG 395
              K +  WNA+IS Y Q    + A  LF  M+ S+  PN VT+  +LS C + GAL +G
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG 439

Query: 396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH 455
           KW+H  +     E  + + TAL+ MYAKCG +  A RLF     ++   WN M++GYG+H
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLH 499

Query: 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515
           G G+EAL  F +M  SG+ P  +TF+ +L ACSHAGLV EG  +F+ M+H  G  P ++H
Sbjct: 500 GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559

Query: 516 YGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575
           Y CMVD+LGRAG L  A + I++M + P   VW  LL A ++HK+ ++    + ++ E++
Sbjct: 560 YACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD 619

Query: 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
           P N GY+VL+SNI++    +   A VR+  K+ ++ K PG++ +E+    H F  G
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
147857367	771	hypothetical protein VITISV_034275 [Viti	0.847	0.701	0.677	0.0
356503240	801	PREDICTED: pentatricopeptide repeat-cont	0.978	0.779	0.600	0.0
449479821	745	PREDICTED: pentatricopeptide repeat-cont	0.946	0.810	0.561	0.0
224125684	705	predicted protein [Populus trichocarpa]	0.747	0.676	0.622	0.0
359488035	731	PREDICTED: pentatricopeptide repeat-cont	0.769	0.671	0.524	1e-156
148909481	795	unknown [Picea sitchensis]	0.979	0.786	0.405	1e-139
224092370	854	predicted protein [Populus trichocarpa]	0.929	0.694	0.365	1e-129
125573515	813	hypothetical protein OsJ_04972 [Oryza sa	0.968	0.760	0.383	1e-127
125529330	813	hypothetical protein OsI_05438 [Oryza sa	0.968	0.760	0.383	1e-127
356540339	836	PREDICTED: pentatricopeptide repeat-cont	0.924	0.705	0.389	1e-127

>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/561 (67%), Positives = 457/561 (81%)

Query: 71  NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFD 130
           NF  P++LKAC QV  T LGKEIHGF +K GLD D +V NAL+ MY EC  +  AR +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 131 EMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDL 190
           +M  RDVVSWSTMIR   R    + ALE++REM FM +RPSEVAM+SMV+LFAD A++ +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 191 GKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGY 250
           GKA+HA V+RN  +E +GV   TAL+DMY+KCG+L  A+QLFN L Q +VVSWT MI+G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 251 IRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSL 310
           IR N + EG +LF  M EEN+FP+EIT+LSLI+ECGF G LQLGK LHAYILRNGF  SL
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 311 AMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS 370
           A+A ALVDMYGKC +IR+AR LFD  +++DVMIW A++SAYAQA+CID+AF LF  M+ S
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGA 430
            VRP +VT+V LLSLC  AGAL++GKW+H+YI+K+ +EVD IL TALVDMYAKCGD+N A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 431 YRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490
            RLF EAI RDICMWNA++ G+ MHG GEEAL  F +MER GVKPN ITFIGLL+ACSHA
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 513

Query: 491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA 550
           GLVTEGK +F+KMVH  GLVP+IEHYGCMVDLLGRAGLLDEAHEMIKSMP++PN IVWGA
Sbjct: 514 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGA 573

Query: 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610
           L+AA +LHKNP +GE+AATQ+LEIEP+N GYNVLMSNIYA ANRW+D AGVR+ MK + +
Sbjct: 574 LVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 633

Query: 611 KKEPGFSSVEVNGLVHKFIRG 631
           KKEPG S +EVNG VH+F+ G
Sbjct: 634 KKEPGHSVIEVNGTVHEFLMG 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Glycine max]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/631 (60%), Positives = 485/631 (76%), Gaps = 7/631 (1%)

Query: 8   LNLEQTRQCHAHIIKTHFKFSYTNIINPLTRYNS-------LVTSYIKNNKPSSALNIYA 60
           +NL +T+Q H H IKT    SY   +  L  Y+S       L+TSYIKNN P+ A  IYA
Sbjct: 54  INLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYA 113

Query: 61  FMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECG 120
           +MR   +EVDNF IP++LKAC  +    LG+E+HGF +KNG  GD +V NALI MYSE G
Sbjct: 114 YMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVG 173

Query: 121 SLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVS 180
           SL  AR LFD++ N+DVVSWSTMIR Y R GL +EAL+++R+M  M ++PSE+ MIS+  
Sbjct: 174 SLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITH 233

Query: 181 LFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSV 240
           + A++AD+ LGKA+HA V+RN K  K GV + TALIDMY KC NLAYA+++F+ L++ S+
Sbjct: 234 VLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASI 293

Query: 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY 300
           +SWT MI+ YI CN +NEGVRLF +M+ E +FP+EIT+LSL+ ECG  G L+LGK LHA+
Sbjct: 294 ISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAF 353

Query: 301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKA 360
            LRNGF  SL +A A +DMYGKC ++RSAR++FD  KSKD+M+W+A+IS+YAQ +CID+A
Sbjct: 354 TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEA 413

Query: 361 FELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDM 420
           F++F+HM    +RPNE TMV LL +C +AG+LEMGKW+H+YI+KQG++ D+ILKT+ VDM
Sbjct: 414 FDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDM 473

Query: 421 YAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF 480
           YA CGD++ A+RLF+EA  RDI MWNAM++G+ MHG GE AL  F +ME  GV PN ITF
Sbjct: 474 YANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF 533

Query: 481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP 540
           IG L+ACSH+GL+ EGK +F KMVH  G  PK+EHYGCMVDLLGRAGLLDEAHE+IKSMP
Sbjct: 534 IGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMP 593

Query: 541 LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG 600
           +RPN+ V+G+ LAA KLHKN  +GE AA Q L +EP   GYNVLMSNIYA ANRW DVA 
Sbjct: 594 MRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAY 653

Query: 601 VRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
           +RR MK+  + KEPG SS+EVNGL+H+FI G
Sbjct: 654 IRRAMKDEGIVKEPGVSSIEVNGLLHEFIMG 684

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/629 (56%), Positives = 454/629 (72%), Gaps = 25/629 (3%)

Query: 8   LNLEQTRQCHAHIIKTHF----KFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMR 63
           LNL+QT Q HAH IKT F     F   +   P   YN L++SY  N+ P ++ N Y  MR
Sbjct: 20  LNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMR 79

Query: 64  KN-GSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSL 122
            N  + +DNF +P++LKACAQ     LG+E+HGFA KNG   D +V NAL+ MY +CG L
Sbjct: 80  SNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCL 139

Query: 123 VSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLF 182
           VSAR +FD+MP RDVVSW+TM+  Y R     EAL ++REM+F+ ++ S VA+IS++++F
Sbjct: 140 VSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVF 199

Query: 183 ADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVS 242
            ++ D+  G+A+H  +VRN  DEK+ V++ TALIDMY K G LA A++LF+RL++ SVVS
Sbjct: 200 GNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVS 259

Query: 243 WTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYIL 302
           WTVMI+G IR   ++EG + F  M+EE +FP+EIT+LSLI ECGFVG L LGKW HAY+L
Sbjct: 260 WTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLL 319

Query: 303 RNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFE 362
           RNGF  SLA+  AL+DMYGKC ++  AR LF+G+K KDV IW+ +ISAYA   C+D+ F 
Sbjct: 320 RNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFN 379

Query: 363 LFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA 422
           LF+ M  + V+PN VTMV LLSLC EAGAL++GKW H YI + GLEVDVIL+TAL++MYA
Sbjct: 380 LFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYA 439

Query: 423 KCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIG 482
           KCGDV  A  LF+EA+ RDI MWN MMAG+ MHGCG+EAL  F +ME  GV+PN ITF+ 
Sbjct: 440 KCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVS 499

Query: 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR 542
           + +ACSH+GL                    +EHYGC+VDLLGRAG LDEAH +I++MP+R
Sbjct: 500 IFHACSHSGL--------------------MEHYGCLVDLLGRAGHLDEAHNIIENMPMR 539

Query: 543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602
           PN I+WGALLAA KLHKN ++GE+AA +ILE++PQN GY+VL SNIYA A RWNDV  VR
Sbjct: 540 PNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVR 599

Query: 603 RVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
             M    +KKEPG S +EV+G VH F  G
Sbjct: 600 EAMSHSGMKKEPGLSWIEVSGSVHHFKSG 628

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/501 (62%), Positives = 380/501 (75%), Gaps = 24/501 (4%)

Query: 153 PEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIA 212
           P  AL     MR +DI      + S++   + ++   +GK IH   V+N       V + 
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSD--VFVV 147

Query: 213 TALIDMYSKCGNLAYAKQLFNRLN----------------------QNSVVSWTVMISGY 250
            AL+ MYS+CG+L  A+ LF++++                      Q S+VSWT MI+GY
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 251 IRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSL 310
           IRCN++ EG RLF  MIEENVFP++IT+LSLII CGFVG +QLGK LHAYILRNGF  SL
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 311 AMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS 370
           A+A ALVDMYGKC EIRSAR +FD MK+KDVM W A+ISAYAQA+CID AF+LF+ M+ +
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGA 430
            VRPNE+TMV LLSLC   GAL+MGKW H YI+KQG+EVDVILKTAL+DMYAKCGD++GA
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 431 YRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490
            RLFSEAI RDIC WN MMAGYGMHG GE+AL  F +ME  GVKPN ITFIG L+ACSHA
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA 550
           GLV EGK +F+KM+H  GLVPK+EHYGCMVDLLGRAGLLDEA++MI+SMP+ PN+ +WGA
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610
           +LAA K+HKN +MGE+AA ++L +EPQN GY VLMSNIYA ANRWNDVAG+R+ +K+  +
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567

Query: 611 KKEPGFSSVEVNGLVHKFIRG 631
           KKEPG SS+EVNGLVH F  G
Sbjct: 568 KKEPGMSSIEVNGLVHDFKMG 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/526 (52%), Positives = 354/526 (67%), Gaps = 35/526 (6%)

Query: 139 SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACV 198
            W+ +I  Y +   P  AL V  ++R MD         S++     V+   LGK IH  V
Sbjct: 91  QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 199 VRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINE 258
           ++   D    V +  AL+ MY +C  + YA+ +F+++ +  VVSW+ MI    R  E + 
Sbjct: 151 LKKGLDRD--VFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGF--EFSLAMANAL 316
            + L  EM    V PSE+ ++S++        +++GK +HAY++RN       +    AL
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 268

Query: 317 VDMYGKC-------------------------------REIRSARTLFDGMKSKDVMIWN 345
           +DMY KC                                 +  AR LFD  +++DVMIW 
Sbjct: 269 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWT 328

Query: 346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ 405
           A++SAYAQA+CID+AF LF  M+ S VRP +VT+V LLSLC  AGAL++GKW+H+YI+K+
Sbjct: 329 AMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE 388

Query: 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFF 465
            +EVD IL TALVDMYAKCGD+N A RLF EAI RDICMWNA++ G+ MHG GEEAL  F
Sbjct: 389 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 448

Query: 466 VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525
            +MER GVKPN ITFIGLL+ACSHAGLVTEGK +F+KMVH  GLVP+IEHYGCMVDLLGR
Sbjct: 449 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 508

Query: 526 AGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585
           AGLLDEAHEMIKSMP++PN IVWGAL+AA +LHKNP +GE+AATQ+LEIEP+N GYNVLM
Sbjct: 509 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLM 568

Query: 586 SNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
           SNIYA ANRW+D AGVR+ MK + +KKEPG S +EVNG VH+F+ G
Sbjct: 569 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 614

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/629 (40%), Positives = 377/629 (59%), Gaps = 4/629 (0%)

Query: 10  LEQTRQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEV 69
           ++ TR+  A   +T  +F+ T+I N    +   +  Y+KN   + AL +Y  M++ G   
Sbjct: 61  VKTTREVSACANQT--QFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINP 118

Query: 70  DNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLF 129
           D     +++KAC        G+++H   I  G + D  V  AL  MY++CGSL +AR +F
Sbjct: 119 DKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVF 178

Query: 130 DEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVD 189
           D MP RDVVSW+ +I GY + G P EAL +  EM+   I+P+   ++S++ + A +  ++
Sbjct: 179 DRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALE 238

Query: 190 LGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISG 249
            GK IH   +R+  +    V +   L++MY+KCGN+  A +LF R+    V SW  +I G
Sbjct: 239 QGKQIHCYAIRSGIESD--VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGG 296

Query: 250 YIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFS 309
           Y   ++ +E +  F  M    + P+ IT++S++  C  +  L+ G+ +H Y +R+GFE +
Sbjct: 297 YSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESN 356

Query: 310 LAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKV 369
             + NALV+MY KC  + SA  LF+ M  K+V+ WNA+IS Y+Q     +A  LFI M+ 
Sbjct: 357 DVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQA 416

Query: 370 SKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG 429
             ++P+   +V +L  C    ALE GK +H Y  + G E +V++ T LVD+YAKCG+VN 
Sbjct: 417 QGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNT 476

Query: 430 AYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH 489
           A +LF     +D+  W  M+  YG+HG GE+AL  F  M+ +G K + I F  +L ACSH
Sbjct: 477 AQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSH 536

Query: 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG 549
           AGLV +G   F  M    GL PK+EHY C+VDLLGRAG LDEA+ +IK+M L P+  VWG
Sbjct: 537 AGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWG 596

Query: 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609
           ALL A ++H N  +GE AA  + E++P N GY VL+SNIYA A RW DVA +R++MKE  
Sbjct: 597 ALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKG 656

Query: 610 VKKEPGFSSVEVNGLVHKFIRGGMVNWKS 638
           VKK+PG S V V+  V  F+ G   + +S
Sbjct: 657 VKKQPGCSVVAVHRDVQTFLVGDRTHPQS 685

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa] gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/663 (36%), Positives = 378/663 (57%), Gaps = 70/663 (10%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           +N+L+ + +K   P   L  Y  M   G  +D  T   ++ AC +     LG E+HG  +
Sbjct: 101 WNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRIL 160

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
           K G   +  ++N L+ +YS+CG L     LF++M +RDV+SW+TMI  Y   G+  EAL+
Sbjct: 161 KCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALD 220

Query: 159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGV--AIATALI 216
           +  EM    + P E+ M+S+VS  A + D+++GK +H  +V    D KL +  ++   L+
Sbjct: 221 LFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV----DNKLWIRGSLLNCLV 276

Query: 217 DMYSKCGNLA---------------------------------YAKQLFNRLNQNSVVSW 243
           DMYSKCG +                                   A+QLF+++N+ S+VSW
Sbjct: 277 DMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSW 336

Query: 244 TVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR 303
           T M+SGY++     E + LF +M  ENV P E+ +++++  C  +    LG+ +HA+I+ 
Sbjct: 337 TTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT 396

Query: 304 NGFEFSLAMANALVDMYGKCRE-------------------------------IRSARTL 332
            G      + NAL+D+Y KC +                               +  AR  
Sbjct: 397 YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDF 456

Query: 333 FDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392
           F+ +  KD++ WN +++AY +    +++FE+F  M+ S V+P++ T++ LLS C + GAL
Sbjct: 457 FNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGAL 516

Query: 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGY 452
             G W++ YIEK  + +D +L TAL+DMY KCG V  AY +F++ I +++ +W AMMA Y
Sbjct: 517 NHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAY 576

Query: 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512
            M G   EA+  +++ME  GVKP+ +TFI LL ACSH GLV EG   F+K+     ++P 
Sbjct: 577 AMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPT 636

Query: 513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572
           I HYGCMVDLLGR G L+E  + I+ MP+ P++ +W +L+ A + H N  + E A  Q++
Sbjct: 637 IHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLI 696

Query: 573 EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGG 632
           EI+P N G +VL+SNIYA A RW+DV+ VR  + E  V K+PGF+ +E NG+VH+F+   
Sbjct: 697 EIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASN 756

Query: 633 MVN 635
           +V+
Sbjct: 757 LVS 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/634 (38%), Positives = 378/634 (59%), Gaps = 16/634 (2%)

Query: 19  HIIKTHFKFSYTNIINPLTR-YNSLVTSYIKNNKPSSA--LNIYAFMRKNGSEVDNFTIP 75
           H+ + H  F    I +P  R YN L+ +Y  ++  ++A  L++Y  M ++    +N+T P
Sbjct: 72  HLSRAHHLFD--QIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 76  TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR 135
             LKAC+ +   H G+ IH  AI  GL  D +VS AL+ MY +C  L  A ++F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 136 DVVSWSTMIRGYHRGGLPEEALE--VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKA 193
           D+V+W+ M+ GY   G+   A+   +  +M+   +RP+   +++++ L A    +  G +
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 194 IHACVVRNC------KDEKL--GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTV 245
           +HA  +R C         KL  GV + TAL+DMY+KCG+L YA+++F+ +   + V+W+ 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 246 MISGYIRCNEINEGVRLFAEMIEENV-FPSEITILSLIIECGFVGGLQLGKWLHAYILRN 304
           +I G++ C+ + +   LF  M+ + + F S  +I S +  C  +  L++G+ LHA + ++
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELF 364
           G    L   N+L+ MY K   I  A  LFD M  KD + ++A++S Y Q    ++AF +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 365 IHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424
             M+   V P+  TMV L+  C+   AL+ G+  H  +  +GL  +  +  AL+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 425 GDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484
           G ++ + ++F+    RDI  WN M+AGYG+HG G+EA   F++M   G  P+G+TFI LL
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN 544
           +ACSH+GLV EGK  F  M HG GL P++EHY CMVDLL R G LDEA+E I+SMPLR +
Sbjct: 550 SACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRV 604
           + VW ALL A +++KN  +G+  +  I E+ P+  G  VL+SNIY+ A R+++ A VR +
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 605 MKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS 638
            K    KK PG S +E+NG +H F+ G   + +S
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQS 703

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/634 (38%), Positives = 378/634 (59%), Gaps = 16/634 (2%)

Query: 19  HIIKTHFKFSYTNIINPLTR-YNSLVTSYIKNNKPSSA--LNIYAFMRKNGSEVDNFTIP 75
           H+ + H  F    I +P  R YN L+ +Y  ++  ++A  L++Y  M ++    +N+T P
Sbjct: 72  HLSRAHHLFD--QIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 76  TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR 135
             LKAC+ +   H G+ IH  AI  GL  D +VS AL+ MY +C  L  A ++F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 136 DVVSWSTMIRGYHRGGLPEEALE--VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKA 193
           D+V+W+ M+ GY   G+   A+   +  +M+   +RP+   +++++ L A    +  G +
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 194 IHACVVRNC------KDEKL--GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTV 245
           +HA  +R C         KL  GV + TAL+DMY+KCG+L YA+++F+ +   + V+W+ 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 246 MISGYIRCNEINEGVRLFAEMIEENV-FPSEITILSLIIECGFVGGLQLGKWLHAYILRN 304
           +I G++ C+ + +   LF  M+ + + F S  +I S +  C  +  L++G+ LHA + ++
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELF 364
           G    L   N+L+ MY K   I  A  LFD M  KD + ++A++S Y Q    ++AF +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 365 IHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424
             M+   V P+  TMV L+  C+   AL+ G+  H  +  +GL  +  +  AL+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 425 GDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484
           G ++ + ++F+    RDI  WN M+AGYG+HG G+EA   F++M   G  P+G+TFI LL
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN 544
           +ACSH+GLV EGK  F  M HG GL P++EHY CMVDLL R G LDEA+E I+SMPLR +
Sbjct: 550 SACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRV 604
           + VW ALL A +++KN  +G+  +  I E+ P+  G  VL+SNIY+ A R+++ A VR +
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 605 MKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWKS 638
            K    KK PG S +E+NG +H F+ G   + +S
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQS 703

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 368/631 (58%), Gaps = 41/631 (6%)

Query: 36  LTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHG 95
           L  YN L+  Y        A+ +Y  M   G   D +T P +L AC+++L    G ++HG
Sbjct: 95  LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 96  FAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEE 155
             +K GL+GD +VSN+LI  Y+ECG +   R LFD M  R+VVSW+++I GY    L +E
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 156 ALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIAT-- 213
           A+ +  +M    + P+ V M+ ++S  A + D++LGK + + +       +LG+ ++T  
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYI------SELGMELSTIM 268

Query: 214 --ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENV 271
             AL+DMY KCG++  A+Q+F+     ++V +  ++S Y+     ++ + +  EM+++  
Sbjct: 269 VNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGP 328

Query: 272 FPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKC--RE---- 325
            P ++T+LS I  C  +G L +GK  HAY+LRNG E    ++NA++DMY KC  RE    
Sbjct: 329 RPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACK 388

Query: 326 -------------------------IRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKA 360
                                    +  A  +FD M  +D++ WN +I A  Q    ++A
Sbjct: 389 VFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEA 448

Query: 361 FELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDM 420
            ELF  M+   +  + VTMVG+ S C   GAL++ KW+ TYIEK  + VD+ L TALVDM
Sbjct: 449 IELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDM 508

Query: 421 YAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF 480
           +++CGD + A  +F     RD+  W A +    M G  E A+  F +M    VKP+ + F
Sbjct: 509 FSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVF 568

Query: 481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP 540
           + LL ACSH G V +G+ +F  M    G+ P I HYGCMVDLLGRAGLL+EA ++I+SMP
Sbjct: 569 VALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMP 628

Query: 541 LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG 600
           + PN +VWG+LLAA + HKN  +   AA ++ ++ P+  G +VL+SNIYA A +W DVA 
Sbjct: 629 IEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVAR 688

Query: 601 VRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
           VR  MKE  V+K PG SS+EV GL+H+F  G
Sbjct: 689 VRLQMKEKGVQKVPGSSSIEVQGLIHEFTSG 719

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.921	0.726	0.369	3.2e-113
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.927	0.679	0.371	7.6e-112
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.926	0.689	0.350	1.5e-106
TAIR|locus:2175653	677	AT5G39350 "AT5G39350" [Arabido	0.912	0.859	0.356	6.5e-106
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.921	0.714	0.37	1.7e-105
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.918	0.676	0.364	3.2e-104
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.920	0.741	0.340	5.4e-102
TAIR|locus:2131631	804	AT4G35130 "AT4G35130" [Arabido	0.921	0.731	0.356	6.9e-102
TAIR|locus:2122551	834	AT4G39530 [Arabidopsis thalian	0.920	0.703	0.337	6.2e-101
TAIR|locus:2083961	768	AT3G53360 "AT3G53360" [Arabido	0.924	0.768	0.354	1.2e-100

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 220/596 (36%), Positives = 359/596 (60%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSE--VDNFTIPTILKACAQVLMTHLGKEIHGF 96
             Y++++  + K +    AL  +  MR +  E  V NFT   +LK C       +GKEIHG 
Sbjct:   103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY--LLKVCGDEAELRVGKEIHGL 160

Query:    97 AIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEA 156
              +K+G   D +    L  MY++C  +  AR +FD MP RD+VSW+T++ GY + G+   A
Sbjct:   161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220

Query:   157 LEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALI 216
             LE+++ M   +++PS + ++S++   + +  + +GK IH   +R+  D    V I+TAL+
Sbjct:   221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL--VNISTALV 278

Query:   217 DMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEI 276
             DMY+KCG+L  A+QLF+ + + +VVSW  MI  Y++     E + +F +M++E V P+++
Sbjct:   279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338

Query:   277 TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGM 336
             +++  +  C  +G L+ G+++H   +  G + ++++ N+L+ MY KC+E+ +A ++F  +
Sbjct:   339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398

Query:   337 KSKDVMIWNAVISAYAQ-AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMG 395
             +S+ ++ WNA+I  +AQ    ID A   F  M+   V+P+  T V +++   E       
Sbjct:   399 QSRTLVSWNAMILGFAQNGRPID-ALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457

Query:   396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH 455
             KW+H  + +  L+ +V + TALVDMYAKCG +  A  +F     R +  WNAM+ GYG H
Sbjct:   458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query:   456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515
             G G+ AL  F +M++  +KPNG+TF+ +++ACSH+GLV  G   F  M     +   ++H
Sbjct:   518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577

Query:   516 YGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575
             YG MVDLLGRAG L+EA + I  MP++P + V+GA+L A ++HKN +  E AA ++ E+ 
Sbjct:   578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637

Query:   576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
             P + GY+VL++NIY  A+ W  V  VR  M    ++K PG S VE+   VH F  G
Sbjct:   638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSG 693

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 223/601 (37%), Positives = 356/601 (59%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
             +N L+    K+   S ++ ++  M  +G E+D++T   + K+ + +   H G+++HGF +
Sbjct:   163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query:    99 KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
             K+G      V N+L+  Y +   + SAR +FDEM  RDV+SW+++I GY   GL E+ L 
Sbjct:   223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query:   159 VMREMRFMDIRPSEVAMISMVSLFADVAD---VDLGKAIHACVVRNCKDEKLGVAIATAL 215
             V  +M    I   E+ + ++VS+FA  AD   + LG+A+H+  V+ C   +        L
Sbjct:   283 VFVQMLVSGI---EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE--DRFCNTL 337

Query:   216 IDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275
             +DMYSKCG+L  AK +F  ++  SVVS+T MI+GY R     E V+LF EM EE + P  
Sbjct:   338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397

Query:   276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDG 335
              T+ +++  C     L  GK +H +I  N   F + ++NAL+DMY KC  ++ A  +F  
Sbjct:   398 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 457

Query:   336 MKSKDVMIWNAVISAYAQAHCIDKAFELF-IHMKVSKVRPNEVTMVGLLSLCTEAGALEM 394
             M+ KD++ WN +I  Y++    ++A  LF + ++  +  P+E T+  +L  C    A + 
Sbjct:   458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query:   395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM 454
             G+ +H YI + G   D  +  +LVDMYAKCG +  A+ LF +   +D+  W  M+AGYGM
Sbjct:   518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query:   455 HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE 514
             HG G+EA+  F  M ++G++ + I+F+ LL ACSH+GLV EG   F+ M H   + P +E
Sbjct:   578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query:   515 HYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEI 574
             HY C+VD+L R G L +A+  I++MP+ P+  +WGALL   ++H +  + E  A ++ E+
Sbjct:   638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697

Query:   575 EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMV 634
             EP+N GY VLM+NIYA A +W  V  +R+ + +  ++K PG S +E+ G V+ F+ G   
Sbjct:   698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757

Query:   635 N 635
             N
Sbjct:   758 N 758

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
 Identities = 208/594 (35%), Positives = 346/594 (58%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
             +N ++  Y K     S +  ++ MR +    +  T   +L  CA  L+  LG ++HG  +
Sbjct:   207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266

Query:    99 KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
              +G+D +  + N+L+ MYS+CG    A  LF  M   D V+W+ MI GY + GL EE+L 
Sbjct:   267 VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLT 326

Query:   159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218
                EM    + P  +   S++   +   +++  K IH  ++R+     L + + +ALID 
Sbjct:   327 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH--SISLDIFLTSALIDA 384

Query:   219 YSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI 278
             Y KC  ++ A+ +F++ N   VV +T MISGY+      + + +F  +++  + P+EIT+
Sbjct:   385 YFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITL 444

Query:   279 LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS 338
             +S++   G +  L+LG+ LH +I++ GF+    +  A++DMY KC  +  A  +F+ +  
Sbjct:   445 VSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSK 504

Query:   339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398
             +D++ WN++I+  AQ+     A ++F  M VS +  + V++   LS C    +   GK +
Sbjct:   505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564

Query:   399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCG 458
             H ++ K  L  DV  ++ L+DMYAKCG++  A  +F     ++I  WN+++A  G HG  
Sbjct:   565 HGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKL 624

Query:   459 EEALIFFVDM-ERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG 517
             +++L  F +M E+SG++P+ ITF+ ++++C H G V EG   F  M    G+ P+ EHY 
Sbjct:   625 KDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYA 684

Query:   518 CMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577
             C+VDL GRAG L EA+E +KSMP  P+  VWG LL A +LHKN  + E+A++++++++P 
Sbjct:   685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPS 744

Query:   578 NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
             N GY VL+SN +A A  W  V  VR +MKE  V+K PG+S +E+N   H F+ G
Sbjct:   745 NSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSG 798

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 212/594 (35%), Positives = 336/594 (56%)

Query:    36 LTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEV--DNFTIPTILKACAQVLMTHLGKEI 93
             L  YN ++  Y++      A++++  M   G +   D +T P + KA  ++    LG  +
Sbjct:    80 LLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVV 139

Query:    94 HGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLP 153
             HG  +++    D YV NAL+ MY   G +  AR +FD M NRDV+SW+TMI GY+R G  
Sbjct:   140 HGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYM 199

Query:   154 EEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLG--VAI 211
              +AL +   M    +      ++SM+ +   + D+++G+ +H  V    ++++LG  + +
Sbjct:   200 NDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV----EEKRLGDKIEV 255

Query:   212 ATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENV 271
               AL++MY KCG +  A+ +F+R+ +  V++WT MI+GY    ++   + L   M  E V
Sbjct:   256 KNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGV 315

Query:   272 FPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSART 331
              P+ +TI SL+  CG    +  GK LH + +R      + +  +L+ MY KC+ +     
Sbjct:   316 RPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFR 375

Query:   332 LFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA 391
             +F G        W+A+I+   Q   +  A  LF  M+   V PN  T+  LL        
Sbjct:   376 VFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALAD 435

Query:   392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS----EAIYRDICMWNA 447
             L     +H Y+ K G    +   T LV +Y+KCG +  A+++F+    +   +D+ +W A
Sbjct:   436 LRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGA 495

Query:   448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507
             +++GYGMHG G  AL  F++M RSGV PN ITF   LNACSH+GLV EG ++F  M+   
Sbjct:   496 LISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHY 555

Query:   508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIA 567
               + +  HY C+VDLLGRAG LDEA+ +I ++P  P   VWGALLAA   H+N  +GE+A
Sbjct:   556 KTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMA 615

Query:   568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEV 621
             A ++ E+EP+N G  VL++NIYA   RW D+  VR +M+ + ++K+PG S++E+
Sbjct:   616 ANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEI 669

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 222/600 (37%), Positives = 355/600 (59%)

Query:    39 YNSLVTSYIKNNKPSSALNIYA-FMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFA 97
             +N +++ Y +    S  +  ++ FM  +G   D  T P++LKAC  V+    G +IH  A
Sbjct:   120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLA 176

Query:    98 IKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157
             +K G   D YV+ +LI +YS   ++ +AR LFDEMP RD+ SW+ MI GY + G  +EAL
Sbjct:   177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query:   158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217
              +   +R MD     V ++S++S   +  D + G  IH+  +++  + +L V+    LID
Sbjct:   237 TLSNGLRAMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS--NKLID 290

Query:   218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEIT 277
             +Y++ G L   +++F+R+    ++SW  +I  Y    +    + LF EM    + P  +T
Sbjct:   291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350

Query:   278 ILSLIIECGFVGGLQLGKWLHAYILRNG-FEFSLAMANALVDMYGKCREIRSARTLFDGM 336
             ++SL      +G ++  + +  + LR G F   + + NA+V MY K   + SAR +F+ +
Sbjct:   351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query:   337 KSKDVMIWNAVISAYAQAHCIDKAFELF-IHMKVSKVRPNEVTMVGLLSLCTEAGALEMG 395
              + DV+ WN +IS YAQ     +A E++ I  +  ++  N+ T V +L  C++AGAL  G
Sbjct:   411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470

Query:   396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH 455
               LH  + K GL +DV + T+L DMY KCG +  A  LF +    +   WN ++A +G H
Sbjct:   471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530

Query:   456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515
             G GE+A++ F +M   GVKP+ ITF+ LL+ACSH+GLV EG+  F+ M    G+ P ++H
Sbjct:   531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590

Query:   516 YGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575
             YGCMVD+ GRAG L+ A + IKSM L+P+  +WGALL+A ++H N  +G+IA+  + E+E
Sbjct:   591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650

Query:   576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVN 635
             P++ GY+VL+SN+YA A +W  V  +R +     ++K PG+SS+EV+  V  F  G   +
Sbjct:   651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTH 710

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 218/598 (36%), Positives = 341/598 (57%)

Query:    36 LTRYNSLVTSYIKNNKPSSALNIYAFMR-KNGSEVDNFTIPTILKACAQVLMTHLGKEIH 94
             L  +N LV  Y K      A+ +Y  M    G + D +T P +L+ C  +     GKE+H
Sbjct:   160 LFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVH 219

Query:    95 GFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPE 154
                ++ G + D  V NALI MY +CG + SAR LFD MP RD++SW+ MI GY   G+  
Sbjct:   220 VHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCH 279

Query:   155 EALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATA 214
             E LE+   MR + + P  + + S++S    + D  LG+ IHA V+       + +++  +
Sbjct:   280 EGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITT--GFAVDISVCNS 337

Query:   215 LIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEI-NEGVRLFAEMIEENVFP 273
             L  MY   G+   A++LF+R+ +  +VSWT MISGY   N + ++ +  +  M +++V P
Sbjct:   338 LTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY-EYNFLPDKAIDTYRMMDQDSVKP 396

Query:   274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF 333
              EIT+ +++  C  +G L  G  LH   ++      + +AN L++MY KC+ I  A  +F
Sbjct:   397 DEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIF 456

Query:   334 DGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKV--RPNEVTMVGLLSLCTEAGA 391
               +  K+V+ W ++I   A     ++ FE  I ++  K+  +PN +T+   L+ C   GA
Sbjct:   457 HNIPRKNVISWTSII---AGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGA 513

Query:   392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAG 451
             L  GK +H ++ + G+ +D  L  AL+DMY +CG +N A+  F+    +D+  WN ++ G
Sbjct:   514 LMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTG 572

Query:   452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP 511
             Y   G G   +  F  M +S V+P+ ITFI LL  CS + +V +G   F KM    G+ P
Sbjct:   573 YSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTP 631

Query:   512 KIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQI 571
              ++HY C+VDLLGRAG L EAH+ I+ MP+ P+  VWGALL A ++H    +GE++A  I
Sbjct:   632 NLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHI 691

Query:   572 LEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFI 629
              E++ ++ GY +L+ N+YA   +W +VA VRR+MKE  +  + G S VEV G VH F+
Sbjct:   692 FELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFL 749

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 203/596 (34%), Positives = 328/596 (55%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGS-EVDNFTIPTILKACAQVLMTHLGKEIHGFA 97
             +N L+  +  N  P S+L+++A +RK+   + ++ T    + A +       G+ IHG A
Sbjct:    86 FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQA 145

Query:    98 IKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157
             + +G D +  + + +++MY +   +  AR +FD MP +D + W+TMI GY +  +  E++
Sbjct:   146 VVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query:   158 EVMREM-RFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRN-CKDEKLGVAIATAL 215
             +V R++      R     ++ ++   A++ ++ LG  IH+   +  C        + T  
Sbjct:   206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY---VLTGF 262

Query:   216 IDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275
             I +YSKCG +     LF    +  +V++  MI GY    E    + LF E++        
Sbjct:   263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322

Query:   276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDG 335
              T++SL+   G    L L   +H Y L++ F    +++ AL  +Y K  EI SAR LFD 
Sbjct:   323 STLVSLVPVSGH---LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDE 379

Query:   336 MKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMG 395
                K +  WNA+IS Y Q    + A  LF  M+ S+  PN VT+  +LS C + GAL +G
Sbjct:   380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG 439

Query:   396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH 455
             KW+H  +     E  + + TAL+ MYAKCG +  A RLF     ++   WN M++GYG+H
Sbjct:   440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLH 499

Query:   456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515
             G G+EAL  F +M  SG+ P  +TF+ +L ACSHAGLV EG  +F+ M+H  G  P ++H
Sbjct:   500 GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559

Query:   516 YGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575
             Y CMVD+LGRAG L  A + I++M + P   VW  LL A ++HK+ ++    + ++ E++
Sbjct:   560 YACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD 619

Query:   576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
             P N GY+VL+SNI++    +   A VR+  K+ ++ K PG++ +E+    H F  G
Sbjct:   620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSG 675

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2131631 AT4G35130 "AT4G35130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 212/594 (35%), Positives = 331/594 (55%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
             +N ++  +        A+  Y+ M   G + D FT P ++K+ A +     GK+IH   I
Sbjct:    98 WNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVI 157

Query:    99 KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
             K G   D YV N+LI +Y + G    A  +F+EMP RD+VSW++MI GY   G    +L 
Sbjct:   158 KLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLM 217

Query:   159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218
             + +EM     +P   + +S +   + V    +GK IH   VR+ + E   V + T+++DM
Sbjct:   218 LFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRS-RIETGDVMVMTSILDM 276

Query:   219 YSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEEN-VFPSEIT 277
             YSK G ++YA+++FN + Q ++V+W VMI  Y R   + +    F +M E+N + P  IT
Sbjct:   277 YSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVIT 336

Query:   278 ILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK 337
              ++L+     + G    + +H Y +R GF   + +  AL+DMYG+C +++SA  +FD M 
Sbjct:   337 SINLLPASAILEG----RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA 392

Query:   338 SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKW 397
              K+V+ WN++I+AY Q      A ELF  +  S + P+  T+  +L    E+ +L  G+ 
Sbjct:   393 EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGRE 452

Query:   398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGC 457
             +H YI K     + I+  +LV MYA CGD+  A + F+  + +D+  WN+++  Y +HG 
Sbjct:   453 IHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGF 512

Query:   458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG 517
             G  ++  F +M  S V PN  TF  LL ACS +G+V EG   F+ M    G+ P IEHYG
Sbjct:   513 GRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYG 572

Query:   518 CMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577
             CM+DL+GR G    A   ++ MP  P   +WG+LL AS+ HK+ ++ E AA QI ++E  
Sbjct:   573 CMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHD 632

Query:   578 NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
             N G  VL+ N+YA A RW DV  ++ +M+   + +    S+VE  G  H F  G
Sbjct:   633 NTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNG 686

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 201/595 (33%), Positives = 344/595 (57%)

Query:    39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
             + ++++  +K  +   +L ++  + ++    D + + T+L AC+ +     GK+IH   +
Sbjct:   217 WTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276

Query:    99 KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
             + GL+ DA + N LI  Y +CG +++A  LF+ MPN++++SW+T++ GY +  L +EA+E
Sbjct:   277 RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAME 336

Query:   159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR-NCKDEKLGVAIATALID 217
             +   M    ++P   A  S+++  A +  +  G  +HA  ++ N  ++     +  +LID
Sbjct:   337 LFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSY---VTNSLID 393

Query:   218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN---EINEGVRLFAEMIEENVFPS 274
             MY+KC  L  A+++F+      VV +  MI GY R     E++E + +F +M    + PS
Sbjct:   394 MYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPS 453

Query:   275 EITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFD 334
              +T +SL+     +  L L K +H  + + G    +   +AL+D+Y  C  ++ +R +FD
Sbjct:   454 LLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513

Query:   335 GMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEM 394
              MK KD++IWN++ + Y Q    ++A  LF+ +++S+ RP+E T   +++      ++++
Sbjct:   514 EMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573

Query:   395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM 454
             G+  H  + K+GLE +  +  AL+DMYAKCG    A++ F  A  RD+  WN++++ Y  
Sbjct:   574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633

Query:   455 HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE 514
             HG G++AL     M   G++PN ITF+G+L+ACSHAGLV +G   F+ M+   G+ P+ E
Sbjct:   634 HGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETE 692

Query:   515 HYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEI 574
             HY CMV LLGRAG L++A E+I+ MP +P  IVW +LL+      N  + E AA   +  
Sbjct:   693 HYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILS 752

Query:   575 EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFI 629
             +P++ G   ++SNIYA    W +   VR  MK   V KEPG S + +N  VH F+
Sbjct:   753 DPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFL 807

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 211/596 (35%), Positives = 325/596 (54%)

Query:    36 LTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHG 95
             L  Y S++T Y +N + + A+ +Y  M +     D F   +I+KACA      LGK++H 
Sbjct:   133 LVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHA 192

Query:    96 FAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEE 155
               IK          NALI MY     +  A  +F  +P +D++SWS++I G+ + G   E
Sbjct:   193 QVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFE 252

Query:   156 ALEVMREM-RFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIA-T 213
             AL  ++EM  F    P+E    S +   + +   D G  IH   +   K E  G AIA  
Sbjct:   253 ALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCI---KSELAGNAIAGC 309

Query:   214 ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP 273
             +L DMY++CG L  A+++F+++ +    SW V+I+G       +E V +F++M      P
Sbjct:   310 SLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIP 369

Query:   274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF 333
               I++ SL+        L  G  +H+YI++ GF   L + N+L+ MY  C ++     LF
Sbjct:   370 DAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLF 429

Query:   334 DGMKSK-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392
             +  ++  D + WN +++A  Q     +   LF  M VS+  P+ +TM  LL  C E  +L
Sbjct:   430 EDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489

Query:   393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGY 452
             ++G  +H Y  K GL  +  +K  L+DMYAKCG +  A R+F     RD+  W+ ++ GY
Sbjct:   490 KLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGY 549

Query:   453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512
                G GEEALI F +M+ +G++PN +TF+G+L ACSH GLV EG  ++  M    G+ P 
Sbjct:   550 AQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPT 609

Query:   513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572
              EH  C+VDLL RAG L+EA   I  M L P+++VW  LL+A K   N  + + AA  IL
Sbjct:   610 KEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENIL 669

Query:   573 EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKF 628
             +I+P N   +VL+ +++A +  W + A +R  MK+  VKK PG S +E+   +H F
Sbjct:   670 KIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIF 725

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002188001 SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (801 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	638
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-159
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-97
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-83
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-63
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-58
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-18
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	7e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  478 bits (1233), Expect = e-159
 Identities = 227/593 (38%), Positives = 342/593 (57%), Gaps = 4/593 (0%)

Query: 39  YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI 98
           +N LV  Y K      AL +Y  M   G   D +T P +L+ C  +     G+E+H   +
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214

Query: 99  KNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE 158
           + G + D  V NALI MY +CG +VSAR +FD MP RD +SW+ MI GY   G   E LE
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274

Query: 159 VMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218
           +   MR + + P  + + S++S    + D  LG+ +H  VV+      + V++  +LI M
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQM 332

Query: 219 YSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI 278
           Y   G+   A+++F+R+     VSWT MISGY +    ++ +  +A M ++NV P EITI
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392

Query: 279 LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS 338
            S++  C  +G L +G  LH    R G    + +ANAL++MY KC+ I  A  +F  +  
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452

Query: 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398
           KDV+ W ++I+     +   +A   F  M +  ++PN VT++  LS C   GAL  GK +
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511

Query: 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCG 458
           H ++ + G+  D  L  AL+D+Y +CG +N A+  F+ +  +D+  WN ++ GY  HG G
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKG 570

Query: 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC 518
             A+  F  M  SGV P+ +TFI LL ACS +G+VT+G   F  M     + P ++HY C
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630

Query: 519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578
           +VDLLGRAG L EA+  I  MP+ P+  VWGALL A ++H++  +GE+AA  I E++P +
Sbjct: 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690

Query: 579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
            GY +L+ N+YA A +W++VA VR+ M+E  +  +PG S VEV G VH F+  
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  312 bits (801), Expect = 4e-97
 Identities = 137/414 (33%), Positives = 226/414 (54%)

Query: 218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEIT 277
           M+ KCG L  A++LF+ + + ++ SW  +I G +      E   LF EM E+       T
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226

Query: 278 ILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK 337
            + ++     +G  + G+ LH  +L+ G      ++ AL+DMY KC +I  AR +FDGM 
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286

Query: 338 SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKW 397
            K  + WN++++ YA     ++A  L+  M+ S V  ++ T   ++ + +    LE  K 
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGC 457
            H  + + G  +D++  TALVD+Y+K G +  A  +F     +++  WNA++AGYG HG 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406

Query: 458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG 517
           G +A+  F  M   GV PN +TF+ +L+AC ++GL  +G  +F  M     + P+  HY 
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466

Query: 518 CMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577
           CM++LLGR GLLDEA+ MI+  P +P + +W ALL A ++HKN  +G +AA ++  + P+
Sbjct: 467 CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526

Query: 578 NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRG 631
                V++ N+Y  + R  + A V   +K   +   P  + +EV    H F  G
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  280 bits (718), Expect = 1e-83
 Identities = 147/460 (31%), Positives = 244/460 (53%), Gaps = 3/460 (0%)

Query: 40  NSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIK 99
           NS + +   + +   AL +   M++    VD      + + C        G  +   A+ 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 100 NGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEV 159
           +       + NA++ M+   G LV A Y+F +MP RD+ SW+ ++ GY + G  +EAL +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 160 MREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMY 219
              M +  +RP       ++     + D+  G+ +HA VVR     +L V +  ALI MY
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR--FGFELDVDVVNALITMY 232

Query: 220 SKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITIL 279
            KCG++  A+ +F+R+ +   +SW  MISGY    E  EG+ LF  M E +V P  +TI 
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

Query: 280 SLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK 339
           S+I  C  +G  +LG+ +H Y+++ GF   +++ N+L+ MY        A  +F  M++K
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

Query: 340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLH 399
           D + W A+IS Y +    DKA E +  M+   V P+E+T+  +LS C   G L++G  LH
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412

Query: 400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGE 459
              E++GL   V++  AL++MY+KC  ++ A  +F     +D+  W +++AG  ++    
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472

Query: 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV 499
           EALIFF  M  + +KPN +T I  L+AC+  G +  GK +
Sbjct: 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI 511

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  220 bits (562), Expect = 8e-63
 Identities = 134/499 (26%), Positives = 230/499 (46%), Gaps = 21/499 (4%)

Query: 24  HFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGS-EVDNFTIPTILKACA 82
             +   T I        S +   +   +   AL ++  +       +   T   +++AC 
Sbjct: 75  DARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI 134

Query: 83  QVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWST 142
            +      K ++     +G + D Y+ N ++ M+ +CG L+ AR LFDEMP R++ SW T
Sbjct: 135 ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT 194

Query: 143 MIRGYHRGGLPEEALEVMREM--RFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR 200
           +I G    G   EA  + REM     D  P    +  M+   A +     G+ +H CV+ 
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV--MLRASAGLGSARAGQQLHCCVL- 251

Query: 201 NCKDEKLGVA----IATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEI 256
                K GV     ++ ALIDMYSKCG++  A+ +F+ + + + V+W  M++GY      
Sbjct: 252 -----KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

Query: 257 NEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANAL 316
            E + L+ EM +  V   + T   +I     +  L+  K  HA ++R GF   +    AL
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

Query: 317 VDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE 376
           VD+Y K   +  AR +FD M  K+++ WNA+I+ Y       KA E+F  M    V PN 
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426

Query: 377 VTMVGLLSLCTEAGALEMGKWLHTYI-EKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS 435
           VT + +LS C  +G  E G  +   + E   ++   +    ++++  + G ++ AY +  
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486

Query: 436 EAIYR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLV 493
            A ++  + MW A++    +H   E  L      +  G+ P  +  ++ LLN  + +G  
Sbjct: 487 RAPFKPTVNMWAALLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544

Query: 494 TEGKSVFDKM-VHGLGLVP 511
            E   V + +   GL + P
Sbjct: 545 AEAAKVVETLKRKGLSMHP 563

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  210 bits (536), Expect = 2e-58
 Identities = 116/418 (27%), Positives = 221/418 (52%), Gaps = 4/418 (0%)

Query: 141 STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR 200
           ++ +R     G  E+AL+++  M+ + +   E A +++  L      V+ G  + +  + 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 201 NCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGV 260
           +     LGV +  A++ M+ + G L +A  +F ++ +  + SW V++ GY +    +E +
Sbjct: 115 SHP--SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172

Query: 261 RLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMY 320
            L+  M+   V P   T   ++  CG +  L  G+ +HA+++R GFE  + + NAL+ MY
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

Query: 321 GKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV 380
            KC ++ SAR +FD M  +D + WNA+IS Y +     +  ELF  M+   V P+ +T+ 
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

Query: 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR 440
            ++S C   G   +G+ +H Y+ K G  VDV +  +L+ MY   G    A ++FS    +
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

Query: 441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF 500
           D   W AM++GY  +G  ++AL  +  ME+  V P+ IT   +L+AC+  G +  G  + 
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL- 411

Query: 501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLH 558
            ++    GL+  +     ++++  +   +D+A E+  ++P   ++I W +++A  +L+
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLN 468

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 87.2 bits (216), Expect = 9e-18
 Identities = 86/367 (23%), Positives = 157/367 (42%), Gaps = 74/367 (20%)

Query: 243 WTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYIL 302
           +T +IS   +  +++    +F EM+   V  +  T  +LI  C   G  Q+ K   AY +
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGI 532

Query: 303 RNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV----MIWNAVISAYAQAHCID 358
                                            M+SK+V    +++NA+ISA  Q+  +D
Sbjct: 533 ---------------------------------MRSKNVKPDRVVFNALISACGQSGAVD 559

Query: 359 KAFELFIHMK--VSKVRPNEVTMVGLLSLCTEAG----ALEMGKWLHTYIEKQGLEVDVI 412
           +AF++   MK     + P+ +T+  L+  C  AG    A E+ + +H Y  K   EV   
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--- 616

Query: 413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDI---------CMWNAMMAGYGMHGCGEEALI 463
             T  V+  ++ GD + A      +IY D+           ++A++   G  G  ++A  
Sbjct: 617 -YTIAVNSCSQKGDWDFAL-----SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

Query: 464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523
              D  + G+K   +++  L+ ACS+A    +   +++  +  + L P +     ++  L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITAL 729

Query: 524 GRAGLLDEAHEM---IKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILE--IEPQN 578
                L +A E+   +K + L PN I +  LL AS+   +  +G    +Q  E  I+P  
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP-- 787

Query: 579 YGYNVLM 585
              N++M
Sbjct: 788 ---NLVM 791

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.0 bits (153), Expect = 4e-10
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 81/264 (30%)

Query: 335 GMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEM 394
           G+K+ D  ++  +IS  A++  +D  FE+F  M  + V  N                   
Sbjct: 467 GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN------------------- 506

Query: 395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN---GAYR-LFSEAIYRDICMWNAMMA 450
              +HT+              AL+D  A+ G V    GAY  + S+ +  D  ++NA+++
Sbjct: 507 ---VHTF-------------GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

Query: 451 GYGMHGCGEEALIFFVDM--ERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHG-- 506
             G  G  + A     +M  E   + P+ IT   L+ AC++AG V   K V+ +M+H   
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYN 609

Query: 507 ---------------------------------LGLVPKIEHYGCMVDLLGRAGLLDEAH 533
                                             G+ P    +  +VD+ G AG LD+A 
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669

Query: 534 EMIKSMP---LRPNMIVWGALLAA 554
           E+++      ++   + + +L+ A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGA 693

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 41/284 (14%)

Query: 214 ALIDMYSKCGNLAYAKQLFNRLNQNSV----VSWTVMISGYIRCNEINEGVRLFAEMIEE 269
           ALID  ++ G +A A   +  +   +V    V +  +IS   +   ++    + AEM  E
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571

Query: 270 N--VFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIR 327
              + P  IT+ +L+  C   G +   K ++  I     + +  +    V+   +  +  
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631

Query: 328 SARTLFDGMKSKDV----MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLL 383
            A +++D MK K V    + ++A++     A  +DKAFE+    +   ++   V+   L+
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

Query: 384 SLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDIC 443
             C+ A       W      K+ LE+   +K                    S  +   + 
Sbjct: 692 GACSNAK-----NW------KKALELYEDIK--------------------SIKLRPTVS 720

Query: 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC 487
             NA++          +AL    +M+R G+ PN IT+  LL A 
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH 489
           D+  +N ++ GY   G  EEAL  F +M++ G+KPN  T+  L++    
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLS-LC 386
            DV+ +N +I  Y +   +++A +LF  MK   ++PN  T   L+  LC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 239 SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLI 282
            VV++  +I GY +  ++ E ++LF EM +  + P+  T   LI
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 70/406 (17%), Positives = 165/406 (40%), Gaps = 45/406 (11%)

Query: 27  FSYTNII-NP-LTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQV 84
           F +  +I NP L+ +N L++    +     AL +   +++ G + D     T++  CA+ 
Sbjct: 426 FRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485

Query: 85  LMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDV----VSW 140
                  E+    +  G++ + +   ALI   +  G +  A   +  M +++V    V +
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545

Query: 141 STMIRGYHRGGLPEEALEVMREMR--FMDIRPSEVAMISMVSLFADVADVDLGKAIHACV 198
           + +I    + G  + A +V+ EM+     I P  + + +++   A+   VD  K ++  +
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605

Query: 199 VRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYI----RCN 254
                + K    + T  ++  S+ G+  +A  +++ + +  V    V  S  +       
Sbjct: 606 HEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

Query: 255 EINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMAN 314
           ++++   +  +  ++ +    ++  SL+  C          W  A               
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACS-----NAKNWKKA--------------- 703

Query: 315 ALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRP 374
             +++Y   + I+   T         V   NA+I+A  + + + KA E+   MK   + P
Sbjct: 704 --LELYEDIKSIKLRPT---------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDM 420
           N +T   LL         ++G  L +  ++ G++ ++++   +  +
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 382 LLSLCTEA----GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE- 436
           L+S+C  +    GAL + + +    ++ GL+ D  L T L+   AK G V+  + +F E 
Sbjct: 443 LMSVCASSQDIDGALRVLRLV----QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

Query: 437 ---AIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLV 493
               +  ++  + A++ G    G   +A   +  M    VKP+ + F  L++AC  +G V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558

Query: 494 TEGKSVFDKM-VHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539
                V  +M      + P     G ++     AG +D A E+ + +
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.2 bits (103), Expect = 8e-06
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 136 DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEV 173
           DVV+++T+I GY + G  EEAL++  EM+   I+P+  
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 39 YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQ 83
          YN+L+  Y K  K   AL ++  M+K G + + +T   ++    +
Sbjct: 6  YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDI 168
           V+++++I GY + G  EEALE+ +EM+   +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 110 NALIQMYSECGSLVSARYLFDEMPNR----DVVSWSTMIRGYHR 149
           N LI  Y + G +  A  LF+EM  R    +V ++S +I G  +
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 136 DVVSWSTMIRGYHRGGLPEEALEVMREMR 164
           DVV+++T+I G  R G  +EA+E++ EM 
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275
           V++  +I G  +   + E + LF EM E  + P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENV 271
           V++  +ISGY +  ++ E + LF EM E+ V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGV 473
            +N++++GY   G  EEAL  F +M+  GV
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSE 172
           V+++T+I G  + G  EEALE+ +EM+   I P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE 376
           + +N +I    +A  +++A ELF  MK   + P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN 476
             +N ++ G    G  EEAL  F +M+  G++P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	638
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.79
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.69
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.64
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.53
KOG1126	638	consensus DNA-binding cell division cycle control	99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.5
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.42
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.4
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.38
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.36
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.36
KOG1129	478	consensus TPR repeat-containing protein [General f	99.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.32
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.3
PRK12370	553	invasion protein regulator; Provisional	99.29
KOG1129	478	consensus TPR repeat-containing protein [General f	99.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.27
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.27
PRK12370	553	invasion protein regulator; Provisional	99.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.26
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.24
PRK11189	296	lipoprotein NlpI; Provisional	99.23
PF13041	50	PPR_2: PPR repeat family	99.23
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.22
PF13041	50	PPR_2: PPR repeat family	99.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.11
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.05
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.03
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.96
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.89
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.82
PLN02789	320	farnesyltranstransferase	98.81
PRK04841	903	transcriptional regulator MalT; Provisional	98.78
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.68
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.67
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.66
KOG1125	579	consensus TPR repeat-containing protein [General f	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.61
PLN02789	320	farnesyltranstransferase	98.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.6
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.54
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
PRK04841	903	transcriptional regulator MalT; Provisional	98.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.49
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.4
PF12854	34	PPR_1: PPR repeat	98.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.37
PF12854	34	PPR_1: PPR repeat	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.31
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.24
KOG0553	304	consensus TPR repeat-containing protein [General f	98.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.2
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.16
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.07
KOG0553	304	consensus TPR repeat-containing protein [General f	98.04
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.04
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
PRK15331	165	chaperone protein SicA; Provisional	97.98
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.95
PF13371	73	TPR_9: Tetratricopeptide repeat	97.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.9
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.86
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.77
PF13431	34	TPR_17: Tetratricopeptide repeat	97.77
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.75
PRK10803	263	tol-pal system protein YbgF; Provisional	97.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.67
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.58
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.55
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.54
PF12688	120	TPR_5: Tetratrico peptide repeat	97.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.53
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.49
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.43
PF13428	44	TPR_14: Tetratricopeptide repeat	97.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.36
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.33
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.33
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.32
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.31
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.27
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.23
PF13512	142	TPR_18: Tetratricopeptide repeat	97.19
PRK10803	263	tol-pal system protein YbgF; Provisional	97.16
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.12
PF13371	73	TPR_9: Tetratricopeptide repeat	97.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.06
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.05
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.98
PF12688	120	TPR_5: Tetratrico peptide repeat	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.85
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.81
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.81
PRK11906	458	transcriptional regulator; Provisional	96.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.74
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
KOG4555	175	consensus TPR repeat-containing protein [Function	96.48
PRK11906	458	transcriptional regulator; Provisional	96.48
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.36
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.27
KOG1258	577	consensus mRNA processing protein [RNA processing	96.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.25
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.24
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.18
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.0
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.99
PRK11619	644	lytic murein transglycosylase; Provisional	95.91
PRK15331	165	chaperone protein SicA; Provisional	95.89
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.89
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.88
KOG1585	308	consensus Protein required for fusion of vesicles	95.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.81
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.8
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.73
PF13512	142	TPR_18: Tetratricopeptide repeat	95.71
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.64
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.6
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.54
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.47
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.46
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.45
KOG1258	577	consensus mRNA processing protein [RNA processing	95.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.24
KOG4234	271	consensus TPR repeat-containing protein [General f	95.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.84
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.82
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.8
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.65
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.55
KOG4555	175	consensus TPR repeat-containing protein [Function	94.46
PF13428	44	TPR_14: Tetratricopeptide repeat	94.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.39
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.39
KOG4234	271	consensus TPR repeat-containing protein [General f	94.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.02
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.89
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.88
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.71
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.43
KOG3941	406	consensus Intermediate in Toll signal transduction	93.24
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.05
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.0
KOG3941	406	consensus Intermediate in Toll signal transduction	92.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.81
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.81
PRK09687	280	putative lyase; Provisional	92.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.56
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.5
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.44
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.44
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.0
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.91
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.77
KOG1585	308	consensus Protein required for fusion of vesicles	91.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.6
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.52
COG3947	361	Response regulator containing CheY-like receiver a	91.39
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.35
PRK09687	280	putative lyase; Provisional	91.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.04
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.01
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.83
KOG1586	288	consensus Protein required for fusion of vesicles	90.78
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.74
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.47
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.43
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.33
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.09
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.04
PRK10941	269	hypothetical protein; Provisional	90.0
KOG1586	288	consensus Protein required for fusion of vesicles	89.94
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	89.86
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.54
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.29
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.05
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.94
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.91
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	87.55
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.5
PF13431	34	TPR_17: Tetratricopeptide repeat	87.41
PRK11619	644	lytic murein transglycosylase; Provisional	87.33
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	86.95
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	85.81
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.78
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.56
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.55
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.38
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.01
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.73
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.53
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.38
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	84.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.26
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.97
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.68
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	83.31
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.19
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.19
PRK12798	421	chemotaxis protein; Reviewed	83.12
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	82.72
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.47
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	82.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.95
KOG4570	418	consensus Uncharacterized conserved protein [Funct	80.91
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.65
PF13929	292	mRNA_stabil: mRNA stabilisation	80.41
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.15
KOG1550	552	consensus Extracellular protein SEL-1 and related	80.08

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.1e-94  Score=786.17  Aligned_cols=631  Identities=36%  Similarity=0.643  Sum_probs=619.8

Q ss_pred             ccCCc-chHhhhhHHHhhhhcCChhHHHHhhhhh-----hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHH
Q 006627            4 KNGFL-NLEQTRQCHAHIIKTHFKFSYTNIINPL-----TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTI   77 (638)
Q Consensus         4 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   77 (638)
                      +.|+. +..++|.|+.+|.+.|+++.|.++|++|     .+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus       114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l  193 (857)
T PLN03077        114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV  193 (857)
T ss_pred             HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence            34555 8889999999999999999999999999     89999999999999999999999999999999999999999


Q ss_pred             HHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHH
Q 006627           78 LKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL  157 (638)
Q Consensus        78 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  157 (638)
                      +++|...+++..+.+++..+.+.|+.||+.+++.|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+
T Consensus       194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl  273 (857)
T PLN03077        194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL  273 (857)
T ss_pred             HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 006627          158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ  237 (638)
Q Consensus       158 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  237 (638)
                      ++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..+  |..+|+.|+.+|++.|++++|.++|++|..
T Consensus       274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  351 (857)
T PLN03077        274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMET  351 (857)
T ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--chHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence            999999999999999999999999999999999999999999999988  999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHH
Q 006627          238 NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALV  317 (638)
Q Consensus       238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  317 (638)
                      ||..+||.+|.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+
T Consensus       352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li  431 (857)
T PLN03077        352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI  431 (857)
T ss_pred             CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHH
Q 006627          318 DMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKW  397 (638)
Q Consensus       318 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  397 (638)
                      .+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+
T Consensus       432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~  510 (857)
T PLN03077        432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE  510 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence            9999999999999999999999999999999999999999999999999985 699999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627          398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG  477 (638)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~  477 (638)
                      ++..+.+.|+.++..++++|+++|+++|++++|.++|+++ .+|+.+||+++.+|++.|+.++|+++|++|.+.|+.||.
T Consensus       511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~  589 (857)
T PLN03077        511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE  589 (857)
T ss_pred             HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL  557 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~  557 (638)
                      .||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|..++.+|..
T Consensus       590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~  669 (857)
T PLN03077        590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI  669 (857)
T ss_pred             ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999966799999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeEEEECCEEEEEEeCCccCCC
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWK  637 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (638)
                      +|+.+.++.+.+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||++||++++.||.|+.|+.+|.+
T Consensus       670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~  749 (857)
T PLN03077        670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ  749 (857)
T ss_pred             cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             C
Q 006627          638 S  638 (638)
Q Consensus       638 ~  638 (638)
                      +
T Consensus       750 ~  750 (857)
T PLN03077        750 I  750 (857)
T ss_pred             h
Confidence            4

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.3e-77  Score=650.21  Aligned_cols=571  Identities=28%  Similarity=0.494  Sum_probs=547.6

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMY  116 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  116 (638)
                      ..+|.++.++++.|++++|..+|+.|.+.|++|+..+|..++.+|...+..+.+.+++..+.+.+..++..++|.++..|
T Consensus        52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~  131 (857)
T PLN03077         52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF  131 (857)
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHH
Q 006627          117 SECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHA  196 (638)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  196 (638)
                      ++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++.
T Consensus       132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~  211 (857)
T PLN03077        132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA  211 (857)
T ss_pred             HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChH
Q 006627          197 CVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEI  276 (638)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  276 (638)
                      .+.+.|..+  +..+++.|+.+|++.|+++.|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..
T Consensus       212 ~~~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~  289 (857)
T PLN03077        212 HVVRFGFEL--DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM  289 (857)
T ss_pred             HHHHcCCCc--ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence            999999988  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 006627          277 TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC  356 (638)
Q Consensus       277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~  356 (638)
                      ||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.+|.+|++.|+
T Consensus       290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~  369 (857)
T PLN03077        290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL  369 (857)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627          357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE  436 (638)
Q Consensus       357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  436 (638)
                      +++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++
T Consensus       370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627          437 AIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHY  516 (638)
Q Consensus       437 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~  516 (638)
                      |.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.+++..+.+. |+.++..++
T Consensus       450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~  527 (857)
T PLN03077        450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLP  527 (857)
T ss_pred             CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceec
Confidence            9999999999999999999999999999999986 58999999999999999999999999999999886 999998888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCC
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILE--IEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      +.|+.+|+++|+.++|.++|+++  .||..+|+.++.+|.++|+.++|.++|+++.+  ..|+ ..+|..+..+|.+.|+
T Consensus       528 naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        528 NALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM  604 (857)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence            88888888888888888888888  78888888888888888888888888888876  4555 5678888888888888


Q ss_pred             HHHHHHHHHHHh-hcCCcCCC
Q 006627          595 WNDVAGVRRVMK-EIRVKKEP  614 (638)
Q Consensus       595 ~~~A~~~~~~~~-~~~~~~~~  614 (638)
                      +++|.++|+.|. +.|+.|+.
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCch
Confidence            888888888887 56777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.2e-74  Score=610.06  Aligned_cols=501  Identities=30%  Similarity=0.521  Sum_probs=492.0

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC-CcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHH
Q 006627          135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMD-IRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIAT  213 (638)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  213 (638)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.+.+++..+.+.|..+  +..+++
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~n  162 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP--DQYMMN  162 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--chHHHH
Confidence            567799999999999999999999999999865 78999999999999999999999999999999999988  999999


Q ss_pred             HHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627          214 ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL  293 (638)
Q Consensus       214 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  293 (638)
                      .++.+|++.|+++.|.++|++|.+||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 006627          294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR  373 (638)
Q Consensus       294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  373 (638)
                      +.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|...|+.
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 006627          374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYG  453 (638)
Q Consensus       374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~  453 (638)
                      ||..||+.++.+|++.|+++.|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||.|+.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 006627          454 MHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAH  533 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  533 (638)
                      +.|+.++|+++|++|.+.|+.||..||..++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999987799999999999999999999999999


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          534 EMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       534 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                      +++++|+..|+..+|+.++.+|..+|+.+.|..+++++++++|++...|..|+++|.+.|+|++|.++++.|++.|+++.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEECCEEEEEEeCCccCCC
Q 006627          614 PGFSSVEVNGLVHKFIRGGMVNWK  637 (638)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~  637 (638)
                      ||++||++++.||.|+.|+.+|-+
T Consensus       563 ~g~s~i~~~~~~~~f~~~d~~h~~  586 (697)
T PLN03081        563 PACTWIEVKKQDHSFFSGDRLHPQ  586 (697)
T ss_pred             CCeeEEEECCeEEEEccCCCCCcc
Confidence            999999999999999999999854

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.3e-67  Score=557.19  Aligned_cols=525  Identities=15%  Similarity=0.211  Sum_probs=476.7

Q ss_pred             CcchHhhhhHHHhhhhcCChhHHHHhhhhh----------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHH
Q 006627            7 FLNLEQTRQCHAHIIKTHFKFSYTNIINPL----------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPT   76 (638)
Q Consensus         7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   76 (638)
                      ..|...|..++..|++.|++++|.++|++|          ..++.++..|.+.|.+++|+.+++.|..    ||..+|+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            347888999999999999999999999999          3456778889999999999999999974    99999999


Q ss_pred             HHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCC
Q 006627           77 ILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP----NRDVVSWSTMIRGYHRGGL  152 (638)
Q Consensus        77 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~  152 (638)
                      ++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.    .||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999999999999999999999999999998    4899999999999999999


Q ss_pred             chHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 006627          153 PEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLF  232 (638)
Q Consensus       153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  232 (638)
                      +++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|...+.+..||..+|+.++.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998854444449999999999999999999999999


Q ss_pred             hccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 006627          233 NRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEF  308 (638)
Q Consensus       233 ~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  308 (638)
                      +.|.+    |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99986    66789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMK----SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLS  384 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  384 (638)
                      +..+|+.++.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999995    67999999999999999999999999999999999999999999999


Q ss_pred             HHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006627          385 LCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIF  464 (638)
Q Consensus       385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  464 (638)
                      +|++.|+++.|.+++.+|.+.|+.||..+|++++..+.  +++++|..+.+.+...+.      .......+..+.|+.+
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~Al~l  834 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GRPQIENKWTSWALMV  834 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------cccccccchHHHHHHH
Confidence            99999999999999999999999999999999987644  245555555433221110      0111122334679999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 006627          465 FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PL  541 (638)
Q Consensus       465 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~  541 (638)
                      |++|.+.|+.||..||..++.+++..+..+.+..+++.+... +..|+..+|+.+++++.+.  .++|..++++|   ++
T Consensus       835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi  911 (1060)
T PLN03218        835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV  911 (1060)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence            999999999999999999998888999999999999988765 7888999999999998432  47899999999   66


Q ss_pred             CCCHh
Q 006627          542 RPNMI  546 (638)
Q Consensus       542 ~p~~~  546 (638)
                      .|+..
T Consensus       912 ~p~~~  916 (1060)
T PLN03218        912 VPSVS  916 (1060)
T ss_pred             CCCcc
Confidence            67653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-66  Score=551.91  Aligned_cols=470  Identities=26%  Similarity=0.441  Sum_probs=456.4

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCC-CCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNG-SEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM  115 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  115 (638)
                      .+|+.+|..+.+.|++++|+++|+.|.+.+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+++.++..
T Consensus        88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~  167 (697)
T PLN03081         88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM  167 (697)
T ss_pred             eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            589999999999999999999999998764 7899999999999999999999999999999999999999999999999


Q ss_pred             hhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHH
Q 006627          116 YSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIH  195 (638)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~  195 (638)
                      |++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.+.+++
T Consensus       168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~  247 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH  247 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627          196 ACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE  275 (638)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  275 (638)
                      ..+.+.|..+  +..+++.|+++|++.|++++|.++|+.|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus       248 ~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~  325 (697)
T PLN03081        248 CCVLKTGVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ  325 (697)
T ss_pred             HHHHHhCCCc--cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            9999999988  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcC
Q 006627          276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAH  355 (638)
Q Consensus       276 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~  355 (638)
                      .||+.++.+|++.|+++.|.+++..|.+.|++|+..++++|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|
T Consensus       326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G  405 (697)
T PLN03081        326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG  405 (697)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 006627          356 CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK-QGLEVDVILKTALVDMYAKCGDVNGAYRLF  434 (638)
Q Consensus       356 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  434 (638)
                      +.++|+++|++|...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++
T Consensus       406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~  485 (697)
T PLN03081        406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI  485 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986 699999999999999999999999999999


Q ss_pred             HcCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC
Q 006627          435 SEAI-YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP  511 (638)
Q Consensus       435 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p  511 (638)
                      +++. .|+..+|++|+.+|...|+++.|..+++++.+.  .|+ ..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus       486 ~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k  561 (697)
T PLN03081        486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM  561 (697)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence            9987 789999999999999999999999999999754  554 579999999999999999999999999986 8754

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=8.8e-64  Score=533.63  Aligned_cols=501  Identities=16%  Similarity=0.170  Sum_probs=460.3

Q ss_pred             CCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCC-CCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHH
Q 006627           68 EVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGL-DGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRG  146 (638)
Q Consensus        68 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~  146 (638)
                      .++...|..++..+.+.|+++.|.++|+.|.+.|+ +++...++.++..|.+.|.+++|..+|+.|..||..+|+.++.+
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            56677899999999999999999999999999984 67888889999999999999999999999999999999999999


Q ss_pred             HHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChH
Q 006627          147 YHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLA  226 (638)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  226 (638)
                      |++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|..+  |..+|+.++.+|++.|+++
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P--dvvTynaLI~gy~k~G~~e  524 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA--NVHTFGALIDGCARAGQVA  524 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999887  9999999999999999999


Q ss_pred             HHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHH--cCccCChHhHHHHHHHhcccCChhhHHHHHHH
Q 006627          227 YAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIE--ENVFPSEITILSLIIECGFVGGLQLGKWLHAY  300 (638)
Q Consensus       227 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  300 (638)
                      +|.++|+.|.+    ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|+++.|.++|+.
T Consensus       525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999964    8889999999999999999999999999976  57899999999999999999999999999999


Q ss_pred             HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh
Q 006627          301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK----SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE  376 (638)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  376 (638)
                      |.+.|++|+..+|+.++.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|.+++++|.+.|+.||.
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            9999999999999999999999999999999999997    468899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHH
Q 006627          377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGY  452 (638)
Q Consensus       377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~  452 (638)
                      .+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.++.+|
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876    68999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHHhhhcCC
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH----A-------------------GLVTEGKSVFDKMVHGLGL  509 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~  509 (638)
                      ++.|++++|.+++++|.+.|+.||..+|+.++..|.+    .                   +..+.|..+|++|.+. |+
T Consensus       765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi  843 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GT  843 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CC
Confidence            9999999999999999999999999999999876542    1                   1236788999999886 99


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          510 VPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .||..+|+.++.++.+.+..+.+..+++.|   +..|+..+|+.++.++.+.  .++|..+++++.+
T Consensus       844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~  908 (1060)
T PLN03218        844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS  908 (1060)
T ss_pred             CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence            999999999998888888899999998888   3556788899999887322  3679999999977

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5e-37  Score=344.51  Aligned_cols=577  Identities=13%  Similarity=0.009  Sum_probs=395.8

Q ss_pred             HHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCc
Q 006627           16 CHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMT   87 (638)
Q Consensus        16 l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   87 (638)
                      +...+...|+++.|...|..+        ..+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++
T Consensus       301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  379 (899)
T TIGR02917       301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF  379 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence            334455566666666666554        334455556666666666666666665543 33445556666666666666


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627           88 HLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN--R-DVVSWSTMIRGYHRGGLPEEALEVMREMR  164 (638)
Q Consensus        88 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  164 (638)
                      ++|.+.++.+.+.. +.+...+..+...+...|++++|...++.+.+  | +...+..++..+.+.|++++|.++++.+.
T Consensus       380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  458 (899)
T TIGR02917       380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE  458 (899)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            66666666666553 33455556666666666666666666665543  1 23344555666667777777777777666


Q ss_pred             HCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcc
Q 006627          165 FMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVV  241 (638)
Q Consensus       165 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~  241 (638)
                      .. .+++..++..+...+...|+.+.|...+..+.+..+.   +...+..+...+...|++++|.+.++.+.+   .+..
T Consensus       459 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  534 (899)
T TIGR02917       459 KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR  534 (899)
T ss_pred             Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence            53 2445566677777777777777777777777665543   455666677777777777777777776653   3445


Q ss_pred             cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627          242 SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYG  321 (638)
Q Consensus       242 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (638)
                      ++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..+...+.
T Consensus       535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            66677777777777777777777776653 3344556667777777777777777777776543 455667777777777


Q ss_pred             hcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHH
Q 006627          322 KCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL  398 (638)
Q Consensus       322 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  398 (638)
                      ..|++++|...|+++.+   .+...+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|..+
T Consensus       613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  691 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI  691 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            78888888877776643   245566777777777788888888887776542 33456677777777778888888888


Q ss_pred             HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627          399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN  476 (638)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  476 (638)
                      ++.+.+.. +.+...+..+...+...|++++|.+.|+.+.  .|+..++..+..++...|++++|.+.++++.+.. +.+
T Consensus       692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~  769 (899)
T TIGR02917       692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND  769 (899)
T ss_pred             HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence            87777765 5566677777777778888888888887765  3444666667777778888888888888877753 456


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA  554 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  554 (638)
                      ...+..+...|...|++++|.++|+++.+  ..++++..+..++..+...|+ .+|+++++++ ...| ++.++..+...
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~  846 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            66777777778888888888888888776  345566777777777877777 7788887776 3344 35566677777


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus       847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            7778888888888888888888878888888888888888888888887775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-35  Score=333.69  Aligned_cols=591  Identities=12%  Similarity=0.005  Sum_probs=396.9

Q ss_pred             cCCcchHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cccHH
Q 006627            5 NGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVD-NFTIP   75 (638)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~   75 (638)
                      ..+.+..++..+...+...|++++|...++.+        ..+......+...|++++|...|+.+.+.+  |+ ...+.
T Consensus       222 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~  299 (899)
T TIGR02917       222 LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALL  299 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHH
Confidence            34457777888888888888888888888776        222223334455677777777777766543  22 22233


Q ss_pred             HHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCC
Q 006627           76 TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGL  152 (638)
Q Consensus        76 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  152 (638)
                      .+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+   .+...+..+...+.+.|+
T Consensus       300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  378 (899)
T TIGR02917       300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD  378 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence            33344555666666666666665543 33445555555555566666666665555433   233445555555555556


Q ss_pred             chHHHHHHHHhHHCCCcCCHhhHHHHHHH----------------------------------hcccCchHHHHHHHHHH
Q 006627          153 PEEALEVMREMRFMDIRPSEVAMISMVSL----------------------------------FADVADVDLGKAIHACV  198 (638)
Q Consensus       153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~----------------------------------~~~~~~~~~a~~~~~~~  198 (638)
                      +++|.++|+++.+.. +.+...+..+...                                  +...|+.+.|..++..+
T Consensus       379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  457 (899)
T TIGR02917       379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL  457 (899)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            666655555554431 1122233333334                                  44444444554444444


Q ss_pred             HHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627          199 VRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE  275 (638)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  275 (638)
                      ....+.   ++.++..+...+...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.++++.+.+ +.+.
T Consensus       458 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~  533 (899)
T TIGR02917       458 EKKQPD---NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL  533 (899)
T ss_pred             HHhCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence            443222   445566666666666666666666665543   223345555666666666666666666666542 2344


Q ss_pred             HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHH
Q 006627          276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYA  352 (638)
Q Consensus       276 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~  352 (638)
                      .++..+...+.+.|+.+.+...++.+.+.+ +.+...+..++..+...|++++|..+++.+.+   .+...|..+...+.
T Consensus       534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            556666666666777777777776666554 34455566677777777777777777776653   24556777777777


Q ss_pred             hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627          353 QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR  432 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  432 (638)
                      ..|++++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|.+
T Consensus       613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  690 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK  690 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777776543 3344556666777777777888877777777654 5556777777777777888888887


Q ss_pred             HHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627          433 LFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL  509 (638)
Q Consensus       433 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  509 (638)
                      +++.+..   .+...+..+...+...|++++|...++++...  .|+..++..+..++.+.|++++|.+.++++.+  ..
T Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~  766 (899)
T TIGR02917       691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--TH  766 (899)
T ss_pred             HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence            7777652   24556777778888888888888888888876  45557777788888888999999998888886  45


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627          510 VPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN  587 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  587 (638)
                      +.+...+..+...+...|++++|.+.|+++ . .++++.++..+...+...|+ .+|+..+++++++.|+++..+..++.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~  845 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW  845 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            567788888899999999999999999988 3 34467888889999999999 88999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          588 IYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       588 ~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      ++...|++++|.++++++.+.++.
T Consensus       846 ~~~~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       846 LLVEKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999999999999999999877654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4.7e-27  Score=263.23  Aligned_cols=580  Identities=11%  Similarity=0.016  Sum_probs=418.4

Q ss_pred             chHhhhhHHHhhhhcCChhHHHHhhhhh--------hc----------------HHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627            9 NLEQTRQCHAHIIKTHFKFSYTNIINPL--------TR----------------YNSLVTSYIKNNKPSSALNIYAFMRK   64 (638)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~----------------~~~ll~~~~~~~~~~~a~~~~~~m~~   64 (638)
                      |..++..+...+.+.|+.++|.+.++++        ..                ...+.+.+...|++++|+..|+.+.+
T Consensus        61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~  140 (1157)
T PRK11447         61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN  140 (1157)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence            6777777777778888888888877777        11                12223356677888888888888776


Q ss_pred             CCCCCCcccHHHHHH-HHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCc------
Q 006627           65 NGSEVDNFTIPTILK-ACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDV------  137 (638)
Q Consensus        65 ~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------  137 (638)
                      .+ +|+...-..... .....++.++|.+.++.+.+.. +.+...+..+...+...|+.++|+..++++.+...      
T Consensus       141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa  218 (1157)
T PRK11447        141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA  218 (1157)
T ss_pred             CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence            53 333221111111 1223477778888888877765 55666777777777777888888887777643111      


Q ss_pred             chH-----------------HHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHH
Q 006627          138 VSW-----------------STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR  200 (638)
Q Consensus       138 ~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  200 (638)
                      ..|                 ...+..+-.......|...+..+......|+... ...-..+...|++++|...++..++
T Consensus       219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~  297 (1157)
T PRK11447        219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVR  297 (1157)
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            011                 1111111111123344444444433222233221 1223445678999999999999998


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--CCcc---cHH------------HHHHHHHhCCChHHHHHHH
Q 006627          201 NCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--NSVV---SWT------------VMISGYIRCNEINEGVRLF  263 (638)
Q Consensus       201 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~------------~li~~~~~~g~~~~a~~~~  263 (638)
                      ..+.   +..++..+...+.+.|++++|+..|++..+  |+..   .|.            .....+.+.|++++|.+.|
T Consensus       298 ~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~  374 (1157)
T PRK11447        298 ANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY  374 (1157)
T ss_pred             hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7665   678889999999999999999999998765  3221   121            2234677899999999999


Q ss_pred             HHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC---
Q 006627          264 AEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD---  340 (638)
Q Consensus       264 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---  340 (638)
                      ++..+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+. .++.++|..+++.+....   
T Consensus       375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~  451 (1157)
T PRK11447        375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS  451 (1157)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence            9998863 2345566778888999999999999999998765 334556666777664 467899999998776431   


Q ss_pred             ---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC-ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 006627          341 ---------VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRP-NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD  410 (638)
Q Consensus       341 ---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  410 (638)
                               ...+..+...+...|++++|++.|++..+.  .| +...+..+...+.+.|++++|...++.+.+.. +.+
T Consensus       452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~  528 (1157)
T PRK11447        452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND  528 (1157)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence                     123455667788899999999999998875  45 44566677888999999999999999998754 455


Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC----c---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRD----I---------CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG  477 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~  477 (638)
                      ...+..+...+...++.++|...++.+....    .         ..+..+...+...|+.++|..+++.     .+++.
T Consensus       529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~  603 (1157)
T PRK11447        529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST  603 (1157)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence            5666666667788999999999999876321    1         1123456678889999999999872     25566


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+..+...+.+.|++++|.+.|+++.+  ..+.+...+..++.++...|++++|++.++.. ...| +...+..+..++
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~  681 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW  681 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            7788889999999999999999999987  34456788899999999999999999999987 3455 456677788888


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYG------YNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ...|++++|.+.++++++..|+++.      .+..++.++...|++++|+..|++...
T Consensus       682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999998776543      666789999999999999999998853

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.6e-26  Score=259.01  Aligned_cols=587  Identities=11%  Similarity=0.011  Sum_probs=434.4

Q ss_pred             hhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccH----------
Q 006627           13 TRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTI----------   74 (638)
Q Consensus        13 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------   74 (638)
                      .-..++.+...++.+.|.+.++++        ..+..+...+.+.|+.++|...++++.+..  |+...+          
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~  108 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS  108 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence            445567888999999999999998        778888999999999999999999999864  444322          


Q ss_pred             -------HHHHHHHHcccCchHHHHHHHHHHHhCCCCChhH-HHHHHHhhhcCCChhHHHHHhccCCC--C-CcchHHHH
Q 006627           75 -------PTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYV-SNALIQMYSECGSLVSARYLFDEMPN--R-DVVSWSTM  143 (638)
Q Consensus        75 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l  143 (638)
                             ..+.+.+...|++++|.+.++.+.+.+ +|+... ...........|+.++|+..++++.+  | +...+..+
T Consensus       109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L  187 (1157)
T PRK11447        109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL  187 (1157)
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                   233346778899999999999998765 444332 11222223346899999999999876  4 45577888


Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCc----------------CCHh---hHHHHHHHhcccCchHHHHHHHHHHHHhccC
Q 006627          144 IRGYHRGGLPEEALEVMREMRFMDIR----------------PSEV---AMISMVSLFADVADVDLGKAIHACVVRNCKD  204 (638)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  204 (638)
                      ...+...|+.++|+..++++......                ++..   .+...+..+-.......+...+.........
T Consensus       188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d  267 (1157)
T PRK11447        188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD  267 (1157)
T ss_pred             HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence            89999999999999999998653210                0000   1111122222222334444444444333222


Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhH--
Q 006627          205 EKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE-ITI--  278 (638)
Q Consensus       205 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~--  278 (638)
                      +  .. ........+...|++++|+..|++..+  | +...+..+...+.+.|++++|...|++..+....... ..+  
T Consensus       268 p--~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        268 P--AF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             c--ch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence            2  21 122445677889999999999998875  3 5567888999999999999999999998875432211 111  


Q ss_pred             ----------HHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHH
Q 006627          279 ----------LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWN  345 (638)
Q Consensus       279 ----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~  345 (638)
                                ......+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|++.|++..+.   +...+.
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                      122345678899999999999999875 445667778899999999999999999987743   444566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcC--------CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHH
Q 006627          346 AVISAYAQAHCIDKAFELFIHMKVSKVR--------PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL  417 (638)
Q Consensus       346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  417 (638)
                      .+...+. .++.++|+..++.+......        .....+..+...+...|++++|.+.+++..+.. |.+..++..+
T Consensus       424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L  501 (1157)
T PRK11447        424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL  501 (1157)
T ss_pred             HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            6666664 46789999988765432100        011234455667788999999999999999876 5667788889


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH---------HHHHHHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI---------TFIGLLN  485 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~  485 (638)
                      ...|.+.|++++|...++++..  | +...+..+...+...++.++|+..++.+......++..         .+.....
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~  581 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN  581 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999998752  3 45555555566778899999999998765432222221         2334566


Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHH
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~  563 (638)
                      .+...|+.++|.++++.      .+++...+..+...+.+.|++++|++.++++ ...| +...+..++..+...|++++
T Consensus       582 ~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        582 RLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            78899999999998872      2345566778899999999999999999998 4455 57889999999999999999


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP  614 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  614 (638)
                      |++.++++.+..|+++..+..++.++...|++++|.++++++.+......|
T Consensus       656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            999999999999999999999999999999999999999999876544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=5.4e-23  Score=219.84  Aligned_cols=558  Identities=10%  Similarity=-0.037  Sum_probs=367.3

Q ss_pred             hhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHH
Q 006627           20 IIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGK   91 (638)
Q Consensus        20 ~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~   91 (638)
                      +...|++++|++.|+.+        ..+..|...|...|++++|+..+++..+.  .|+...|..++..+   +++++|.
T Consensus        54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~  128 (987)
T PRK09782         54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV  128 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence            33459999999999988        88899999999999999999999999986  45555555544333   8899999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHh--------hhcCCChhHHHHHhccCCCCC--cchHHHH-HHHHHhCCCchHHHHHH
Q 006627           92 EIHGFAIKNGLDGDAYVSNALIQM--------YSECGSLVSARYLFDEMPNRD--VVSWSTM-IRGYHRGGLPEEALEVM  160 (638)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~  160 (638)
                      .+++++.+.. |-+..++..+...        |.+.++...++.  .....|+  ....... ...|.+.|++++|++.+
T Consensus       129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            9999999886 5556666666665        777666666666  2223343  4444444 88999999999999999


Q ss_pred             HHhHHCCCcCCHhhHHHHHHHhcc-cCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--
Q 006627          161 REMRFMDIRPSEVAMISMVSLFAD-VADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--  237 (638)
Q Consensus       161 ~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  237 (638)
                      .++.+.+.. +..-...+-.++.. .++ +.+..++..    ....  ++.+...+...|.+.|+.++|.++++++..  
T Consensus       206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~--d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~  277 (987)
T PRK09782        206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFT--DPQSRITYATALAYRGEKARLQHYLIENKPLF  277 (987)
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hccc--CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence            999997522 23334445556655 355 666666432    2222  888999999999999999999999998873  


Q ss_pred             ---CCccc------------------------------HHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627          238 ---NSVVS------------------------------WTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIE  284 (638)
Q Consensus       238 ---~~~~~------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  284 (638)
                         |...+                              .-.++..+.+.++++.+.++..      +.|....  ..++.
T Consensus       278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~  349 (987)
T PRK09782        278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERY  349 (987)
T ss_pred             cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHH
Confidence               11111                              1112455666676665554421      3444443  23332


Q ss_pred             hc--ccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-C-----CchhHHHHHHHHHhcCC
Q 006627          285 CG--FVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS-K-----DVMIWNAVISAYAQAHC  356 (638)
Q Consensus       285 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~  356 (638)
                      ..  ..+...++...+..|.+.. +-+......+.-.....|+.++|..+|....+ +     +....+.++..|.+.+.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  428 (987)
T PRK09782        350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY  428 (987)
T ss_pred             hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence            22  2345555555555555442 23444445555556677888888888877654 1     12233455666655544


Q ss_pred             ---HHHHHHH----------------------HHHHHH-cCcCC---ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 006627          357 ---IDKAFEL----------------------FIHMKV-SKVRP---NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL  407 (638)
Q Consensus       357 ---~~~a~~~----------------------~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  407 (638)
                         ..++..+                      +..... .+..|   +...+..+..++.. ++.++|...+....... 
T Consensus       429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-  506 (987)
T PRK09782        429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-  506 (987)
T ss_pred             ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence               3333222                      111111 11112   33444555544444 67777887766666543 


Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN  485 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  485 (638)
                       |+......+...+...|++++|...|+++..  ++...+..+..++.+.|++++|...+++..+.. +++...+..+..
T Consensus       507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~  584 (987)
T PRK09782        507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA  584 (987)
T ss_pred             -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence             4443333444455678888888888876552  344455666677778888888888888887754 333333444444


Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~  563 (638)
                      .+...|++++|...+++..+   ..|+...+..+..++.+.|+.++|...+++. ...|+ ...+..+..++...|++++
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            45566888888888888874   3456777778888888888888888888877 45554 5666777777888888888


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      |+..++++++++|+++.++..++.++...|++++|+..+++..+..
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888888775433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.9e-22  Score=215.73  Aligned_cols=585  Identities=9%  Similarity=-0.022  Sum_probs=404.6

Q ss_pred             cCCcchHhhhhHHHhhhhcCChhHHHHhhhhh-------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHH
Q 006627            5 NGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL-------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTI   77 (638)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   77 (638)
                      ..+.|..++..|...|...|++++|+..+++.       ..|..++..+   +++++|..+|+++.... |-+...+..+
T Consensus        73 ~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~l  148 (987)
T PRK09782         73 QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLR  148 (987)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHH
Confidence            34558889999999999999999999999988       3333333333   88899999999998864 2233444444


Q ss_pred             HHHH-----HcccCchHHHHHHHHHHHhCCCCChhHHHHH-HHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHH
Q 006627           78 LKAC-----AQVLMTHLGKEIHGFAIKNGLDGDAYVSNAL-IQMYSECGSLVSARYLFDEMPNR---DVVSWSTMIRGYH  148 (638)
Q Consensus        78 l~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~  148 (638)
                      ....     ....+.++|.+.++ .......|++.+.... ...|.+.|++++|+..++++.+.   +..-...|..+|.
T Consensus       149 a~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~  227 (987)
T PRK09782        149 CRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLL  227 (987)
T ss_pred             HHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4430     11233455666665 3333334445555555 78888888888888888877652   2233455556666


Q ss_pred             h-CCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCC--------------------
Q 006627          149 R-GGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKL--------------------  207 (638)
Q Consensus       149 ~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------  207 (638)
                      . .++ +++..+++.    .++-+......+...+...|+.+.|..++..+.......+.                    
T Consensus       228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~  302 (987)
T PRK09782        228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA  302 (987)
T ss_pred             HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence            6 355 666666442    23456677777777788888888877777665433222100                    


Q ss_pred             ------ch---hHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhH
Q 006627          208 ------GV---AIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI  278 (638)
Q Consensus       208 ------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  278 (638)
                            ..   .....++..+.+.++++.+.++.. ....+. ..-.-..+....+...++...+..|.+.. +-+....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l  379 (987)
T PRK09782        303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRL  379 (987)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence                  01   112233677788888887777744 222222 22111122223466777777777776641 2244444


Q ss_pred             HHHHHHhcccCChhhHHHHHHHHHHh-c-CCCchhhHHHHHHHHHhcCC---hHHHHHH---------------------
Q 006627          279 LSLIIECGFVGGLQLGKWLHAYILRN-G-FEFSLAMANALVDMYGKCRE---IRSARTL---------------------  332 (638)
Q Consensus       279 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~---------------------  332 (638)
                      ..+.......|+.++|.++++..... + -.++......++..|.+.+.   ...+..+                     
T Consensus       380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  459 (987)
T PRK09782        380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD  459 (987)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence            44555566788899999998887662 1 22344455577777777665   3333222                     


Q ss_pred             ----HhcCCC---C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHH
Q 006627          333 ----FDGMKS---K--DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIE  403 (638)
Q Consensus       333 ----~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  403 (638)
                          +.....   +  +...|..+..++.. ++.++|+..+.+....  .|+......+...+...|++++|...++.+.
T Consensus       460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                111111   1  44566777777766 7888999988877654  4665554444555678999999999999876


Q ss_pred             HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 006627          404 KQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMM---AGYGMHGCGEEALIFFVDMERSGVKPNGITF  480 (638)
Q Consensus       404 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~  480 (638)
                      ..  +|+...+..+...+.+.|++++|...+++....++...+...   ......|++++|...+++..+.  .|+...+
T Consensus       537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~  612 (987)
T PRK09782        537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAY  612 (987)
T ss_pred             cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHH
Confidence            54  455555667788889999999999999887755444333333   3344559999999999999976  5778889


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc
Q 006627          481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH  558 (638)
Q Consensus       481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  558 (638)
                      ..+..++.+.|++++|...+++...  ..+.+...+..+..++...|++++|+..++++ ...| ++..+..+..++...
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            9999999999999999999999986  34445678888889999999999999999988 5556 578889999999999


Q ss_pred             CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      |++++|+..++++++++|+++.+....+++..+..++..|.+.+++.-.-.+.
T Consensus       691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999999999999999999999999999999988866544443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-21  Score=183.23  Aligned_cols=463  Identities=15%  Similarity=0.135  Sum_probs=349.6

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHH-HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006627          141 STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMV-SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMY  219 (638)
Q Consensus       141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~  219 (638)
                      ..|..-..+.|++++|.+.-...-+.  .|+..--..++ ..+....+.+....--....+..+.   -..+|..+.+.+
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q---~ae~ysn~aN~~  126 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ---GAEAYSNLANIL  126 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccch---HHHHHHHHHHHH
Confidence            34445555667777776654433322  12221111122 2222333333322222222222222   467888899999


Q ss_pred             HhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHH-HhcccCChhhHH
Q 006627          220 SKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLII-ECGFVGGLQLGK  295 (638)
Q Consensus       220 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~  295 (638)
                      -..|++++|+..++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+  +.|+.....+-+. ..-..|++.+|.
T Consensus       127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence            999999999999988875   3457888999999999999999999988877  4566655443333 334478888888


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 006627          296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHCIDKAFELFIHMKVSKV  372 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  372 (638)
                      ..|...++... --...|..|...+-..|+...|+..|++..+-|+   ..|-.|...|-..+.+++|...+.+....  
T Consensus       205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--  281 (966)
T KOG4626|consen  205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--  281 (966)
T ss_pred             HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence            88888776542 2345677788888899999999999999876543   47888889999999999999999887653  


Q ss_pred             CCCh-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHH
Q 006627          373 RPNE-VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAM  448 (638)
Q Consensus       373 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l  448 (638)
                      .|+. ..+..+...|-..|.++.|+..+++..+.. |.-+..|+.|..++...|++.+|.+.|.+..   .....+.+.|
T Consensus       282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL  360 (966)
T KOG4626|consen  282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL  360 (966)
T ss_pred             CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence            5654 466667777888999999999999998865 4457889999999999999999999999876   3356788899


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhc
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRA  526 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~  526 (638)
                      ...+...|.+++|..+|....+  +.|.- ..++.|...|-++|++++|+..|++.+   .++|+. ..|+.+...|...
T Consensus       361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence            9999999999999999999886  46655 678999999999999999999999997   577875 7899999999999


Q ss_pred             CChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH----HH
Q 006627          527 GLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV----AG  600 (638)
Q Consensus       527 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A----~~  600 (638)
                      |+.+.|.+.+.++ .+.|. ...+..|...|...|+..+|++.|+.++++.|+.+.++-.++-++--..+|.+=    .+
T Consensus       436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k  515 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK  515 (966)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence            9999999999888 67775 678889999999999999999999999999999999999998887776666652    22


Q ss_pred             HHHHHhh-----cCCcCCCCeeEE
Q 006627          601 VRRVMKE-----IRVKKEPGFSSV  619 (638)
Q Consensus       601 ~~~~~~~-----~~~~~~~~~~~~  619 (638)
                      +++-.++     +-+...|+.+.+
T Consensus       516 l~sivrdql~~~rlpsvhP~hsm~  539 (966)
T KOG4626|consen  516 LVSIVRDQLEKNRLPSVHPHHSML  539 (966)
T ss_pred             HHHHHHHHHhhhcCCccCcccccc
Confidence            2222222     336666766654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=7.9e-20  Score=192.75  Aligned_cols=420  Identities=11%  Similarity=-0.027  Sum_probs=268.7

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006627          139 SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM  218 (638)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (638)
                      .+......+.+.|++++|++.|++...  +.|+...|..+-.++...|+++.|...+...++..+.   +...+..+..+
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a  203 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNRRANA  203 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence            345567778888999999999988776  4677667766766777777777777777776665544   45566666666


Q ss_pred             HHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHH
Q 006627          219 YSKCGNLAYAKQLFNRLNQNSV---VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGK  295 (638)
Q Consensus       219 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  295 (638)
                      |...|++++|...|......+.   .....++..+..    ..+........+.  .                       
T Consensus       204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~-----------------------  254 (615)
T TIGR00990       204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--K-----------------------  254 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--C-----------------------
Confidence            6677777666665543321110   000011110000    1111111111111  0                       


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 006627          296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISA---YAQAHCIDKAFELFIHMKV  369 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~  369 (638)
                                 +.+...+..+.. +...........-+....+.+.   ..+..+...   ....+++++|.+.|++...
T Consensus       255 -----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~  322 (615)
T TIGR00990       255 -----------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD  322 (615)
T ss_pred             -----------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence                       111111111111 1111111111111111111111   111111111   1234678888888888776


Q ss_pred             cC-cCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchh
Q 006627          370 SK-VRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICM  444 (638)
Q Consensus       370 ~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~  444 (638)
                      .+ ..|+ ...+..+...+...|+++.|...++...+.. +.....|..+...+...|++++|...|++..   ..+...
T Consensus       323 ~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  401 (615)
T TIGR00990       323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI  401 (615)
T ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            54 2333 3456666667778888999998888888764 4446677788888888899999998888765   235678


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG  524 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  524 (638)
                      |..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+  ..+.+...++.+..++.
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence            8888888899999999999999988763 44556777888888999999999999999886  34445678888899999


Q ss_pred             hcCChHHHHHHHHhC-CCCCCH-hh-------HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          525 RAGLLDEAHEMIKSM-PLRPNM-IV-------WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      ..|++++|++.|++. ...|+. ..       +......+...|++++|...++++++++|++...+..++.++...|++
T Consensus       479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence            999999999999886 444431 11       111122233468999999999999999999988899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 006627          596 NDVAGVRRVMKEI  608 (638)
Q Consensus       596 ~~A~~~~~~~~~~  608 (638)
                      ++|+++|++..+.
T Consensus       559 ~eAi~~~e~A~~l  571 (615)
T TIGR00990       559 DEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=5.9e-21  Score=181.17  Aligned_cols=415  Identities=13%  Similarity=0.099  Sum_probs=335.5

Q ss_pred             HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCCh
Q 006627          180 SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEI  256 (638)
Q Consensus       180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~  256 (638)
                      ....+.|++++|++.-..+-...+.   +......+-..+....+.+.....-....+   ....+|..+...+-..|++
T Consensus        56 h~~yq~gd~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~  132 (966)
T KOG4626|consen   56 HRLYQGGDYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL  132 (966)
T ss_pred             HHHHhccCHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence            3344567777777766555444433   233333344556666666654443322222   2346789999999999999


Q ss_pred             HHHHHHHHHHHHcCccC-ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchh-hHHHHHHHHHhcCChHHHHHHHh
Q 006627          257 NEGVRLFAEMIEENVFP-SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLA-MANALVDMYGKCREIRSARTLFD  334 (638)
Q Consensus       257 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~  334 (638)
                      ++|+++++.+.+.  +| ....|..+..++...|+.+.|.+.|.+.++.+  |+.. ...-+...+...|++.+|...|.
T Consensus       133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence            9999999999985  45 45678889999999999999999999888754  4332 23344555566899999999988


Q ss_pred             cCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 006627          335 GMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD  410 (638)
Q Consensus       335 ~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  410 (638)
                      +...  | =.+.|+.|...|-.+|+...|+..|++....  .|+ ...|..|-..|...+.++.|...+.+..... +..
T Consensus       209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~  285 (966)
T KOG4626|consen  209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH  285 (966)
T ss_pred             HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence            7664  3 2467999999999999999999999998753  454 3478888889999999999999998887765 566


Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHH
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAI--YRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNA  486 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~  486 (638)
                      ...+..+...|...|.++-|+..|++..  +|+ +..|+.|..++...|++.+|...+.+....  .|+. ...+.|...
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni  363 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI  363 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence            7888888889999999999999999877  443 469999999999999999999999998875  5554 688999999


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~  563 (638)
                      +...|.+++|..+|.+..+   +.|. ....+.|...|..+|++++|+..++++ .++|. ..++..+.+.|...|+.+.
T Consensus       364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~  440 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA  440 (966)
T ss_pred             HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence            9999999999999999975   4555 367889999999999999999999998 78887 6889999999999999999


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      |.+.+.+++..+|.-+.++..|+.+|-..|+..+|++-++...+-.
T Consensus       441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999886543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.5e-18  Score=169.82  Aligned_cols=516  Identities=12%  Similarity=0.042  Sum_probs=299.9

Q ss_pred             cccCchHHHHHHHHHHHhC--CCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHH---HhC---CCch
Q 006627           83 QVLMTHLGKEIHGFAIKNG--LDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGY---HRG---GLPE  154 (638)
Q Consensus        83 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~---~~~---~~~~  154 (638)
                      ..+++..|..+|...+...  .+||+.+  .+-..+.+.|+.+.|...|....+-|+...++++...   ...   ..+.
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~  253 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK  253 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence            3345555555555544332  1223221  1122334555555555555554443332222222111   111   1233


Q ss_pred             HHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 006627          155 EALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNR  234 (638)
Q Consensus       155 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  234 (638)
                      .+..++...-... .-++...+.|-..|.-.|++..+..+...+.........-...|-.+.++|...|+++.|...|..
T Consensus       254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3444443333221 234445555566666666666666666666655433222334455666667777777777766655


Q ss_pred             cCC--CC--cccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccC----ChhhHHHHHHHHHHhcC
Q 006627          235 LNQ--NS--VVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVG----GLQLGKWLHAYILRNGF  306 (638)
Q Consensus       235 ~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~  306 (638)
                      ...  ++  +..+--+...+++.|+++.+...|+..... .+-+..|...+...|+..+    ..+.|..++....+.- 
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-  410 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-  410 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence            543  22  233445566666777777777777666654 2233345555555555443    2233333333333322 


Q ss_pred             CCchhhHHHHHHHHHhcCChHHHHHHHhcC--------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CcCCC
Q 006627          307 EFSLAMANALVDMYGKCREIRSARTLFDGM--------KSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS---KVRPN  375 (638)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~  375 (638)
                      +.|...|..+...+... ++..++..|...        ....+...|.+...+...|++.+|...|......   ...++
T Consensus       411 ~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d  489 (1018)
T KOG2002|consen  411 PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD  489 (1018)
T ss_pred             cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence            34455555555554433 222223333222        1234556777777778888888888888776543   12222


Q ss_pred             hh------hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHH
Q 006627          376 EV------TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWN  446 (638)
Q Consensus       376 ~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~  446 (638)
                      ..      +-..+....-..++.+.|.+.+..+.+.. |.-+..|-.+..+....++..+|..++..+.   +.++..+.
T Consensus       490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars  568 (1018)
T KOG2002|consen  490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS  568 (1018)
T ss_pred             ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence            21      12233344555667888888888877753 2223344444433344567778888887665   44666777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc------------cCcHHHHHHHHHHHhhhcCCCCCh
Q 006627          447 AMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNACSH------------AGLVTEGKSVFDKMVHGLGLVPKI  513 (638)
Q Consensus       447 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~  513 (638)
                      .+...+.....+..|.+-|+...+. ...+|..+...|...|.+            .+..++|++.|.++++  ..+.|.
T Consensus       569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~  646 (1018)
T KOG2002|consen  569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM  646 (1018)
T ss_pred             HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence            7777777777777777766665543 123566666666665532            2345678888887776  455677


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC--CCCcchHHHHHHHH
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSMP--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE--PQNYGYNVLMSNIY  589 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~  589 (638)
                      ..-+-++-+++..|++.+|..+|.+..  ......+|..+...|...|++..|++.|+.+.+..  -+++.+...|+.++
T Consensus       647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~  726 (1018)
T KOG2002|consen  647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW  726 (1018)
T ss_pred             hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            778888888999999999999998872  22356788888899999999999999999998732  34678889999999


Q ss_pred             HhcCCHHHHHHHHHHHhh
Q 006627          590 AVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~  607 (638)
                      ++.|+|.+|.+++.....
T Consensus       727 y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  727 YEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHhhhHHHHHHHHHHHHH
Confidence            999999999998776654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=6.6e-18  Score=169.27  Aligned_cols=573  Identities=12%  Similarity=0.038  Sum_probs=409.4

Q ss_pred             hhHHHHhhhhh--hcHH----HHHHHH--HhCCCchhHHHHHHHHHHCC--CCCCcccHHHHHHHHHcccCchHHHHHHH
Q 006627           26 KFSYTNIINPL--TRYN----SLVTSY--IKNNKPSSALNIYAFMRKNG--SEVDNFTIPTILKACAQVLMTHLGKEIHG   95 (638)
Q Consensus        26 ~~~A~~~~~~~--~~~~----~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   95 (638)
                      .+.|.+.|.-+  .+..    .|..++  ...+++..|+.+|.......  .+||..  -.+-.++.+.++.+.|...|.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence            58888888877  2222    233333  35789999999999976643  344443  233456678899999999999


Q ss_pred             HHHHhCCCCChhHHHHHHHhhhcCC---ChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCc
Q 006627           96 FAIKNGLDGDAYVSNALIQMYSECG---SLVSARYLFDEMP---NRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIR  169 (638)
Q Consensus        96 ~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (638)
                      ...+.+ |-++.++-.|--.-....   .+..+...+...-   ..|+...+.|...|...|+++.++.+...+......
T Consensus       224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~  302 (1018)
T KOG2002|consen  224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN  302 (1018)
T ss_pred             HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence            999875 233333333322222223   3444455544332   257888999999999999999999999988765311


Q ss_pred             --CCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--CC-cccHH
Q 006627          170 --PSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--NS-VVSWT  244 (638)
Q Consensus       170 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~  244 (638)
                        .-...|-.+-+++-..|+++.|...+....+.....  ....+..+...|.+.|+++.+...|+.+..  || ..+..
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~  380 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK  380 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence              224468888999999999999999999888876654  456677889999999999999999999875  33 34555


Q ss_pred             HHHHHHHhCC----ChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH----HHHhcCCCchhhHHHH
Q 006627          245 VMISGYIRCN----EINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY----ILRNGFEFSLAMANAL  316 (638)
Q Consensus       245 ~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l  316 (638)
                      .+...|...+    ..+.|..++.+..+.- +-|...|..+-..+.. ++.......+..    +...+-++.+.+.|.+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv  458 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV  458 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence            5555555554    4566777766665542 3355566555555544 333333555554    4456667888999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCC-------Cc------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHH
Q 006627          317 VDMYGKCREIRSARTLFDGMKSK-------DV------MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGL  382 (638)
Q Consensus       317 ~~~~~~~~~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l  382 (638)
                      ...+...|++..|...|++....       +.      .+--.+...+-..++++.|.+.|..+...  .|+-. .|..+
T Consensus       459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl  536 (1018)
T KOG2002|consen  459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL  536 (1018)
T ss_pred             HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence            99999999999999999876532       22      12223445556677899999999998775  45443 33344


Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-----CCCchhHHHHHHHHHh---
Q 006627          383 LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI-----YRDICMWNAMMAGYGM---  454 (638)
Q Consensus       383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~---  454 (638)
                      .......++..+|...+......+ ..++..++.+...+.+...+..|.+-|..+.     .+|+.+.-.|...+.+   
T Consensus       537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            333344578888888888888765 6677777778888888888888877554433     3355555555554432   


Q ss_pred             ---------cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          455 ---------HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       455 ---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                               .+..++|+++|.+.+... +-|...-+-+.-+++..|++.+|..+|....+.  ......+|-.+..+|..
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVE  692 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHH
Confidence                     245678999999988764 556677778888889999999999999999884  33345577889999999


Q ss_pred             cCChHHHHHHHHhC----CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-----------
Q 006627          526 AGLLDEAHEMIKSM----PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA-----------  590 (638)
Q Consensus       526 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----------  590 (638)
                      +|++-.|++.|+..    ....++.....|..++...|.+.+|...+..+..+.|.++...+.++-+..           
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k  772 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK  772 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence            99999999999876    223468888999999999999999999999999999999888777765543           


Q ss_pred             --------hcCCHHHHHHHHHHHhhcCCc
Q 006627          591 --------VANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       591 --------~~g~~~~A~~~~~~~~~~~~~  611 (638)
                              ..+..+.|.++|..|.+.+.+
T Consensus       773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  773 RTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                    345677888888888776554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=5.9e-20  Score=184.23  Aligned_cols=293  Identities=13%  Similarity=0.071  Sum_probs=207.5

Q ss_pred             HHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC---hhhHHHHHHHHhccCchH
Q 006627          320 YGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN---EVTMVGLLSLCTEAGALE  393 (638)
Q Consensus       320 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~  393 (638)
                      +...|++++|...|.++.+.   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34455666666666655432   233455566666666666666666666655321111   133455556666666777


Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc--------hhHHHHHHHHHhcCChHHHHHHH
Q 006627          394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI--------CMWNAMMAGYGMHGCGEEALIFF  465 (638)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~  465 (638)
                      .|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+.        ..+..+...+...|++++|...+
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            7776666666543 44555666666777777777777777666542211        13455667778889999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627          466 VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN  544 (638)
Q Consensus       466 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  544 (638)
                      +++.+.. +.+...+..+...+.+.|++++|.++++++.+. .-......+..++.+|...|++++|.+.++++ ...|+
T Consensus       204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9988763 334567888888999999999999999999863 21122456788899999999999999999988 55777


Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCcCCCCe
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV---ANRWNDVAGVRRVMKEIRVKKEPGF  616 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~  616 (638)
                      ...+..++..+...|++++|...++++++..|++.... .+...+..   .|+.++|...+++|.+++++++|.+
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            77778888999999999999999999999999976444 44444432   5699999999999999999999974

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=5.2e-18  Score=178.15  Aligned_cols=371  Identities=10%  Similarity=-0.038  Sum_probs=270.8

Q ss_pred             HhcCChHHHHHHHhccCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627          220 SKCGNLAYAKQLFNRLNQ------NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL  293 (638)
Q Consensus       220 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  293 (638)
                      .+..+++...-.|..-.+      .+..-...++..+.+.|++++|..+++........+ ......+..+....|+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence            345555555555555443      122345567778888999999999999888864443 3334445566667899999


Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006627          294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVS  370 (638)
Q Consensus       294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  370 (638)
                      |...++.+.+.. |.+...+..+...+...|++++|...+++...  | +...+..+...+...|++++|...++.+...
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            999999888765 44566778888888999999999999988764  3 4567788888899999999999999887654


Q ss_pred             CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHH
Q 006627          371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNA  447 (638)
Q Consensus       371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~  447 (638)
                      .  |+.......+..+...|++++|...++.+.+....++......+...+...|++++|...+++...   .+...+..
T Consensus       174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~  251 (656)
T PRK15174        174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS  251 (656)
T ss_pred             C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3  333222222334678899999999998887764334444555566788889999999999987662   25567778


Q ss_pred             HHHHHHhcCChHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          448 MMAGYGMHGCGEE----ALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       448 l~~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      +...+...|++++    |...+++..+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+..++
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l  328 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            8888899998885    788999888763 335578888888999999999999999998862  333456677788889


Q ss_pred             HhcCChHHHHHHHHhC-CCCCCHhh-HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          524 GRAGLLDEAHEMIKSM-PLRPNMIV-WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      .+.|++++|...++++ ...|+... +..+..++...|+.++|...++++++.+|++.            ..+|++|...
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~  396 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA  396 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence            9999999999999887 45565433 33456677889999999999999999999864            2444556666


Q ss_pred             HHHHhhcC
Q 006627          602 RRVMKEIR  609 (638)
Q Consensus       602 ~~~~~~~~  609 (638)
                      +....+.-
T Consensus       397 ~~~~~~~~  404 (656)
T PRK15174        397 LDGQISAV  404 (656)
T ss_pred             HHHHHHhc
Confidence            66555433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=1e-17  Score=175.97  Aligned_cols=356  Identities=10%  Similarity=-0.048  Sum_probs=280.1

Q ss_pred             HhCCChHHHHHHHHHHHHcC--ccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHH
Q 006627          251 IRCNEINEGVRLFAEMIEEN--VFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRS  328 (638)
Q Consensus       251 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (638)
                      .+..+|+...-+|..-.++.  -.-+......++..+.+.|+.+.|..+++........+ ......++......|++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence            34556665555554433220  11223345567778889999999999999998876444 4445556677778999999


Q ss_pred             HHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627          329 ARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ  405 (638)
Q Consensus       329 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  405 (638)
                      |...++++..  | +...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+...
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            9999999864  3 55678888899999999999999999988652 334556778888999999999999999988776


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 006627          406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI  481 (638)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~  481 (638)
                      . +.+...+..+ ..+...|++++|...++.+...    +...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus       174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~  250 (656)
T PRK15174        174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR  250 (656)
T ss_pred             C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            5 3333344333 3478899999999999987643    23344556778889999999999999999864 44567888


Q ss_pred             HHHHHHhccCcHHH----HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHH
Q 006627          482 GLLNACSHAGLVTE----GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAAS  555 (638)
Q Consensus       482 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~  555 (638)
                      .+...+...|++++    |...++++.+  -.+.+...+..+...+...|++++|...++++ ...|+ ...+..+..++
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            89999999999986    8999999986  33445678889999999999999999999988 45564 56777888999


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                      ...|++++|+..++++.+.+|+++..+..++.++...|++++|+..|++..+..+...
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999999999999999887777889999999999999999999877665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=5.3e-17  Score=174.42  Aligned_cols=387  Identities=10%  Similarity=0.038  Sum_probs=218.0

Q ss_pred             HHHHHHhcCChHHHHHHHhccCC-C--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCC-hHhHHHHHHHhcccCC
Q 006627          215 LIDMYSKCGNLAYAKQLFNRLNQ-N--SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPS-EITILSLIIECGFVGG  290 (638)
Q Consensus       215 l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~  290 (638)
                      .+....-.|+.++|++++..... .  +...+..+...+...|++++|.++|++..+.  .|+ ......+...+...|+
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~   98 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ   98 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence            33444444555555544444432 1  1122444444455555555555555554442  122 2233334444444555


Q ss_pred             hhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          291 LQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHM  367 (638)
Q Consensus       291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m  367 (638)
                      .++|...++.+.+.. +.+.. +..+...+...|+.++|...++++.+.   +...+..+...+...+..++|++.++..
T Consensus        99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049         99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            555555555544442 22233 444555555555555555555554421   2233344444555555555555555443


Q ss_pred             HHcCcCCCh------hhHHHHHHHH-----hccCch---HHHHHHHHHHHHh-CCCCccc-HHH-H---HHHHHHhcCCH
Q 006627          368 KVSKVRPNE------VTMVGLLSLC-----TEAGAL---EMGKWLHTYIEKQ-GLEVDVI-LKT-A---LVDMYAKCGDV  427 (638)
Q Consensus       368 ~~~g~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-~---l~~~~~~~~~~  427 (638)
                      ..   .|+.      .....++...     ...+++   +.|...++.+.+. ...|+.. .+. .   .+.++...|++
T Consensus       177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~  253 (765)
T PRK10049        177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY  253 (765)
T ss_pred             CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence            32   1211      0011111111     111223   5566666666643 1122221 111 1   12234556778


Q ss_pred             HHHHHHHHcCCCCC---ch-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCcHHHHHH
Q 006627          428 NGAYRLFSEAIYRD---IC-MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN-----GITFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       428 ~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~  498 (638)
                      ++|+..|+.+...+   +. ....+...+...|++++|+..|+++.+..  |.     ......+..++...|++++|.+
T Consensus       254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~  331 (765)
T PRK10049        254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT  331 (765)
T ss_pred             HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            88888887776432   11 12224567778888888888888876542  22     2345566667788888888888


Q ss_pred             HHHHHhhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHH
Q 006627          499 VFDKMVHGLG----------LVPK---IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       499 ~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~  563 (638)
                      +++.+.+...          -.|+   ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++
T Consensus       332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~  411 (765)
T PRK10049        332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA  411 (765)
T ss_pred             HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            8888775310          0122   123455677888889999999998887 3344 56777888888888899999


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |++.++++++++|++...+..++.++...|++++|+.+++.+.+..+
T Consensus       412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            99999999999999888888999999999999999999888876543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=1.3e-16  Score=171.46  Aligned_cols=367  Identities=11%  Similarity=0.009  Sum_probs=243.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHh
Q 006627          209 VAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIEC  285 (638)
Q Consensus       209 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  285 (638)
                      ...+..+...+...|++++|..+|+...+   .+...+..+...+...|++++|...+++..+.  .|+...+..+...+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l  126 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVY  126 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            33445555555555666666555555332   22334445555566666666666666666554  22222254555555


Q ss_pred             cccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch--------hHHHHHHHHH-----
Q 006627          286 GFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM--------IWNAVISAYA-----  352 (638)
Q Consensus       286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----  352 (638)
                      ...|+.+.|...++.+.+.. +.+...+..+...+...+..+.|...++.... ++.        ....++....     
T Consensus       127 ~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccC
Confidence            56666666666666666553 22444445566667777777878877776664 211        1112222221     


Q ss_pred             hcCCH---HHHHHHHHHHHHc-CcCCChh-hHH----HHHHHHhccCchHHHHHHHHHHHHhCCC-CcccHHHHHHHHHH
Q 006627          353 QAHCI---DKAFELFIHMKVS-KVRPNEV-TMV----GLLSLCTEAGALEMGKWLHTYIEKQGLE-VDVILKTALVDMYA  422 (638)
Q Consensus       353 ~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~  422 (638)
                      ..+++   ++|++.++.+... ...|+.. .+.    ..+.++...|+.++|+..|+.+.+.+.+ |+ .....+..+|.
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl  283 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL  283 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence            12233   6788888888754 2233322 111    1133455778999999999999887522 22 12233577899


Q ss_pred             hcCCHHHHHHHHHcCCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCcH---HHHH
Q 006627          423 KCGDVNGAYRLFSEAIYRD-------ICMWNAMMAGYGMHGCGEEALIFFVDMERSG-----------VKPNG---ITFI  481 (638)
Q Consensus       423 ~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~~---~~~~  481 (638)
                      ..|++++|+..|+++...+       ......+..++...|++++|..+++++.+..           -.|+.   ..+.
T Consensus       284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            9999999999998876332       2345556678889999999999999988752           11332   3456


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcC
Q 006627          482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHK  559 (638)
Q Consensus       482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~  559 (638)
                      .+...+...|++++|++.++++..  ..+.+...+..+...+...|++++|++.++++ ...|+ ...+......+...|
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~  441 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ  441 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            677788899999999999999987  45566788889999999999999999999998 56675 566677777888999


Q ss_pred             ChHHHHHHHHHHhccCCCCcchH
Q 006627          560 NPSMGEIAATQILEIEPQNYGYN  582 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~  582 (638)
                      ++++|+..++++++..|+++.+.
T Consensus       442 ~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        442 EWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999987544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=9.9e-18  Score=168.14  Aligned_cols=294  Identities=14%  Similarity=0.106  Sum_probs=187.3

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCh
Q 006627          247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREI  326 (638)
Q Consensus       247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  326 (638)
                      ...+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++..               
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------  105 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------  105 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---------------
Confidence            334556677777777777777652 1223345445555555555555555555544422111000               


Q ss_pred             HHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627          327 RSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQG  406 (638)
Q Consensus       327 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  406 (638)
                                   ....+..+...|...|++++|..+|+++.+.. +++..++..+...+...|++++|.+.++.+.+.+
T Consensus       106 -------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        106 -------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             -------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence                         01234455556666666666666666665431 2344455566666666666666666666665543


Q ss_pred             CCCc----ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627          407 LEVD----VILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT  479 (638)
Q Consensus       407 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  479 (638)
                      ..+.    ...+..+...+.+.|++++|...++++.+  | +...+..+...+.+.|++++|.++++++.+.+......+
T Consensus       172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  251 (389)
T PRK11788        172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV  251 (389)
T ss_pred             CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence            2111    11334556666777777777777776552  2 344666777888888888888888888887532222456


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhh-
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKL-  557 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-  557 (638)
                      +..++.+|...|++++|...++++.+.   .|+...+..++..+.+.|++++|..+++++ ...|+...+..++..+.. 
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~  328 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE  328 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence            778888888899999999999988753   466666778888888999999999998876 567888888777766553 


Q ss_pred             --cCChHHHHHHHHHHhc
Q 006627          558 --HKNPSMGEIAATQILE  573 (638)
Q Consensus       558 --~~~~~~A~~~~~~~~~  573 (638)
                        .|+.+++...++++++
T Consensus       329 ~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        329 AEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             cCCccchhHHHHHHHHHH
Confidence              4577888888877765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=8.1e-16  Score=161.80  Aligned_cols=437  Identities=12%  Similarity=0.044  Sum_probs=292.0

Q ss_pred             HHcccCchHHHHHHHHHHHhCCCCC-hhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc-hHHHH--HHHHHhCCCchHH
Q 006627           81 CAQVLMTHLGKEIHGFAIKNGLDGD-AYVSNALIQMYSECGSLVSARYLFDEMPNRDVV-SWSTM--IRGYHRGGLPEEA  156 (638)
Q Consensus        81 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a  156 (638)
                      ..+.|+++.|...|++..+.. +-+ +.++ .++..+...|+.++|+..+++...|+.. .+..+  ...+...|++++|
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            456777778888887777664 222 2333 6777777778888888887777765433 33333  3456666888888


Q ss_pred             HHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccC
Q 006627          157 LEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLN  236 (638)
Q Consensus       157 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  236 (638)
                      +++|+++.+.  .|+                                    ++.++..++..+...++.++|++.++.+.
T Consensus       122 iely~kaL~~--dP~------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574        122 LALWQSSLKK--DPT------------------------------------NPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             HHHHHHHHhh--CCC------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            8888877763  455                                    56666777888888899999999998888


Q ss_pred             C--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC-ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhH
Q 006627          237 Q--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP-SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMA  313 (638)
Q Consensus       237 ~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  313 (638)
                      .  |+...+..++..+...++..+|++.++++.+.  .| +...+..+..+..+.|-...|.++...      .|+..+-
T Consensus       164 ~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~  235 (822)
T PRK14574        164 ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSA  235 (822)
T ss_pred             ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCH
Confidence            6  44334433333333356665699999999886  34 344556666666677766666655543      1211111


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CcCCChh-hHH----HHHH
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC---IDKAFELFIHMKVS-KVRPNEV-TMV----GLLS  384 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~  384 (638)
                      .....     =+.+.|.+..+-...++.          ....+   .+.|+.-++.+... +..|... .|.    -.+-
T Consensus       236 ~~~~~-----l~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~  300 (822)
T PRK14574        236 EHYRQ-----LERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG  300 (822)
T ss_pred             HHHHH-----HHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence            10000     011112222211110000          00112   34455555554431 2223322 221    3345


Q ss_pred             HHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---------chhHHHHHHHHHhc
Q 006627          385 LCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRD---------ICMWNAMMAGYGMH  455 (638)
Q Consensus       385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~  455 (638)
                      ++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+|+++..++         ......|.-++...
T Consensus       301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~  380 (822)
T PRK14574        301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES  380 (822)
T ss_pred             HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence            777888999999999999988877667788889999999999999999998875322         22346788889999


Q ss_pred             CChHHHHHHHHHHHHcCC-----------CCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          456 GCGEEALIFFVDMERSGV-----------KPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      +++++|..+++.+.+.-.           .||+   ..+..++..+...|++.+|++.++++..  .-+-|......+..
T Consensus       381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~  458 (822)
T PRK14574        381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALAS  458 (822)
T ss_pred             ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            999999999999887311           1332   2345567778899999999999999976  56668888889999


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627          522 LLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN  582 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  582 (638)
                      .+...|++.+|.+.++.+ ...|+ ..+....+.++...+++++|..+.+.+.+..|+++..-
T Consensus       459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            999999999999999877 45664 56667788888899999999999999999999987544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=1.8e-16  Score=167.44  Aligned_cols=225  Identities=10%  Similarity=-0.053  Sum_probs=131.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          347 VISAYAQAHCIDKAFELFIHMKVSKVRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      +...+...|++++|+..+++....  .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus       337 lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g  413 (615)
T TIGR00990       337 RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKG  413 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            333344444444444444444332  222 2233344444444555555555555544433 334455555555666666


Q ss_pred             CHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627          426 DVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK  502 (638)
Q Consensus       426 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  502 (638)
                      ++++|...|++...  | +...+..+..++.+.|++++|+..+++..... +.+...+..+..++...|++++|.+.|++
T Consensus       414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  492 (615)
T TIGR00990       414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT  492 (615)
T ss_pred             CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            66666666655442  2 33455556666677777777777777776542 33456677777777778888888888877


Q ss_pred             HhhhcCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          503 MVHGLGLVPKI-E-------HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       503 ~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      ..+.   .|+. .       .++.....+...|++++|.++++++ ...|+ ...+..+...+.+.|++++|+..++++.
T Consensus       493 Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       493 AIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            7642   2211 1       1112222333468888888888775 44554 4567777888888888888888888888


Q ss_pred             ccCCCC
Q 006627          573 EIEPQN  578 (638)
Q Consensus       573 ~~~p~~  578 (638)
                      ++.+..
T Consensus       570 ~l~~~~  575 (615)
T TIGR00990       570 ELARTE  575 (615)
T ss_pred             HHhccH
Confidence            877753

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.5e-14  Score=132.18  Aligned_cols=430  Identities=13%  Similarity=0.099  Sum_probs=251.1

Q ss_pred             HhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH--HcccCchH-HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChh
Q 006627           47 IKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKAC--AQVLMTHL-GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLV  123 (638)
Q Consensus        47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  123 (638)
                      ..+|.++++.-+|+.|.+.|++.+...-..|++.-  .+..++.- -++.|-.|...| +.+..+|        +.|++.
T Consensus       126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA  196 (625)
T KOG4422|consen  126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA  196 (625)
T ss_pred             HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence            44566667777777777766666665555544432  22222221 122333333333 2222222        223322


Q ss_pred             HHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhcc
Q 006627          124 SARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCK  203 (638)
Q Consensus       124 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  203 (638)
                      +   ++-+....+..+|..+|.++|+--..+.|.+++++......+.+..+|+.+|.+..-..+    +.+...|.....
T Consensus       197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm  269 (625)
T KOG4422|consen  197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM  269 (625)
T ss_pred             H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence            2   333333356678888888888888888888888888777777788888777765432222    344444444444


Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH----HHHHHHHHHHHcCccCChHhHH
Q 006627          204 DEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN----EGVRLFAEMIEENVFPSEITIL  279 (638)
Q Consensus       204 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~p~~~~~~  279 (638)
                      .                                 ||..|+|+++++..+.|+++    .|.+++.+|++-|+.|...+|.
T Consensus       270 ~---------------------------------Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh  316 (625)
T KOG4422|consen  270 T---------------------------------PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH  316 (625)
T ss_pred             C---------------------------------CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence            3                                 55556666666666666544    4567888899999999999999


Q ss_pred             HHHHHhcccCChhh-HHHHHHHHHH----hcCCC----chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-----------
Q 006627          280 SLIIECGFVGGLQL-GKWLHAYILR----NGFEF----SLAMANALVDMYGKCREIRSARTLFDGMKSK-----------  339 (638)
Q Consensus       280 ~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------  339 (638)
                      .+|..+++.++..+ +..++.++..    ..++|    +...|...+..|.+..+.+-|..+-.-+...           
T Consensus       317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~  396 (625)
T KOG4422|consen  317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH  396 (625)
T ss_pred             HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence            99999888887754 3333333332    22322    3445666777788888888887776544421           


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..++|..+...|.........-+..
T Consensus       397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~  476 (625)
T KOG4422|consen  397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM  476 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            11235566677788888899999999998888889999999999999999999999999999888875444444333333


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627          420 MYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM--HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  497 (638)
                      .+++..            ..|+...-..+-....+  ..-.+.....-.+|.+...+|  ...+.++-.+.+.|..++|.
T Consensus       477 ~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~  542 (625)
T KOG4422|consen  477 LLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAW  542 (625)
T ss_pred             HHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHH
Confidence            333322            01111111111111110  111112222233444443333  33444445566777777777


Q ss_pred             HHHHHHhhhcCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhC
Q 006627          498 SVFDKMVHGLGLVPKIEHYG---CMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       498 ~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      +++..+.+++.-.|-....+   .+++.-.+.+++.+|...++-|
T Consensus       543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            77777755433334444444   3334444556666666666555

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.79  E-value=1.3e-14  Score=152.92  Aligned_cols=405  Identities=9%  Similarity=0.019  Sum_probs=194.5

Q ss_pred             hhhcCChhHHHHhhhhh------h--cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcc---cHHHHHHHHHcccCch
Q 006627           20 IIKTHFKFSYTNIINPL------T--RYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNF---TIPTILKACAQVLMTH   88 (638)
Q Consensus        20 ~~~~g~~~~A~~~~~~~------~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~   88 (638)
                      ..+.|++..|++.|+++      .  .-..++..+...|+.++|+..+++..    .|+..   ....+...+...|+++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence            33555555555555554      0  11144444555555555555555554    12111   1111123344445555


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 006627           89 LGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN--RDVVSWSTMIRGYHRGGLPEEALEVMREMRFM  166 (638)
Q Consensus        89 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (638)
                      .|.++++.+.+.. +.++.++..++..+...++.++|+..++.+..  |+...+..++..+...++..+|++.++++.+ 
T Consensus       120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~-  197 (822)
T PRK14574        120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR-  197 (822)
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence            5555555555544 33344444555555555555555555555443  2222222222222223333335555555554 


Q ss_pred             CCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccH---
Q 006627          167 DIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSW---  243 (638)
Q Consensus       167 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---  243 (638)
                                                        ..+.   +...+..+...+.+.|-...|.++...-+.  ..+-   
T Consensus       198 ----------------------------------~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~  238 (822)
T PRK14574        198 ----------------------------------LAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHY  238 (822)
T ss_pred             ----------------------------------hCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHH
Confidence                                              3332   444555555555555555555555544331  1000   


Q ss_pred             --------HHHHHHH-----HhCCC---hHHHHHHHHHHHHc-CccCChH-----hHHHHHHHhcccCChhhHHHHHHHH
Q 006627          244 --------TVMISGY-----IRCNE---INEGVRLFAEMIEE-NVFPSEI-----TILSLIIECGFVGGLQLGKWLHAYI  301 (638)
Q Consensus       244 --------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~  301 (638)
                              ..+++.-     ....+   .+.|+.-++.+... +..|...     ...-.+.++...|+...+.+.++.+
T Consensus       239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l  318 (822)
T PRK14574        239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM  318 (822)
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence                    0000000     01112   34455555555442 1223221     1223445566677777777777777


Q ss_pred             HHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 006627          302 LRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD---------VMIWNAVISAYAQAHCIDKAFELFIHMKVSKV  372 (638)
Q Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  372 (638)
                      ...+.+....+-..+.++|...+++++|..+|.++...+         ......|.-++...+++++|..+++.+...-.
T Consensus       319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p  398 (822)
T PRK14574        319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP  398 (822)
T ss_pred             hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence            777766555666777777777777777777777664321         11235566677777777777777777765210


Q ss_pred             -----------CCCh--h-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627          373 -----------RPNE--V-TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI  438 (638)
Q Consensus       373 -----------~p~~--~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  438 (638)
                                 .|++  . .+..+...+...|+..+|++.++.+.... |-|..+...+.+.+...|.+.+|+..++...
T Consensus       399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence                       1111  1 11223344445555555555555554443 4455555555555555555555555554332


Q ss_pred             --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627          439 --YR-DICMWNAMMAGYGMHGCGEEALIFFVDMER  470 (638)
Q Consensus       439 --~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  470 (638)
                        .| +..+....+.++...+++.+|..+.+.+.+
T Consensus       478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~  512 (822)
T PRK14574        478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVIS  512 (822)
T ss_pred             hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence              12 223333444444444555555555444444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=1.3e-13  Score=138.12  Aligned_cols=587  Identities=12%  Similarity=-0.005  Sum_probs=377.6

Q ss_pred             hhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHH
Q 006627           19 HIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLG   90 (638)
Q Consensus        19 ~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   90 (638)
                      .+.-.|++++|.+++.++        .+|..|-..|-..|+.+++...+-...... +-|...|..+.......|.+.+|
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence            333449999999999998        899999999999999999998777665543 55667898888888999999999


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCc--------chHHHHHHHHHhCCCchHHHHHHHH
Q 006627           91 KEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDV--------VSWSTMIRGYHRGGLPEEALEVMRE  162 (638)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~  162 (638)
                      .-.+.+.++.. |++....-.-+..|.+.|+...|..-|.++.+.++        ..--.++..+...++-+.|++.++.
T Consensus       227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999987 67777777778889999999999988887765222        1222345667777777999998888


Q ss_pred             hHHCC-CcCCHhhHHHHHHHhcccCchHHHHHHHHHHHH-------------------------hccCCCCchhH-HHHH
Q 006627          163 MRFMD-IRPSEVAMISMVSLFADVADVDLGKAIHACVVR-------------------------NCKDEKLGVAI-ATAL  215 (638)
Q Consensus       163 m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~-~~~l  215 (638)
                      ....+ -.-+..+++.+...+.....++.+.........                         .+.+..++..+ ...+
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i  385 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI  385 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence            77632 223444566666666666666666555544443                         11111112233 2222


Q ss_pred             HHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCCh
Q 006627          216 IDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGL  291 (638)
Q Consensus       216 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  291 (638)
                      .-...+.+...+++..|-....    .++..|..+..++...|++.+|+++|..+.....--+...|..+.+++-..|..
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            2233344444444443332222    345678888999999999999999999998875555667888888899999999


Q ss_pred             hhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch------------hHHHHHHHHHhcCCHHH
Q 006627          292 QLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM------------IWNAVISAYAQAHCIDK  359 (638)
Q Consensus       292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~  359 (638)
                      +.|.+.|+..+... +.+..+-..|...+.+.|+.++|.+.+..+..+|..            ........+.+.|+.++
T Consensus       466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999988764 455666778888899999999999999998766521            12233445667777666


Q ss_pred             HHHHHHHHHHcC-----c-----------------CCChhhHHHHHHHHhccCchHHHHHHHH------HHHHhCCCCcc
Q 006627          360 AFELFIHMKVSK-----V-----------------RPNEVTMVGLLSLCTEAGALEMGKWLHT------YIEKQGLEVDV  411 (638)
Q Consensus       360 a~~~~~~m~~~g-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~  411 (638)
                      =+.+...|....     +                 +-...+...++.+-.+.++.....+-..      .....++..+.
T Consensus       545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd  624 (895)
T KOG2076|consen  545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD  624 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence            544444443221     1                 1111222233333333333222222111      11122333222


Q ss_pred             --cHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----Cc----hhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCcH
Q 006627          412 --ILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DI----CMWNAMMAGYGMHGCGEEALIFFVDMERS-GV--KPNG  477 (638)
Q Consensus       412 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~--~p~~  477 (638)
                        ..+.-++..+++.+++++|+.+...+...     +.    ..-...+.+.+..+++..|...++.|... +.  .|..
T Consensus       625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q  704 (895)
T KOG2076|consen  625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ  704 (895)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence              34566777888999999999988766532     22    23345566777889999999999998865 11  2222


Q ss_pred             -HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH-HH
Q 006627          478 -ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL-AA  554 (638)
Q Consensus       478 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~  554 (638)
                       ..|+...+...+.++-.--.+++..+... .-.-++.........+..++.+..|+..+-++ ...|+.+..+..+ -+
T Consensus       705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~-~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla  783 (895)
T KOG2076|consen  705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVK-NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA  783 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence             23443444444444333333333333221 11111222223344556778888888876655 4455533333222 22


Q ss_pred             Hh----------hcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          555 SK----------LHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       555 ~~----------~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +.          ++-..-++..++++..++.-.  ...+...+|.+|-..|=..-|.++|++..+-.
T Consensus       784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~  850 (895)
T KOG2076|consen  784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS  850 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence            21          122356778888888776554  56789999999999999999999999987543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=8.9e-13  Score=127.14  Aligned_cols=506  Identities=12%  Similarity=0.026  Sum_probs=382.1

Q ss_pred             CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627           86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRF  165 (638)
Q Consensus        86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (638)
                      +...=.+++...+++ +|.++..|...+.    ..+.+.|.-++....+--+ +-.-|.-+|.+...++.|..+++..++
T Consensus       361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe  434 (913)
T KOG0495|consen  361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKARE  434 (913)
T ss_pred             HHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445566666655 3556666655443    3455667777766554111 112234456777788889999998887


Q ss_pred             CCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHH----HhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----
Q 006627          166 MDIRPSEVAMISMVSLFADVADVDLGKAIHACVV----RNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ----  237 (638)
Q Consensus       166 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----  237 (638)
                      . ++-+...|.+....--..|+.+....+.+.-+    ..|...  +...|..=...+-..|..--+..+...+..    
T Consensus       435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i--~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE  511 (913)
T KOG0495|consen  435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI--NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE  511 (913)
T ss_pred             h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence            5 66777788777777778888888777776543    345555  556666666666666666665555554432    


Q ss_pred             -C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHH
Q 006627          238 -N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANA  315 (638)
Q Consensus       238 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  315 (638)
                       . --.+|+.-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+++...... +-....+..
T Consensus       512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM  589 (913)
T KOG0495|consen  512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLM  589 (913)
T ss_pred             cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHH
Confidence             1 2257888888888899999999999888774 23345556666666666788888888888888764 344556667


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          316 LVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       316 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      ....+-..|+...|..++...-+.   +...|-.-+.......+++.|..+|.+...  ..|+...|.--+..---.++.
T Consensus       590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~  667 (913)
T KOG0495|consen  590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNV  667 (913)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhH
Confidence            777778889999999998876643   456777788888899999999999998765  467777777666666667899


Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDME  469 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~  469 (638)
                      ++|.+++++..+. ++.-...|..+.+.+.+.++++.|.+.|....+.   .+..|-.|...--+.|+...|..++++.+
T Consensus       668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            9999999888875 3555678888889999999999999999877633   56678888888888899999999999988


Q ss_pred             HcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627          470 RSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG  549 (638)
Q Consensus       470 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  549 (638)
                      -.+ +-|...|...++.-.+.|+.+.|..+..++.+  ..+.+...|..-|....+.++...+...+++...  |+....
T Consensus       747 lkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVll  821 (913)
T KOG0495|consen  747 LKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLL  821 (913)
T ss_pred             hcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHH
Confidence            775 55778899999999999999999999999987  6677778888888888888888888888887643  455666


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+...+.....++.|+..|+++++.+|++..+|..+-..+...|.-++-.+++.+.....+
T Consensus       822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            6777788888999999999999999999999999999999999999999999987755433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.77  E-value=1.2e-13  Score=138.21  Aligned_cols=594  Identities=10%  Similarity=0.018  Sum_probs=407.2

Q ss_pred             cccCCcchHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccH
Q 006627            3 IKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTI   74 (638)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   74 (638)
                      ||..+.+..-|..|...|-.+|+.++|...+-.+        .-|..+-....+.|++..|.-.|.+.++.. |++...+
T Consensus       166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~  244 (895)
T KOG2076|consen  166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELI  244 (895)
T ss_pred             HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHH
Confidence            5667668899999999999999999999987766        788888889999999999999999999986 5666666


Q ss_pred             HHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHH----HHHHHhhhcCCChhHHHHHhccCCC-----CCcchHHHHHH
Q 006627           75 PTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVS----NALIQMYSECGSLVSARYLFDEMPN-----RDVVSWSTMIR  145 (638)
Q Consensus        75 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~  145 (638)
                      -.-...|-+.|+...|...|.++.....+.|..-.    -..++.+...++-+.|.+.++....     -+...++.++.
T Consensus       245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae  324 (895)
T KOG2076|consen  245 YERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAE  324 (895)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence            66677889999999999999999988643333333    2345667777878889888877654     35567899999


Q ss_pred             HHHhCCCchHHHHHHHHhHHCCCcCCHhhH--------------------------HHHHHHhcccCchHHHHHHHHHHH
Q 006627          146 GYHRGGLPEEALEVMREMRFMDIRPSEVAM--------------------------ISMVSLFADVADVDLGKAIHACVV  199 (638)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--------------------------~~ll~~~~~~~~~~~a~~~~~~~~  199 (638)
                      .+.+...++.+......+......+|...+                          ..+.-++.+....+....+.....
T Consensus       325 l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~  404 (895)
T KOG2076|consen  325 LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV  404 (895)
T ss_pred             HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH
Confidence            999999999999999888762222222211                          133445567777777788888888


Q ss_pred             HhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627          200 RNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE  275 (638)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  275 (638)
                      .....+.-++..+.-+..++...|++.+|.++|..+..    .+...|-.+..+|...|..++|.+.|+.....  .|+.
T Consensus       405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~  482 (895)
T KOG2076|consen  405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDN  482 (895)
T ss_pred             HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCc
Confidence            77755544788999999999999999999999999875    45678999999999999999999999999874  4543


Q ss_pred             -HhHHHHHHHhcccCChhhHHHHHHHHH--------HhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-------
Q 006627          276 -ITILSLIIECGFVGGLQLGKWLHAYIL--------RNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-------  339 (638)
Q Consensus       276 -~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------  339 (638)
                       ..-.+|-..+-+.|+.++|.+.+..+.        ..+..|+..+.......+...|+.++=..+-..|..+       
T Consensus       483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~  562 (895)
T KOG2076|consen  483 LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI  562 (895)
T ss_pred             hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence             334455666778999999999998843        3345666777777778888888887755443333211       


Q ss_pred             -------------------CchhHHHHHHHHHhcCCHHHHHHH------HHHHHHcCcCCCh--hhHHHHHHHHhccCch
Q 006627          340 -------------------DVMIWNAVISAYAQAHCIDKAFEL------FIHMKVSKVRPNE--VTMVGLLSLCTEAGAL  392 (638)
Q Consensus       340 -------------------~~~~~~~li~~~~~~~~~~~a~~~------~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~  392 (638)
                                         +.......+.+-.+.++.....+-      +..-...|+..+.  ..+.-++.++++.+++
T Consensus       563 f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~  642 (895)
T KOG2076|consen  563 FPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRV  642 (895)
T ss_pred             cchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhH
Confidence                               111222233333333332211111      1111122222222  2345567788999999


Q ss_pred             HHHHHHHHHHHHhCC--CCcc---cHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----Cc---hhHHHHHHHHHhcCChH
Q 006627          393 EMGKWLHTYIEKQGL--EVDV---ILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DI---CMWNAMMAGYGMHGCGE  459 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~  459 (638)
                      ++|..+...+.....  .++.   ..-...+.+....+++..|...++.+...     ++   ..||..++.+.+.++-.
T Consensus       643 qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v  722 (895)
T KOG2076|consen  643 QEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRV  722 (895)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999888776432  1111   23344566677889999999999887744     33   46665555555555443


Q ss_pred             HHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHH-HHHHHH----------hc
Q 006627          460 EALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC-MVDLLG----------RA  526 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~----------~~  526 (638)
                      --...+......  +|+.  ..+..........+.+..|+..+-++..   ..|+....+. ++-++.          |.
T Consensus       723 ~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh  797 (895)
T KOG2076|consen  723 CYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRH  797 (895)
T ss_pred             HHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333444333322  3333  2222223334567888999988877764   3455434332 222221          11


Q ss_pred             CChHHHHHHHHhC-C-CCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc------------chHHHHHHHHH
Q 006627          527 GLLDEAHEMIKSM-P-LRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY------------GYNVLMSNIYA  590 (638)
Q Consensus       527 g~~~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~l~~~~~  590 (638)
                      -..-++..++.+. . -.+  ...++..++.+|...|=.--|...|+++++..|.+.            .+-..|.-+|.
T Consensus       798 ~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~  877 (895)
T KOG2076|consen  798 AQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYK  877 (895)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhc
Confidence            1233455555444 1 122  467788899999999999999999999999876421            22345667899


Q ss_pred             hcCCHHHHHHHHHH
Q 006627          591 VANRWNDVAGVRRV  604 (638)
Q Consensus       591 ~~g~~~~A~~~~~~  604 (638)
                      ..|+...|.+++++
T Consensus       878 ~SGn~~lArqil~k  891 (895)
T KOG2076|consen  878 KSGNMQLARQILEK  891 (895)
T ss_pred             cCCcHHHHHHHHHh
Confidence            99999999998874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.76  E-value=8e-13  Score=127.44  Aligned_cols=536  Identities=10%  Similarity=0.027  Sum_probs=384.4

Q ss_pred             CchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhc
Q 006627           51 KPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFD  130 (638)
Q Consensus        51 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  130 (638)
                      +..+|.-++...++.+ |-++..|-+-.+.--..|.+..|..+...--+.- +.+..+|.--+    +....+.|..+..
T Consensus       266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vvA  339 (913)
T KOG0495|consen  266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVVA  339 (913)
T ss_pred             HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHHH
Confidence            4555666666666554 3344445444444444555555555544443332 33444443332    2233444544444


Q ss_pred             cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchh
Q 006627          131 EMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVA  210 (638)
Q Consensus       131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  210 (638)
                      ......+.+-..-+.+---..+...=..++++..+.  .|+.+.   |=.+.....+.+.|+.++...++..+..     
T Consensus       340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAveccp~s-----  409 (913)
T KOG0495|consen  340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECCPQS-----  409 (913)
T ss_pred             HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhccch-----
Confidence            333322222111122222222333344566666553  344432   2244445566667888888888887764     


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHH----HHHcCccCChHhHHHHHH
Q 006627          211 IATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAE----MIEENVFPSEITILSLII  283 (638)
Q Consensus       211 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~  283 (638)
                        .-|.-++.+..-++.|..+++...+   .+...|.+-...--.+|+.+...++++.    +...|+..+...|..=..
T Consensus       410 --~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe  487 (913)
T KOG0495|consen  410 --MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE  487 (913)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence              3445556667778889888877665   5666777666666678999988888765    456799999999998889


Q ss_pred             HhcccCChhhHHHHHHHHHHhcCCCc--hhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHH
Q 006627          284 ECGFVGGLQLGKWLHAYILRNGFEFS--LAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCID  358 (638)
Q Consensus       284 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~  358 (638)
                      .|...|..-.+..+....+..|+.-.  ..++..-...|.+.+.++-|..+|....+-   +...|...+..--..|..+
T Consensus       488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence            99999999999999999998887543  467888889999999999999999887643   5567777777667788899


Q ss_pred             HHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627          359 KAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI  438 (638)
Q Consensus       359 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  438 (638)
                      ....+|++.... ++-....+.......-..|++..|..++..+.+.. +.+..++-+-+........++.|..+|.+..
T Consensus       568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence            999999998765 23344455555566667899999999999999887 6688899999999999999999999998765


Q ss_pred             --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627          439 --YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH  515 (638)
Q Consensus       439 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~  515 (638)
                        .+....|.--+....-.++.++|.+++++.++.  -|+- ..|..+.+.+.+.++.+.|.+.|..-.+  ..+-.+..
T Consensus       646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipL  721 (913)
T KOG0495|consen  646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPL  721 (913)
T ss_pred             ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchH
Confidence              567778877777777789999999999998876  5666 5788888899999999999999987765  45556677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----------------
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----------------  577 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----------------  577 (638)
                      |-.|...=.+.|.+-.|..++++.  ..+-+...|...+..-.+.|+.++|.....++++--|.                
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~  801 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ  801 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence            777888888899999999999998  33346889999999999999999999999888775443                


Q ss_pred             --------------CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          578 --------------NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       578 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                                    |+.+....+..++...++++|++.|.+..+.++
T Consensus       802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence                          456666778888899999999999987755443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.5e-15  Score=139.54  Aligned_cols=475  Identities=10%  Similarity=0.032  Sum_probs=295.0

Q ss_pred             HHHHHcccCchHHHHHHHHHHHhCCCCChhHH-HHHHHhhhcCCChhHHHHHhccCCC--CC------cchHHHHHHHHH
Q 006627           78 LKACAQVLMTHLGKEIHGFAIKNGLDGDAYVS-NALIQMYSECGSLVSARYLFDEMPN--RD------VVSWSTMIRGYH  148 (638)
Q Consensus        78 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~  148 (638)
                      .+-|.....+.+|...++.+.+...-|+.-.. -.+-..+.+...+..|++.++....  |+      +...+.+...+.
T Consensus       208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi  287 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI  287 (840)
T ss_pred             HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence            34455556677777777777776655554433 2344566677777777777654432  21      123333444566


Q ss_pred             hCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHH
Q 006627          149 RGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYA  228 (638)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  228 (638)
                      +.|+++.|+..|+...+.  .|+..+-..++-++...|+.++.++.|..++.....+  |..-       |.        
T Consensus       288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~--dddk-------yi--------  348 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEI--DDDK-------YI--------  348 (840)
T ss_pred             ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCC--Cccc-------cc--------
Confidence            778888888888776663  5777766666666667777777777777776654333  1110       00        


Q ss_pred             HHHHhccCCCCcccH-----HHHHHHHHhCC--ChHHHHHHHHHHHHcCccCChHh-HHHHHHHhcccCChhhHHHHHHH
Q 006627          229 KQLFNRLNQNSVVSW-----TVMISGYIRCN--EINEGVRLFAEMIEENVFPSEIT-ILSLIIECGFVGGLQLGKWLHAY  300 (638)
Q Consensus       229 ~~~~~~~~~~~~~~~-----~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~  300 (638)
                          ..-..|+....     +..++-+-+.+  +.++++-.-.++..--+.||-.. |...+...-.....+.|.     
T Consensus       349 ----~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~-----  419 (840)
T KOG2003|consen  349 ----KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI-----  419 (840)
T ss_pred             ----CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh-----
Confidence                00001111111     11111111111  11122211122222222333211 111111111111111111     


Q ss_pred             HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHH----HH-HHHHh-cCCHHHHHHHHHHHHHcCcCC
Q 006627          301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNA----VI-SAYAQ-AHCIDKAFELFIHMKVSKVRP  374 (638)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----li-~~~~~-~~~~~~a~~~~~~m~~~g~~p  374 (638)
                                ..-..-...+.+.|+++.|.+++.-..+.|..+-.+    |- --|.+ ..++..|.+.-+...... +-
T Consensus       420 ----------dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ry  488 (840)
T KOG2003|consen  420 ----------DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RY  488 (840)
T ss_pred             ----------hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-cc
Confidence                      111122335678899999998888777665443222    21 12222 234566655554433221 11


Q ss_pred             ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCchhHHHHHHH
Q 006627          375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA---IYRDICMWNAMMAG  451 (638)
Q Consensus       375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~  451 (638)
                      +....+.--+.....|+++.|.+.+++.....-......|+ +.-.+...|++++|++.|-++   ...+....-.+...
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            22222222233445789999999999998766444444443 344567789999999998654   35677777788888


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE  531 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  531 (638)
                      |-...+..+|++++-+.... ++.|+.....|...|-+.|+-..|.+.+-+--+  -++-+.++..-|..-|....-+++
T Consensus       568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ek  644 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEK  644 (840)
T ss_pred             HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHH
Confidence            98899999999999776654 455678899999999999999999998777654  567788999989999999999999


Q ss_pred             HHHHHHhC-CCCCCHhhHHHHHHHHh-hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          532 AHEMIKSM-PLRPNMIVWGALLAASK-LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       532 A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      |+.+|+++ -++|+..-|..++..|. +.|++..|...|+......|++...+-.|..+....|-.
T Consensus       645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            99999998 58899999998887775 579999999999999999999999999999998888743

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.1e-14  Score=131.28  Aligned_cols=310  Identities=14%  Similarity=0.146  Sum_probs=231.3

Q ss_pred             chHhhhhHHHhhhhcCChhHHHHhhhhh---------hc---HHHHHHHHHhCCCchhHHHHHHHHHHCC----------
Q 006627            9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---------TR---YNSLVTSYIKNNKPSSALNIYAFMRKNG----------   66 (638)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~----------   66 (638)
                      .+++-|.|+++- .+|.++++.-+++.|         ..   .-.|+..|-.++-+-.-++.|-.|...|          
T Consensus       115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G  193 (625)
T KOG4422|consen  115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG  193 (625)
T ss_pred             hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence            566778888765 778999999999888         11   1222222222222222233333332221          


Q ss_pred             ---------CCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC----
Q 006627           67 ---------SEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP----  133 (638)
Q Consensus        67 ---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----  133 (638)
                               .+....|+..+|.++++-...+.|.+++++......+.+..++|.+|.+-.-..+    .+++.+|.    
T Consensus       194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm  269 (625)
T KOG4422|consen  194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM  269 (625)
T ss_pred             cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence                     2456679999999999999999999999998877778999999999987654444    44555554    


Q ss_pred             CCCcchHHHHHHHHHhCCCchH----HHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchH-HHHHHHHHHHHh------c
Q 006627          134 NRDVVSWSTMIRGYHRGGLPEE----ALEVMREMRFMDIRPSEVAMISMVSLFADVADVD-LGKAIHACVVRN------C  202 (638)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~------~  202 (638)
                      .||..|+|+++.+..+.|+++.    |++++.+|++-|+.|...+|..+|..+++.++.. .+..++..+...      .
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            4999999999999999998764    5678899999999999999999999999988874 355555555432      1


Q ss_pred             cCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--------CC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 006627          203 KDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--------NS---VVSWTVMISGYIRCNEINEGVRLFAEMIEENV  271 (638)
Q Consensus       203 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  271 (638)
                      +..+.+...+...+..|....+.+-|.++-.-...        ++   ..-|..+....++....+....+|+.|..+-+
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence            22233556778888888899999999887765543        11   23466778888889999999999999999989


Q ss_pred             cCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhc
Q 006627          272 FPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKC  323 (638)
Q Consensus       272 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  323 (638)
                      .|+..+...++++....|.++-.-+++.++...|.........-++..+++.
T Consensus       430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~  481 (625)
T KOG4422|consen  430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD  481 (625)
T ss_pred             cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999988666655555555555443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=4.5e-14  Score=129.98  Aligned_cols=437  Identities=10%  Similarity=0.049  Sum_probs=287.1

Q ss_pred             HHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHH-HHHHhcccCchHHHHHHHHHHHHhccCCCCchh----HHHHHHH
Q 006627          143 MIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMIS-MVSLFADVADVDLGKAIHACVVRNCKDEKLGVA----IATALID  217 (638)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~l~~  217 (638)
                      |..-|..+....+|+..|+-..+....|+....-. +-..+.+.+++.+|...+...++.-+..  +..    +.+.+.-
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi--nk~~rikil~nigv  284 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI--NKDMRIKILNNIGV  284 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--chhhHHHHHhhcCe
Confidence            34555666677888988888888777777554322 2234456667778888888777766555  332    3344444


Q ss_pred             HHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhH--------HHHHHHhcc
Q 006627          218 MYSKCGNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI--------LSLIIECGF  287 (638)
Q Consensus       218 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~ll~~~~~  287 (638)
                      .+.+.|+++.|...|+...+  |+..+--.|+-++..-|+-++..+.|.+|..--..||..-|        ..++.-..+
T Consensus       285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~  364 (840)
T KOG2003|consen  285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK  364 (840)
T ss_pred             eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence            56677888888888877664  66554444455555677778888888888765444444433        011111000


Q ss_pred             cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHH----HHHhcCCCCCch-------------hH------
Q 006627          288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSAR----TLFDGMKSKDVM-------------IW------  344 (638)
Q Consensus       288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~-------------~~------  344 (638)
                      .       ..++.|.+.+                 ..+.++++    ++..-+..++..             .+      
T Consensus       365 n-------d~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d  420 (840)
T KOG2003|consen  365 N-------DHLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID  420 (840)
T ss_pred             h-------HHHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence            0       0111111111                 00111111    111111122110             01      


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH--HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006627          345 --NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG--LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDM  420 (638)
Q Consensus       345 --~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  420 (638)
                        -.-...+.+.|+++.|+++++-+....-+.-...-+.  .+..+....++..|.++-+...... .-+....+.-...
T Consensus       421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~  499 (840)
T KOG2003|consen  421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI  499 (840)
T ss_pred             hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence              1112357889999999999998876543322222222  2222223446777777777665543 2333333333333


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCchhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627          421 YAKCGDVNGAYRLFSEAIYRDICMWNAMMA---GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       421 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  497 (638)
                      ....|++++|.+.|++....|...-.+|..   .+-..|+.++|++.|-++..- +..+......+...|....+...|+
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            455799999999999999888765555543   456789999999999887653 2456678888889999999999999


Q ss_pred             HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      +++.....  -++.|+.+...|...|-+.|+..+|.+..-+. . ++.+..+...|...|....=.++|+..|+++.-+.
T Consensus       579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq  656 (840)
T KOG2003|consen  579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ  656 (840)
T ss_pred             HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            99998875  56678899999999999999999999976444 4 34467777777777777777899999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      |+...+...++.++.+.|+|.+|.++++....+-
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            9988888899999999999999999999887543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.9e-13  Score=127.31  Aligned_cols=212  Identities=15%  Similarity=0.084  Sum_probs=167.1

Q ss_pred             ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHH
Q 006627          388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIF  464 (638)
Q Consensus       388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~  464 (638)
                      -.|+.-.+..-++..++.. +-+...|-.+..+|....+.++-...|++..   ..|+.+|..-.+.+.-.+++++|..=
T Consensus       338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            3577777888888887765 3333336677777888888888888887765   34677888777778888899999999


Q ss_pred             HHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 006627          465 FVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR  542 (638)
Q Consensus       465 ~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  542 (638)
                      |++.+..  .| +...|..+.-+.-+.+.++++...|++.++  .++.-++.|+.....+..++++++|.+.++.. .+.
T Consensus       417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9998865  44 345666666666788899999999999998  56666788888999999999999999999887 344


Q ss_pred             CC---------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          543 PN---------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       543 p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      |.         +.....++.... .+++..|+.+++++++++|....+|..|+.+..+.|+.++|+++|++-
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            43         223333333333 389999999999999999999999999999999999999999999875

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.68  E-value=6.1e-13  Score=132.62  Aligned_cols=534  Identities=10%  Similarity=-0.025  Sum_probs=286.2

Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCC
Q 006627           57 NIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRD  136 (638)
Q Consensus        57 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  136 (638)
                      .++-.+...|+.|+..||..++..|+..|+.+.|- +|..|.-.+.+.+..+++.++....+.++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            56778889999999999999999999999999999 9999998888889999999999999999887765       688


Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHhH-------HCCCcCCHhhHHHHHHHhc--------------ccCchHHHHHHH
Q 006627          137 VVSWSTMIRGYHRGGLPEEALEVMREMR-------FMDIRPSEVAMISMVSLFA--------------DVADVDLGKAIH  195 (638)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~~t~~~ll~~~~--------------~~~~~~~a~~~~  195 (638)
                      ..+|..|..+|.+.||...-..+=+.|.       ..|+.....-+-..+.++-              ..|.++.+.+++
T Consensus        83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll  162 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL  162 (1088)
T ss_pred             hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999765222222122       1222211112212222221              122222222222


Q ss_pred             HHHHHhccCCCCchhHHHHHHHHHHh-cCChHHHHHHHhccCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC
Q 006627          196 ACVVRNCKDEKLGVAIATALIDMYSK-CGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP  273 (638)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  273 (638)
                      ..+.......   +...  +++-... ...+++-........+ ++..+|..++++-..+|+.+.|..++.+|+++|++.
T Consensus       163 ~~~Pvsa~~~---p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  163 AKVPVSAWNA---PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             hhCCcccccc---hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            2221111111   1111  1222222 2233444444444444 888999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 006627          274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQ  353 (638)
Q Consensus       274 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~  353 (638)
                      +.+-|..++-+   .++...+..+++.|.+.|+.|+..|+.-.+-.+..+|....+.+..+.-.--....+..+.++...
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a  314 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA  314 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence            99988888876   888999999999999999999999998887777776653332222111110111222233222111


Q ss_pred             cCCH-----HHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcC
Q 006627          354 AHCI-----DKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL---EVDVILKTALVDMYAKCG  425 (638)
Q Consensus       354 ~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~  425 (638)
                      ..+.     .-....+.+..-.|+......|..... ....|.-+..+++...+..-..   +.++..|..++.-|.+.-
T Consensus       315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~  393 (1088)
T KOG4318|consen  315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI  393 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence            1111     112222222222333333333332222 2235666666666665543211   122333444444333321


Q ss_pred             CHHHHHHHHH--cCCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-------cHHHHHHHHHHHhcc
Q 006627          426 DVNGAYRLFS--EAIYR--DICMWNAMMAGYGMHGCGEEALIFFVDMER----SGVKP-------NGITFIGLLNACSHA  490 (638)
Q Consensus       426 ~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-------~~~~~~~l~~~~~~~  490 (638)
                      +-.-....+.  .....  +...-..+.....+. +...+++-+..+..    .-..|       -...-+.++..|++.
T Consensus       394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se  472 (1088)
T KOG4318|consen  394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE  472 (1088)
T ss_pred             HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence            1100000000  00000  000000000000000 11111111111100    00011       011223333444444


Q ss_pred             CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHhhHHHHHHHHhhcCChHHHH
Q 006627          491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP-----LRPNMIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       491 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      -+..++...-++.... -+ |  ..|..|++.+....+.+.|..+.++..     ..-+..-+..+.....+.+....+.
T Consensus       473 ~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~  548 (1088)
T KOG4318|consen  473 YNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS  548 (1088)
T ss_pred             HHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence            4444444333333221 11 1  456666666666677777777666652     1223334445555556666666666


Q ss_pred             HHHHHHhc---cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627          566 IAATQILE---IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       566 ~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  612 (638)
                      .++++..+   ..|.-+.....+.+.....|+.+.-.+.++-+...|+.-
T Consensus       549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            66666554   223333445555566666677777666666666665544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=1.5e-16  Score=150.74  Aligned_cols=255  Identities=16%  Similarity=0.103  Sum_probs=111.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD  426 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  426 (638)
                      ...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+ +-++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            455566777777777775443332233333333 33345555677777777777777655 3355566666666 67788


Q ss_pred             HHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          427 VNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       427 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                      +++|.+++....  .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888887776653  3456667777788888889999999988877532 2456677888888999999999999999999


Q ss_pred             hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch
Q 006627          504 VHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY  581 (638)
Q Consensus       504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  581 (638)
                      .+.  .+.+......++..+...|+.+++.++++..  ..+.++..|..+..++...|++++|...++++.+.+|+|+.+
T Consensus       173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~  250 (280)
T PF13429_consen  173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW  250 (280)
T ss_dssp             HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence            863  3335778888999999999999988888776  124466778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          582 NVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       582 ~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ...++.++...|+.++|.++++++.
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999999999999988764

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.64  E-value=7.3e-12  Score=125.10  Aligned_cols=584  Identities=12%  Similarity=0.039  Sum_probs=317.5

Q ss_pred             CCc-chHhhhhHHHhhhhcCChhHHHHhhhhh---------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHH
Q 006627            6 GFL-NLEQTRQCHAHIIKTHFKFSYTNIINPL---------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIP   75 (638)
Q Consensus         6 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   75 (638)
                      |.. |-.+|..||.-|+..|+++.|- +|.-|         ..++.++.++.+.++.+.+.           .|.+.||.
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt   87 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT   87 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence            444 8899999999999999999999 88777         77888888888888877776           68888999


Q ss_pred             HHHHHHHcccCchHHHHHHHHHH-------HhCCC-CChhH-------------HHHHHHhhhcCCChhHHHHHhccCC-
Q 006627           76 TILKACAQVLMTHLGKEIHGFAI-------KNGLD-GDAYV-------------SNALIQMYSECGSLVSARYLFDEMP-  133 (638)
Q Consensus        76 ~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~-  133 (638)
                      .|+.+|...||......+-+.+.       .+|+. |....             -...+....-.|-++.+++++..++ 
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv  167 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV  167 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999988765332222122       22211 10000             0111222222233444444442222 


Q ss_pred             ---------------------------------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHH
Q 006627          134 ---------------------------------NRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVS  180 (638)
Q Consensus       134 ---------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~  180 (638)
                                                       .++..+|..++.+-..+|+.+.|..++.+|++.|++.+..-|-.++-
T Consensus       168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~  247 (1088)
T KOG4318|consen  168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL  247 (1088)
T ss_pred             ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence                                             15677888888888888888888888888888888888776666665


Q ss_pred             HhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH---
Q 006627          181 LFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN---  257 (638)
Q Consensus       181 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~---  257 (638)
                      +   .++...+..++..|...|..+  +..++.--+..+.+.|....+....+.-..-....+..+.++.....+.+   
T Consensus       248 g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl  322 (1088)
T KOG4318|consen  248 G---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNL  322 (1088)
T ss_pred             c---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHH
Confidence            5   777778888888888888877  77777666655555444222221111000000011111111100000000   


Q ss_pred             --HHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcC---CCchhhHHHHHHHHHh----------
Q 006627          258 --EGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGF---EFSLAMANALVDMYGK----------  322 (638)
Q Consensus       258 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~----------  322 (638)
                        -....+.+..-.|+.....+|...... ...|.-+.+.++-..+..-..   ..++..+..++.-|.+          
T Consensus       323 ~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i  401 (1088)
T KOG4318|consen  323 RKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRI  401 (1088)
T ss_pred             HHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence              001111111111222122222221111 112333333333322221100   0011112111221111          


Q ss_pred             ------------cCChHHHHHHHhcCCCC-------------------C--------chhHHHHHHHHHhcCCHHHHHHH
Q 006627          323 ------------CREIRSARTLFDGMKSK-------------------D--------VMIWNAVISAYAQAHCIDKAFEL  363 (638)
Q Consensus       323 ------------~~~~~~A~~~~~~~~~~-------------------~--------~~~~~~li~~~~~~~~~~~a~~~  363 (638)
                                  ..+.....+......+.                   +        ...-+.++..++..-+..+++..
T Consensus       402 ~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~  481 (1088)
T KOG4318|consen  402 YYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCD  481 (1088)
T ss_pred             HHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        11112222222111110                   0        01223445555555555555544


Q ss_pred             HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-
Q 006627          364 FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ--GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-  440 (638)
Q Consensus       364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  440 (638)
                      -+.....-+ |  ..|..++.-++.....+.|..+.++....  .+..|..-+..+.+.+.+.+...++..++.++.+. 
T Consensus       482 ~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a  558 (1088)
T KOG4318|consen  482 EEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSA  558 (1088)
T ss_pred             HHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHh
Confidence            433332211 1  56788888888888888888888877543  23456677788888888888888888888776632 


Q ss_pred             -C----chhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------------------------CCCcHHHHHHHHH
Q 006627          441 -D----ICMWNAMMAGYGMHGCGEEALIFFVDMERSG------------------------------VKPNGITFIGLLN  485 (638)
Q Consensus       441 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------------------------------~~p~~~~~~~l~~  485 (638)
                       +    ..++-.++......|+.+...++.+-+...|                              .+|.+.....+.+
T Consensus       559 ~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcr  638 (1088)
T KOG4318|consen  559 ENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCR  638 (1088)
T ss_pred             hCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHH
Confidence             1    1222333444444555554444444433322                              2333322222222


Q ss_pred             H---------------------HhccCcHHHHHHHHHHHhhhcCC---------------CC---------ChhHHHHHH
Q 006627          486 A---------------------CSHAGLVTEGKSVFDKMVHGLGL---------------VP---------KIEHYGCMV  520 (638)
Q Consensus       486 ~---------------------~~~~~~~~~a~~~~~~~~~~~~~---------------~p---------~~~~~~~l~  520 (638)
                      .                     |.+.|++.+|.++.+-    .|+               .|         +......|+
T Consensus       639 lv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL  714 (1088)
T KOG4318|consen  639 LVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLL  714 (1088)
T ss_pred             HHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCccccccCccccHHHHHHHHhHhHHHHHHH
Confidence            2                     2233333333332221    011               00         011233467


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 006627          521 DLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANR  594 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~  594 (638)
                      ..|.+.|+++.|..++.+++..|+..+...+...+.+..   +..++....+++.+..|.   ....+...+.+..+-..
T Consensus       715 ~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~q  794 (1088)
T KOG4318|consen  715 QSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQ  794 (1088)
T ss_pred             HHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHH
Confidence            788999999999999999998888888888877765433   567777777777775554   44455666666667677


Q ss_pred             HHHHHHHHHHHhhcCCcCCC
Q 006627          595 WNDVAGVRRVMKEIRVKKEP  614 (638)
Q Consensus       595 ~~~A~~~~~~~~~~~~~~~~  614 (638)
                      .+.|.+.|.+..++.+..+.
T Consensus       795 kkaAkk~f~r~eeq~~v~ta  814 (1088)
T KOG4318|consen  795 KKAAKKCFERLEEQLTVSTA  814 (1088)
T ss_pred             HHHHHHHHHHHHHccCCCcH
Confidence            77899999999887655443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.62  E-value=3.8e-10  Score=109.22  Aligned_cols=528  Identities=12%  Similarity=0.125  Sum_probs=277.5

Q ss_pred             hhHHHhhhhcCChhHHHHhhhhh----------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 006627           14 RQCHAHIIKTHFKFSYTNIINPL----------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQ   83 (638)
Q Consensus        14 ~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   83 (638)
                      -.-+..+.++|++..-+..|+..          +.|...+.-....+-++-++.+|++.++.    ++..-..-+..+..
T Consensus       106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~  181 (835)
T KOG2047|consen  106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK  181 (835)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence            33445555666666666666654          56666666666666666666666666543    22224455555666


Q ss_pred             ccCchHHHHHHHHHHHhC------CCCChhHHHHHHHhhhcCCC---hhHHHHHhccCCC--CC--cchHHHHHHHHHhC
Q 006627           84 VLMTHLGKEIHGFAIKNG------LDGDAYVSNALIQMYSECGS---LVSARYLFDEMPN--RD--VVSWSTMIRGYHRG  150 (638)
Q Consensus        84 ~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~  150 (638)
                      .+++++|.+.+.......      -+.+-..|..+.....+.-+   --....+++.+..  +|  ...|+.|...|.+.
T Consensus       182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~  261 (835)
T KOG2047|consen  182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS  261 (835)
T ss_pred             ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence            666666666665553211      13344455555544443321   1122233333332  22  23577777777777


Q ss_pred             CCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627          151 GLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ  230 (638)
Q Consensus       151 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  230 (638)
                      |.+++|.++|++..+.  ..+..-|..+.++|+...+...+..+- .....+....              ..-+++....
T Consensus       262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e--------------d~~dl~~~~a  324 (835)
T KOG2047|consen  262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE--------------DDVDLELHMA  324 (835)
T ss_pred             hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh--------------hhhhHHHHHH
Confidence            7777777777776653  334455566666655433222221111 0000111110              0011222223


Q ss_pred             HHhccCCC---------------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHH
Q 006627          231 LFNRLNQN---------------SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGK  295 (638)
Q Consensus       231 ~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  295 (638)
                      -|+.+...               ++..|..-+.  +..|+..+-...|.+.... +.|-..                   
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka-------------------  382 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA-------------------  382 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC-------------------
Confidence            33332221               1112222111  1234444444444444332 111110                   


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch-------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006627          296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM-------IWNAVISAYAQAHCIDKAFELFIHMK  368 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~  368 (638)
                                .-.-...+..+.+.|-..|+++.|..+|++..+-+-.       +|......-.+..+++.|++++++..
T Consensus       383 ----------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~  452 (835)
T KOG2047|consen  383 ----------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT  452 (835)
T ss_pred             ----------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence                      0001124556666666777777777777766543222       33333444445566667777666553


Q ss_pred             HcCc-----------------CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 006627          369 VSKV-----------------RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAY  431 (638)
Q Consensus       369 ~~g~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  431 (638)
                      ..--                 .-+...|...++.-...|-++....+++.+.+..+ .++.+.....-.+....-++++.
T Consensus       453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesF  531 (835)
T KOG2047|consen  453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESF  531 (835)
T ss_pred             cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHH
Confidence            2211                 11223344455555566788888888998888764 33333333334455666789999


Q ss_pred             HHHHcCC----CCCc-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH--HhccCcHHHHHHHHH
Q 006627          432 RLFSEAI----YRDI-CMWNAMMAGYGM---HGCGEEALIFFVDMERSGVKPNGITFIGLLNA--CSHAGLVTEGKSVFD  501 (638)
Q Consensus       432 ~~~~~~~----~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~  501 (638)
                      ++|++.+    -|++ ..|+..+.-+.+   ....+.|..+|++.++ |++|...-+..|+.+  -.+-|....|+.+++
T Consensus       532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye  610 (835)
T KOG2047|consen  532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE  610 (835)
T ss_pred             HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999866    3343 467776665544   2378999999999998 777766433333332  235688889999999


Q ss_pred             HHhhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHH---HHHHHHhhcCChHHHHHHHHHHhcc-
Q 006627          502 KMVHGLGLVPKI--EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWG---ALLAASKLHKNPSMGEIAATQILEI-  574 (638)
Q Consensus       502 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~-  574 (638)
                      ++..  ++++..  .+|+..|.-....=-......+++++ ..-|+...-.   .....-.+.|..+.|+.++...-++ 
T Consensus       611 rat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~  688 (835)
T KOG2047|consen  611 RATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC  688 (835)
T ss_pred             HHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence            9876  555543  56776665333222233334444443 2234433322   2223345678888888888877774 


Q ss_pred             CCC-CcchHHHHHHHHHhcCCHHHH
Q 006627          575 EPQ-NYGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       575 ~p~-~~~~~~~l~~~~~~~g~~~~A  598 (638)
                      +|. +...|...-.--.+.|+-+--
T Consensus       689 dPr~~~~fW~twk~FEvrHGnedT~  713 (835)
T KOG2047|consen  689 DPRVTTEFWDTWKEFEVRHGNEDTY  713 (835)
T ss_pred             CCcCChHHHHHHHHHHHhcCCHHHH
Confidence            443 556677777777777774433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=9.5e-11  Score=109.18  Aligned_cols=458  Identities=11%  Similarity=0.047  Sum_probs=229.8

Q ss_pred             CChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHh-hHHHHH
Q 006627          104 GDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEV-AMISMV  179 (638)
Q Consensus       104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll  179 (638)
                      .+...|-...+--...+++..|..+|+....   .+...|--.+..=.++..+..|..+++.....  -|-.. .|---+
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~  148 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence            3444455555555566778888888887665   55667777777778888888888888887763  34322 111111


Q ss_pred             HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 006627          180 SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEG  259 (638)
Q Consensus       180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  259 (638)
                      -.=-..|++..|+++|....+-.                                   |+...|++.|+.-.+...++.|
T Consensus       149 ymEE~LgNi~gaRqiferW~~w~-----------------------------------P~eqaW~sfI~fElRykeiera  193 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWMEWE-----------------------------------PDEQAWLSFIKFELRYKEIERA  193 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHcCC-----------------------------------CcHHHHHHHHHHHHHhhHHHHH
Confidence            11123344445555554444322                                   4444444444444444444444


Q ss_pred             HHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHh-cC-CCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 006627          260 VRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRN-GF-EFSLAMANALVDMYGKCREIRSARTLFDGMK  337 (638)
Q Consensus       260 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  337 (638)
                      ..+|+...-  +.|+..+|....+--.+.|+...+.++|+...+. |- ..+...+.+...--.++..++.|.-+|.-..
T Consensus       194 R~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl  271 (677)
T KOG1915|consen  194 RSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL  271 (677)
T ss_pred             HHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433  2344444444444444444444444444443331 10 1112222333333333444444444443222


Q ss_pred             ----CCC-chhHHHHHHHHHhcCCHH---HHHHH-----HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 006627          338 ----SKD-VMIWNAVISAYAQAHCID---KAFEL-----FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK  404 (638)
Q Consensus       338 ----~~~-~~~~~~li~~~~~~~~~~---~a~~~-----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  404 (638)
                          +.. ...|..+...--+-|+..   .++--     ++.+...+ +-|-.+|-..++.-...|+.+...++++....
T Consensus       272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa  350 (677)
T KOG1915|consen  272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA  350 (677)
T ss_pred             HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence                110 111222221111222221   11111     11111111 22333444444444455555555555555554


Q ss_pred             hCCCCcc-------cHHHHHHHH---HHhcCCHHHHHHHHHcCC---CCCchh----HHHHHHHHHhcCChHHHHHHHHH
Q 006627          405 QGLEVDV-------ILKTALVDM---YAKCGDVNGAYRLFSEAI---YRDICM----WNAMMAGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       405 ~~~~~~~-------~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~  467 (638)
                      .- ||-.       .+|--+--+   -....+.+.+.++|+...   .....|    |.....-..++.+...|.+++..
T Consensus       351 nv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~  429 (677)
T KOG1915|consen  351 NV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN  429 (677)
T ss_pred             cC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            32 3311       111111011   112345555555554433   112222    33333344456677777777766


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC---
Q 006627          468 MERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN---  544 (638)
Q Consensus       468 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---  544 (638)
                      .+  |.-|-..+|...|..-.+.++++.+..++++.++  --+-+..+|......=...|+.+.|..+|.-+-.+|.   
T Consensus       430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm  505 (677)
T KOG1915|consen  430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM  505 (677)
T ss_pred             Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence            55  5567777777777777777777777777777764  2233556666666666677777777777776643442   


Q ss_pred             -HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhh
Q 006627          545 -MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA-----VAN-----------RWNDVAGVRRVMKE  607 (638)
Q Consensus       545 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  607 (638)
                       ...|...+..-...|.++.|..+|+++++..+... +|...+.--.     ..|           ....|..+|++...
T Consensus       506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence             34455555555667777777777777777776643 5555554433     334           55666777766543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=4.4e-11  Score=111.36  Aligned_cols=397  Identities=10%  Similarity=0.073  Sum_probs=293.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhccc
Q 006627          212 ATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFV  288 (638)
Q Consensus       212 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  288 (638)
                      |..-...-...+++..|.++|++...   .++..|--.+.+-.++.....|..+++.....-...|... .-.+..--..
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~L  154 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEML  154 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHh
Confidence            33333334456677788888888775   5566777778888888888889999888877533334333 3344445567


Q ss_pred             CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 006627          289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK--SKDVMIWNAVISAYAQAHCIDKAFELFIH  366 (638)
Q Consensus       289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~  366 (638)
                      |++..|.++|+...+  ..|+...+.+.++.-.+-+.++.|.+++++..  .|++.+|--...--.+.|+...+..+|+.
T Consensus       155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            899999999988765  47899999999999999999999999999854  67888888877777888999999999988


Q ss_pred             HHHcCcCCChhhHHHHHHHH----hccCchHHHHHHHHHHHHhCCCCc--ccHHHHHHHHHHhcCCHHHHHHHH------
Q 006627          367 MKVSKVRPNEVTMVGLLSLC----TEAGALEMGKWLHTYIEKQGLEVD--VILKTALVDMYAKCGDVNGAYRLF------  434 (638)
Q Consensus       367 m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~------  434 (638)
                      ..+.  -.|...-..+..++    .+...++.|.-+++...+.= |.+  ...|......--+-|+........      
T Consensus       233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            6553  12232222333333    35677888888888887753 333  344555444444556654444332      


Q ss_pred             --HcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHH-----HHH---hccCcHHHHHHH
Q 006627          435 --SEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI--TFIGLL-----NAC---SHAGLVTEGKSV  499 (638)
Q Consensus       435 --~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~-----~~~---~~~~~~~~a~~~  499 (638)
                        +.+...   |-.+|--.++.-...|+.+...++|++.+.. ++|-..  .|...|     .+|   ....+.+.+.++
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence              223322   5567777888888889999999999999986 577331  222222     222   357889999999


Q ss_pred             HHHHhhhcCCCCChhHHHHHH----HHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627          500 FDKMVHGLGLVPKIEHYGCMV----DLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEI  574 (638)
Q Consensus       500 ~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  574 (638)
                      ++..++  -++....+|..+-    ....++.++..|.+++-.+ +..|...++...+..-.+.++++....+|++.++.
T Consensus       389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            999986  4554555555443    4446889999999999887 88999999999999999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCee
Q 006627          575 EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFS  617 (638)
Q Consensus       575 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  617 (638)
                      .|.+..+|.-.+..-...|+++.|..+|....++.....|.+-
T Consensus       467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell  509 (677)
T KOG1915|consen  467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL  509 (677)
T ss_pred             ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence            9999999999999999999999999999999988877777553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.58  E-value=2.7e-12  Score=127.30  Aligned_cols=275  Identities=8%  Similarity=0.012  Sum_probs=189.6

Q ss_pred             cCChHHHHHHHhcCCCC--CchhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH--HHHHHHhccCchHHHHH
Q 006627          323 CREIRSARTLFDGMKSK--DVMIWNAV-ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV--GLLSLCTEAGALEMGKW  397 (638)
Q Consensus       323 ~~~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~  397 (638)
                      .|+++.|++.+....+.  ++..+..+ .....+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            57777777776655432  22222222 33446777788888888777653  45543332  22456667788888888


Q ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc---h--------hHHHHHHHHHhcCChHHHHHHHH
Q 006627          398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI---C--------MWNAMMAGYGMHGCGEEALIFFV  466 (638)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~  466 (638)
                      .++.+.+.. |-++.....+...|.+.|++++|.+++..+.+...   .        .|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888777765 56667777777788888888888877776663311   1        22333333334445566666666


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 006627          467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-N  544 (638)
Q Consensus       467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  544 (638)
                      .+-.. .+.++.....+...+...|+.++|.+.+++..+   .+|+....  ++.+....++.+++++.+++. +..| |
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            65443 245677888888999999999999999988875   24454322  223334568999999998887 4455 4


Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +..+..+...+...+++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5667788899999999999999999999999985 5677899999999999999999986643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=4.1e-13  Score=130.39  Aligned_cols=277  Identities=15%  Similarity=0.038  Sum_probs=213.4

Q ss_pred             ChHHHHHHHhcCCCC--Cc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--cCCChhhHHHHHHHHhccCchHHHHH-H
Q 006627          325 EIRSARTLFDGMKSK--DV-MIWNAVISAYAQAHCIDKAFELFIHMKVSK--VRPNEVTMVGLLSLCTEAGALEMGKW-L  398 (638)
Q Consensus       325 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~-~  398 (638)
                      +..+|...|..+++.  |+ .....+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+..+-+    +-+.. +
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            467788888885532  33 344567788889999999999999887642  12245677777765432    12222 2


Q ss_pred             HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006627          399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP  475 (638)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p  475 (638)
                      -+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-|+   .+|+.+..-+.....+|.|...|+..+.  +.|
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence            33344443 67788999999999999999999999998875544   6777777778888899999999998773  345


Q ss_pred             cH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHH
Q 006627          476 NG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALL  552 (638)
Q Consensus       476 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  552 (638)
                      .. ..|.-+...|.++++++.|+-.|+++.+  -.+.+..+...++..+.+.|+.++|+++++++ ...| |+..-..-+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            44 5677788889999999999999999974  23345677888889999999999999999998 4444 555555566


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..+...+++++|.+.++++.++-|++..++.++|.+|.+.|+.+.|+.-|--+.+-.+
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            6778889999999999999999999999999999999999999999999887755433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.57  E-value=3.2e-12  Score=126.80  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             hcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627          423 KCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV  499 (638)
Q Consensus       423 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  499 (638)
                      ...+.+...++++.+.   ..++.....+...+...|+.++|.+++++..+.  +|+....  ++.+....++.+++.+.
T Consensus       241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~  316 (398)
T PRK10747        241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV  316 (398)
T ss_pred             HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence            3344455555555554   235666777777778888888888888877763  5555322  23333455888888888


Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          500 FDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      .+...+  ..+-|...+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus       317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            888876  34455566777888888888888888888887 667888887888888888888888888888887653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.1e-10  Score=108.58  Aligned_cols=254  Identities=10%  Similarity=0.037  Sum_probs=190.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC---cccHHHHHHHHHHhcC
Q 006627          349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV---DVILKTALVDMYAKCG  425 (638)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~  425 (638)
                      .++-...+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+.. |-   |..+|+.++-.-..+.
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhH
Confidence            3444555677777777777777766555555555555556778888888888888763 22   4556665543322222


Q ss_pred             CHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627          426 DVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMV  504 (638)
Q Consensus       426 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  504 (638)
                      ++.---...-.+.+-.+.|..++.+-|.-.++.++|..+|++..+.  .|.. ..|+.+..-|....+...|.+-++.++
T Consensus       314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv  391 (559)
T KOG1155|consen  314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV  391 (559)
T ss_pred             HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence            2211111112222334556666667777788899999999999876  4544 667788888999999999999999998


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627          505 HGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN  582 (638)
Q Consensus       505 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  582 (638)
                      +  -.+.|-..|..|+++|.-.+.+.-|+-+|+++ ..+| |+..|..|+..|.+.++.++|++.|.+++...-.+..++
T Consensus       392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l  469 (559)
T KOG1155|consen  392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL  469 (559)
T ss_pred             h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence            5  44557789999999999999999999999998 5666 689999999999999999999999999999887778899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          583 VLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       583 ~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ..|+++|-+.++.++|..++++-.+
T Consensus       470 ~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  470 VRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>TIGR00540 hemY_coli hemY protein

Probab=99.53  E-value=1.5e-11  Score=122.80  Aligned_cols=277  Identities=8%  Similarity=-0.055  Sum_probs=161.2

Q ss_pred             cCChHHHHHHHhcCCCC--Cc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh--hHHHHHHHHhccCchHHHHH
Q 006627          323 CREIRSARTLFDGMKSK--DV-MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV--TMVGLLSLCTEAGALEMGKW  397 (638)
Q Consensus       323 ~~~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~  397 (638)
                      .|+++.|.+.+.+..+.  ++ ..+-.......+.|+++.|.+.+.+..+.  .|+..  .-......+...|+++.|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            45555555555544322  11 11222234445556666666666665432  23332  12223445555666666666


Q ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 006627          398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWN----AMMAGYGMHGCGEEALIFFVDMER  470 (638)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~  470 (638)
                      .++.+.+.. |-++.+...+...+...|++++|.+.+....+.   +...+.    ....+....+..++..+.+..+.+
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            666666554 445555566666666666666666666555422   222121    111111222222333344444444


Q ss_pred             cCC---CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH-HHHHHH--HHHhcCChHHHHHHHHhC-CCCC
Q 006627          471 SGV---KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH-YGCMVD--LLGRAGLLDEAHEMIKSM-PLRP  543 (638)
Q Consensus       471 ~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~--~~~~~g~~~~A~~~~~~~-~~~p  543 (638)
                      ...   +.+...+..+...+...|++++|.+.+++..+.   .|+... ...++.  .....++.+++.+.+++. ...|
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            321   126677777888888888888888888888763   233221 001222  223347777888888776 4445


Q ss_pred             C-H--hhHHHHHHHHhhcCChHHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          544 N-M--IVWGALLAASKLHKNPSMGEIAAT--QILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       544 ~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      + +  ....++.+.+.+.|++++|.+.++  .+.+..|++ ..+.+++.++.+.|+.++|.++|++..
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4 3  566788899999999999999999  577788875 446699999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.1e-12  Score=127.55  Aligned_cols=244  Identities=10%  Similarity=0.073  Sum_probs=193.9

Q ss_pred             CCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHHHHH
Q 006627          355 HCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL--EVDVILKTALVDMYAKCGDVNGAYR  432 (638)
Q Consensus       355 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~  432 (638)
                      -+..+|+..|...... +.-+......+-.+|...+++++++++|+.+.+..-  --+..+|...+=.+-+    +-++.
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence            3567899999885443 233334555777899999999999999999988531  1245566665533322    11222


Q ss_pred             HH----HcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627          433 LF----SEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGL  507 (638)
Q Consensus       433 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  507 (638)
                      .+    -...+..+.+|.++..+|.-+++.+.|++.|++..+.  .| ...+|+.+..-+.....+|.|...|+.++.  
T Consensus       408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--  483 (638)
T KOG1126|consen  408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--  483 (638)
T ss_pred             HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence            22    2233457889999999999999999999999999975  56 557888888888999999999999999874  


Q ss_pred             CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH
Q 006627          508 GLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL  584 (638)
Q Consensus       508 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  584 (638)
                       +.|. -..|..++..|.++++++.|.-.|+++ .+.|. ......++..+.+.|+.++|++++++++.++|.|+..-+.
T Consensus       484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence             3443 355667788999999999999999998 67775 5666777888899999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          585 MSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       585 l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      .+.++...+++++|+..++++++-
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh
Confidence            999999999999999999999753

>TIGR00540 hemY_coli hemY protein

Probab=99.51  E-value=4.4e-11  Score=119.45  Aligned_cols=253  Identities=10%  Similarity=-0.023  Sum_probs=154.9

Q ss_pred             HHHHhcCChHHHHHHHhcCCC--CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchH
Q 006627          318 DMYGKCREIRSARTLFDGMKS--KDV--MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALE  393 (638)
Q Consensus       318 ~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  393 (638)
                      ......|+.+.|...+.+..+  |+.  ...-.....+...|+++.|...++.+.+.. +-+......+...+...|+++
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            344445555555555554321  121  122223455556666666666666666543 223344555556666666666


Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHH---H----hcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHH
Q 006627          394 MGKWLHTYIEKQGLEVDVILKTALVDMY---A----KCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALI  463 (638)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~  463 (638)
                      .+.+.+..+.+.+..+.......-..++   .    .....+...+.++....   .++..+..+...+...|+.++|.+
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~  284 (409)
T TIGR00540       205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE  284 (409)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence            6666666666665322221111111111   1    12223344445555442   367777888888888888999999


Q ss_pred             HHHHHHHcCCCCcHHH--H-HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--
Q 006627          464 FFVDMERSGVKPNGIT--F-IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKS--  538 (638)
Q Consensus       464 ~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--  538 (638)
                      .+++..+.  .||...  + ..........++.+.+.+.+++..+.....|+.....++...+.+.|++++|.+.|+.  
T Consensus       285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~  362 (409)
T TIGR00540       285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA  362 (409)
T ss_pred             HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence            98888876  344432  1 1122223445778888888888876433333326677888999999999999999994  


Q ss_pred             C-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          539 M-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       539 ~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      . ...|+...+..+...+.+.|+.++|.+++++++.
T Consensus       363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3 5678888888889999999999999999998865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.9e-10  Score=107.02  Aligned_cols=353  Identities=12%  Similarity=0.061  Sum_probs=210.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHH--HHHHHh
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITIL--SLIIEC  285 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~  285 (638)
                      |....-.....+-+.|..+.|+..|......-+..|.+-+....-..+.+.+..    ... |...|...+.  .+..++
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a~  237 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKAY  237 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHHH
Confidence            444444445556677888888888877665434444433332222222222222    111 1222222222  233345


Q ss_pred             cccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC------chhHHHHHHHHHhcCCHHH
Q 006627          286 GFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD------VMIWNAVISAYAQAHCIDK  359 (638)
Q Consensus       286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~  359 (638)
                      -...+.+++.+-.+...+.|++.+...-+....+.-...|++.|+.+|+++.+.|      ..+|+.++  |.+..+.. 
T Consensus       238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk-  314 (559)
T KOG1155|consen  238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK-  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH-
Confidence            5555777777777777888888777777777777778888899999988887653      34555544  33333222 


Q ss_pred             HHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-
Q 006627          360 AFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI-  438 (638)
Q Consensus       360 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-  438 (638)
                       +..+-+-...--+-.+.|...+.+.|+-.++.+.|..+|++..+.+ +.....++.+.+-|....+...|.+-++... 
T Consensus       315 -Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  315 -LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             -HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence             1112111111012233466666677777778888888888887766 5566677777777777777777777777655 


Q ss_pred             --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627          439 --YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHY  516 (638)
Q Consensus       439 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~  516 (638)
                        ..|-..|-.|.++|.-.+.+.=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++.|.....  .-..+...+
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l  469 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSAL  469 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHH
Confidence              3355667777777777777777777777777652 33556777777777777777777777777765  333355667


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSM-------P-LRPN-MIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ..|.+.+.+.++.++|...+.+.       + ..|. ..+..-|...+.+.+++++|.....++..
T Consensus       470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            77777777777777777766554       1 1221 12222234445556666665554444433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.4e-10  Score=108.12  Aligned_cols=263  Identities=10%  Similarity=-0.015  Sum_probs=207.2

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      ++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.- |..+.+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            44445555666778899999999999977652 5555556666667778888777777777777654 777889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627          420 MYAKCGDVNGAYRLFSEAIYRD---ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG  496 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  496 (638)
                      -|...|+..+|++.|.+...-|   ...|-.+..+|.-.|..++|+..+...-+. ++-....+-.+.--|.+.++.+.|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence            9999999999999998866443   368999999999999999999988877654 122223344555668889999999


Q ss_pred             HHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----C---CC-CHhhHHHHHHHHhhcCChHHHHHH
Q 006627          497 KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP-----L---RP-NMIVWGALLAASKLHKNPSMGEIA  567 (638)
Q Consensus       497 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~~~~~~A~~~  567 (638)
                      .++|..+..  -.+.|+...+.+.......+.+.+|..+|+...     .   .+ =..+++.|+.++.+.+.+++|+..
T Consensus       400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            999999874  334467778888888888899999999998761     1   11 234677888899999999999999


Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +++++.+.|.++.++..+|-+|...|+.+.|.+.|.+...
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999987753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.48  E-value=3.2e-13  Score=128.03  Aligned_cols=254  Identities=14%  Similarity=0.088  Sum_probs=76.7

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHH-HHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC
Q 006627          247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILS-LIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCRE  325 (638)
Q Consensus       247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (638)
                      ...+.+.|++++|+++++........|+...|.. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            3444455555555555544333321233333322 222333345555555555555443322 33344444444 45666


Q ss_pred             hHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHHHHHHHhccCchHHHHHHHHHH
Q 006627          326 IRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYI  402 (638)
Q Consensus       326 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  402 (638)
                      +++|..++...-+  +++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.+.|.+.+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666666554422  244455556666666677777776666654322 2334445555556666666667777666666


Q ss_pred             HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627          403 EKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT  479 (638)
Q Consensus       403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  479 (638)
                      .+.. |.|..+...++..+...|+.+++.++++...   ..|+..+..+..++...|++++|+..+++..... +.|+.+
T Consensus       173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~  250 (280)
T PF13429_consen  173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW  250 (280)
T ss_dssp             HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence            6654 4455566666666666666666555444332   3345555566666666666666666666666542 335555


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMV  504 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~  504 (638)
                      ...+..++...|+.++|.++.+++.
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            6666666666666666666655544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=1.3e-11  Score=114.27  Aligned_cols=198  Identities=14%  Similarity=0.020  Sum_probs=163.7

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA  486 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  486 (638)
                      ....+..+...+...|++++|.+.+++...   .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            355667778888888999999888887652   245677778888899999999999999988764 4456778888889


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A  564 (638)
                      +...|++++|.+.++++............+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999864222234456777888999999999999999887 4344 466788888999999999999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      ...++++.+..|.++..+..++.++...|++++|..+.+.+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999998988888999999999999999999999887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=2.4e-10  Score=102.62  Aligned_cols=323  Identities=12%  Similarity=0.071  Sum_probs=169.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCC--CCcccHHH-HHHHHHhCCChHHHHHHHHHHHHcCccCChHh-HHHHHHHhccc
Q 006627          213 TALIDMYSKCGNLAYAKQLFNRLNQ--NSVVSWTV-MISGYIRCNEINEGVRLFAEMIEENVFPSEIT-ILSLIIECGFV  288 (638)
Q Consensus       213 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~  288 (638)
                      .+|.......-++.+|++++.++..  |+....|. +.-+|.+..-++-+.++++--.+.  .||+.. .+.......+.
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhh
Confidence            4555555556678888888888876  44444444 345677778888888888776664  354432 23222222232


Q ss_pred             CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHh-----cCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 006627          289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGK-----CREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFEL  363 (638)
Q Consensus       289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  363 (638)
                      =+-..+++-.+.+.+.+-..     -..+.-+++     ...-+.|+.++-.+.+.-+..--.|+--|.+++++.+|..+
T Consensus       233 ~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L  307 (557)
T KOG3785|consen  233 INGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL  307 (557)
T ss_pred             hccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence            22233333333333322111     011112222     12335566655554443334444555567788888888888


Q ss_pred             HHHHHHcCcCCChhhHHHHHHH-----HhccCchHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627          364 FIHMKVSKVRPNEVTMVGLLSL-----CTEAGALEMGKWLHTYIEKQGLEVDV-ILKTALVDMYAKCGDVNGAYRLFSEA  437 (638)
Q Consensus       364 ~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~  437 (638)
                      .+++.-  ..|-......+..+     ........-|.+.|+..-.++...|. .--.++...+.-..++++++.++..+
T Consensus       308 ~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi  385 (557)
T KOG3785|consen  308 CKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI  385 (557)
T ss_pred             HhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776531  23333333333222     12223455666777666665544432 23344455555556677777766655


Q ss_pred             C----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627          438 I----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF-IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK  512 (638)
Q Consensus       438 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~  512 (638)
                      .    ..|...+ .+.++.+..|++.+|.++|-+.....++ |..+| ..|.++|.+.+.++.|..++-++    ..+.+
T Consensus       386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~----~t~~e  459 (557)
T KOG3785|consen  386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT----NTPSE  459 (557)
T ss_pred             HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc----CCchh
Confidence            4    2233332 3566777777777777777665533322 33444 34455667777777776655443    22222


Q ss_pred             hhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHH
Q 006627          513 IEHY-GCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGA  550 (638)
Q Consensus       513 ~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~  550 (638)
                      ..+. ..+..-+.+++.+--|.+.|+.+ ...|++..|..
T Consensus       460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG  499 (557)
T KOG3785|consen  460 RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG  499 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence            2222 23334555666666666666666 45666666643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=6.5e-10  Score=104.23  Aligned_cols=406  Identities=11%  Similarity=-0.029  Sum_probs=263.3

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCC-HhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627          139 SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPS-EVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID  217 (638)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (638)
                      .+-....-|.++|.+++|++.|.+..+  +.|+ +..|...-.+|...|+++.+.+--...++..+..   +..+..-..
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y---~KAl~RRA~  191 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY---VKALLRRAS  191 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH---HHHHHHHHH
Confidence            344556678888999999999998887  5777 7788888888888899888887777777665543   445555566


Q ss_pred             HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHH--------HHH-c--CccCChHhHHHHHHHhc
Q 006627          218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAE--------MIE-E--NVFPSEITILSLIIECG  286 (638)
Q Consensus       218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--~~~p~~~~~~~ll~~~~  286 (638)
                      ++-..|++++|+.=         .+-.++...|....-.--+.++++.        -.. .  .+.|+.....+.+..+-
T Consensus       192 A~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~  262 (606)
T KOG0547|consen  192 AHEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH  262 (606)
T ss_pred             HHHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence            77777888877542         1222233333322222222233322        111 1  23355444444444332


Q ss_pred             ccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHH----Hh-cCChHHHHHHHhcC-------CCC---Cch------hHH
Q 006627          287 FVGGLQLGKWLHAYILRNGFEFSLAMANALVDMY----GK-CREIRSARTLFDGM-------KSK---DVM------IWN  345 (638)
Q Consensus       287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~A~~~~~~~-------~~~---~~~------~~~  345 (638)
                      ..-.            .....+.......+...+    .. ...+..|...+.+-       .+.   |..      +..
T Consensus       263 ~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~  330 (606)
T KOG0547|consen  263 ADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL  330 (606)
T ss_pred             cccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence            1100            000000000111111111    00 01222222222211       111   111      111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      ....-+.-.|+.-.|..-|+........++. .|.-+-..|....+.+...+.|+...+.+ +.++.+|..-..++.-.+
T Consensus       331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~  408 (606)
T KOG0547|consen  331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ  408 (606)
T ss_pred             HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence            1111234568888899999988775433332 26666677889999999999999999887 778889999999999999


Q ss_pred             CHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627          426 DVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK  502 (638)
Q Consensus       426 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  502 (638)
                      ++++|..-|++...-   ++..|-.+..+..+.+++++++..|++.+.. ++.-+..|+.....+...++++.|.+.|+.
T Consensus       409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            999999999987744   4566777777777889999999999999886 455668999999999999999999999999


Q ss_pred             HhhhcCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHH
Q 006627          503 MVHGLGLVPK---------IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQI  571 (638)
Q Consensus       503 ~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  571 (638)
                      .++   +.|+         +.+-..++..-. .+++..|.++++++ .+.|. ...+.++...-.++|+.++|+++|++.
T Consensus       488 ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  488 AIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            875   3343         222222222222 38999999999998 67775 678889999999999999999999999


Q ss_pred             hccCCC
Q 006627          572 LEIEPQ  577 (638)
Q Consensus       572 ~~~~p~  577 (638)
                      ..+--.
T Consensus       564 a~lArt  569 (606)
T KOG0547|consen  564 AQLART  569 (606)
T ss_pred             HHHHHh
Confidence            876544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=9.6e-10  Score=105.15  Aligned_cols=282  Identities=12%  Similarity=-0.006  Sum_probs=217.4

Q ss_pred             cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH
Q 006627          305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG  381 (638)
Q Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  381 (638)
                      +..-+..+...-.+-+...+++.+..++.+.+.+.|+   ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|-.
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a  317 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA  317 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence            3455666677777888889999999999998876544   45555677888899988888888888765 3556678888


Q ss_pred             HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCCh
Q 006627          382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCG  458 (638)
Q Consensus       382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  458 (638)
                      +.-.|...|..++|.++|.+....+ +.=...|-.+...|.-.|.-++|+..+....+   ..-..+--+.--|.+.++.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence            8888888899999999999887654 33456788888999999999999988765431   1222222334457778999


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-CC---C-CChhHHHHHHHHHHhcCChHHHH
Q 006627          459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-GL---V-PKIEHYGCMVDLLGRAGLLDEAH  533 (638)
Q Consensus       459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~l~~~~~~~g~~~~A~  533 (638)
                      +.|.+.|.+..... +.|+..++.+.-.....+.+.+|..+|+...... .+   . ....+++.|+.++.+.+++++|+
T Consensus       397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999999988542 4455677777766777899999999999887311 11   1 13456888999999999999999


Q ss_pred             HHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          534 EMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       534 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      ..+++. ...| +..++.++.-.|...|+++.|...|.+++-+.|++..+-..|..+.
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999998 3344 7888999999999999999999999999999999977766666553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.4e-10  Score=102.94  Aligned_cols=290  Identities=13%  Similarity=0.079  Sum_probs=177.7

Q ss_pred             cCChHHHHHHHhcCCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh---hhHHHHHHHHhccCchHHHH
Q 006627          323 CREIRSARTLFDGMKSKDVMIW---NAVISAYAQAHCIDKAFELFIHMKVSKVRPNE---VTMVGLLSLCTEAGALEMGK  396 (638)
Q Consensus       323 ~~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~  396 (638)
                      ..+.++|.+.|-+|.+.|+.++   -+|.+.|-+.|..|.|+++-+.+..+.--+..   ...-.|-.-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3455666666666555444433   34555566666666666666655442111111   11223334455566666666


Q ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCch--------hHHHHHHHHHhcCChHHHHHHHHHH
Q 006627          397 WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDIC--------MWNAMMAGYGMHGCGEEALIFFVDM  468 (638)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m  468 (638)
                      .+|..+.+.+ ..-......|+..|....++++|++.-+++.+-+..        .|..|...+....+.+.|...+.+.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            6666665543 233444555666666666666666665554433222        3344555555667788888888887


Q ss_pred             HHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhh
Q 006627          469 ERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIV  547 (638)
Q Consensus       469 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  547 (638)
                      .+.+ +.....=..+.+.....|+++.|.+.|+...+. +..--+.+...|..+|...|+.++...++.++ ...+....
T Consensus       207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            7763 223334445566777888888888888888764 33334566777888888888888888888776 44555555


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627          548 WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA--VANRWNDVAGVRRVMKEIRVKKEPG  615 (638)
Q Consensus       548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~  615 (638)
                      ...+........-.+.|...+-+-+...|.-...+.++.--..  ..|++.+-...++.|....++..|.
T Consensus       285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~  354 (389)
T COG2956         285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR  354 (389)
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence            5555555555566777777777778888875444444433333  3356888888899998887777774

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.41  E-value=5.1e-09  Score=104.02  Aligned_cols=493  Identities=16%  Similarity=0.082  Sum_probs=253.0

Q ss_pred             hCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHH---cccCchHH-------------------HH----HHHHHHHhC
Q 006627           48 KNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACA---QVLMTHLG-------------------KE----IHGFAIKNG  101 (638)
Q Consensus        48 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~~  101 (638)
                      ..++.+.++.-+......+.+.+..++..+...+.   ..++.+++                   .-    .+..+....
T Consensus       239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~  318 (799)
T KOG4162|consen  239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK  318 (799)
T ss_pred             CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence            45566777777777766666666666666555432   22344443                   11    111122223


Q ss_pred             CCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHH
Q 006627          102 LDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISM  178 (638)
Q Consensus       102 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l  178 (638)
                      +.-+..+|..+.-++.+.|+++.+.+.|++...   .....|+.+...|...|.-..|..+++.-....-.|+..+--.+
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            445566666666666666666666666665443   23445666666666666666666666655443222433332222


Q ss_pred             HH-Hhc-ccCchHHHHHHHHHHHHhc--cCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCC
Q 006627          179 VS-LFA-DVADVDLGKAIHACVVRNC--KDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN  254 (638)
Q Consensus       179 l~-~~~-~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g  254 (638)
                      .. .|. +.+..+++.......+...  ......+..+..+.-+|...-.            +.+..+        -+..
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~  458 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDA  458 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHH
Confidence            22 221 3344444444444443311  1111112222222222211100            000000        0111


Q ss_pred             ChHHHHHHHHHHHHcC-ccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 006627          255 EINEGVRLFAEMIEEN-VFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF  333 (638)
Q Consensus       255 ~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (638)
                      ...++++.+++..+.+ -.|+...|  +---++-.++++.|.+..++..+.+-..+...+..|.-.+...+++.+|+.+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            2345666666665543 22332223  22234556677777777777777655666677777777777777777777776


Q ss_pred             hcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCC
Q 006627          334 DGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ--GLE  408 (638)
Q Consensus       334 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~  408 (638)
                      +.....   |-.....-+..-..-++.++++.....+...- + +...+       ...++-....+....+.-.  ...
T Consensus       537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~  607 (799)
T KOG4162|consen  537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPT  607 (799)
T ss_pred             HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhhhH-------hhhhhhhhhhhhhcccccCccccc
Confidence            654432   11111111222233455555555554443210 0 00000       0000000000110000000  000


Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--c------HHHH
Q 006627          409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--N------GITF  480 (638)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~------~~~~  480 (638)
                      ....++..+.......+..                            -..+..      +....+.|  +      ...|
T Consensus       608 ~a~s~sr~ls~l~a~~~~~----------------------------~~se~~------Lp~s~~~~~~~~~~~~~~~lw  653 (799)
T KOG4162|consen  608 DAISTSRYLSSLVASQLKS----------------------------AGSELK------LPSSTVLPGPDSLWYLLQKLW  653 (799)
T ss_pred             ccchhhHHHHHHHHhhhhh----------------------------cccccc------cCcccccCCCCchHHHHHHHH
Confidence            0111121111111100000                            000000      01001111  1      1234


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhc
Q 006627          481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLH  558 (638)
Q Consensus       481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~  558 (638)
                      ......+.+.+..++|...+.++..  -.+-....|...+..+...|.+++|.+.|..+ ...|+ +.....+...+.+.
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            4455566777778888877777754  33334566777778888889999999988877 56675 67788888899999


Q ss_pred             CChHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          559 KNPSMGEI--AATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       559 ~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      |+...|..  ++..+++++|.++.+|..+|.++.+.|+.++|.+.|+...+
T Consensus       732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            98888888  99999999999999999999999999999999999998754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=1.3e-09  Score=100.16  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 006627          253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL  332 (638)
Q Consensus       253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  332 (638)
                      .|++.+|.++...-.+.+-.| ...|..-..+.-..|+.+.+-+++.+..+.--.++..+.-+..+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466666666666655544332 2223333444445555555555555555443334444444444445555555555444


Q ss_pred             HhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006627          333 FDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK  371 (638)
Q Consensus       333 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  371 (638)
                      ++++.   ..++........+|.+.|++.....++..|.+.|
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~  217 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG  217 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence            44332   2233444444445555555555555555554444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=8.6e-10  Score=101.24  Aligned_cols=278  Identities=14%  Similarity=0.021  Sum_probs=153.3

Q ss_pred             cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC--C--chhHHHHHHHHHhcCCHHHHHHH
Q 006627          288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK--D--VMIWNAVISAYAQAHCIDKAFEL  363 (638)
Q Consensus       288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~  363 (638)
                      .|++.+|++......+.+-.| ...|..-.++--..|+.+.+-..+.+..+.  |  ....-+........|++..|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            355555555555544444222 122223334444455555555555554432  1  22233334445555555555555


Q ss_pred             HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-------ccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627          364 FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD-------VILKTALVDMYAKCGDVNGAYRLFSE  436 (638)
Q Consensus       364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~  436 (638)
                      +.++.+.+ +-+........++|.+.|++.....++..+.+.+.-.+       ..++..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            55554432 22233344445555555555555555555555544332       23344444444444444444445554


Q ss_pred             CC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627          437 AI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI  513 (638)
Q Consensus       437 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~  513 (638)
                      .+   +.++..-..++.-+.+.|+.++|.++.++..+++..|+    -...-.+.+.++...-++..++..+.++..|  
T Consensus       255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--  328 (400)
T COG3071         255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--  328 (400)
T ss_pred             ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence            44   33455555566666666677777777766666655554    1122235566666666666666666444444  


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ..+..|+..|.+.+.+.+|.+.|+.. +..|+..+|..+..++.+.|+.+.|.+..++++-
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            56667777777777777777777765 6677777777777777777777777777777664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.40  E-value=4.4e-08  Score=95.29  Aligned_cols=525  Identities=11%  Similarity=0.081  Sum_probs=295.3

Q ss_pred             hhHHHHhhhhh-hcHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCC
Q 006627           26 KFSYTNIINPL-TRYNSLVTSYIKNNKPSSALNIYAFMRKN-GSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLD  103 (638)
Q Consensus        26 ~~~A~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  103 (638)
                      ++.+.....+| +.|-.-+..+..+++.......|+..++. .+.-....|...++-....+-++.+.++++.-++.   
T Consensus        91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---  167 (835)
T KOG2047|consen   91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---  167 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---
Confidence            34455555555 66777777777777777777777776653 23334446666666666666677777777766643   


Q ss_pred             CChhHHHHHHHhhhcCCChhHHHHHhccCCCCC----------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHh
Q 006627          104 GDAYVSNALIQMYSECGSLVSARYLFDEMPNRD----------VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEV  173 (638)
Q Consensus       104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  173 (638)
                       ++..-+-.|..+++.+++++|-+.+..+...+          -..|..+-....++.+.-..+++              
T Consensus       168 -~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv--------------  232 (835)
T KOG2047|consen  168 -APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV--------------  232 (835)
T ss_pred             -CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH--------------
Confidence             33335556666677777777776666655321          12233333333322221111111              


Q ss_pred             hHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCC--CcccHHHHHHHHH
Q 006627          174 AMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQN--SVVSWTVMISGYI  251 (638)
Q Consensus       174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~  251 (638)
                                        ..++......-.+.  --..|++|.+.|.+.|+++.|..++++..+.  .+.-+..+.++|+
T Consensus       233 ------------------daiiR~gi~rftDq--~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya  292 (835)
T KOG2047|consen  233 ------------------DAIIRGGIRRFTDQ--LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA  292 (835)
T ss_pred             ------------------HHHHHhhcccCcHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence                              11111111111111  2346778888888888888888888776542  2233444444444


Q ss_pred             hCCChHHHHHHHHHHH--HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc-----------CCCchhhHHHHHH
Q 006627          252 RCNEINEGVRLFAEMI--EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG-----------FEFSLAMANALVD  318 (638)
Q Consensus       252 ~~g~~~~a~~~~~~m~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~  318 (638)
                      .-....-+..+  ++.  +.+-.-+...             ++....-|+.+...+           -+.+...+..-+.
T Consensus       293 ~FEE~~~~~~m--e~a~~~~~n~ed~~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~  357 (835)
T KOG2047|consen  293 QFEESCVAAKM--ELADEESGNEEDDVD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK  357 (835)
T ss_pred             HHHHHHHHHHH--hhhhhcccChhhhhh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence            32211111110  010  0011111111             111222222222211           1222233332222


Q ss_pred             HHHhcCChHHHHHHHhcCCC---C------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC---hhhHHHHHHHH
Q 006627          319 MYGKCREIRSARTLFDGMKS---K------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN---EVTMVGLLSLC  386 (638)
Q Consensus       319 ~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~  386 (638)
                        +..|+..+-...|.+...   |      -...|..+...|-..|+.+.|..+|++......+--   ..+|......=
T Consensus       358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE  435 (835)
T KOG2047|consen  358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME  435 (835)
T ss_pred             --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence              223555555555554432   1      224688889999999999999999998876543221   12333333444


Q ss_pred             hccCchHHHHHHHHHHHHhC-----------CCC------cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHH
Q 006627          387 TEAGALEMGKWLHTYIEKQG-----------LEV------DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMM  449 (638)
Q Consensus       387 ~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~  449 (638)
                      .+..+++.|.++.+......           .++      +..++...++.....|-++....+|+++..--+.|-.+++
T Consensus       436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~  515 (835)
T KOG2047|consen  436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII  515 (835)
T ss_pred             HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH
Confidence            56677888888777654321           111      2345555666667788888888999888755433333322


Q ss_pred             ---HHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHh---ccCcHHHHHHHHHHHhhhcCCCCChh--HHHHHH
Q 006627          450 ---AGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACS---HAGLVTEGKSVFDKMVHGLGLVPKIE--HYGCMV  520 (638)
Q Consensus       450 ---~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~  520 (638)
                         ..+-.+.-++++.+++++-+..--.|+. ..|++.+.-+.   .....+.|..+|+++.+  +.+|...  .|-...
T Consensus       516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA  593 (835)
T KOG2047|consen  516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYA  593 (835)
T ss_pred             HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence               2233455678999999886655445665 35655555443   23468999999999998  7777542  222222


Q ss_pred             HHHHhcCChHHHHHHHHhCC--CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCC
Q 006627          521 DLLGRAGLLDEAHEMIKSMP--LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG--YNVLMSNIYAVANR  594 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~  594 (638)
                      ..=.+-|....|+++++++.  .++.  ...|+..+.-....=-+..-+.+|+++++.-|++-.  .-.-.+..-.+.|.
T Consensus       594 ~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE  673 (835)
T KOG2047|consen  594 KLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE  673 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence            22345588899999999983  3332  355666654433333456678899999999998543  34456778899999


Q ss_pred             HHHHHHHHHHHhh
Q 006627          595 WNDVAGVRRVMKE  607 (638)
Q Consensus       595 ~~~A~~~~~~~~~  607 (638)
                      .+.|..++..-.+
T Consensus       674 idRARaIya~~sq  686 (835)
T KOG2047|consen  674 IDRARAIYAHGSQ  686 (835)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999885544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=1.4e-08  Score=97.96  Aligned_cols=436  Identities=9%  Similarity=0.024  Sum_probs=258.7

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC
Q 006627          144 IRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG  223 (638)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  223 (638)
                      +.-+..+|++++|.....++...+ +-+...+..-+-++...+.++.|..+...-.....    +...+-.=.-+..+.+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~----~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV----INSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh----cchhhHHHHHHHHHcc
Confidence            445567788999999999988754 33344555666677778888877754433221111    1111111223344789


Q ss_pred             ChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHH
Q 006627          224 NLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYIL  302 (638)
Q Consensus       224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~  302 (638)
                      ..|+|...++...+.+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+...    ..+    ..+.
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q  165 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQ  165 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHH
Confidence            9999999999666666667777778888999999999999999776532211 111122211111    000    0122


Q ss_pred             HhcCCCchhhHHH---HHHHHHhcCChHHHHHHHhcC--------CCCCc----------hhHHHHHHHHHhcCCHHHHH
Q 006627          303 RNGFEFSLAMANA---LVDMYGKCREIRSARTLFDGM--------KSKDV----------MIWNAVISAYAQAHCIDKAF  361 (638)
Q Consensus       303 ~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~~~~~~a~  361 (638)
                      .....| ..+|..   ..-.+...|++.+|+++++..        .+.|.          ..-..+.-.+...|+..+|.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            222222 223333   344566789999999999876        22111          12234555677889999999


Q ss_pred             HHHHHHHHcCcCCChhhHHHHH---HHHhccCchHH--HHHHHH------------HHHHhCCCCcccHHHHHHHHHHhc
Q 006627          362 ELFIHMKVSKVRPNEVTMVGLL---SLCTEAGALEM--GKWLHT------------YIEKQGLEVDVILKTALVDMYAKC  424 (638)
Q Consensus       362 ~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~  424 (638)
                      .++....... .+|........   .+...-.++..  +...++            .+.... ......-+.++..|  .
T Consensus       245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--t  320 (652)
T KOG2376|consen  245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--T  320 (652)
T ss_pred             HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--h
Confidence            9999988775 44443222221   12222111111  111111            111110 11111112333333  3


Q ss_pred             CCHHHHHHHHHcCCCCC-chhHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHH
Q 006627          425 GDVNGAYRLFSEAIYRD-ICMWNAMMAGYG--MHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSV  499 (638)
Q Consensus       425 ~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~  499 (638)
                      +..+.+.++-....... ...+.+++..+.  +...+..+.+++...-+.  .|..  ......++.....|+++.|.++
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            45566777666665333 334444444332  233577888888887765  4443  4555666778899999999999


Q ss_pred             HH--------HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcCChH
Q 006627          500 FD--------KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHKNPS  562 (638)
Q Consensus       500 ~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~  562 (638)
                      +.        .+.+   +...+.+...+...+.+.++.+-|..++.++        ...+. ..++..+...-.++|+.+
T Consensus       399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~  475 (652)
T KOG2376|consen  399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE  475 (652)
T ss_pred             HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence            99        4433   2334455666777888888777777766655        11121 234444555566789999


Q ss_pred             HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627          563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      +|...++++++.+|++......++.+|+.. +.+.|..+=+
T Consensus       476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence            999999999999999999999999998876 5666666544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=6.4e-08  Score=98.69  Aligned_cols=541  Identities=12%  Similarity=0.055  Sum_probs=292.7

Q ss_pred             hHHHhhhhcCChhHHHHhhhhh------hc------HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 006627           15 QCHAHIIKTHFKFSYTNIINPL------TR------YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACA   82 (638)
Q Consensus        15 ~l~~~~~~~g~~~~A~~~~~~~------~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   82 (638)
                      .+.+.|.+.|-...|++.+.++      ..      =..++ .|...-.++++.+.+..|...+++-+-.+...+..-|.
T Consensus       611 ~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~  689 (1666)
T KOG0985|consen  611 EIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYH  689 (1666)
T ss_pred             HHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4556777888888888888877      11      11222 33344567888888888887777766666655555555


Q ss_pred             cccCchHHHHHHHHHHHh-----------CCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC-----------------
Q 006627           83 QVLMTHLGKEIHGFAIKN-----------GLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN-----------------  134 (638)
Q Consensus        83 ~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------  134 (638)
                      ..-..+...++|+.....           ++..|+.+.-..|.+-++.|++.+.+++.++-.-                 
T Consensus       690 eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~D  769 (1666)
T KOG0985|consen  690 EQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD  769 (1666)
T ss_pred             HHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccc
Confidence            444445555555554321           3466778888888888888888888888765321                 


Q ss_pred             --C-----Ccc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCC
Q 006627          135 --R-----DVV-SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEK  206 (638)
Q Consensus       135 --~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  206 (638)
                        |     |.. ..+-|+ .|.-.++..+-+++|-+-    +.|+  -.-.++.++....-.+...+-+-..+...++. 
T Consensus       770 qlPLiiVCDRf~fVhdlv-lYLyrnn~~kyIE~yVQk----vNps--~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~-  841 (1666)
T KOG0985|consen  770 QLPLIIVCDRFDFVHDLV-LYLYRNNLQKYIEIYVQK----VNPS--RTPQVVGALLDVDCSEDFIKNLILSVRGQFPV-  841 (1666)
T ss_pred             cCceEEEecccccHHHHH-HHHHHhhHHHHHHHHHhh----cCCc--ccchhhhhhhcCCCcHHHHHHHHHHHhccCCh-
Confidence              1     111 111111 122222333333333221    1121  11112222222222222211111111111111 


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHH
Q 006627          207 LGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLII  283 (638)
Q Consensus       207 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  283 (638)
                            ..|..-.-+.++..--...++...+   .+..++|+|.+.|..+++--+..          ++-|..-=+.++.
T Consensus       842 ------deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~f----------LkeN~yYDs~vVG  905 (1666)
T KOG0985|consen  842 ------DELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERF----------LKENPYYDSKVVG  905 (1666)
T ss_pred             ------HHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHh----------cccCCcchhhHHh
Confidence                  2233333344444444444443332   34556666666665543322110          0111111112223


Q ss_pred             HhcccCChhhHHHHHHH----HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC-----------------CCCch
Q 006627          284 ECGFVGGLQLGKWLHAY----ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK-----------------SKDVM  342 (638)
Q Consensus       284 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~  342 (638)
                      -||...++..|.-.|+.    ..-.++.-....|....+.+.+..+.+--.+++.+-.                 ..|+.
T Consensus       906 kYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe  985 (1666)
T KOG0985|consen  906 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPE  985 (1666)
T ss_pred             hhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChH
Confidence            33333333222211110    0000111223344455555555555544444442211                 12555


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCc--CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc-------cH
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSKV--RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV-------IL  413 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~  413 (638)
                      ..+.-+.++...+-+.+-+++++++.-..-  .-+...-+.|+-.. -..+...+.++.+++-..+ .|+.       ..
T Consensus       986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyD-a~~ia~iai~~~L 1063 (1666)
T KOG0985|consen  986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYD-APDIAEIAIENQL 1063 (1666)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCC-chhHHHHHhhhhH
Confidence            566677788888888888888888753221  11111122222222 2223344444444443322 1111       11


Q ss_pred             HHHHHHHHH--------------hcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627          414 KTALVDMYA--------------KCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT  479 (638)
Q Consensus       414 ~~~l~~~~~--------------~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  479 (638)
                      |.--...|-              ..+.++.|.++-++..  .+..|..+..+-.+.|...+|++-|-+      ..|+..
T Consensus      1064 yEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~ 1135 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSN 1135 (1666)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHH
Confidence            111111111              1233344444433333  345799999999999999999887754      346678


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcC
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHK  559 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~  559 (638)
                      |..+++.+.+.|.|++-.+++..+.++ .-+|.+.  ..|+-+|++.++..+-.+++.    .|+..-......-|...|
T Consensus      1136 y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhh
Confidence            999999999999999999999988775 6667655  468889999999999888776    678888888899999999


Q ss_pred             ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      .++.|.-.|.        +.+.|..|+..+...|+|..|.+.-++.
T Consensus      1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999888876        4456888899999999999888776654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.6e-08  Score=93.13  Aligned_cols=271  Identities=9%  Similarity=-0.010  Sum_probs=175.5

Q ss_pred             hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627          304 NGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMI---WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV  380 (638)
Q Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  380 (638)
                      .-++-|......+...+...|+.++|+..|++...-|+.+   .....-.+.+.|+++....+...+.... .-....|.
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf  304 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF  304 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence            3456677777888888888888888888887765444332   2222334456777777777666664321 11222222


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCC
Q 006627          381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGC  457 (638)
Q Consensus       381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~  457 (638)
                      .-....-..++++.|..+-++.++.+ +.+...+-.-..++...|++++|.-.|+...  .| +..+|.-|+.+|...|+
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            22233334567777777777766654 4445555555566777788888887777654  33 66788888888888888


Q ss_pred             hHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHh-ccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 006627          458 GEEALIFFVDMERSGVKPNGITFIGLL-NACS-HAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHE  534 (638)
Q Consensus       458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~  534 (638)
                      +.+|.-.-+..... ++.+..+...+. ..|. ...--++|.+++++..   .+.|+- ...+.+...+.+.|+..+++.
T Consensus       384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            88887777665554 344555555552 3333 2233467777777765   344543 455666677778888888888


Q ss_pred             HHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          535 MIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       535 ~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      ++++. ...||....+.|.......+.+.+|...|..++.++|++..
T Consensus       460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            88776 56777777788888888888888888888888888887643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.36  E-value=4.2e-07  Score=89.00  Aligned_cols=586  Identities=11%  Similarity=0.050  Sum_probs=331.6

Q ss_pred             chHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 006627            9 NLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKA   80 (638)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   80 (638)
                      ....+..+++.| ..+.+..-+...+.+        .+....--.+...|+.++|.+....-.+.. .-+...|..+.-.
T Consensus         7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~   84 (700)
T KOG1156|consen    7 ENALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence            344555566665 444555544444444        333333334456778888887777766643 2344455555555


Q ss_pred             HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 006627           81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEAL  157 (638)
Q Consensus        81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~  157 (638)
                      +....++++|...+......+ +.|..++.-+.-.=++.|+++.....-....+   .....|..+..++.-.|+...|.
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            566678888888888888776 55667776665555666677666655554443   23457888888888889999999


Q ss_pred             HHHHHhHHCC-CcCCHhhHHHHHHHh------cccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627          158 EVMREMRFMD-IRPSEVAMISMVSLF------ADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ  230 (638)
Q Consensus       158 ~~~~~m~~~~-~~p~~~t~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  230 (638)
                      .+++...+.. -.|+...|......+      ...|..+.+.+.+......-.+   ....-..-...+.+.+++++|..
T Consensus       164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHhhHHhHHH
Confidence            9988887764 256766665544332      3455555555554443322221   22233444567778888899988


Q ss_pred             HHhccCC--CCcccHHHH-HHHHHhCCChHHHH-HHHHHHHHcCccCChHhHH-HHHHHhcccCChhhHHHHHHHHHHhc
Q 006627          231 LFNRLNQ--NSVVSWTVM-ISGYIRCNEINEGV-RLFAEMIEENVFPSEITIL-SLIIECGFVGGLQLGKWLHAYILRNG  305 (638)
Q Consensus       231 ~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~  305 (638)
                      ++..+..  ||...|... ..++.+-.+.-+++ .+|....+.  .|-...-. .=+.......-.+....++..+.+.|
T Consensus       241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            8888876  444444443 34443333333333 555555443  11111100 00111111222344455666667777


Q ss_pred             CCCchhhHHHHHHHHHhcCChHH-HHHHHhcCC--------------CCCch--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006627          306 FEFSLAMANALVDMYGKCREIRS-ARTLFDGMK--------------SKDVM--IWNAVISAYAQAHCIDKAFELFIHMK  368 (638)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~  368 (638)
                      +++-...+.++-.-=.+..=+++ +..+...+.              .|.+.  ++-.++..+-+.|+++.|...++...
T Consensus       319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI  398 (700)
T KOG1156|consen  319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI  398 (700)
T ss_pred             CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence            66533333222211000000000 111111111              12233  34457788999999999999999876


Q ss_pred             HcCcCCChh-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc-----
Q 006627          369 VSKVRPNEV-TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI-----  442 (638)
Q Consensus       369 ~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----  442 (638)
                      ..  .|+.. -|..-.+.+...|+++.|..++++..+.+ .+|..+-..-..-..+.++.++|.++.....+.+.     
T Consensus       399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~  475 (700)
T KOG1156|consen  399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN  475 (700)
T ss_pred             cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence            54  56554 34444578889999999999999999877 67777766777888899999999998876664422     


Q ss_pred             -----hhHHHH--HHHHHhcCChHHHHHHHHHHHHcC--C---CCcH----------HHHHHHHHHHhccCc-------H
Q 006627          443 -----CMWNAM--MAGYGMHGCGEEALIFFVDMERSG--V---KPNG----------ITFIGLLNACSHAGL-------V  493 (638)
Q Consensus       443 -----~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~~--~---~p~~----------~~~~~l~~~~~~~~~-------~  493 (638)
                           .+|-.+  ..+|.+.|++..|++-|......-  +   +-|-          .+|.-|+.-.-...+       .
T Consensus       476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa  555 (700)
T KOG1156|consen  476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAA  555 (700)
T ss_pred             HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHH
Confidence                 233333  346777777777776665543320  0   1222          233333332222111       2


Q ss_pred             HHHHHHHHHHhhhcCC-CCChhHHHHHH----HHHHhc-CChHHHHHHHHhC--------------CCCCCHhhHHHHHH
Q 006627          494 TEGKSVFDKMVHGLGL-VPKIEHYGCMV----DLLGRA-GLLDEAHEMIKSM--------------PLRPNMIVWGALLA  553 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~-~p~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~  553 (638)
                      ..|+++|=.|...... .+.......+-    ....++ .+-.+|.+--+.+              +..||..   .+..
T Consensus       556 ~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~ge  632 (700)
T KOG1156|consen  556 KGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGE  632 (700)
T ss_pred             HHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhh
Confidence            3456666666543100 01111111111    111111 1111121111111              2334444   2334


Q ss_pred             HHhhcCC-hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          554 ASKLHKN-PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       554 ~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      ......+ .++|...+..+...-+++...|.+-..+|.+.|.+.-|..........
T Consensus       633 kL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~  688 (700)
T KOG1156|consen  633 KLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGI  688 (700)
T ss_pred             hHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4444444 577999999999999999999999999999999999999998877543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=4.7e-11  Score=105.86  Aligned_cols=223  Identities=10%  Similarity=-0.038  Sum_probs=138.3

Q ss_pred             HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCCh
Q 006627          382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCG  458 (638)
Q Consensus       382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~  458 (638)
                      +-.+|.+.|.+.+|++.++...+.  .|-+.+|-.|.+.|.+..++..|+.++.+...  | |+....-+.+.+-..++.
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            334444555555555554444443  23444445555555555555555555555442  1 222233344445555556


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627          459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKS  538 (638)
Q Consensus       459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  538 (638)
                      ++|.++++...+.. +.+......+...|...++++.|+.+|+++.+- |+ .+++.|+.+.-++.-.+++|-++..|++
T Consensus       307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            66666666655542 334445555555555666666666666666552 33 3445555566566666666666666655


Q ss_pred             C---CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          539 M---PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       539 ~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +   -.+|+  .+.|..+.......||+..|.+.|+-++..+|++.+.++.|+-+-.+.|++++|..+++...+..
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            5   11232  56777777777888999999999999999999999999999999999999999999999886544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=1.5e-10  Score=98.17  Aligned_cols=163  Identities=11%  Similarity=-0.027  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG  524 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  524 (638)
                      ...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+  --+-+..+.|.....+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence            3446667888888888888888888863 33446888888888899999999999988875  23335577888888889


Q ss_pred             hcCChHHHHHHHHhCCCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 006627          525 RAGLLDEAHEMIKSMPLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG  600 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  600 (638)
                      ..|++++|...|+++-..|    -..+|..++....+.|+++.|...++++++++|+.+.....++...+..|+|..|.-
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999998873233    256788888778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q 006627          601 VRRVMKEIRV  610 (638)
Q Consensus       601 ~~~~~~~~~~  610 (638)
                      +++.....+.
T Consensus       195 ~~~~~~~~~~  204 (250)
T COG3063         195 YLERYQQRGG  204 (250)
T ss_pred             HHHHHHhccc
Confidence            8888876655

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.5e-09  Score=95.15  Aligned_cols=286  Identities=15%  Similarity=0.118  Sum_probs=145.8

Q ss_pred             CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc-CCCchhhHHHHHHHHHhcCChHHHHH
Q 006627          253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG-FEFSLAMANALVDMYGKCREIRSART  331 (638)
Q Consensus       253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~  331 (638)
                      +++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|.++.+.+.++. .+.+...                   
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~-------------------  107 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL-------------------  107 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH-------------------
Confidence            567888888888887631 1112222344444555555555555555544321 1111100                   


Q ss_pred             HHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-
Q 006627          332 LFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD-  410 (638)
Q Consensus       332 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-  410 (638)
                                .....|..-|...|-+|.|..+|..+.+.| .--......|+..|-...+|++|+.+-.++.+.+-.+. 
T Consensus       108 ----------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~  176 (389)
T COG2956         108 ----------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR  176 (389)
T ss_pred             ----------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence                      112233444455555555555555554432 11222344455555555555555555555544432221 


Q ss_pred             ---ccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627          411 ---VILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL  484 (638)
Q Consensus       411 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~  484 (638)
                         ...|.-|...+....+.+.|..++.+..+.   .+..--.+.+.....|+++.|++.++...+.+..--+.+...|.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence               123334444444555666666666655532   23333344556666777777777777777664333345666677


Q ss_pred             HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHhhHHHHHHHHhhc---CC
Q 006627          485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMI-KSMPLRPNMIVWGALLAASKLH---KN  560 (638)
Q Consensus       485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~---~~  560 (638)
                      .+|.+.|+.++....+..+.+.   .+....-..+.+......-.+.|..++ +.+.-+|+...+..++......   |.
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~  333 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR  333 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence            7777777777777777776642   233333334444444444445555544 3345567777777776655432   22


Q ss_pred             hHHHHHHHHHHh
Q 006627          561 PSMGEIAATQIL  572 (638)
Q Consensus       561 ~~~A~~~~~~~~  572 (638)
                      ..+....++.++
T Consensus       334 ~k~sL~~lr~mv  345 (389)
T COG2956         334 AKESLDLLRDMV  345 (389)
T ss_pred             hhhhHHHHHHHH
Confidence            344444444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.30  E-value=1.3e-07  Score=92.36  Aligned_cols=462  Identities=14%  Similarity=0.077  Sum_probs=236.2

Q ss_pred             HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 006627           81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEAL  157 (638)
Q Consensus        81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~  157 (638)
                      |...+++.......+.+++. .+-...+....--.+...|+-++|......-..   .+.+.|..+.-.+....++++|+
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai   95 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI   95 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence            44566777777777777663 233344443333344566888888888876655   35567888888888888999999


Q ss_pred             HHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 006627          158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ  237 (638)
Q Consensus       158 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  237 (638)
                      ++|.....  +.||                                    +..++.-+.-.-+..|+++.....-....+
T Consensus        96 Kcy~nAl~--~~~d------------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLq  137 (700)
T KOG1156|consen   96 KCYRNALK--IEKD------------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQ  137 (700)
T ss_pred             HHHHHHHh--cCCC------------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            99998877  4566                                    444444444444455555555544444433


Q ss_pred             ---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-ccCChHhHHHHHHH------hcccCChhhHHHHHHHHHHhcCC
Q 006627          238 ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEEN-VFPSEITILSLIIE------CGFVGGLQLGKWLHAYILRNGFE  307 (638)
Q Consensus       238 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~  307 (638)
                         .....|..+..+..-.|+...|..++++..+.. -.|+...|......      ....|..+.|.+.+..-... +.
T Consensus       138 l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~  216 (700)
T KOG1156|consen  138 LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV  216 (700)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence               234567778888888899999999998887764 24555555332221      12233334333333222111 00


Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc--hhHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCcCCChhhHH-HH
Q 006627          308 FSLAMANALVDMYGKCREIRSARTLFDGMKSKDV--MIWN-AVISAYAQAHCIDKAF-ELFIHMKVSKVRPNEVTMV-GL  382 (638)
Q Consensus       308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~-~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~-~l  382 (638)
                      .....-..-...+.+.+++++|..++..+..+++  ..|. .+..++.+-.+.-++. .+|....+.  .|....-. .=
T Consensus       217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlp  294 (700)
T KOG1156|consen  217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLP  294 (700)
T ss_pred             HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhcc
Confidence            0111112223334444555555555554443222  2222 2222222111112222 333322221  11111100 00


Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 006627          383 LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEAL  462 (638)
Q Consensus       383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  462 (638)
                      ++......-.+....++....+.|+++-.   ..+...|-.....+    ++++           ++..|...=......
T Consensus       295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~-----------Lvt~y~~~L~~~~~f  356 (700)
T KOG1156|consen  295 LSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEK-----------LVTSYQHSLSGTGMF  356 (700)
T ss_pred             HHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHH-----------HHHHHHhhcccccCC
Confidence            11111111122223333334444433221   12222121111000    1110           111111100000000


Q ss_pred             HHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          463 IFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       463 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      ...+.-..  -+|..  .++..++..+-..|+++.|..+++.++   +..|+. +.|-.-.+.+...|++++|..++++.
T Consensus       357 ~~~D~~~~--E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea  431 (700)
T KOG1156|consen  357 NFLDDGKQ--EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEA  431 (700)
T ss_pred             Cccccccc--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            00000000  14444  456667778888999999999998887   445654 55666668888889999999999888


Q ss_pred             C--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------c-chH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          540 P--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------Y-GYN--VLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       540 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~-~~~--~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .  ..||...-..-.....+.++.++|..+..+...-.-+-      . -.|  ..=|.+|.+.|++..|++=|..+.+
T Consensus       432 ~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k  510 (700)
T KOG1156|consen  432 QELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK  510 (700)
T ss_pred             HhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            2  23444333344455567888899988888877644310      1 112  2337789999999999887766644

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=1e-09  Score=114.06  Aligned_cols=244  Identities=14%  Similarity=-0.006  Sum_probs=174.3

Q ss_pred             CHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          356 CIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCT---------EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       356 ~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      ..++|...|++..+.  .|+.. .+..+..++.         ..++.++|...+++..+.+ |.+...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            356788888887654  45433 3333333222         3345788999999988876 667788888888899999


Q ss_pred             CHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHH
Q 006627          426 DVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFD  501 (638)
Q Consensus       426 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~  501 (638)
                      ++++|...|++..  .| +...+..+..++...|++++|+..+++..+.  .|+. ..+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            9999999998866  33 4567888888999999999999999999886  4443 334444555667899999999999


Q ss_pred             HHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          502 KMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM-IVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       502 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      ++.+.  .+| ++..+..+..++...|+.++|...+.++ +..|+. ..+..+...+...|  +.|...++++.+..-..
T Consensus       431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            98763  334 4455677888899999999999999887 445553 34445555666666  47777777776633332


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +.....+..+|.-.|+.+.+... +++.+.+
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            22233377778888888887777 8777654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=1.2e-10  Score=103.44  Aligned_cols=236  Identities=11%  Similarity=0.025  Sum_probs=185.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627          345 NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC  424 (638)
Q Consensus       345 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (638)
                      +.+.++|.+.|-+.+|.+.|+.-...  .|-+.||..|-.+|.+..++..|..++.+-.+.- |-++....-....+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            56677778888888888777776554  4556677777778888888888888777766643 55555556667777788


Q ss_pred             CCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 006627          425 GDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFD  501 (638)
Q Consensus       425 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  501 (638)
                      ++.++|.++|+...+.   ++.....+...|.-.++++-|+.+++++.+.| .-++..|..+.-+|...+++|-++.-|.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            8888888888877643   55566666677888899999999999999999 5678889999999999999999999999


Q ss_pred             HHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          502 KMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       502 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      +.... --.|+  ...|..+.......|++.-|.+.|+-. ...| ....++.|.-.-.+.|++++|..+++.+....|+
T Consensus       383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            88763 33354  367888888889999999999999887 3344 4678888888888999999999999999999998


Q ss_pred             CcchHHHH
Q 006627          578 NYGYNVLM  585 (638)
Q Consensus       578 ~~~~~~~l  585 (638)
                      -.+....+
T Consensus       462 m~E~~~Nl  469 (478)
T KOG1129|consen  462 MAEVTTNL  469 (478)
T ss_pred             ccccccce
Confidence            65554444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=4.5e-07  Score=82.01  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=139.0

Q ss_pred             CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC-------HHHHH
Q 006627          289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC-------IDKAF  361 (638)
Q Consensus       289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~  361 (638)
                      .+-+.|.+++-.+.+.  -|.  ....|+-.|.+.++.++|..+.+++....+.-|-.-.-.++..|+       ..-|.
T Consensus       268 rngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq  343 (557)
T KOG3785|consen  268 RNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ  343 (557)
T ss_pred             eCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence            3445555555444332  122  223466678899999999999999876555444333333333332       44455


Q ss_pred             HHHHHHHHcCcCCChhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 006627          362 ELFIHMKVSKVRPNEVT-MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR  440 (638)
Q Consensus       362 ~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  440 (638)
                      +.|+-.-.++..-|... -.++..++.-..+++++..++..+...=...|.. --.+..+++..|++.+|+++|-.+..|
T Consensus       344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~  422 (557)
T KOG3785|consen  344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGP  422 (557)
T ss_pred             HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence            66655444444333322 2233444455567888888888887754334443 345788999999999999999888866


Q ss_pred             ---CchhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627          441 ---DICMWN-AMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT-FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH  515 (638)
Q Consensus       441 ---~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~  515 (638)
                         |..+|. .|.++|.+.+.++.|.+++-+   ...+.+..+ ...+..-|-+.+.+--|-+.|+.+.   ...|+++.
T Consensus       423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEn  496 (557)
T KOG3785|consen  423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPEN  496 (557)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccc
Confidence               445554 467889999999998776544   332334444 4445567888999888888888885   56788877


Q ss_pred             H
Q 006627          516 Y  516 (638)
Q Consensus       516 ~  516 (638)
                      |
T Consensus       497 W  497 (557)
T KOG3785|consen  497 W  497 (557)
T ss_pred             c
Confidence            7

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=4.9e-07  Score=92.51  Aligned_cols=465  Identities=11%  Similarity=0.066  Sum_probs=301.2

Q ss_pred             HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006627           81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVM  160 (638)
Q Consensus        81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  160 (638)
                      +-+.++...-...++.....| ..++.++|+|...|..+++-.+  ..+++    |..-=+....-||..+++.-|.-.|
T Consensus       848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaY  920 (1666)
T KOG0985|consen  848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAY  920 (1666)
T ss_pred             HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEee
Confidence            334455666666777777888 6789999999999998765332  23322    1111122333444444433222211


Q ss_pred             HHhHH----CCC----------------cCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006627          161 REMRF----MDI----------------RPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYS  220 (638)
Q Consensus       161 ~~m~~----~~~----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (638)
                      ++=..    -.+                +.|...|..++.     .+-.--+++.+..+..+.+...|+......+.++.
T Consensus       921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM  995 (1666)
T KOG0985|consen  921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM  995 (1666)
T ss_pred             cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence            11000    000                123333333332     11122356667777777776668888888899999


Q ss_pred             hcCChHHHHHHHhccC-CCCcc-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhH
Q 006627          221 KCGNLAYAKQLFNRLN-QNSVV-----SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLG  294 (638)
Q Consensus       221 ~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  294 (638)
                      ..+-..+-.++++++. ++++.     .-|.+|-...+. +..++.+..+++..-. .|+      +...+...+-+++|
T Consensus       996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen  996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEA 1067 (1666)
T ss_pred             hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHH
Confidence            9999999999998876 33332     344555444444 3456666666654321 222      23334455667778


Q ss_pred             HHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 006627          295 KWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRP  374 (638)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  374 (638)
                      ..+|+...     .+....+.|+.   .-+.++.|.++-++..+|  ..|+.+..+-.+.|...+|++-|-+      ..
T Consensus      1068 F~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1068 FAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred             HHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence            77776642     23333333333   356788888888887665  6899999999999999999987754      34


Q ss_pred             ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 006627          375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM  454 (638)
Q Consensus       375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~  454 (638)
                      |+..|.-+++.+.+.|.+++-.+++...++..-.|..  -+.|+-+|++.++..+-++++.   .||......+..-|..
T Consensus      1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred             CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhh
Confidence            6778999999999999999999999988887655554  4678999999999988777653   4666666677777778


Q ss_pred             cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 006627          455 HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHE  534 (638)
Q Consensus       455 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  534 (638)
                      .|.++.|.-+|..         ...|..|...+...|++..|...-+++       .+..+|..+..++...+.+.-|.-
T Consensus      1207 ~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred             hhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHh
Confidence            8888777766643         234677777778888888887765555       345677777777776655443321


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          535 MIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       535 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      .  -+.+-.-..-+..++..|...|-+++-+.+++..+.++-.+...+..|+-+|.+- ++++-.+.++..
T Consensus      1271 C--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1271 C--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             c--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            1  0011223456677888888899999999999999888888888888888777654 344444444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.26  E-value=7.3e-10  Score=115.08  Aligned_cols=211  Identities=12%  Similarity=-0.042  Sum_probs=165.7

Q ss_pred             CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh---------cCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCC
Q 006627          390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK---------CGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGC  457 (638)
Q Consensus       390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~  457 (638)
                      ++.+.|...+++..+.. |.+...+..+..+|..         .+++++|...+++...   .+...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            45678999999988865 4455666666655542         2447899999988773   356788888888999999


Q ss_pred             hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 006627          458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMI  536 (638)
Q Consensus       458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~  536 (638)
                      +++|...+++..+.+ +.+...+..+..++...|++++|...++++.+   ..|+. ..+..++..+...|++++|...+
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            999999999999874 44557788889999999999999999999986   34443 23334455567789999999999


Q ss_pred             HhC--CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          537 KSM--PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       537 ~~~--~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +++  ...|+ +..+..+..++...|+.++|...++++....|++......++..|...|+  +|...++.+.+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            887  22454 45567777888899999999999999999999988888999999998884  88888887765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=2.1e-09  Score=106.09  Aligned_cols=230  Identities=17%  Similarity=0.142  Sum_probs=161.7

Q ss_pred             hhHHHHHHHHhccCchHHHHHHHHHHHHh-----C-CCCccc-HHHHHHHHHHhcCCHHHHHHHHHcCCC-------C-C
Q 006627          377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----G-LEVDVI-LKTALVDMYAKCGDVNGAYRLFSEAIY-------R-D  441 (638)
Q Consensus       377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~  441 (638)
                      .+...+...|...|+++.|+..++...+.     | ..|... ..+.+...|...+++.+|..+|+++..       + +
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            35555666777777777777777766554     1 022222 223356677777787777777766541       1 1


Q ss_pred             ---chhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--C
Q 006627          442 ---ICMWNAMMAGYGMHGCGEEALIFFVDMER-----SGV-KPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG--L  509 (638)
Q Consensus       442 ---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~  509 (638)
                         ..+++.|...|.+.|++++|..++++..+     .|. .|.. ..+..+...|...+++++|..++++..+.+.  +
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence               24666677778888887777777666543     121 2333 3467777889999999999999988766432  2


Q ss_pred             CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhcc-
Q 006627          510 VPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEI-  574 (638)
Q Consensus       510 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  574 (638)
                      .++    ..+++.|...|...|++++|.++++++         +..+. ...++.+...|.+.+++.+|.++|.++..+ 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    367889999999999999999999887         11232 456678888899999999999999988763 


Q ss_pred             ---CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          575 ---EPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       575 ---~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                         .|+   -...|..|+.+|.+.|++++|.++.+.+.
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               344   44578899999999999999999988875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.9e-08  Score=91.38  Aligned_cols=392  Identities=9%  Similarity=-0.023  Sum_probs=249.2

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccCCCCc-ccHHHHHHHHHhCC-Ch-HHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSV-VSWTVMISGYIRCN-EI-NEGVRLFAEMIEENVFPSEITILSLIIE  284 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g-~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~  284 (638)
                      +.......+.+|...++-+.|......++..-. ..-|.|+.-+.+.| +. +.+...-.-+++.  +.-..    .|.+
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~----~i~~  169 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQ----VIEA  169 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHH----HHHH
Confidence            556667788999999999999999888876333 33344444333333 22 2222221112211  00000    0000


Q ss_pred             hcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHH--HhcCChHHHHHHHhcCC-----CCCchhHHHHHHHHHhcCCH
Q 006627          285 CGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMY--GKCREIRSARTLFDGMK-----SKDVMIWNAVISAYAQAHCI  357 (638)
Q Consensus       285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~  357 (638)
                      ..+.+ +..+..--..|....++|.......-+.++  +..++-..|...+-.+.     ..|+.....+...+...|+.
T Consensus       170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn  248 (564)
T KOG1174|consen  170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY  248 (564)
T ss_pred             HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence            00000 000011111122222333333333333333  33444444444433222     23777888999999999999


Q ss_pred             HHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627          358 DKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE  436 (638)
Q Consensus       358 ~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  436 (638)
                      ++|...|++.+..  .|+..+-. ...-.+.+.|+.+....+...+.... +.+...+..-........+++.|+.+-++
T Consensus       249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999987643  34433211 11223456788888888877776543 23333333334445566889999999988


Q ss_pred             CCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627          437 AIYRDIC---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI  513 (638)
Q Consensus       437 ~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~  513 (638)
                      .+..++.   .+-.-...+...+++++|.-.|+...... +-+...|.-|+.+|...|+..+|.-.-+...+  -++.+.
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA  402 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSA  402 (564)
T ss_pred             HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcch
Confidence            7755544   44333467888999999999999988652 34668999999999999999999988887766  344455


Q ss_pred             hHHHHHH-H-HHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          514 EHYGCMV-D-LLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       514 ~~~~~l~-~-~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      .+...+. . ++-...--++|..++++. ...|+ ......+...+...|..++++.++++.+...|+ ...+..|++++
T Consensus       403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~  481 (564)
T KOG1174|consen  403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIM  481 (564)
T ss_pred             hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence            5554442 2 222333458899999887 67887 567778888899999999999999999999998 47899999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          590 AVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                      ...+.+.+|.+.|.......+...
T Consensus       482 ~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  482 RAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHhhhHHHHHHHHHHHHhcCccch
Confidence            999999999999988876655443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.25  E-value=2.1e-09  Score=99.51  Aligned_cols=199  Identities=10%  Similarity=0.005  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY  421 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (638)
                      ..+..+...+...|++++|.+.+++..... +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            345555666666666666666666655432 2223344444555555566666666655555543 23333444444444


Q ss_pred             HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHH
Q 006627          422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVF  500 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~  500 (638)
                      .                               ..|++++|...+++.......| ....+..+..++...|++++|...+
T Consensus       110 ~-------------------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521       110 C-------------------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             H-------------------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4                               4455555555555544321111 2234444555556666666666666


Q ss_pred             HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      ++..+  ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus       159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            66654  22223445555666666666666666666655 2222 34444455555556666666666666555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.24  E-value=1.1e-07  Score=95.55  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             hcCC-hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627          557 LHKN-PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRV  604 (638)
Q Consensus       557 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  604 (638)
                      ...+ .++|.++++-+.+..|++..+|.+--.+|.+.|++--|++.+.+
T Consensus       468 ~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  468 KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            4443 68899999999999999999999999999999999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=1.6e-09  Score=102.83  Aligned_cols=216  Identities=11%  Similarity=-0.071  Sum_probs=118.0

Q ss_pred             hcCCHHHHHHHHHHHHHcC-cCCC--hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627          353 QAHCIDKAFELFIHMKVSK-VRPN--EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      ..+..+.++.-+.++.... ..|+  ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            3455666777776666432 2222  2334455556667777777777777776654 4556667777777777777777


Q ss_pred             HHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhh
Q 006627          430 AYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHG  506 (638)
Q Consensus       430 A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  506 (638)
                      |...|++..  .| +...|..+..++...|++++|++.+++..+.  .|+..........+...+++++|...+++... 
T Consensus       117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-  193 (296)
T PRK11189        117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-  193 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence            777776654  22 3455666666666677777777777776654  34332111222223345567777777755443 


Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          507 LGLVPKIEHYGCMVDLLGRAGLLDE--AHEMIKSM-PL----RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       507 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                       ...|+...+ .+..  ...|+..+  +.+.+.+. ..    .| ...+|..+...+...|++++|+..|+++++.+|
T Consensus       194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence             223332211 2222  22333322  22222211 11    11 234566666666677777777777777777665

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=2.5e-11  Score=79.95  Aligned_cols=50  Identities=32%  Similarity=0.567  Sum_probs=48.2

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcc
Q 006627          135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFAD  184 (638)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~  184 (638)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999874

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.22  E-value=5.6e-07  Score=89.02  Aligned_cols=257  Identities=14%  Similarity=0.124  Sum_probs=169.8

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCCch--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchH
Q 006627          316 LVDMYGKCREIRSARTLFDGMKSKDVM--IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALE  393 (638)
Q Consensus       316 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  393 (638)
                      .+.+-.....|.+|+.+++.+.+.++.  -|..+...|...|+++.|.++|.+.-         .++-.|..|.+.|.+.
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence            344556678888999999888766443  46777889999999999999987532         3455678899999999


Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006627          394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV  473 (638)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~  473 (638)
                      .|.++-.+..  |.......|-+-..-+-..|++.+|.++|-.+..|+.     .|..|-+.|..+..+++.++-     
T Consensus       809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----  876 (1636)
T KOG3616|consen  809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----  876 (1636)
T ss_pred             HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----
Confidence            9888766553  3244556666666777888999999999988887764     466788888888888877653     


Q ss_pred             CCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHH
Q 006627          474 KPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGAL  551 (638)
Q Consensus       474 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l  551 (638)
                      .|+.  .|...+..-+...|+...|...|-+.-.          |.+-++.|..++.+++|.++-+.-+ ..+..-...+
T Consensus       877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~f  945 (1636)
T KOG3616|consen  877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAF  945 (1636)
T ss_pred             ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHH
Confidence            2333  5667777778888888888887766532          4445556666677777766655442 1111111111


Q ss_pred             HHH------------------------HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          552 LAA------------------------SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       552 ~~~------------------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +++                        ....+.++-|..+.+-+.+  -..+.++..++.-+-..|++++|-+.+-...
T Consensus       946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen  946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred             HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence            111                        1222333333333332222  2235677788888889999999976655443

>PF13041 PPR_2: PPR repeat family

Probab=99.22  E-value=3e-11  Score=79.56  Aligned_cols=50  Identities=30%  Similarity=0.471  Sum_probs=46.1

Q ss_pred             CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627          238 NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF  287 (638)
Q Consensus       238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  287 (638)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999998874

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.22  E-value=9.6e-07  Score=87.46  Aligned_cols=312  Identities=15%  Similarity=0.144  Sum_probs=148.3

Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChH
Q 006627          248 SGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIR  327 (638)
Q Consensus       248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (638)
                      .+......|.+|+.+++.+++..  .-..-|..+...|+..|+++.|+++|-+.         ..++-.+.+|.+.|+|.
T Consensus       740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence            34445566666666666665542  22234555666666666666666666432         22345566666777777


Q ss_pred             HHHHHHhcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627          328 SARTLFDGMKSK--DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ  405 (638)
Q Consensus       328 ~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  405 (638)
                      .|.++-.+...|  ....|-+-..-+-..|++.+|.+++-...    .|+     ..|..|-+.|..+...++...-.. 
T Consensus       809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~-  878 (1636)
T KOG3616|consen  809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG-  878 (1636)
T ss_pred             HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh-
Confidence            776666665544  22334444444555666666665553321    233     234455556655555555443211 


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627          406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN  485 (638)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  485 (638)
                        ..-..+...+..-|...|++..|...|-+..     -|.+-+..|...+-+++|.++-+   ..| -.|..-...+++
T Consensus       879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayriak---teg-g~n~~k~v~flw  947 (1636)
T KOG3616|consen  879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYRIAK---TEG-GANAEKHVAFLW  947 (1636)
T ss_pred             --hhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHHHHHHHH
Confidence              1112333445555666666666665553321     23334444444455555544432   122 233333333333


Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHH
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      +-+-.|  +.|.+++++.    |+      ...-++..+..+-++-|.++-+-............+.......|++++|-
T Consensus       948 aksigg--daavkllnk~----gl------l~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edas 1015 (1636)
T KOG3616|consen  948 AKSIGG--DAAVKLLNKH----GL------LEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDAS 1015 (1636)
T ss_pred             HHhhCc--HHHHHHHHhh----hh------HHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhh
Confidence            322222  3333333332    11      11122333344444444444332211111122223333344556666666


Q ss_pred             HHHHHHhccCCCCcch------------------HHHHHHHHHhcCCHHHHHHHHH
Q 006627          566 IAATQILEIEPQNYGY------------------NVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      +.|-++++++.-|..+                  -......+.+.++|..|.++-+
T Consensus      1016 khyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae 1071 (1636)
T KOG3616|consen 1016 KHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAE 1071 (1636)
T ss_pred             HhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHH
Confidence            6666666554322110                  0122445777888888887755

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=2.6e-07  Score=92.50  Aligned_cols=275  Identities=10%  Similarity=0.059  Sum_probs=174.3

Q ss_pred             CCc--chHhhhhHHH--hhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHC--------CCCCC
Q 006627            6 GFL--NLEQTRQCHA--HIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKN--------GSEVD   70 (638)
Q Consensus         6 ~~~--~~~~~~~l~~--~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~   70 (638)
                      |++  |..+=.++++  .|.--|+.+.|.+-.+-+   ..|..|.+.|++.++.+-|.-.+..|...        ..+.+
T Consensus       720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            445  6666666766  567789999998887777   89999999999999999888887777431        11111


Q ss_pred             cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC-CcchHHHHHHHHHh
Q 006627           71 NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR-DVVSWSTMIRGYHR  149 (638)
Q Consensus        71 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~  149 (638)
                      ..+=..+.......|..++|..++..-.+.+         .|-..|...|.+++|.++-+.-.+- =-.||......+-.
T Consensus       800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  800 EEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             cchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence            1332333333456788888888888876643         4555677788999998887654331 23356666666777


Q ss_pred             CCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHH
Q 006627          150 GGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAK  229 (638)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  229 (638)
                      .++.+.|++.|++.-.    |-                    .++++.+.                       .++...+
T Consensus       871 r~Di~~AleyyEK~~~----ha--------------------fev~rmL~-----------------------e~p~~~e  903 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGV----HA--------------------FEVFRMLK-----------------------EYPKQIE  903 (1416)
T ss_pred             hccHHHHHHHHHhcCC----hH--------------------HHHHHHHH-----------------------hChHHHH
Confidence            8888889888886421    11                    11111111                       1122233


Q ss_pred             HHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCc
Q 006627          230 QLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFS  309 (638)
Q Consensus       230 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  309 (638)
                      ...+.+..+..  |.--...+-..|+.+.|+.+|...++         |-++++..|-.|+.++|-++-++      .-|
T Consensus       904 ~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd  966 (1416)
T KOG3617|consen  904 QYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGD  966 (1416)
T ss_pred             HHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------ccc
Confidence            33344443322  22233334456888888888877654         45566777778888887777654      235


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHH
Q 006627          310 LAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDK  359 (638)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  359 (638)
                      ....-.|.+.|-..|++.+|..+|.+.     .++...|+.| +.+++++
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA-----qafsnAIRlc-KEnd~~d 1010 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRA-----QAFSNAIRLC-KENDMKD 1010 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHH-HhcCHHH
Confidence            555667888888999999999888764     3455555543 4444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.4e-06  Score=84.57  Aligned_cols=117  Identities=16%  Similarity=0.013  Sum_probs=72.0

Q ss_pred             HHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHH--HHHhh--hcC
Q 006627           44 TSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNA--LIQMY--SEC  119 (638)
Q Consensus        44 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~--~~~  119 (638)
                      .-+...+++++|.....++...+ +-|...+..-+-++.+.+.++.|..+.+.   .+.   ..+++.  +=.+|  -+.
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence            44556677777777777777665 44555666666777777777777744332   221   111111  23333  356


Q ss_pred             CChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC
Q 006627          120 GSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMD  167 (638)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  167 (638)
                      +..++|...++-..+.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus        93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            777777777774444444455555667777888888888888876654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=2.3e-08  Score=85.13  Aligned_cols=192  Identities=13%  Similarity=-0.017  Sum_probs=98.4

Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHH
Q 006627          384 SLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEE  460 (638)
Q Consensus       384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  460 (638)
                      -.|...|+...|..-+++..+.. |.+..++..+...|.+.|+.+.|.+.|++..   ..+-...|....-+|..|++++
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence            34555555555555555555544 4444555555555555555555555555433   2233444555555555555555


Q ss_pred             HHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          461 ALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       461 A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      |...|++....-.-|.. .||..+..+..+.|+.+.|.++|++..+  ..+........+.+.....|++..|..++++.
T Consensus       122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~  199 (250)
T COG3063         122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY  199 (250)
T ss_pred             HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence            55555555543222222 3555555555555666666665555554  22222344445555555555555555555554


Q ss_pred             --CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          540 --PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       540 --~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                        ...++...+...+......||.+.+-+.-.++....|..
T Consensus       200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence              223444454445555555555555555555555555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=3e-08  Score=94.12  Aligned_cols=215  Identities=13%  Similarity=-0.006  Sum_probs=146.1

Q ss_pred             CchHHHHHHHHHHHHhC-CCCc--ccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHH
Q 006627          390 GALEMGKWLHTYIEKQG-LEVD--VILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALI  463 (638)
Q Consensus       390 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~  463 (638)
                      +..+.+..-+.++.... ..|+  ...+..+...|...|+.++|...|++..   ..+...|+.+...+...|++++|..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            35555666666666432 1222  3557777788889999999999888766   2356788888899999999999999


Q ss_pred             HHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 006627          464 FFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--P  540 (638)
Q Consensus       464 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~  540 (638)
                      .|++..+.  .| +..++..+..++...|++++|.+.+++..+.   .|+..............++.++|...+.+.  .
T Consensus       120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            99998875  45 4567788888888899999999999998753   343322222222345567899999998664  2


Q ss_pred             CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          541 LRPNMIVWGALLAASKLHKNPSMGEIAATQIL-------EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       541 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                      ..|+...+   .......|+...+ ..++.+.       ++.|+.+.+|..+|.+|.+.|++++|+.+|++..+.++...
T Consensus       195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            23332222   2222334554333 2333333       45666778899999999999999999999998877665433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=1.1e-07  Score=83.74  Aligned_cols=384  Identities=12%  Similarity=0.000  Sum_probs=217.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHH-HHHhccc
Q 006627          213 TALIDMYSKCGNLAYAKQLFNRLNQN---SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSL-IIECGFV  288 (638)
Q Consensus       213 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~  288 (638)
                      ++.+..+.+..++++|++++..-.+.   +....+.+..+|....++..|-+.++++-..  .|...-|... ...+.+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence            34444445555666666665554432   3344555666666666666666666666543  3444333221 1223344


Q ss_pred             CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS-KDVMIWNAVISAYAQAHCIDKAFELFIHM  367 (638)
Q Consensus       289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m  367 (638)
                      +.+..|.++...|.+.. ..-..+...-....-..+++..+..++++.+. .+..+.+.......+.|+++.|.+-|+..
T Consensus        92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence            45555555555443320 00000011111122346778888888888874 45556666666677888888888888887


Q ss_pred             HHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-------------cc---------------cHHHHHHH
Q 006627          368 KVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV-------------DV---------------ILKTALVD  419 (638)
Q Consensus       368 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~  419 (638)
                      .+.|--.....|+..+. ..+.++.+.|.+...++.++|+..             |.               ..++.-..
T Consensus       171 lqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA  249 (459)
T KOG4340|consen  171 LQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA  249 (459)
T ss_pred             HhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence            66543344556665554 345678888888888887766432             11               11222233


Q ss_pred             HHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627          420 MYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT  494 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  494 (638)
                      .+.+.++++.|.+-+-.|+..     |++|...+.-.- ..+++.+..+-++-+.+.. +-...||..++-.||+..-++
T Consensus       250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~  327 (459)
T KOG4340|consen  250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFD  327 (459)
T ss_pred             hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHh
Confidence            456789999999999998843     666665543322 2345556666666666543 334589999999999999999


Q ss_pred             HHHHHHHHHhhhcCCC-CChhHHHHHHHHH-HhcCChHHHHHHHHhCCCCCCHhhHHHHHHHH--hhcCC---hHHHHHH
Q 006627          495 EGKSVFDKMVHGLGLV-PKIEHYGCMVDLL-GRAGLLDEAHEMIKSMPLRPNMIVWGALLAAS--KLHKN---PSMGEIA  567 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~--~~~~~---~~~A~~~  567 (638)
                      .|-.++-+-... ... .+...|+ |++++ ...-..++|.+-++.+...-........+...  ...++   ...+++-
T Consensus       328 lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~  405 (459)
T KOG4340|consen  328 LAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE  405 (459)
T ss_pred             HHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            998887654321 111 2333444 33444 34457777777666541000001111111111  11222   2334445


Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +++.+++.   ..+....+++|++..+|..+++.|+.-.+
T Consensus       406 Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  406 YDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            55555532   23567789999999999999999996544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.12  E-value=3.5e-08  Score=98.90  Aligned_cols=148  Identities=14%  Similarity=0.082  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-------------CCCCChh--HHHHHHHHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-------------GLVPKIE--HYGCMVDLLG  524 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~  524 (638)
                      .+..++..+...|+|+   +|..+-..|......+-..+++.......             .-+|+..  ++..+...|.
T Consensus       129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd  205 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD  205 (517)
T ss_pred             HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence            4555667777778654   34444444555555555555555543311             1133432  3456678888


Q ss_pred             hcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          525 RAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      ..|++++|+++++++ ...|. +..|..-...+.+.|++++|...++.+.++++.|.....-.+..+.+.|+.++|.+.+
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999987 56675 6777888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCC
Q 006627          603 RVMKEIRV  610 (638)
Q Consensus       603 ~~~~~~~~  610 (638)
                      ...-+.+.
T Consensus       286 ~~Ftr~~~  293 (517)
T PF12569_consen  286 SLFTREDV  293 (517)
T ss_pred             HhhcCCCC
Confidence            98866554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.11  E-value=8.3e-08  Score=95.03  Aligned_cols=234  Identities=14%  Similarity=0.111  Sum_probs=141.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHhcCCCC----------Cch-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CcCCCh-
Q 006627          312 MANALVDMYGKCREIRSARTLFDGMKSK----------DVM-IWNAVISAYAQAHCIDKAFELFIHMKVS---KVRPNE-  376 (638)
Q Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~-  376 (638)
                      +...+...|...|+++.|..+++...+.          .+. ..+.+...|...+++++|..+|+++...   ..-++. 
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3344555555555555555555443321          111 2234566778888888888888886432   111222 


Q ss_pred             ---hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCc-hhHHHHH
Q 006627          377 ---VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDI-CMWNAMM  449 (638)
Q Consensus       377 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~-~~~~~l~  449 (638)
                         .++..|-.+|.+.|++++|...++...+.-                            ++..   .+.+ ..++.+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~----------------------------~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY----------------------------EKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH----------------------------HHhhccChHHHHHHHHHHH
Confidence               233344445666666666666555443310                            0000   0011 1223344


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CC--CCC-hhHH
Q 006627          450 AGYGMHGCGEEALIFFVDMERS---GVKPN----GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GL--VPK-IEHY  516 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~--~p~-~~~~  516 (638)
                      ..++..+++++|..++++..+.   -+.++    ..++..+...|...|++++|.+++++++...   +.  .+. ...+
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l  412 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL  412 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence            4455555555555555543321   11222    2578899999999999999999999887642   11  222 3567


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      +.+...|.+.++..+|.++|.+.        +..|+ ..+|..|..+|...|+++.|.++.+++..
T Consensus       413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            78888889999999888888776        23454 46788999999999999999999998874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.05  E-value=3e-07  Score=82.79  Aligned_cols=293  Identities=12%  Similarity=0.078  Sum_probs=174.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhcc
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVI---SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEA  389 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~  389 (638)
                      .-+...+...|++..|+.-|....+-|+..|.++.   ..|...|+..-|+.=+.+..+  ++||-..-. .--..+.+.
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence            34555566667777777777777766666655543   356666666666666666554  355543222 112345567


Q ss_pred             CchHHHHHHHHHHHHhCCCCc--ccHH------------HHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHH
Q 006627          390 GALEMGKWLHTYIEKQGLEVD--VILK------------TALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGY  452 (638)
Q Consensus       390 ~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~  452 (638)
                      |.++.|..=|+.+.+..-...  ...+            ...+..+...|+...|+.....+.   ..|...+..-..+|
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY  199 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            777777777777766531110  1111            112233444567777776666554   33666666667777


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh----HHHHH---------
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE----HYGCM---------  519 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---------  519 (638)
                      ...|.+..|+.=++...+.. ..+..++..+-..+-..|+.+.++...++..   .+.||-.    .|..|         
T Consensus       200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les  275 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES  275 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence            77777777776666655442 3344555566666667777777777666665   4455532    12211         


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          520 VDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       520 ~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      +....+.+++.++++--++. ...|.     ...+..+...+...+++.+|++...++++.+|+|..++..-+.+|.-..
T Consensus       276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE  355 (504)
T KOG0624|consen  276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE  355 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence            11234456666666665554 33443     1223333444556677888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHhhcCCcC
Q 006627          594 RWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       594 ~~~~A~~~~~~~~~~~~~~  612 (638)
                      +|++|++-|++..+.+...
T Consensus       356 ~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  356 MYDDAIHDYEKALELNESN  374 (504)
T ss_pred             HHHHHHHHHHHHHhcCccc
Confidence            8888888888776655443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.2e-06  Score=84.07  Aligned_cols=237  Identities=16%  Similarity=0.057  Sum_probs=151.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCC------cccHHHH
Q 006627          344 WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEV------DVILKTA  416 (638)
Q Consensus       344 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~  416 (638)
                      ...+.+...+..+++.|++-+.......   ...+|. ..-.++...|.............+.|...      =...+..
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4456666777778888888887766543   333333 44456666666666665555554444211      0111222


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~  495 (638)
                      +..+|.+.++++.+...|.+...+...     -....+....++++...+...-.  .|.. .-...-...+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence            344666677888888888764422111     11122233445555555544332  3433 122233566788899999


Q ss_pred             HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      |...|.++++.  .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|...|+++++
T Consensus       377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998873  3556788888888999999999998887766 45554 45565556666677789999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhc
Q 006627          574 IEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       574 ~~p~~~~~~~~l~~~~~~~  592 (638)
                      ++|++..+...+..+....
T Consensus       455 ~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchhHHHHHHHHHHHHHh
Confidence            9999888888888887764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=9.4e-09  Score=98.99  Aligned_cols=215  Identities=13%  Similarity=0.102  Sum_probs=152.7

Q ss_pred             hccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHH
Q 006627          387 TEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALI  463 (638)
Q Consensus       387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~  463 (638)
                      .+.|++..|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+-   |......|...|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34555666666666665554 555566666666666666666666666554422   34455555566666666666666


Q ss_pred             HHHHHHHcCCCCcHHHHHHHH-----------HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          464 FFVDMERSGVKPNGITFIGLL-----------NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       464 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      .++.-+... +|    |..+.           ..+.....+....++|-++....+.++|+.+...|...|.-.|++++|
T Consensus       375 ~L~~Wi~~~-p~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  375 MLDKWIRNK-PK----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHhC-cc----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            666654432 11    00000           112222334455666666665556668889999999999999999999


Q ss_pred             HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +..|+.+ ..+| |...|+.|..+.....+.++|+..|++++++.|.-..+.+.||-.|...|.|++|.+.|=....
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999988 6677 5789999999999999999999999999999999999999999999999999999998766654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.03  E-value=6.3e-09  Score=97.04  Aligned_cols=251  Identities=12%  Similarity=0.051  Sum_probs=143.3

Q ss_pred             HHHHHhcCChHHHHHHHhcCCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          317 VDMYGKCREIRSARTLFDGMKSK----DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       317 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      ++.+.-.|.+..++.-.+ ....    +.....-+.+++...|+++.++.   ++.... .|.......+...+...++.
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence            344556788888876554 2222    22234456677888888775543   333322 66666665555555544444


Q ss_pred             HHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006627          393 EMGKWLHTYIEKQGLE-VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERS  471 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~  471 (638)
                      +.+..-++........ .+..........+...|++++|++++...  .+.......+..+.+.++++.|.+.++.|.+.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~  160 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI  160 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4444444333222222 23333333345566678888888777665  45566666777788888888888888887753


Q ss_pred             CCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 006627          472 GVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NM  545 (638)
Q Consensus       472 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  545 (638)
                        ..| .+...+..++..    .+.+.+|..+|+++..  ...+++.+.+.+..+....|++++|.+++.+. ...| ++
T Consensus       161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence              233 334444444322    2357778888888765  45566777777777777777777777777665 3333 35


Q ss_pred             hhHHHHHHHHhhcCCh-HHHHHHHHHHhccCCCCc
Q 006627          546 IVWGALLAASKLHKNP-SMGEIAATQILEIEPQNY  579 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~  579 (638)
                      .++..++......|+. +.+.+.++++....|+++
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            5555555555556655 566677777777777754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-06  Score=87.99  Aligned_cols=457  Identities=15%  Similarity=0.074  Sum_probs=244.9

Q ss_pred             hCCCchhHHHH----HHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChh
Q 006627           48 KNNKPSSALNI----YAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLV  123 (638)
Q Consensus        48 ~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  123 (638)
                      ...+.+++.-.    +.++....+..|...|..+--++...|+++.+.+.|++....- -.....|+.+-..|.-+|.-.
T Consensus       296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s  374 (799)
T KOG4162|consen  296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDS  374 (799)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccch
Confidence            34444454432    2333334566788888888888899999999999999987654 345677888888899999999


Q ss_pred             HHHHHhccCCC----CCcc-hHHHHHHHHHh-CCCchHHHHHHHHhHHC------CCcCCHhhHHHHHHHhc-cc-----
Q 006627          124 SARYLFDEMPN----RDVV-SWSTMIRGYHR-GGLPEEALEVMREMRFM------DIRPSEVAMISMVSLFA-DV-----  185 (638)
Q Consensus       124 ~a~~~~~~~~~----~~~~-~~~~li~~~~~-~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~-~~-----  185 (638)
                      .|..++++-..    |+.. .+-..-..|.+ -+..++++++-.+....      .+.|-...+..+--.+. +.     
T Consensus       375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s  454 (799)
T KOG4162|consen  375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS  454 (799)
T ss_pred             HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence            99999987543    3323 33333333433 46677777776666541      12333222222221111 11     


Q ss_pred             ---CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHH
Q 006627          186 ---ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINE  258 (638)
Q Consensus       186 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~  258 (638)
                         ....++.+.++..++.++.   |+.+.-.+.--|+..++++.|.+..++...    .+...|..+.-.+...+++.+
T Consensus       455 eR~~~h~kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~  531 (799)
T KOG4162|consen  455 ERDALHKKSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE  531 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence               1122334444444444443   233333333344455555555555444332    233445555555555555555


Q ss_pred             HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC
Q 006627          259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS  338 (638)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  338 (638)
                      |+.+.+.....                                  .|...  .....-+..-...++.+++......+..
T Consensus       532 Al~vvd~al~E----------------------------------~~~N~--~l~~~~~~i~~~~~~~e~~l~t~~~~L~  575 (799)
T KOG4162|consen  532 ALDVVDAALEE----------------------------------FGDNH--VLMDGKIHIELTFNDREEALDTCIHKLA  575 (799)
T ss_pred             HHHHHHHHHHH----------------------------------hhhhh--hhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence            55555544432                                  11100  0000011111123444444443322210


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCccc-HHH
Q 006627          339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVS--KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVI-LKT  415 (638)
Q Consensus       339 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~  415 (638)
                          .|... ...-..++-...+++...+.-.  ...-...++..+..-....+....-..   .+.+..+.|.+. ++.
T Consensus       576 ----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~---~Lp~s~~~~~~~~~~~  647 (799)
T KOG4162|consen  576 ----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL---KLPSSTVLPGPDSLWY  647 (799)
T ss_pred             ----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc---ccCcccccCCCCchHH
Confidence                00000 0001111111222222221110  001111222222211110000000000   011111112111 111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627          416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  495 (638)
                      .+                        ...|......+...++.++|...+.+..... +-....|......+...|.+.+
T Consensus       648 ~~------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  648 LL------------------------QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             HH------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHH
Confidence            11                        2345556667777888888888887776542 3455677777788888999999


Q ss_pred             HHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHH
Q 006627          496 GKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHE--MIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQ  570 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~  570 (638)
                      |.+.|....   .+.| ++.+..++..++.+.|+..-|..  ++..+ ...| +...|..+...+...|+.++|...|+.
T Consensus       703 A~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a  779 (799)
T KOG4162|consen  703 AKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA  779 (799)
T ss_pred             HHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            999998886   4455 45788899999999998877777  77777 6666 589999999999999999999999999


Q ss_pred             HhccCCCCcc
Q 006627          571 ILEIEPQNYG  580 (638)
Q Consensus       571 ~~~~~p~~~~  580 (638)
                      +.++++.+|.
T Consensus       780 a~qLe~S~PV  789 (799)
T KOG4162|consen  780 ALQLEESNPV  789 (799)
T ss_pred             HHhhccCCCc
Confidence            9999988764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.98  E-value=1.3e-05  Score=82.62  Aligned_cols=570  Identities=11%  Similarity=-0.033  Sum_probs=286.5

Q ss_pred             hHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc--ccHHHHHH
Q 006627           10 LEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN--FTIPTILK   79 (638)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~   79 (638)
                      ...|..|-..|+...+...|...|++.        .++......|++..+++.|..+.-..-+.. +.-.  ..|...--
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP  570 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence            345667777787777888888888877        888889999999999999988844333321 1111  12333333


Q ss_pred             HHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc-hHHHH--HHHHHhCCCchHH
Q 006627           80 ACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVV-SWSTM--IRGYHRGGLPEEA  156 (638)
Q Consensus        80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a  156 (638)
                      .+...++...+..-|+...+.. |.|...|..+..+|.++|++..|.++|.+...-++. .|...  ...-+-.|.+.+|
T Consensus       571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            3556677778888888777665 667888999999999999999999999877653332 22222  2223456777777


Q ss_pred             HHHHHHhHHC------CCcCCHhhHHHHHHHhcccCch-------HHHHHHHHHHHHhccCCCCchhHHHHHHHH-----
Q 006627          157 LEVMREMRFM------DIRPSEVAMISMVSLFADVADV-------DLGKAIHACVVRNCKDEKLGVAIATALIDM-----  218 (638)
Q Consensus       157 ~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-----  218 (638)
                      +..+......      +..--..++......+...|-.       +.+.+.+..........  +...|..+-++     
T Consensus       650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~--~~~~Wi~asdac~~f~  727 (1238)
T KOG1127|consen  650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS--DRLQWIVASDACYIFS  727 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHhHHHHHHH
Confidence            7777665432      1111122333322222222211       22233332222222111  11111111111     


Q ss_pred             --------------HHh----cCCh---H---HHHHHHhccCC--CCcccHHHHHHHHHh----C----CChHHHHHHHH
Q 006627          219 --------------YSK----CGNL---A---YAKQLFNRLNQ--NSVVSWTVMISGYIR----C----NEINEGVRLFA  264 (638)
Q Consensus       219 --------------~~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~----g~~~~a~~~~~  264 (638)
                                    +..    .+..   +   -+.+.+-.-..  .+..+|..++..|.+    .    .+...|+..+.
T Consensus       728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K  807 (1238)
T KOG1127|consen  728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK  807 (1238)
T ss_pred             HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence                          111    1111   0   00000000000  123344444444433    1    12235566666


Q ss_pred             HHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---Cc
Q 006627          265 EMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DV  341 (638)
Q Consensus       265 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~  341 (638)
                      +..+.  ..+...+-..+......|++.-+.-.|-.-.... +....+|..+.-.+.+..+++-|...|.....-   |.
T Consensus       808 kaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl  884 (1238)
T KOG1127|consen  808 KAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL  884 (1238)
T ss_pred             HHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence            55543  3344444444444455566666555544333222 445667777777788889999999998887653   44


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHH--H--HcCcCCChhhHHHHHHHHhccCchHHHHHH----------HHHHHHhCC
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHM--K--VSKVRPNEVTMVGLLSLCTEAGALEMGKWL----------HTYIEKQGL  407 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~  407 (638)
                      ..|-.........|+.-+...+|..-  .  ..|-.|+-.-+.........+|+.+.-+..          ++.... +.
T Consensus       885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~  963 (1238)
T KOG1127|consen  885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GH  963 (1238)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cC
Confidence            45544444445566666666666551  1  122233333222222233344443332222          222222 33


Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-----CCCchhHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAI-----YRDICMWNA----MMAGYGMHGCGEEALIFFVDMERSGVKPNGI  478 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~  478 (638)
                      +.+...|.+......+.+.+.+|.++..+..     +-+...|+.    +.+.++..|.++.|..-+...-.   ..+..
T Consensus       964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEd 1040 (1238)
T KOG1127|consen  964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDED 1040 (1238)
T ss_pred             cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHH
Confidence            5566677777666666677766666655433     223334442    22233334444433322211000   00111


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHH---
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALL---  552 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~---  552 (638)
                      ...+-+. ..-.++++++.+.|+++..-..-..+ +.....+..+....+..+.|...+-+.  ..+|+..+...+.   
T Consensus      1041 i~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred             HhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence            1111111 13345566666666665542111222 123334444445555555555544333  1122211111111   


Q ss_pred             ----------------------------------HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          553 ----------------------------------AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       553 ----------------------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                                                        ..+.+.|+-....+.++++...+|.++..|..|..-|..
T Consensus      1120 ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1120 ILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred             HHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence                                              124566777778888888889999999999888754443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.97  E-value=4.4e-06  Score=85.97  Aligned_cols=542  Identities=12%  Similarity=-0.008  Sum_probs=267.9

Q ss_pred             CchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhc
Q 006627           51 KPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFD  130 (638)
Q Consensus        51 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  130 (638)
                      +...|+..|-+..+..+ .=...|..|-..|....+...|...|....+.+ ..+........+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            36666666666655431 122357777777776667777888888777765 5566777777788888888888777743


Q ss_pred             cCCCCC-----cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCC
Q 006627          131 EMPNRD-----VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDE  205 (638)
Q Consensus       131 ~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  205 (638)
                      ...+.+     ...|-...-.|.+.++..+|..-|+...+.. +-|...|..+..+|.+.|....|.++|.......+..
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            322211     1122223333445555555655555555432 2233455555555555555555555555544443331


Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhccCC---------CC-cccHHHHHHHHHhCCChHHHHHHHHHHHH-------
Q 006627          206 KLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---------NS-VVSWTVMISGYIRCNEINEGVRLFAEMIE-------  268 (638)
Q Consensus       206 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------  268 (638)
                         ....--....-+..|.+.+|...++.+..         .+ ..++-.+...+.-.|-..++.+.+++-.+       
T Consensus       630 ---~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  630 ---KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence               11111122223344555555554444331         00 01111111112222222222222222111       


Q ss_pred             cC--------------------c---cCChHhHHHHHHHhcccCCh---h---hHHHHHHHHHHhcCCCchhhHHHHHHH
Q 006627          269 EN--------------------V---FPSEITILSLIIECGFVGGL---Q---LGKWLHAYILRNGFEFSLAMANALVDM  319 (638)
Q Consensus       269 ~~--------------------~---~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~  319 (638)
                      ..                    +   .|+......+..-....+..   +   .+-+.+-  ....+..+...+..|...
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGIN  784 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHH
Confidence            00                    0   12222222222211112211   1   0000000  000111122222223222


Q ss_pred             HHh----cC----ChHHHHHHHhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627          320 YGK----CR----EIRSARTLFDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE  388 (638)
Q Consensus       320 ~~~----~~----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  388 (638)
                      |.+    .|    +...|...+....   ..+...||.|.-. ...|++.-+.--|-+-... -+....+|..+--.+..
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~  862 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE  862 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence            222    11    1223444444433   2355566655443 4445555555544443322 13345566666667778


Q ss_pred             cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCCchhHHHHHHHHHhcCChHH
Q 006627          389 AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--------YRDICMWNAMMAGYGMHGCGEE  460 (638)
Q Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~  460 (638)
                      ..+++.|...|...+... |.+...+-.........|+.-++..+|..-.        .++..-|-........+|+.++
T Consensus       863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~  941 (1238)
T KOG1127|consen  863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE  941 (1238)
T ss_pred             cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence            888888888888887654 4455555444444556677777777775411        2233333333333344555444


Q ss_pred             HHHHH----------HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----HHHHHHHhc
Q 006627          461 ALIFF----------VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG----CMVDLLGRA  526 (638)
Q Consensus       461 A~~~~----------~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~  526 (638)
                      -+...          ++... +.+.....|........+.+.+..|.+...++..-...+-+...|+    .+.+.++..
T Consensus       942 ~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen  942 SINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred             HHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence            33332          33332 2233446777777777777778777777766543222233334444    344566777


Q ss_pred             CChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHHHHHHHHH
Q 006627          527 GLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG---YNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       527 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      |.++.|..-+.......+..+...-+.. +-.++++++...|++++.+--.+..   ....++.+....+..+.|...+=
T Consensus      1021 gefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred             cchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence            8888887777665444444333332222 4467899999999999886554443   34455566667777777777544


Q ss_pred             HH
Q 006627          604 VM  605 (638)
Q Consensus       604 ~~  605 (638)
                      +.
T Consensus      1100 e~ 1101 (1238)
T KOG1127|consen 1100 EV 1101 (1238)
T ss_pred             HH
Confidence            33

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=3.4e-05  Score=77.93  Aligned_cols=197  Identities=15%  Similarity=0.040  Sum_probs=111.7

Q ss_pred             chHhhhhHHHhhhhcCChhHHHHhhhhh---h-------------cHHHHHHHH-HhCCCchhHHHHHHHHHHCCCCCCc
Q 006627            9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---T-------------RYNSLVTSY-IKNNKPSSALNIYAFMRKNGSEVDN   71 (638)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-------------~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~   71 (638)
                      +..+|..+.++|.+..+++.|.-.+-.|   +             .-..-+.++ ..-|..++|..+|.+..+.+     
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----  830 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----  830 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence            5678899999999999999998888777   1             111112222 35678888888888887643     


Q ss_pred             ccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC----------------
Q 006627           72 FTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR----------------  135 (638)
Q Consensus        72 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------  135 (638)
                          .+=+.|...|.+++|.++-+.--+.  .. ..+|......+-..+|.+.|++.|++...+                
T Consensus       831 ----LlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e  903 (1416)
T KOG3617|consen  831 ----LLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE  903 (1416)
T ss_pred             ----HHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence                3334566778898888876653222  22 234444555566677888888888765432                


Q ss_pred             -------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCc
Q 006627          136 -------DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLG  208 (638)
Q Consensus       136 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  208 (638)
                             |...|..-...+-..|+.+.|+.+|...+.         |-++++..|-.|+.++|.++-+..-        |
T Consensus       904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--------d  966 (1416)
T KOG3617|consen  904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--------D  966 (1416)
T ss_pred             HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--------c
Confidence                   233334344444444555555555544332         3344444444555555544443321        2


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhc
Q 006627          209 VAIATALIDMYSKCGNLAYAKQLFNR  234 (638)
Q Consensus       209 ~~~~~~l~~~~~~~g~~~~A~~~~~~  234 (638)
                      ....-.|.+.|-..|++.+|..+|.+
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33333444444444555554444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.95  E-value=6.7e-08  Score=85.12  Aligned_cols=123  Identities=8%  Similarity=0.053  Sum_probs=99.8

Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH-hhcCC--hHHH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS-KLHKN--PSMG  564 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~A  564 (638)
                      .++.+++...++...+  .-+.+...|..+...|...|++++|...++++ ...| +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            5667777777777775  45667788888888898999999999998887 5556 566777777653 56676  5999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP  614 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  614 (638)
                      .++++++++.+|+++.++..++..+...|++++|+..|+++.+..++.++
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999999999999999999999877665444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.94  E-value=3.4e-08  Score=92.21  Aligned_cols=246  Identities=9%  Similarity=-0.053  Sum_probs=149.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627          349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN  428 (638)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  428 (638)
                      +-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+   +.++.... +|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44556778887776555 22211111223444556777777776643   33443333 566666655555554445556


Q ss_pred             HHHHHHHcCC-CC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          429 GAYRLFSEAI-YR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       429 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                      .+..-+++.. .+    +..........+...|++++|++++..-      .+.......+..+.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666665444 22    1112222223455668888888877542      44566677778888888888888888888


Q ss_pred             hhhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          504 VHGLGLVPKIEHYGCMVDLLG----RAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       504 ~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .+   ...|. +...+..++.    -.+++.+|..+|+++  ...+++.+.+.+..++...|++++|...++++++.+|+
T Consensus       158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            64   33333 3333433332    234688888888888  34567777777888888888888888888888888888


Q ss_pred             CcchHHHHHHHHHhcCCH-HHHHHHHHHHhhcC
Q 006627          578 NYGYNVLMSNIYAVANRW-NDVAGVRRVMKEIR  609 (638)
Q Consensus       578 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~  609 (638)
                      ++.+...++.+....|+. +.+.+++.++++..
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            888888888888888888 66777888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=1e-07  Score=87.91  Aligned_cols=181  Identities=10%  Similarity=-0.081  Sum_probs=114.3

Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----H
Q 006627          409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG----I  478 (638)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~  478 (638)
                      .....+..+...+...|++++|...|+++..  | +.   ..+..+..++...|++++|...++++.+..  |+.    .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence            3445556666667777777777777776552  2 11   345556667777777777777777777642  322    1


Q ss_pred             HHHHHHHHHhcc--------CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627          479 TFIGLLNACSHA--------GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG  549 (638)
Q Consensus       479 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  549 (638)
                      ++..+..++...        |++++|.+.++.+...   .|+. ..+..+....    ......           .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHH
Confidence            344444444443        5667777777777653   2322 1221111110    000000           00112


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          550 ALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      .+...+...|++++|...++++++..|++   +..+..++.++.+.|++++|..+++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45567888999999999999999998765   4689999999999999999999999987654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.7e-06  Score=76.49  Aligned_cols=311  Identities=11%  Similarity=0.004  Sum_probs=154.9

Q ss_pred             HHHHHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHH-HHHhccc
Q 006627          110 NALIQMYSECGSLVSARYLFDEMPNR---DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISM-VSLFADV  185 (638)
Q Consensus       110 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~  185 (638)
                      ++.+..+++..++.+|++++....++   +....+.|..+|....++..|.++++++-.  ..|...-|..- .+.+.+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence            33444444555555555555444331   334455555555566666666666666554  23443333221 1222333


Q ss_pred             CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-CCcccHHHHHHHHHhCCChHHHHHHHH
Q 006627          186 ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIRCNEINEGVRLFA  264 (638)
Q Consensus       186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~  264 (638)
                      +.+..|..+...+.+. ...  -......-.......+++..+..+.++.+. .+..+.+...-...+.|+++.|++-|+
T Consensus        92 ~i~ADALrV~~~~~D~-~~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN-PAL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             cccHHHHHHHHHhcCC-HHH--HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence            4444444444443321 000  011111111222345777777777777774 444455555555567788888888887


Q ss_pred             HHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-----
Q 006627          265 EMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-----  339 (638)
Q Consensus       265 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----  339 (638)
                      ...+-+--.....|+..+. ..+.++.+.|.+...+++++|++..+..-.         |...+... .+.+..+     
T Consensus       169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~  237 (459)
T KOG4340|consen  169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ  237 (459)
T ss_pred             HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence            7766533333455655553 445677888888888888877643222110         00000000 0000000     


Q ss_pred             --CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627          340 --DVMIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA  416 (638)
Q Consensus       340 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (638)
                        -+..+|.-...+.+.++++.|.+.+.+|.-+. -..|++|...+.-. --.+++....+-++.+...+ |....+|..
T Consensus       238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN  315 (459)
T KOG4340|consen  238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN  315 (459)
T ss_pred             HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence              01123333344556677777777777763321 23455555543211 11233444444455555543 445567777


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAI  438 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~  438 (638)
                      ++-.||+..-++-|-.++.+-.
T Consensus       316 lLllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHhhCc
Confidence            7777777777777777765533

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.87  E-value=3.8e-06  Score=83.12  Aligned_cols=256  Identities=11%  Similarity=-0.014  Sum_probs=142.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCcCCCh-hhHHH---HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          350 AYAQAHCIDKAFELFIHMKVSKVRPNE-VTMVG---LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       350 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      .+...|++++|.+.+++..+.  .|+. ..+..   ........+..+.+.+.+... ....+........+...+...|
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence            455667777777777776654  2332 22221   111112234444444444331 1111222233344556677778


Q ss_pred             CHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHhccCcHHHHHHH
Q 006627          426 DVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPNG--ITFIGLLNACSHAGLVTEGKSV  499 (638)
Q Consensus       426 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~  499 (638)
                      ++++|...+++..   ..+...+..+..++...|++++|...+++...... .|+.  ..|..+...+...|++++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8888887777655   22455666777777788888888888877765421 1222  2345667777788888888888


Q ss_pred             HHHHhhhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCCC---HhhHHHHHHHHhhcCChHHHHHHHH
Q 006627          500 FDKMVHGLGLVPKIEHY-G--CMVDLLGRAGLLDEAHEM--I-KSM-PLRPN---MIVWGALLAASKLHKNPSMGEIAAT  569 (638)
Q Consensus       500 ~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~  569 (638)
                      +++........+..... +  .++..+...|....+.++  + ... +..|.   .........++...|+.+.|...++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            88875321111222111 1  223333344433333333  1 111 11011   1122244556677888888888888


Q ss_pred             HHhccCC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          570 QILEIEP---------QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       570 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      .+....-         .........+.++...|++++|.+.+......
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7765221         12455677888899999999999998877643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.4e-06  Score=79.80  Aligned_cols=425  Identities=11%  Similarity=0.004  Sum_probs=240.1

Q ss_pred             HHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC
Q 006627          145 RGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN  224 (638)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  224 (638)
                      .+.+..|+++.|+..|-+..... ++|.+.|+.-..+++..|+++.|..=-....+..+.+   +..|.....++.-.|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhccc
Confidence            45677899999999998887754 3466678888888888888888877777777777665   5667777777788888


Q ss_pred             hHHHHHHHhccCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC-hhhH-HHHHH
Q 006627          225 LAYAKQLFNRLNQN---SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG-LQLG-KWLHA  299 (638)
Q Consensus       225 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a-~~~~~  299 (638)
                      +++|+.-|.+-.+.   |...++-+..++    ..+.+.     +.   ..-++..+..+..--...+. .+.+ ..+++
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~  153 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE  153 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence            88888888776652   233455555544    111111     10   01111111111110000000 0000 01111


Q ss_pred             HHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHH----HHHHHHHHHHH-cCcCC
Q 006627          300 YILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCID----KAFELFIHMKV-SKVRP  374 (638)
Q Consensus       300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~-~g~~p  374 (638)
                      .+. .  .|+      -+..|....++..+...+......-...-...+  ......+.    .......++.+ ....-
T Consensus       154 ~~~-~--~p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~~k~  222 (539)
T KOG0548|consen  154 IIQ-K--NPT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERRVKE  222 (539)
T ss_pred             Hhh-c--CcH------hhhcccccHHHHHHHHHHhcCcccccccccccc--CCCCCCcccccCCCCCccchhHHHHHHHH
Confidence            110 0  010      011111111122222222211100000000000  00000000    00000000000 00001


Q ss_pred             ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---chhHHHH---
Q 006627          375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRD---ICMWNAM---  448 (638)
Q Consensus       375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l---  448 (638)
                      -..-...+.++.-+..+++.+.+-+....+..  -+..-++....+|...|.+......-....+..   ...|+.+   
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~  300 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA  300 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence            11223455666667778888888888877765  555556667778888888777766555433221   1123333   


Q ss_pred             ----HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHH
Q 006627          449 ----MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLL  523 (638)
Q Consensus       449 ----~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~  523 (638)
                          ..+|.+.++++.++..|++.......|+..         .+....+++.+..+...   -+.|.. .-...-+..+
T Consensus       301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~  368 (539)
T KOG0548|consen  301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEA  368 (539)
T ss_pred             HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHH
Confidence                335555678888888888877655454432         22333444544444432   233433 1222336778


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          524 GRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      .+.|++..|+..+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.
T Consensus       369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998 4455 5778888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCC
Q 006627          602 RRVMKEIRV  610 (638)
Q Consensus       602 ~~~~~~~~~  610 (638)
                      |++..+..+
T Consensus       449 y~eale~dp  457 (539)
T KOG0548|consen  449 YQEALELDP  457 (539)
T ss_pred             HHHHHhcCc
Confidence            998766553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.82  E-value=4.3e-06  Score=75.57  Aligned_cols=311  Identities=13%  Similarity=0.060  Sum_probs=199.4

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHH---HHhcccCChhhHHHHHHHHHHhcCCCchhh-HHHHHHH
Q 006627          244 TVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLI---IECGFVGGLQLGKWLHAYILRNGFEFSLAM-ANALVDM  319 (638)
Q Consensus       244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~  319 (638)
                      -.+...+...|++..|+.-|....+-    |+..|.++.   ..|...|....|..-+...++.  +||-.. ...-...
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence            35777888889999999998887663    333443333   3455566666666555555543  343221 1112334


Q ss_pred             HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHH
Q 006627          320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLH  399 (638)
Q Consensus       320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  399 (638)
                      +.+.|.++.|..-|+.+.+.++.. +....+..+.--.++-.                .....+..+...|+...|+...
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMI  178 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHH
Confidence            556677777776666655432210 00000111100001111                1122233455677888888888


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627          400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE---AIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN  476 (638)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  476 (638)
                      ..+.+.. +.|...+..-..+|...|++..|+.-++.   +...+...+-.+-..+...|+.+.++...++-++.  .||
T Consensus       179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpd  255 (504)
T KOG0624|consen  179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPD  255 (504)
T ss_pred             HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccc
Confidence            8887765 67777888888888888888888766654   34556667777777778888888888888877654  566


Q ss_pred             HHH----HHHH---H------HHHhccCcHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627          477 GIT----FIGL---L------NACSHAGLVTEGKSVFDKMVHGLGLVPK-----IEHYGCMVDLLGRAGLLDEAHEMIKS  538 (638)
Q Consensus       477 ~~~----~~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~  538 (638)
                      ...    |..+   .      ......+.|.++.+..+...+.   .|.     ...+..+-.++...|++-+|++...+
T Consensus       256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence            532    2211   1      1234567778888877777652   343     24456667788889999999999888


Q ss_pred             C-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          539 M-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       539 ~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      . .+.|+ +.++..-..+|.-...++.|+.-|+++.+.+|+|..+..
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            7 66675 788888888999999999999999999999998865544

>PLN02789 farnesyltranstransferase

Probab=98.81  E-value=2.3e-06  Score=81.12  Aligned_cols=213  Identities=9%  Similarity=-0.031  Sum_probs=141.5

Q ss_pred             CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCh--HHHHH
Q 006627          390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG-DVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCG--EEALI  463 (638)
Q Consensus       390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~A~~  463 (638)
                      +..++|......+.+.. +-+..+++....++...| ++++++..++++...   +..+|+.....+.+.|+.  ++++.
T Consensus        51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            34455555555555543 333344444444444555 456677666665522   334455444444445542  66788


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHH
Q 006627          464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLL----DEAHEMI  536 (638)
Q Consensus       464 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~  536 (638)
                      +++++.+.. +-|..+|.....++...|+++++++.++++++.  -+.+...|+.....+.+.   |..    ++++++.
T Consensus       130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            888888764 446678888888888889999999999999873  344556666666555444   222    4667776


Q ss_pred             HhC-CCCC-CHhhHHHHHHHHhhc----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------------
Q 006627          537 KSM-PLRP-NMIVWGALLAASKLH----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN-----------------  593 (638)
Q Consensus       537 ~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------------  593 (638)
                      .++ ...| +...|+.+...+...    ++..+|...+.+++..+|+++.++..|+.+|....                 
T Consensus       207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~  286 (320)
T PLN02789        207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL  286 (320)
T ss_pred             HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence            554 5555 577888888887763    34567999999999999999999999999998743                 


Q ss_pred             -CHHHHHHHHHHHh
Q 006627          594 -RWNDVAGVRRVMK  606 (638)
Q Consensus       594 -~~~~A~~~~~~~~  606 (638)
                       ..++|.++++.|.
T Consensus       287 ~~~~~a~~~~~~l~  300 (320)
T PLN02789        287 SDSTLAQAVCSELE  300 (320)
T ss_pred             ccHHHHHHHHHHHH
Confidence             3477888888883

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.78  E-value=3.2e-05  Score=86.99  Aligned_cols=257  Identities=12%  Similarity=-0.001  Sum_probs=117.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCCh----hhHHHHHHHHhccCchHHHHHHHHHHHHhCC---CC--cccHHHHHHHHH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNE----VTMVGLLSLCTEAGALEMGKWLHTYIEKQGL---EV--DVILKTALVDMY  421 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~  421 (638)
                      +...|++++|...+++....-...+.    .....+...+...|+++.|...+++.....-   .+  .......+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            34455556655555554332101111    1222333344455666666555554443110   11  112333444455


Q ss_pred             HhcCCHHHHHHHHHcCCC-------CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc--HHHHHHHHHH
Q 006627          422 AKCGDVNGAYRLFSEAIY-------RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS--GVKPN--GITFIGLLNA  486 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~  486 (638)
                      ...|++++|...+++...       ++    ...+..+...+...|++++|...+++....  ...+.  ...+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            556666666555544221       00    112223334445556666666666654432  11111  1233334455


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCHh----hHHHHHHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHY-----GCMVDLLGRAGLLDEAHEMIKSMPLR--PNMI----VWGALLAAS  555 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~  555 (638)
                      +...|+++.|.+.++.+............+     ...+..+...|+.+.|.+++......  ....    .+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            556666776666666654310000000000     01112334456666666666554211  1111    123344555


Q ss_pred             hhcCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          556 KLHKNPSMGEIAATQILEIEP------QNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ...|++++|...++++.+...      .....+..++.++.+.|+.++|.+.+.+..+
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666677777777776665321      1223455666667777777777776666643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=1.8e-07  Score=77.87  Aligned_cols=108  Identities=9%  Similarity=-0.067  Sum_probs=60.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKL  557 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  557 (638)
                      +..+...+...|++++|...|+.+..  --+.+...+..+..++.+.|++++|...|+++ ...| +...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            33445555566666666666666553  22334455555566666666666666666555 3333 34555555555556


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      .|++++|+..+++++++.|+++..+...+.+.
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            66666666666666666666665555555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=1.9e-07  Score=77.79  Aligned_cols=108  Identities=7%  Similarity=-0.073  Sum_probs=91.6

Q ss_pred             HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      .++++..+   +.|+  .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++
T Consensus        14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            44555543   3454  3556788889999999999999987 4455 67888999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |+++.++..++.++...|++++|+..|++..+..+
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999876554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.71  E-value=1.1e-06  Score=76.87  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      ..+...+...|+-+....+........ +.|.......+....+.|++..|...++++..  .-++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            444555556666666666555543321 22334444466666666777777777766665  556666666666667777


Q ss_pred             cCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627          526 AGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       526 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      .|++++|..-+.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....|.+..+-..|+-+....|+.++|+++..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777776666655 3444 345556666666666777777777766666666666666666666667777776666544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.68  E-value=3.9e-05  Score=75.95  Aligned_cols=266  Identities=11%  Similarity=-0.055  Sum_probs=167.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHH-HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH---
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVG-LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA---  416 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---  416 (638)
                      ..|..+...+...|+.+.+.+.+.+..+.. ..++...... ....+...|+++.|..+++...+.. |.+...+..   
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence            445566666777777777766666654332 1223222221 2234567899999999999988864 445444442   


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRDI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLV  493 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  493 (638)
                      ........+..+.+.+.+......++   .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence            12222234566666666665332222   344455678889999999999999999874 44567788889999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHH------HHHHHHhhcCChHHH
Q 006627          494 TEGKSVFDKMVHGLGLVPKI--EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWG------ALLAASKLHKNPSMG  564 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~l~~~~~~~~~~~~A  564 (638)
                      ++|..++++........|+.  ..|..+...+...|++++|..++++. ...|....+.      .++.-+...|....+
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            99999999988632222332  34667888999999999999999987 2233111111      223333444543333


Q ss_pred             HHH---HHHHhccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          565 EIA---ATQILEIEPQ--NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       565 ~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      ...   ........|.  ........+.++...|+.++|.+.++.+....
T Consensus       245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~  294 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA  294 (355)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            332   1221111122  12233477888999999999999999986543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=2.4e-06  Score=90.84  Aligned_cols=199  Identities=13%  Similarity=0.133  Sum_probs=161.4

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC--------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-H
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR--------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-I  478 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~  478 (638)
                      |.+...|-..|......++.++|+++.++....        -...|.++++.....|.-+...++|+++.+.   -|+ .
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence            555677777788888888999999888876632        2347888888878888888889999998874   333 5


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhhHHHHHHH
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN---MIVWGALLAA  554 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~  554 (638)
                      .|..|...|.+.+.+++|.++++.|.++++  .....|..++..+.+..+-++|..++.++ ..-|.   .......+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            688889999999999999999999999655  66678888999999999999999999887 43443   3444555666


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      -++.|+.+.++.+|+..+.-.|.-...|.-+++.-.+.|+.+.++++|++....+..
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            678999999999999999999998889999999999999999999999998765543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.67  E-value=9.4e-07  Score=87.88  Aligned_cols=187  Identities=12%  Similarity=0.091  Sum_probs=100.3

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-
Q 006627          412 ILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA-  490 (638)
Q Consensus       412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-  490 (638)
                      ..-..+...+...|-...|..++++     ...|.-.+.+|+..|+..+|..+..+-.++  +|++..|..+.+..... 
T Consensus       399 q~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence            3334444555555555555555543     233444455555555555555555544442  44555555554444443 


Q ss_pred             ---------------------------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 006627          491 ---------------------------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR  542 (638)
Q Consensus       491 ---------------------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  542 (638)
                                                 ++++++.+.|+.-.+  -.+....+|..+.-+..+.++++.|.+.|... ...
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence                                       445555555544433  11223345555555556666666666666554 444


Q ss_pred             CC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          543 PN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       543 p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      |+ ...|+.+-.+|.+.|+..+|...++++++-+-++..+|....-+..+.|.|++|.++++++.+
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            53 456666666666666666666666666666555555665555556666666666666666643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=3e-06  Score=84.41  Aligned_cols=227  Identities=11%  Similarity=-0.010  Sum_probs=176.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627          345 NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC  424 (638)
Q Consensus       345 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (638)
                      ..+...+...|-...|+.++++..         .+..++.+|+..|+...|..+..+..+ . +||+..|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k-~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-K-DPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-C-CCcchhHHHhhhhccCh
Confidence            345667788889999999998765         466788889999999999999888777 3 89999999999998888


Q ss_pred             CCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627          425 GDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV  504 (638)
Q Consensus       425 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  504 (638)
                      .-++.|.++.+.....   .-..+.....+.++++++.+.|+.-.+.. +--..+|..+..+..+.++++.|.+.|...+
T Consensus       471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv  546 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV  546 (777)
T ss_pred             HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence            8899999998764433   11222222344789999999999877653 3455788888888889999999999999998


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--Ccc
Q 006627          505 HGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYG  580 (638)
Q Consensus       505 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~  580 (638)
                      .  +-+-+...|+.+-.+|.+.|+..+|...++++ +. .-+...|...+-.....|.+++|.+++.++.++.-+  ++.
T Consensus       547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~  624 (777)
T KOG1128|consen  547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE  624 (777)
T ss_pred             h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence            5  44556689999999999999999999999998 22 334567777777888999999999999999875433  344


Q ss_pred             hHHHHHHH
Q 006627          581 YNVLMSNI  588 (638)
Q Consensus       581 ~~~~l~~~  588 (638)
                      +...++..
T Consensus       625 vl~~iv~~  632 (777)
T KOG1128|consen  625 VLLIIVRT  632 (777)
T ss_pred             hhHHHHHH
Confidence            44444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=2.1e-06  Score=83.27  Aligned_cols=247  Identities=11%  Similarity=-0.003  Sum_probs=168.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627          350 AYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       350 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      -+.+.|+..+|.-.|+..+... +-+...|..|-......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            3456666777776776665542 2233456666666666666667777777776655 5566666677777777777777


Q ss_pred             HHHHHHcCCCCCch-hHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627          430 AYRLFSEAIYRDIC-MWNAMM---------AGYGMHGCGEEALIFFVDM-ERSGVKPNGITFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       430 A~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  498 (638)
                      |.+.++......+. .|....         ..+..........++|-++ .+.+..+|+.....|.-.|--.|++++|..
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            77777664311100 000000         0111111223344444444 455545777788888888888999999999


Q ss_pred             HHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          499 VFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       499 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      .|+.++.   ++| |..+||.|+..+....+.++|++.++++ .++|+ +.++..+.-.|...|.+++|...|=.++.+.
T Consensus       452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999985   445 6688999999999999999999999998 78887 5677788889999999999999999999876


Q ss_pred             CC-----C-----cchHHHHHHHHHhcCCHHHHHHH
Q 006627          576 PQ-----N-----YGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       576 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      +.     .     ..+|..|-.++...++.|-+.++
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            64     1     24777777778888877755444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=4.3e-06  Score=73.26  Aligned_cols=154  Identities=16%  Similarity=0.053  Sum_probs=103.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627          415 TALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG  491 (638)
Q Consensus       415 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  491 (638)
                      ..+-..+...|+-+....+.....   ..|......++....+.|++.+|+..+++..... ++|..+|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            555566666677666666666533   2244455557777777788888888888777654 667777777777888888


Q ss_pred             cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHhhHHHHHHHHhhcCChHHHHHHHH
Q 006627          492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPL-RP-NMIVWGALLAASKLHKNPSMGEIAAT  569 (638)
Q Consensus       492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~  569 (638)
                      +.+.|..-|.+..+-  ..-++..++.+...+.-.|+++.|..++..... .+ |...-..+.......|+++.|+.+..
T Consensus       149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            888888877777652  233445667777777777888888887777622 22 45555666666677777777777655


Q ss_pred             HH
Q 006627          570 QI  571 (638)
Q Consensus       570 ~~  571 (638)
                      +-
T Consensus       227 ~e  228 (257)
T COG5010         227 QE  228 (257)
T ss_pred             cc
Confidence            43

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.61  E-value=5.2e-07  Score=73.44  Aligned_cols=96  Identities=9%  Similarity=-0.008  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ......+...+...|++++|..+|+-. ...| +...|..|...+...|++++|+..|.++..++|++|..+..++.++.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            355556677788899999999999987 4555 57888899999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhc
Q 006627          591 VANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~  608 (638)
                      ..|+.+.|++.|+.....
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999988654

>PLN02789 farnesyltranstransferase

Probab=98.60  E-value=3.2e-06  Score=80.10  Aligned_cols=189  Identities=12%  Similarity=0.028  Sum_probs=141.3

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc--
Q 006627          419 DMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHG-CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL--  492 (638)
Q Consensus       419 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--  492 (638)
                      ..+...++.++|+.+..++...   +..+|+....++...| ++++++..++++.+.. +-+..+|......+.+.|+  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence            3344557888888888887743   3345665556666667 6799999999999874 4455667666555666665  


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CC----hHH
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KN----PSM  563 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~~~  563 (638)
                      .+++..+++++.+  .-+-+...|+....++.+.|++++|++.++++ ...| +..+|+.......+.   |.    .+.
T Consensus       124 ~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        124 ANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence            3678899988886  44557788999999999999999999999998 4444 567777776665543   22    256


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  610 (638)
                      +.....++++.+|+|..+|..++.++..    .++..+|.+......+.++
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence            8888889999999999999999999988    4566778888887665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.60  E-value=6.1e-06  Score=72.78  Aligned_cols=155  Identities=12%  Similarity=0.078  Sum_probs=116.3

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627          419 DMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       419 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  498 (638)
                      -.|...|+++.+....+.+..+.        ..+...++.++++..+++..+.. +.|...|..+...|...|++++|..
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~   94 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL   94 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45667777776654443322221        01112556678888888877764 6677889999999999999999999


Q ss_pred             HHHHHhhhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          499 VFDKMVHGLGLVPKIEHYGCMVDLL-GRAGL--LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       499 ~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .|++..+  -.+.+...+..+..++ ...|+  .++|.+++++. ...| +..++..+...+...|++++|+..++++++
T Consensus        95 a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370         95 AYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999986  3344667778888764 67777  59999999998 5555 578888888999999999999999999999


Q ss_pred             cCCCCcchHHH
Q 006627          574 IEPQNYGYNVL  584 (638)
Q Consensus       574 ~~p~~~~~~~~  584 (638)
                      ++|.+..-+..
T Consensus       173 l~~~~~~r~~~  183 (198)
T PRK10370        173 LNSPRVNRTQL  183 (198)
T ss_pred             hCCCCccHHHH
Confidence            99887655443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.59  E-value=0.00084  Score=65.17  Aligned_cols=173  Identities=13%  Similarity=0.100  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-cccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627          357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV-DVILKTALVDMYAKCGDVNGAYRLFS  435 (638)
Q Consensus       357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  435 (638)
                      .+.....++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ ++.+++++++.|+. ++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            55666777776543322233467778888888888999999999999988777 78888999987775 77889999998


Q ss_pred             cCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--
Q 006627          436 EAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG--  508 (638)
Q Consensus       436 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  508 (638)
                      -..+.   ++.-....+.-+...|+-..+..+|++....++.|+.  ..|..++.--+.-|+...+.++-++....+.  
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence            76632   4445566778888899999999999999998777766  6899999999999999999998888776443  


Q ss_pred             CCCChhHHHHHHHHHHhcCChH
Q 006627          509 LVPKIEHYGCMVDLLGRAGLLD  530 (638)
Q Consensus       509 ~~p~~~~~~~l~~~~~~~g~~~  530 (638)
                      ..+....-..+++-|.-.+...
T Consensus       506 qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  506 QEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hcCCCChHHHHHHHHhhccccc
Confidence            3333333344455554444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=1.1e-05  Score=77.08  Aligned_cols=114  Identities=19%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A  564 (638)
                      +...|++++|+..++.+..  ..+-|+.......+.+.+.|+..+|.+.++++ ...|+ ...+..+.+++.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            3345556666666666554  23333444444455556666666666666555 34444 34444555566666666666


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      +..++.....+|+++..|..|+.+|...|+..+|....
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~  431 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR  431 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence            66666666666666666666655555555544444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.55  E-value=1e-05  Score=84.84  Aligned_cols=130  Identities=10%  Similarity=-0.036  Sum_probs=83.1

Q ss_pred             CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHH
Q 006627          474 KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGA  550 (638)
Q Consensus       474 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~  550 (638)
                      ..+...+..|.....+.|.+++|..+++.+.+   +.|+. .....++..+.+.+++++|+..+++. ...|+ ......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            34456666666666677777777777776653   34443 44455566666677777777766666 44453 344455


Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +..++.+.|++++|...|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55566666777777777777777666666677777777777777777777766664

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.54  E-value=1.2e-06  Score=72.78  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      ....+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|...
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence            3444455555556666666666554 2223 4455555666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHhhc
Q 006627          593 NRWNDVAGVRRVMKEI  608 (638)
Q Consensus       593 g~~~~A~~~~~~~~~~  608 (638)
                      |++++|...|+...+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        99 GEPESALKALDLAIEI  114 (135)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            6666666666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.4e-05  Score=67.13  Aligned_cols=197  Identities=10%  Similarity=0.091  Sum_probs=126.8

Q ss_pred             cCCHHHHHHHHHHHHH---cC-cCCChhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627          354 AHCIDKAFELFIHMKV---SK-VRPNEVT-MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN  428 (638)
Q Consensus       354 ~~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  428 (638)
                      ..++++..+++.++..   .| ..|+..+ |..++-+....|+.+.|...++.+...- |-+..+-..-.-.        
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~--------   95 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAML--------   95 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHH--------
Confidence            3456666666666533   23 4444443 3345556666777777777777766543 3232221111111        


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627          429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG  508 (638)
Q Consensus       429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  508 (638)
                                             +-..|++++|+++++.+.+.+ +.|..++..=+...-..|+.-+|++-+.+..+  .
T Consensus        96 -----------------------lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~  149 (289)
T KOG3060|consen   96 -----------------------LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--K  149 (289)
T ss_pred             -----------------------HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--H
Confidence                                   223456677777777777664 44556666666666667777788888888777  5


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCCCcchHH
Q 006627          509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      +..|.+.|..+...|...|++++|.-.++++ -..| ++..+..+...+...|   +.+.|++.|.++++++|.+...+.
T Consensus       150 F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  150 FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            6778888888888888888888888888887 3445 4555555655544433   678899999999999997655554


Q ss_pred             HH
Q 006627          584 LM  585 (638)
Q Consensus       584 ~l  585 (638)
                      .+
T Consensus       230 GI  231 (289)
T KOG3060|consen  230 GI  231 (289)
T ss_pred             HH
Confidence            33

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=2e-05  Score=83.46  Aligned_cols=233  Identities=10%  Similarity=0.053  Sum_probs=132.3

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL  385 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  385 (638)
                      +...+..|+..+...+++++|..+.+...+.   ....|-.+...+.+.++.+++..+                 .++..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence            3445556666666666666666666644322   222333333344555554443333                 22222


Q ss_pred             HhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHH
Q 006627          386 CTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEAL  462 (638)
Q Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~  462 (638)
                      .....++..+..+.+.+...  .-+...+..+..+|-+.|+.++|...|+++.+   .|+.+.|.+...|... +.++|.
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence            33333343344444444442  23334566667777777777777777766552   2555666666666666 777777


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006627          463 IFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR  542 (638)
Q Consensus       463 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  542 (638)
                      +++.+....               +...+++..+.++|.++..  ..+.+...+..+.+.....-..            .
T Consensus       170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~  220 (906)
T PRK14720        170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------T  220 (906)
T ss_pred             HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------c
Confidence            776665543               4455567777777777765  3333444433333332222111            1


Q ss_pred             CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      --..++..+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus       221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            223444555666777788888888888888888888888888888876

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.51  E-value=0.00021  Score=80.47  Aligned_cols=286  Identities=10%  Similarity=-0.075  Sum_probs=135.5

Q ss_pred             HcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC----CC---c-----chHHHHHHHHHh
Q 006627           82 AQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN----RD---V-----VSWSTMIRGYHR  149 (638)
Q Consensus        82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~li~~~~~  149 (638)
                      ...|++..+...++.+.......++.........+...|+++++...+....+    .+   .     .....+...+..
T Consensus       385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (903)
T PRK04841        385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN  464 (903)
T ss_pred             HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence            34455555555554442111112222223333344455666666666543321    00   0     111122234456


Q ss_pred             CCCchHHHHHHHHhHHCCCcCCH----hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHhc
Q 006627          150 GGLPEEALEVMREMRFMDIRPSE----VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKL---GVAIATALIDMYSKC  222 (638)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  222 (638)
                      .|++++|...++.....-...+.    .....+-..+...|+++.|...+............   .......+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            77777777777776542111111    12233334455677777777777666543222100   123344556667778


Q ss_pred             CChHHHHHHHhccCC-------CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcC--ccCC--hHhHHHHHHHhcc
Q 006627          223 GNLAYAKQLFNRLNQ-------NS----VVSWTVMISGYIRCNEINEGVRLFAEMIEEN--VFPS--EITILSLIIECGF  287 (638)
Q Consensus       223 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~  287 (638)
                      |+++.|...+++...       ++    ...+..+...+...|++++|...+.+.....  ..+.  ...+..+......
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            888888777665432       11    1123344455666688888887777764421  1111  2223334445556


Q ss_pred             cCChhhHHHHHHHHHHhcCCCc-hhhH-----HHHHHHHHhcCChHHHHHHHhcCCCCCch-------hHHHHHHHHHhc
Q 006627          288 VGGLQLGKWLHAYILRNGFEFS-LAMA-----NALVDMYGKCREIRSARTLFDGMKSKDVM-------IWNAVISAYAQA  354 (638)
Q Consensus       288 ~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~  354 (638)
                      .|+.+.|...++......-... ...+     ...+..+...|+.+.|...+.....+...       .+..+..++...
T Consensus       625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  704 (903)
T PRK04841        625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL  704 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence            6777777776666543211000 0000     01122333456666666665554432110       012334445555


Q ss_pred             CCHHHHHHHHHHH
Q 006627          355 HCIDKAFELFIHM  367 (638)
Q Consensus       355 ~~~~~a~~~~~~m  367 (638)
                      |++++|...+++.
T Consensus       705 g~~~~A~~~l~~a  717 (903)
T PRK04841        705 GQFDEAEIILEEL  717 (903)
T ss_pred             CCHHHHHHHHHHH
Confidence            5555555555554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=5.1e-06  Score=72.03  Aligned_cols=168  Identities=10%  Similarity=0.033  Sum_probs=134.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      |..++-+....|+.+.|...++++... + |.+. .-..-...+...|.+++|.++++.+.++  -+-|..++..-+...
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil  130 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence            344555666778889999999998876 2 5443 3332333355789999999999999973  455677787777778


Q ss_pred             HhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---CHHHH
Q 006627          524 GRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN---RWNDV  598 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A  598 (638)
                      -..|+.-+|++-+.+.  .+..|...|..+...|...|++++|.-.+++++=.+|-++..+..++++++-.|   ++.-|
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            8889888998888777  566799999999999999999999999999999999999999999999988887   67778


Q ss_pred             HHHHHHHhhcCCcCCCCe
Q 006627          599 AGVRRVMKEIRVKKEPGF  616 (638)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~  616 (638)
                      +++|.+..+-.++...++
T Consensus       211 rkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  211 RKYYERALKLNPKNLRAL  228 (289)
T ss_pred             HHHHHHHHHhChHhHHHH
Confidence            888988877666555444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=0.00012  Score=64.41  Aligned_cols=250  Identities=11%  Similarity=-0.017  Sum_probs=144.7

Q ss_pred             HHHhcCChHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHH
Q 006627          319 MYGKCREIRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGK  396 (638)
Q Consensus       319 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  396 (638)
                      -+.-.|.+..++..-.....  .++..-.-+.++|...|.+.....-.   .. |-.|....+..+-......++.+.-.
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence            33444566665554444332  22333333455666666554333221   11 11333333333333333344433332


Q ss_pred             -HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006627          397 -WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP  475 (638)
Q Consensus       397 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p  475 (638)
                       .+.+.+.......+......-...|...|++++|++.......-.  ....=...+.+..+.+.|.+.+++|.+   -.
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---id  167 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKMHRFDLAEKELKKMQQ---ID  167 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---cc
Confidence             333444443333333333334556778888888888887633222  222223445566778888888888885   24


Q ss_pred             cHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHH
Q 006627          476 NGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWG  549 (638)
Q Consensus       476 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~  549 (638)
                      +..|.+.|..++.+    .+.+.+|.-+|+++-.  ..+|+..+.+....+....|++++|..+++++  +...++.++.
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            55677767766643    4467888888888875  57788888888888888888888888888877  3333566665


Q ss_pred             HHHHHHhhcC-ChHHHHHHHHHHhccCCCCc
Q 006627          550 ALLAASKLHK-NPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       550 ~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .++-.....| +.+--.+...++....|+++
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            5555545555 44555667777777888754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.45  E-value=1.2e-05  Score=74.05  Aligned_cols=182  Identities=13%  Similarity=0.011  Sum_probs=124.3

Q ss_pred             CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc---cHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cch---h
Q 006627          374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV---ILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DIC---M  444 (638)
Q Consensus       374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~  444 (638)
                      .....+..+...+...|+++.|...++.+.... +.+.   ..+..+..++...|++++|...++++..  | +..   .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345566677788899999999999999998764 3332   4667788999999999999999998863  3 222   3


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627          445 WNAMMAGYGMH--------GCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH  515 (638)
Q Consensus       445 ~~~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~  515 (638)
                      +..+..++...        |++++|.+.++++...  .|+. .....+.....    ..      ....         ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~  168 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GK  168 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HH
Confidence            45555555544        7789999999999876  4543 23222211100    00      0000         01


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PL---RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      ...+...+.+.|++++|...+++. ..   .| ....+..+..++...|++++|...++.+....|+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            124556778889999998888877 22   23 3567788888888999999999888887766653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.41  E-value=7e-06  Score=68.11  Aligned_cols=116  Identities=13%  Similarity=-0.002  Sum_probs=89.9

Q ss_pred             HHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 006627          464 FFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL  541 (638)
Q Consensus       464 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  541 (638)
                      .+++....  .|+ ......+...+...|++++|.+.++.+..  ..+.+...+..+..++...|++++|..+++.. ..
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555543  443 35566677778888999999999998876  33456778888888999999999999988877 34


Q ss_pred             CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          542 RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       542 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .| +...+..+...+...|++++|...++++++++|++.....
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence            44 5677778888899999999999999999999998766443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.40  E-value=6.1e-06  Score=79.76  Aligned_cols=123  Identities=11%  Similarity=0.044  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHh
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASK  556 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  556 (638)
                      ....|+..+...++++.|.++++++.+.   .|+  ....+++.+...++..+|.+++++. ...| +...+......+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455666666777888888888888753   244  3344677777778888888888776 3344 5666666677888


Q ss_pred             hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ..++++.|+.++++++++.|++...|..|+.+|...|++++|+-.+..+-
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12854 PPR_1: PPR repeat

Probab=98.38  E-value=6e-07  Score=52.77  Aligned_cols=32  Identities=44%  Similarity=0.724  Sum_probs=16.6

Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627          406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEA  437 (638)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  437 (638)
                      |++||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.37  E-value=0.00011  Score=77.12  Aligned_cols=132  Identities=9%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      +..+..|.....+.|++++|..+++...+.  .|+. .....++..+.+.+++++|...+++...  .-+-+......+.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a  161 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA  161 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence            445555555555566666666666665553  3433 3455555566666666666666666654  2223334445555


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .++...|++++|..+|+++ ...|+ ..++..+...+...|+.++|...|+++++...+
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            5666666666666666665 12232 455556666666666666666666666665443

>PF12854 PPR_1: PPR repeat

Probab=98.37  E-value=5.8e-07  Score=52.81  Aligned_cols=32  Identities=38%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             cCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 006627          305 GFEFSLAMANALVDMYGKCREIRSARTLFDGM  336 (638)
Q Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  336 (638)
                      |+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666665

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00012  Score=64.35  Aligned_cols=244  Identities=9%  Similarity=-0.030  Sum_probs=154.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV  427 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  427 (638)
                      ++-+.-.|.+..++..-......  +.+...-..+-++|...|......   ..+.... .|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence            34455567777777655543322  122333333445555555543221   1222222 23333333333333333443


Q ss_pred             HHHHH-HHHcCCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627          428 NGAYR-LFSEAIYR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK  502 (638)
Q Consensus       428 ~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  502 (638)
                      ++-.. +.+.+..+    +......-...|+..+++++|++......      +......=...+.+..+.+-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322 22223222    22233334457889999999999887622      233344444566788899999999999


Q ss_pred             HhhhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          503 MVHGLGLVPKIEHYGCMVDLLG----RAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       503 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      |..-    .+-.+.+.|..++.    -.++..+|.-+|+++  +..|++.+.+.....+...|++++|..+++.++..+|
T Consensus       163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            9751    34456665665554    346789999999999  4778999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 006627          577 QNYGYNVLMSNIYAVANRWNDVA-GVRRVMKE  607 (638)
Q Consensus       577 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  607 (638)
                      ++|.+...+..+-...|.-.++. +.+.+++.
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            99999999999988888876654 45665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=8.2e-05  Score=71.26  Aligned_cols=142  Identities=15%  Similarity=0.015  Sum_probs=97.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCCh
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLL  529 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  529 (638)
                      .+...|++++|+..++.+...- +-|..........+...++.++|.+.++++..   ..|+ ....-.+..+|.+.|++
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~  390 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP  390 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence            3445677888888888877652 33445555566677888888888888888874   3444 45555677788888888


Q ss_pred             HHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          530 DEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       530 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+|+.++++.  ..+.|+..|..|..+|...|+..++..                 ..++.|+-.|+|++|...+...++
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence            8888888777  334467788888888888887665543                 345556667777777777776665


Q ss_pred             cCCcCC
Q 006627          608 IRVKKE  613 (638)
Q Consensus       608 ~~~~~~  613 (638)
                      ..-..+
T Consensus       454 ~~~~~~  459 (484)
T COG4783         454 QVKLGF  459 (484)
T ss_pred             hccCCc
Confidence            543333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=8.9e-05  Score=78.68  Aligned_cols=206  Identities=10%  Similarity=0.027  Sum_probs=113.5

Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 006627          378 TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGC  457 (638)
Q Consensus       378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~  457 (638)
                      .+..|+..+...+++++|.++.+...+.. |.....|-.+...+...++.+++.-+             .++..+....+
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~   98 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK   98 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence            34444444445555555555555333332 22233333333344444444333322             12233333334


Q ss_pred             hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627          458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIK  537 (638)
Q Consensus       458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  537 (638)
                      +..+..+...|...  .-+...+..+..+|.+.|+.++|..+|+++.+-  -+-++...|.+...|... ++++|.+++.
T Consensus        99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720         99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence            43333333444432  233346666666777777777777777777652  244566666666666666 7777777666


Q ss_pred             hCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch--------------------HHHHHHHHHhcCCHHH
Q 006627          538 SMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY--------------------NVLMSNIYAVANRWND  597 (638)
Q Consensus       538 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------------~~~l~~~~~~~g~~~~  597 (638)
                      ++            +..+...+++..+..+++++.+.+|++-..                    +.-+-..|...++|++
T Consensus       174 KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        174 KA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             HH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence            53            223445556666677777777766665443                    2233366778889999


Q ss_pred             HHHHHHHHhhcCCcCCC
Q 006627          598 VAGVRRVMKEIRVKKEP  614 (638)
Q Consensus       598 A~~~~~~~~~~~~~~~~  614 (638)
                      +..+++.+.+...+...
T Consensus       242 ~i~iLK~iL~~~~~n~~  258 (906)
T PRK14720        242 VIYILKKILEHDNKNNK  258 (906)
T ss_pred             HHHHHHHHHhcCCcchh
Confidence            99999999877665544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.31  E-value=0.00015  Score=77.87  Aligned_cols=220  Identities=13%  Similarity=0.081  Sum_probs=151.5

Q ss_pred             hHHHHHHHhcccCChhhHHHHHHHHHHh-cCCC---chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-C-chhHHHHHHH
Q 006627          277 TILSLIIECGFVGGLQLGKWLHAYILRN-GFEF---SLAMANALVDMYGKCREIRSARTLFDGMKSK-D-VMIWNAVISA  350 (638)
Q Consensus       277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~li~~  350 (638)
                      .|-..|......++.+.|+++.++++.. ++.-   -..+|.++++.-..-|.-+...++|++..+- | ...|..|...
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3555555556666666666666665542 1211   2345667777777777777788888877653 2 3467778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLE-VDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      |.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.--. .........+..-.+.|+.+.
T Consensus      1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence            88888888888888888764 3456677888888888888888888888887765311 134445556667778888888


Q ss_pred             HHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHH
Q 006627          430 AYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       430 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~  497 (638)
                      +..+|+.....   ....|+..++.-.++|+.+.+..+|++....++.|-.  ..|...+..--+.|+-..++
T Consensus      1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            88888877633   5678888888888888888888888888888877754  34555555444445544333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.29  E-value=0.0047  Score=60.20  Aligned_cols=159  Identities=10%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL  522 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  522 (638)
                      +|..++..-.+..-...|..+|.+..+.+..+ ......+++..+| .++..-|.++|+--.+++|-  ++.--...++.
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf  444 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDF  444 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence            44455555555555566666666666555444 3344555555444 34555666666655543322  22333344555


Q ss_pred             HHhcCChHHHHHHHHhC-C--CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcC
Q 006627          523 LGRAGLLDEAHEMIKSM-P--LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY----GYNVLMSNIYAVAN  593 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g  593 (638)
                      +...++-..|..+|++. +  ..|+  ...|...+..-..-|+...+.++-++.....|.+.    ..-..+..-|.-.+
T Consensus       445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d  524 (656)
T KOG1914|consen  445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD  524 (656)
T ss_pred             HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence            55566666666666655 1  2222  35566666555566666666666666665555221    12334445555555


Q ss_pred             CHHHHHHHHHHH
Q 006627          594 RWNDVAGVRRVM  605 (638)
Q Consensus       594 ~~~~A~~~~~~~  605 (638)
                      ++.--..-++.|
T Consensus       525 ~~~c~~~elk~l  536 (656)
T KOG1914|consen  525 LYPCSLDELKFL  536 (656)
T ss_pred             cccccHHHHHhh
Confidence            555555545444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.28  E-value=2.2e-06  Score=61.23  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=60.2

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHhhc
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN-RWNDVAGVRRVMKEI  608 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  608 (638)
                      ++.+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|++.+++..+-
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            46788889999999999999999999999999999999999999999999 799999999987653

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.27  E-value=3.1e-05  Score=64.85  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             cCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----hhHHHHHHHHhhcCChHH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM----IVWGALLAASKLHKNPSM  563 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~  563 (638)
                      .++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+.    .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5666666666666665322111 1122333445666677777777777766 222332    244455667777888888


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      |+..++.. .-.|-.+..+..+|.+|.+.|++++|+..|++.
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            88887663 333334667788888888888888888888753

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.26  E-value=2.9e-06  Score=59.70  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+|+++.+..+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            456788999999999999999999999999999999999999999999999999876554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.24  E-value=1.4e-06  Score=65.07  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             cCChHHHHHHHHhC-CCCC---CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          526 AGLLDEAHEMIKSM-PLRP---NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       526 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      .|++++|+.+++++ ...|   +...+..+...+.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45666777776666 2222   445666678888889999999999988 778888778888889999999999999999


Q ss_pred             HHH
Q 006627          602 RRV  604 (638)
Q Consensus       602 ~~~  604 (638)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.24  E-value=1.3e-05  Score=64.73  Aligned_cols=96  Identities=10%  Similarity=-0.058  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMS  586 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~  586 (638)
                      ++..++..+.+.|++++|.+.++.+ ...|+    ...+..+..++...|+++.|...+++++...|++   +..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3444555556666666666666555 22222    2345556666777777777777777777776664   34566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          587 NIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       587 ~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .++.+.|++++|.+.++.+.+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCc
Confidence            777777777777777777765544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=2.4e-05  Score=70.04  Aligned_cols=108  Identities=15%  Similarity=0.075  Sum_probs=72.5

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A  564 (638)
                      ..+.++|.+|+..|.++++  -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            4566777777777777764  22234445555566777777777777776665 45554 56777777778888888888


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWN  596 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  596 (638)
                      ++.|+++++++|++......|.++--+.+...
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            88888888888887766666666655544444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=2.3e-05  Score=70.70  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=91.0

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CChHHHHHHHHHHhccCCCCcchH
Q 006627          508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KNPSMGEIAATQILEIEPQNYGYN  582 (638)
Q Consensus       508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~  582 (638)
                      ..+-|...|..|...|...|+...|...|.++ .+.| ++..+..+..++...   .+..++...+++++.++|.|....
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            34557788888888888888888888888877 3343 566666666655432   257899999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeE
Q 006627          583 VLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSS  618 (638)
Q Consensus       583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  618 (638)
                      ..|+..+...|+|.+|...|+.|.+..++.+|..+-
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~  266 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL  266 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence            999999999999999999999999999988887543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.20  E-value=4.9e-05  Score=73.61  Aligned_cols=127  Identities=13%  Similarity=0.037  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627          413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL  492 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  492 (638)
                      ....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            334455556666777777777777776666666667777777777788888888877652 3355566666667778888


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR  542 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  542 (638)
                      ++.|.++.+++.+  -.+-+..+|..|..+|...|++++|+-.++.++..
T Consensus       250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            8888888888875  33334568888888888888888888888877533

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.16  E-value=2.1e-05  Score=60.53  Aligned_cols=94  Identities=19%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      +..++..+...|++++|...++++ ...| +...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            445666777788888888888876 3344 34667777788888899999999999999999998889999999999999


Q ss_pred             CHHHHHHHHHHHhhcC
Q 006627          594 RWNDVAGVRRVMKEIR  609 (638)
Q Consensus       594 ~~~~A~~~~~~~~~~~  609 (638)
                      ++++|...++...+..
T Consensus        83 ~~~~a~~~~~~~~~~~   98 (100)
T cd00189          83 KYEEALEAYEKALELD   98 (100)
T ss_pred             hHHHHHHHHHHHHccC
Confidence            9999999998876543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.16  E-value=0.015  Score=60.51  Aligned_cols=159  Identities=17%  Similarity=0.078  Sum_probs=89.2

Q ss_pred             HHHHHHHhccCchH---HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CchhHHHHHHHH
Q 006627          380 VGLLSLCTEAGALE---MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR----DICMWNAMMAGY  452 (638)
Q Consensus       380 ~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~  452 (638)
                      +.++..+.+.++..   +|+-+++...... +.|..+--.++..|.-.|-+..|.++|..+.-.    |..-|. +..-+
T Consensus       440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~  517 (932)
T KOG2053|consen  440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA  517 (932)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence            35667777777655   3444455544443 555666677889999999999999999887633    322222 23444


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHH---HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTE---GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL  528 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  528 (638)
                      ...|++..+...+.....-- ..+. .+-..+..+| +.|.+.+   ...+=+++... .-.....+-+..+..+...++
T Consensus       518 ~t~g~~~~~s~~~~~~lkfy-~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~  594 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKFY-DSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR  594 (932)
T ss_pred             HhcccchhHHHHHHHHHHHH-hhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence            55677777777766654321 1111 2222333333 2344443   33333333321 111122344556677778888


Q ss_pred             hHHHHHHHHhCCCCC
Q 006627          529 LDEAHEMIKSMPLRP  543 (638)
Q Consensus       529 ~~~A~~~~~~~~~~p  543 (638)
                      .++-...+..|..+|
T Consensus       595 ~~q~~~~~~~~~l~~  609 (932)
T KOG2053|consen  595 GTQLLKLLESMKLPP  609 (932)
T ss_pred             HHHHHHHHhccccCc
Confidence            888888888875443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.08  E-value=0.00025  Score=59.41  Aligned_cols=124  Identities=15%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh--hHHHHHH
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI--EHYGCMV  520 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~  520 (638)
                      ..++..+ ..++...+...++.+.+.. +.+.   .....+...+...|++++|...|+.+... ...|+.  .....+.
T Consensus        16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence            3344444 4677888888888888763 3331   23444556778889999999999998874 322222  2344567


Q ss_pred             HHHHhcCChHHHHHHHHhCCCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          521 DLLGRAGLLDEAHEMIKSMPLR-PNMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      .++...|++++|+..++..... ..+..+......+...|+.++|+..|++++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            7888889999999999776322 345566677788889999999999998764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.07  E-value=0.00045  Score=57.19  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=114.4

Q ss_pred             CCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhH
Q 006627          473 VKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVW  548 (638)
Q Consensus       473 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~  548 (638)
                      ..|+...-..|..+....|++.+|...|++.... -+.-|..+.-.+.++....+++..|...+++. ...|   ++.+.
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            3677777788889999999999999999999873 45567788888889999999999999999887 3333   35566


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627          549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG  615 (638)
Q Consensus       549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  615 (638)
                      ..+..++...|.+++|+..|+.++...|+ +.....++..+.++|+.++|..-+..+-+.-.+..|+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H  229 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH  229 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence            66788899999999999999999999998 7888889999999999888877666555444433343

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=1.7e-05  Score=70.98  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 006627          520 VDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWND  597 (638)
Q Consensus       520 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  597 (638)
                      ..-+.+.+++++|+..+.++ .+.| |+..|..-..+|.+.|.++.|++..+.++.++|.....|..|+.+|...|++++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            44567889999999999988 6777 566667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 006627          598 VAGVRRVMKE  607 (638)
Q Consensus       598 A~~~~~~~~~  607 (638)
                      |++.|++..+
T Consensus       168 A~~aykKaLe  177 (304)
T KOG0553|consen  168 AIEAYKKALE  177 (304)
T ss_pred             HHHHHHhhhc
Confidence            9999996654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00025  Score=66.29  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=110.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH-------------H
Q 006627          450 AGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH-------------Y  516 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-------------~  516 (638)
                      .++...|++++|...--..++.. ..+......-..++-..++.+.|...|++.+   .+.|+-..             +
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence            45667788888888777666542 2222222222233446778888888888876   34554322             2


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSM-PLRP-----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ..=..-..+.|++.+|.+.+.+. .+.|     +...|.....+..+.|+.++|+...+.+++++|.-..+|..-+.++.
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            22233456789999999999887 4444     44455555566778999999999999999999998889999999999


Q ss_pred             hcCCHHHHHHHHHHHhhc
Q 006627          591 VANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~  608 (638)
                      ..++|++|++.+++..+.
T Consensus       333 ~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999887543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.03  E-value=9.9e-06  Score=48.52  Aligned_cols=35  Identities=29%  Similarity=0.645  Sum_probs=31.2

Q ss_pred             ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627          241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE  275 (638)
Q Consensus       241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  275 (638)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999999998873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=4.7e-05  Score=74.24  Aligned_cols=109  Identities=10%  Similarity=-0.007  Sum_probs=92.7

Q ss_pred             HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC
Q 006627          482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK  559 (638)
Q Consensus       482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~  559 (638)
                      .-...+...|++++|++.|+++++  ..+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            345567788999999999999986  34446678888899999999999999999998 5556 5778888999999999


Q ss_pred             ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      ++++|+..++++++++|+++.....+..+..+.
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998888887775555

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.01  E-value=1e-05  Score=48.08  Aligned_cols=34  Identities=26%  Similarity=0.633  Sum_probs=31.7

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcC
Q 006627          137 VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRP  170 (638)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  170 (638)
                      +.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999987

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.00  E-value=9e-05  Score=59.82  Aligned_cols=105  Identities=9%  Similarity=0.013  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHH
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALL  552 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  552 (638)
                      ++..+...+.+.|++++|.+.+..+.+.+.-.| ....+..+..++.+.|++++|...++++ ...|+    ...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            445555666677777777777777765321111 1234555677777777777777777766 22333    45566777


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .++...|+.++|...++++++..|+++....
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7788888888888888888888888765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=1.1e-05  Score=48.27  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=29.5

Q ss_pred             cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc
Q 006627           38 RYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN   71 (638)
Q Consensus        38 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~   71 (638)
                      +||.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6888999999999999999999999888888873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.98  E-value=6.7e-05  Score=61.61  Aligned_cols=90  Identities=13%  Similarity=0.029  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          518 CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      ....-+...|++++|..+|+-+ -..| ++..|..|...+...+++++|+..|..+..++++||....+.+.+|...|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            3444556789999999998877 2233 5677888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 006627          596 NDVAGVRRVMKE  607 (638)
Q Consensus       596 ~~A~~~~~~~~~  607 (638)
                      +.|+..|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.95  E-value=1.2e-05  Score=57.13  Aligned_cols=55  Identities=9%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++....+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4578889999999999999999999999999999999999999999987765544

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.95  E-value=0.0001  Score=63.84  Aligned_cols=95  Identities=14%  Similarity=0.018  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      .+..+...+...|++++|...++++ ...|+    ...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4455555566666666666666655 22222    356677777888888888888888888888888888888888888


Q ss_pred             HhcCC--------------HHHHHHHHHHHhhcC
Q 006627          590 AVANR--------------WNDVAGVRRVMKEIR  609 (638)
Q Consensus       590 ~~~g~--------------~~~A~~~~~~~~~~~  609 (638)
                      ...|+              +++|.+++++..+..
T Consensus       117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            88776              566666666665443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.95  E-value=1.6e-05  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=27.8

Q ss_pred             ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC
Q 006627          241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFP  273 (638)
Q Consensus       241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  273 (638)
                      .+|+.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.95  E-value=2.9e-05  Score=56.12  Aligned_cols=59  Identities=8%  Similarity=0.010  Sum_probs=53.7

Q ss_pred             HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...+.+.++++.|..+++++++++|+++..+...|.+|...|++++|.+.++...+..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            35678899999999999999999999999999999999999999999999999886655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=0.00013  Score=71.05  Aligned_cols=102  Identities=12%  Similarity=-0.037  Sum_probs=80.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG  527 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  527 (638)
                      ....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++  -.+.+...|..+..++...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence            3456677899999999999999864 44567888888999999999999999999986  23345677888899999999


Q ss_pred             ChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627          528 LLDEAHEMIKSM-PLRPNMIVWGALL  552 (638)
Q Consensus       528 ~~~~A~~~~~~~-~~~p~~~~~~~l~  552 (638)
                      ++++|+..|+++ ...|+.......+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999887 5666544443333

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.90  E-value=0.024  Score=54.14  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCch-hHHHHHHHHH
Q 006627          378 TMVGLLSLCTEAGALEMGKWLHTYIEKQG-LEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YRDIC-MWNAMMAGYG  453 (638)
Q Consensus       378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~  453 (638)
                      .|...+++..+..-++.|..+|-++.+.+ +.+++.++++++..++. |+..-|..+|+-..  -+|.. -.+..+.-+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44556666667777888888888888877 56778888888876654 67777888887544  33433 3345566667


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          454 MHGCGEEALIFFVDMERSGVKPN--GITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      ..|+-+.|..+|+..... +..+  ...|..++..-..-|+...+..+-+++.+
T Consensus       478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            778888888888765543 2333  35677777777777888777777666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.89  E-value=0.00032  Score=58.01  Aligned_cols=113  Identities=12%  Similarity=0.148  Sum_probs=97.8

Q ss_pred             HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      ++..+.....|++..-..|..++.+.|+..+|...|++.   .+.-|......+.++....+++..|...++++.+.+|.
T Consensus        77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            344444466788888889999999999999999999988   35567888899999999999999999999999999995


Q ss_pred             --CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          578 --NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       578 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                        .|.....++.+|...|++++|+..|+...+..+.+.
T Consensus       157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence              678899999999999999999999999887665543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.88  E-value=0.049  Score=56.84  Aligned_cols=513  Identities=10%  Similarity=0.003  Sum_probs=244.9

Q ss_pred             HhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH--HcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhH
Q 006627           47 IKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKAC--AQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVS  124 (638)
Q Consensus        47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  124 (638)
                      ...+++..|.....++.++  .|+. .|..+++++  .+.|..++|..+++.....+.. |..+...+-..|.+.++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            3456677777777777664  2332 344445543  4667777777777766655533 66677777777777777777


Q ss_pred             HHHHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccC----------chHHHH
Q 006627          125 ARYLFDEMPN--RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVA----------DVDLGK  192 (638)
Q Consensus       125 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------~~~~a~  192 (638)
                      |..+++...+  |+......+.-+|.|.+++.+-.+.--+|-+. .+-+...|-++++.....-          -+..|.
T Consensus        96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            7777777665  44333334445556655554433332222221 2223334444444332110          112344


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhc-cC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 006627          193 AIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNR-LN----QNSVVSWTVMISGYIRCNEINEGVRLFAEMI  267 (638)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  267 (638)
                      ...+.+.+.+ +.-.+..-...-...+...|++++|..++.. ..    ..+...-+--+..+...+++.+..++-.++.
T Consensus       175 ~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  175 KMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            4444444444 1101222222333445566778888777732 11    2223333455666777788888888887777


Q ss_pred             HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHH
Q 006627          268 EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNA  346 (638)
Q Consensus       268 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  346 (638)
                      .+|  +|.  |...+..            +++-+.....+| ...      .+...+..+...+...+.... ....|-+
T Consensus       254 ~k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA  310 (932)
T KOG2053|consen  254 EKG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLA  310 (932)
T ss_pred             HhC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence            764  332  3322221            111111111111 111      111122233333333222211 1111212


Q ss_pred             HHH---HHHhcCCHHHHHHHHHHHHHcCcCC----Chh---------hHHHHHHHHhccC-chHHHHHHHHHHHHhCCCC
Q 006627          347 VIS---AYAQAHCIDKAFELFIHMKVSKVRP----NEV---------TMVGLLSLCTEAG-ALEMGKWLHTYIEKQGLEV  409 (638)
Q Consensus       347 li~---~~~~~~~~~~a~~~~~~m~~~g~~p----~~~---------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~  409 (638)
                      -+.   -+-.-|+.+++...|-+  +-|-.|    |..         -...++..+.... +.....+.++.        
T Consensus       311 ~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~--------  380 (932)
T KOG2053|consen  311 RLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ--------  380 (932)
T ss_pred             HHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH--------
Confidence            122   22234556555443322  112111    111         1122222222211 11111111111        


Q ss_pred             cccHHHHHHHHHHhcCC-----HHHHHHH-------HHcCC------CC------Cc---hhHHHHHHHHHhcCChH---
Q 006627          410 DVILKTALVDMYAKCGD-----VNGAYRL-------FSEAI------YR------DI---CMWNAMMAGYGMHGCGE---  459 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~-----~~~A~~~-------~~~~~------~~------~~---~~~~~l~~~~~~~~~~~---  459 (638)
                          +.+.+....-.|.     -+.-..+       |+.-.      -|      +.   .+.+.|+..+.+.++..   
T Consensus       381 ----h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~  456 (932)
T KOG2053|consen  381 ----HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLF  456 (932)
T ss_pred             ----HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence                0111111111111     0111111       11110      11      11   25667788888888765   


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      +|+-+++.-.... +-|..+-..+++.|+-.|-...|.+.|+.+--+ .+.-|...|. +..-+...|++..+...++..
T Consensus       457 eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~  533 (932)
T KOG2053|consen  457 EAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEH  533 (932)
T ss_pred             HHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence            4555566555543 456677778889999999999999999988654 5555554432 345566778888888887765


Q ss_pred             -CC-CCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          540 -PL-RPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEP----QNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       540 -~~-~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                       .+ ..+ ..+-..+..+ .+.|.+.+-.+...-=-.++-    .-..+-......+...++.++-...+..|+
T Consensus       534 lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  534 LKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             HHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence             11 111 1222233333 456766655443321111211    112334566777888888888888888776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.87  E-value=0.00013  Score=62.92  Aligned_cols=93  Identities=12%  Similarity=-0.162  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN  587 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  587 (638)
                      ...+..++..+...|++++|...++++ ...|+    ..++..+...+...|++++|+..++++++++|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            445566666777778888888887776 22222    3477888888999999999999999999999998888888888


Q ss_pred             HHH-------hcCCHHHHHHHHHHH
Q 006627          588 IYA-------VANRWNDVAGVRRVM  605 (638)
Q Consensus       588 ~~~-------~~g~~~~A~~~~~~~  605 (638)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888888666665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.86  E-value=0.00071  Score=68.97  Aligned_cols=121  Identities=15%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627          458 GEEALIFFVDMERSGVKPNG-ITFIGLLNACSHA--------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL  528 (638)
Q Consensus       458 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  528 (638)
                      ...|..+|++..+.  .|+. ..+..+..++...        .+...+.+...+.......+.+...+..+.......|+
T Consensus       358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            56777788887775  4544 4454444333211        11233333333322210123344555555555555677


Q ss_pred             hHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          529 LDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       529 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      +++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus       436 ~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            77777777766 45566666666777777777777777777777777777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.86  E-value=0.025  Score=53.02  Aligned_cols=242  Identities=15%  Similarity=0.106  Sum_probs=157.6

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCChh--hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627          352 AQAHCIDKAFELFIHMKVSKVRPNEV--TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       352 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      .-.|+++.|.+-|+.|..   .|...  -...|.-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.
T Consensus       131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~  206 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG  206 (531)
T ss_pred             HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence            345777777777777764   22222  22334444456677777777776665543 4445566777777888888888


Q ss_pred             HHHHHHcCC-----CCCch--hHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHH
Q 006627          430 AYRLFSEAI-----YRDIC--MWNAMMAGY---GMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       430 A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~  498 (638)
                      |+++++.-.     .+++.  .--.|+.+-   .-..+...|...-.+..+  +.||.. .-..-..++.+.|+..++-.
T Consensus       207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence            888876432     33332  111222211   112345566665555443  467663 44555678899999999999


Q ss_pred             HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      +++.+-+   ..|.+.++...  ...+.|+..  +.-+++.    ..+|| .........+....|++..|..-.+.+..
T Consensus       285 ilE~aWK---~ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r  357 (531)
T COG3898         285 ILETAWK---AEPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR  357 (531)
T ss_pred             HHHHHHh---cCCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            9999864   45666554322  334555543  3333333    34554 56777778888899999999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 006627          574 IEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKE  607 (638)
Q Consensus       574 ~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  607 (638)
                      ..|. ..+|.+|+++-... ||-.++...+-+..+
T Consensus       358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            9998 57899999997776 999999998886654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.83  E-value=0.00033  Score=65.77  Aligned_cols=133  Identities=10%  Similarity=0.123  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL  522 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  522 (638)
                      +|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+  .+..+...|...++.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence            57777788888888888888888888543 3344555555444 3335677779999999987  456667778888888


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          523 LGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      +.+.|+.+.|..+|++. ..-|.    ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            89999999999999887 32333    34888888888899999999999999998888743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.78  E-value=7.3e-05  Score=52.44  Aligned_cols=61  Identities=21%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          519 MVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      +...+...|++++|.+.|+++ ...| +...+..+...+...|++++|...++++++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456677888888888888887 4456 577888888999999999999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.77  E-value=0.00028  Score=54.07  Aligned_cols=92  Identities=21%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN  560 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  560 (638)
                      +...+...|++++|...++++.+  ..+.+...+..+..++...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            33344444555555555555443  11222234444455555555555555555544 2222 23455555555666666


Q ss_pred             hHHHHHHHHHHhccCC
Q 006627          561 PSMGEIAATQILEIEP  576 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p  576 (638)
                      ++.|...++++++..|
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            6666666666666555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.77  E-value=1.9e-05  Score=46.29  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 006627          568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG  600 (638)
Q Consensus       568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  600 (638)
                      ++++++++|+++.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999963

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.77  E-value=0.039  Score=52.50  Aligned_cols=106  Identities=20%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627          312 MANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA  391 (638)
Q Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  391 (638)
                      +.+..+.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-.++-..      +-++..|..++.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            4455566667778888888888887777778888888888888888776654321      2245777788888888888


Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 006627          392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRL  433 (638)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  433 (638)
                      ..+|..+...+          .+..-+..|.++|++.+|.+.
T Consensus       253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            87777776551          124556777888887777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.75  E-value=0.00087  Score=58.06  Aligned_cols=129  Identities=11%  Similarity=0.034  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN--GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      ..+..+...+...|++++|...+++..+....+.  ...+..+...+.+.|++++|...+++..+.  .+.+...+..+.
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg  113 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence            3455556666666777777777776665432221  245666666666667777777776666642  222334444555


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          521 DLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      .++...|+...+..-++.+                  ...+++|.+.++++++.+|++   +..++..+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            5555555544444322221                  112677889999999999987   5555555555444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.72  E-value=0.00024  Score=65.38  Aligned_cols=87  Identities=8%  Similarity=-0.085  Sum_probs=51.6

Q ss_pred             HhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCH
Q 006627          524 GRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRW  595 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~  595 (638)
                      .+.|++++|...|+.. ...|+    +..+..+...+...|++++|...|+++++..|++   +.++..++.++...|++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            3445555555555544 22232    2345556666667777777777777777666654   34455556667777777


Q ss_pred             HHHHHHHHHHhhcCC
Q 006627          596 NDVAGVRRVMKEIRV  610 (638)
Q Consensus       596 ~~A~~~~~~~~~~~~  610 (638)
                      ++|.++|+.+.+..+
T Consensus       234 ~~A~~~~~~vi~~yP  248 (263)
T PRK10803        234 AKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHHHHHHHCc
Confidence            777777776655444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.68  E-value=0.0056  Score=55.99  Aligned_cols=173  Identities=13%  Similarity=0.007  Sum_probs=98.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCC--Cc-h---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYR--DI-C---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-  489 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~--~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-  489 (638)
                      ....+...|++++|.+.|+++...  +. .   ..-.++.++.+.+++++|...+++..+....-...-+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            334445567777777777665522  11 1   1123456667777777777777777765211111233333333221 


Q ss_pred             -c---------------Cc---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHH
Q 006627          490 -A---------------GL---VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA  550 (638)
Q Consensus       490 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  550 (638)
                       .               .|   ...|.+.|+.+++++   |+.             .-..+|...+..+...- ..--..
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~l-a~~e~~  180 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRL-AKYELS  180 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence             1               11   223445555555432   222             22333333333221000 001113


Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +...|.+.|.+..|..-++.+++..|+.   +.+...++.+|...|..++|.++.+.+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4566888999999999999999988874   4567788999999999999999887664

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.67  E-value=0.00011  Score=54.64  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 006627          455 HGCGEEALIFFVDMERSGVK-PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       455 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++..    ...| +......+..++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            46777777777777765321 23344555677777777777777777662    1222 223334456677777777777


Q ss_pred             HHHHHh
Q 006627          533 HEMIKS  538 (638)
Q Consensus       533 ~~~~~~  538 (638)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            776654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.65  E-value=0.064  Score=51.57  Aligned_cols=202  Identities=16%  Similarity=0.089  Sum_probs=117.4

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-------HHHHHHh-c---cCchHHHHHHHHHHHHhCCCC
Q 006627          341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-------GLLSLCT-E---AGALEMGKWLHTYIEKQGLEV  409 (638)
Q Consensus       341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~-~---~~~~~~a~~~~~~~~~~~~~~  409 (638)
                      ..++..++....+.++..+|.+.+.-+...  .|+...-.       .+.+..+ .   ..+...-..+|+.....++..
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            446777788888888888888887766542  34333111       1112222 1   112233344555555544322


Q ss_pred             cccHHHHHH---HHHHhcCC-HHHHHHHHHcCC---CCCchhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCC
Q 006627          410 DVILKTALV---DMYAKCGD-VNGAYRLFSEAI---YRDICMWNAMM----AGYGM---HGCGEEALIFFVDMERSGVKP  475 (638)
Q Consensus       410 ~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~~~~p  475 (638)
                       ......|+   +-+-+.|. -++|..+++.+.   .-|...-|...    .+|.+   ......-+.+-+-..+.|++|
T Consensus       376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence             12222222   23445555 777888887766   23444433332    22322   223445555555566778777


Q ss_pred             cH----HHHHHHHHH--HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627          476 NG----ITFIGLLNA--CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG  549 (638)
Q Consensus       476 ~~----~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  549 (638)
                      -.    ..-+.|..+  +...|++.++.-+-.-+.   .+.|++.+|..++-++....++++|.+++.++|  |+..+++
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d  529 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD  529 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence            43    333344333  457899999887766554   678999999999999999999999999999885  4555554


Q ss_pred             H
Q 006627          550 A  550 (638)
Q Consensus       550 ~  550 (638)
                      .
T Consensus       530 s  530 (549)
T PF07079_consen  530 S  530 (549)
T ss_pred             H
Confidence            3

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.62  E-value=7.7e-05  Score=52.95  Aligned_cols=62  Identities=23%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             hcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          525 RAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      ..|++++|+++|+++ ...| +...+..+...+...|++++|...++++...+|+++..+..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            345555555555554 2223 4455555556666666666666666666666666555544443

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.60  E-value=0.0025  Score=65.13  Aligned_cols=135  Identities=11%  Similarity=0.117  Sum_probs=95.8

Q ss_pred             CCCCcHHHHHHHHHHHhc--c---CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 006627          472 GVKPNGITFIGLLNACSH--A---GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRA--------GLLDEAHEMIK  537 (638)
Q Consensus       472 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~  537 (638)
                      +.+.|...|..++++...  .   ++...|..+|+++++   ..|+. ..+..+..++...        ++...+.+...
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345677788888877432  2   347789999999985   45664 3444443333221        22344555555


Q ss_pred             hC---C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          538 SM---P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       538 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +.   + ...++..+..+.-.....|++++|...++++++++|. ...|..+|.++...|+.++|.+.+++...-.+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            53   1 2335567777766667789999999999999999995 78999999999999999999999998865444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.58  E-value=0.0036  Score=59.15  Aligned_cols=147  Identities=14%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhc
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERS----GVKPN--GITFIGLLNACSH  489 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~  489 (638)
                      .+..|...|++..|-+.+.+           +...|... |++++|++.|++..+.    | .+.  ..++..+...+.+
T Consensus       100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence            34556666776666655433           55556565 6777777777765532    2 222  1346667777888


Q ss_pred             cCcHHHHHHHHHHHhhhcCCC-----CCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HhhHHHHHHHHh
Q 006627          490 AGLVTEGKSVFDKMVHGLGLV-----PKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN------MIVWGALLAASK  556 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~-----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~  556 (638)
                      .|++++|.++|++.... ...     .+. ..+-..+-++...|+...|.+.+++. ...|.      ......++.++-
T Consensus       168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            88888888888887653 221     112 12233344666678888888888776 23332      234455555554


Q ss_pred             hc--CChHHHHHHHHHHhccCC
Q 006627          557 LH--KNPSMGEIAATQILEIEP  576 (638)
Q Consensus       557 ~~--~~~~~A~~~~~~~~~~~p  576 (638)
                      ..  ..++.++.-|..+..++|
T Consensus       247 ~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  247 EGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             TT-CCCHHHHCHHHTTSS---H
T ss_pred             hCCHHHHHHHHHHHcccCccHH
Confidence            32  234555555555555444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.55  E-value=0.00012  Score=42.24  Aligned_cols=31  Identities=32%  Similarity=0.693  Sum_probs=25.0

Q ss_pred             ccHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 006627          241 VSWTVMISGYIRCNEINEGVRLFAEMIEENV  271 (638)
Q Consensus       241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  271 (638)
                      ++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3688888888888888888888888887763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.55  E-value=0.00011  Score=42.43  Aligned_cols=31  Identities=48%  Similarity=0.694  Sum_probs=26.6

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006627          138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDI  168 (638)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  168 (638)
                      .+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4789999999999999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.54  E-value=0.0036  Score=53.99  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--NGITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      .|..+...+...|++++|+..+++.......|  ...++..+...+...|++++|.+.+++..+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555556666666666666665442122  123566666666666777777776666654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.53  E-value=0.0012  Score=52.13  Aligned_cols=85  Identities=13%  Similarity=-0.046  Sum_probs=57.7

Q ss_pred             HHHHHhcCChHHHHHHHHhC---CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 006627          520 VDLLGRAGLLDEAHEMIKSM---PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAV  591 (638)
Q Consensus       520 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~  591 (638)
                      ..++-..|+.++|+.++++.   +....  ...+..+..++...|++++|..++++.++..|+   +......++.++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            34455566666666666655   21111  345556677777888888888888888887777   66667777778888


Q ss_pred             cCCHHHHHHHHHH
Q 006627          592 ANRWNDVAGVRRV  604 (638)
Q Consensus       592 ~g~~~~A~~~~~~  604 (638)
                      .|++++|++.+-.
T Consensus        88 ~gr~~eAl~~~l~  100 (120)
T PF12688_consen   88 LGRPKEALEWLLE  100 (120)
T ss_pred             CCCHHHHHHHHHH
Confidence            8888888876544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.53  E-value=0.02  Score=57.19  Aligned_cols=20  Identities=10%  Similarity=-0.085  Sum_probs=13.4

Q ss_pred             HHhhcCChHHHHHHHHHHhc
Q 006627          554 ASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ++.+.|+..+|.++++++..
T Consensus       826 AfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  826 AFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHhcchHHHHHHHHHhhh
Confidence            44556677777777777654

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.53  E-value=0.09  Score=50.08  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627          413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL  492 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  492 (638)
                      +.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+...      +-.+..|..++.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3344455556667777777777777777777777777777777777766654321      1123556667777777777


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      ..+|..+..++.           +..-+..|.+.|++.+|.+.-.+.
T Consensus       253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            777776665531           133455667777777776665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.52  E-value=0.097  Score=50.39  Aligned_cols=116  Identities=12%  Similarity=0.026  Sum_probs=74.0

Q ss_pred             HhccCc-HHHHHHHHHHHhhhcCCCCChhHHHHHHH----HHHhc---CC---hHHHHHHHHhCCCCCC----HhhHHHH
Q 006627          487 CSHAGL-VTEGKSVFDKMVHGLGLVPKIEHYGCMVD----LLGRA---GL---LDEAHEMIKSMPLRPN----MIVWGAL  551 (638)
Q Consensus       487 ~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~---g~---~~~A~~~~~~~~~~p~----~~~~~~l  551 (638)
                      +.+.|. -++|.++++.+.+  --+-|...-+.+..    .|...   ..   .-+-..++++.++.|-    ...-+.|
T Consensus       389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L  466 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL  466 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            445555 6778888877764  12223333222221    11111   11   1222334455555552    3344445


Q ss_pred             HHH--HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          552 LAA--SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       552 ~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      ..+  ...+|++.++.-...=+.+..| ++.+|.++|-++....+|++|.++++.+
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            433  4679999999988888889999 6999999999999999999999999866

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.49  E-value=0.012  Score=48.38  Aligned_cols=91  Identities=8%  Similarity=-0.121  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      -.+..-+...|++++|..+|+-+..-. +-+..-|..|..+|-..|++++|+..|.....  --+.++..+-.+..++..
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHH
Confidence            334444455566666666666555432 22334455555555556666666666666554  112344555555566666


Q ss_pred             cCChHHHHHHHHhC
Q 006627          526 AGLLDEAHEMIKSM  539 (638)
Q Consensus       526 ~g~~~~A~~~~~~~  539 (638)
                      .|+.+.|.+.|+..
T Consensus       116 lG~~~~A~~aF~~A  129 (157)
T PRK15363        116 CDNVCYAIKALKAV  129 (157)
T ss_pred             cCCHHHHHHHHHHH
Confidence            66666666655543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.49  E-value=0.0011  Score=50.27  Aligned_cols=80  Identities=14%  Similarity=0.002  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCc-cCChHhHHHHHHHhcccC--------ChhhHHHHHHHHHHhcCCCchhhH
Q 006627          243 WTVMISGYIRCNEINEGVRLFAEMIEENV-FPSEITILSLIIECGFVG--------GLQLGKWLHAYILRNGFEFSLAMA  313 (638)
Q Consensus       243 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  313 (638)
                      -...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-....+|++|+..+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456667777999999999999999999 999999999999887653        244567889999999999999999


Q ss_pred             HHHHHHHHh
Q 006627          314 NALVDMYGK  322 (638)
Q Consensus       314 ~~l~~~~~~  322 (638)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            999887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.47  E-value=0.00023  Score=50.62  Aligned_cols=64  Identities=19%  Similarity=0.137  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC-ChHHHHHHHHHHhccCC
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK-NPSMGEIAATQILEIEP  576 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p  576 (638)
                      ...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            455666777777777777777777766 3445 4667777888888888 68899999999988887

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.46  E-value=0.0018  Score=60.84  Aligned_cols=131  Identities=8%  Similarity=0.017  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR-AGLLDEAHEMIKSM--PLRPNMIVWGALLAA  554 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  554 (638)
                      .+|..++....+.+..+.|..+|.++.+.  -..+...|-.....-.. .++.+.|.++|+..  .+..+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46788888888999999999999999853  23344555555555333 56777799999988  345578889999999


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ....++.+.|+.+|++++..-|.+.   ..|..++..-.+.|+.+.+.++.+++.+.-.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999877644   5889999999999999999999998876533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.43  E-value=0.021  Score=54.68  Aligned_cols=161  Identities=17%  Similarity=0.074  Sum_probs=95.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC-------CchhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627          416 ALVDMYAKCGDVNGAYRLFSEAIYR-------DICMWNAMMAGYGM---HGCGEEALIFFVDMERSGVKPNGITFIGLLN  485 (638)
Q Consensus       416 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  485 (638)
                      .++-.|....+++...++.+.+...       ....--...-++.+   .|+.++|++++..+....-.+++.+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444455556666666666555533       11112223344555   6788888888888655555777778777776


Q ss_pred             HHhc---------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC----C---CC
Q 006627          486 ACSH---------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLD----EAHEMI---KSM----P---LR  542 (638)
Q Consensus       486 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~  542 (638)
                      .|-.         ....++|...|.+..   .+.|+...--.++..+...|...    +..++-   ..+    +   ..
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            6521         224677888888775   44566543333333444444322    222222   111    1   22


Q ss_pred             CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .+-..+-+++.++.-.||+++|.+.+++++.+.|...
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            3445556788899999999999999999999987753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.42  E-value=0.00021  Score=45.11  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN  587 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  587 (638)
                      .++..+..++...|++++|++.++++++.+|+|+.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788899999999999999999999999999999988875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.39  E-value=0.00068  Score=65.44  Aligned_cols=65  Identities=11%  Similarity=-0.162  Sum_probs=44.6

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY---NVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      +...+..+..++...|++++|+..++++++++|+++..   |..++.+|...|+.++|+..+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35666666777777777777777777777777776643   677777777777777777777766553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0082  Score=54.67  Aligned_cols=117  Identities=12%  Similarity=0.048  Sum_probs=90.6

Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-
Q 006627          464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLLDEAHEMIKSM-  539 (638)
Q Consensus       464 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-  539 (638)
                      -++.-...+ +-|...|..|...|...|+.+.|...|....+  -..+++..+..+..++..+   ....++.++|+++ 
T Consensus       144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            334444443 55678999999999999999999999999987  4455666777777776544   3567899999998 


Q ss_pred             CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      ...| ++.+...|...+...|++.+|...++.+++..|.+.....
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence            5555 5677777888899999999999999999999888654433

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.33  E-value=0.0028  Score=62.00  Aligned_cols=118  Identities=10%  Similarity=0.025  Sum_probs=81.0

Q ss_pred             CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627          307 EFSLAMANALVDMYGKCREIRSARTLFDGMKSK------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV  380 (638)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  380 (638)
                      +.+......+++.+....+++.+..++-+....      -..+..++++.|...|..+.++.+++.=..-|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334444445555555555566666665554421      22345678888888888888888888888888888888888


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627          381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC  424 (638)
Q Consensus       381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (638)
                      .||..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888877776666666655555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.33  E-value=0.0044  Score=60.64  Aligned_cols=82  Identities=9%  Similarity=0.042  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627          242 SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYG  321 (638)
Q Consensus       242 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (638)
                      +..++|+.|.+.|..+.++++++.=..-|+.||..+++.+|..+.+.|++..|.++...|..++...+..++..-+.+|.
T Consensus       105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            34566777777777777777777766677777777777777777777777777777777766665555555544444444


Q ss_pred             hc
Q 006627          322 KC  323 (638)
Q Consensus       322 ~~  323 (638)
                      +.
T Consensus       185 ~~  186 (429)
T PF10037_consen  185 KY  186 (429)
T ss_pred             Hh
Confidence            43

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.32  E-value=0.0015  Score=49.45  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=68.9

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcccHHHHHHHHHccc--------CchHHHHHHHHHHHhCCCCChh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGS-EVDNFTIPTILKACAQVL--------MTHLGKEIHGFAIKNGLDGDAY  107 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~  107 (638)
                      .+-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..++.        ..-....+++.|+..++.|+..
T Consensus        26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e  105 (120)
T PF08579_consen   26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence            4455667777777999999999999999999 899999999999987653        2344778899999999999999


Q ss_pred             HHHHHHHhhhc
Q 006627          108 VSNALIQMYSE  118 (638)
Q Consensus       108 ~~~~li~~~~~  118 (638)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.32  E-value=0.011  Score=55.83  Aligned_cols=127  Identities=12%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCH
Q 006627          479 TFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSMP---L-----RPNM  545 (638)
Q Consensus       479 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~  545 (638)
                      .+..+...|... |++++|.+.|++...-+.....    ...+..+...+.+.|++++|.++|++..   .     +.+.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            444555678777 8999999999988763322222    2456677888999999999999998871   1     1122


Q ss_pred             -hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc-----chHHHHHHHHHhc--CCHHHHHHHHHHH
Q 006627          546 -IVWGALLAASKLHKNPSMGEIAATQILEIEPQNY-----GYNVLMSNIYAVA--NRWNDVAGVRRVM  605 (638)
Q Consensus       546 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~--g~~~~A~~~~~~~  605 (638)
                       ..+...+-.+...||...|...+++..+.+|.-.     .....|..++-..  ..+++|+.-|+.+
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence             1223334455678999999999999999998522     2334455555432  4566666666544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.27  Score=50.57  Aligned_cols=112  Identities=21%  Similarity=0.179  Sum_probs=70.8

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH  489 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  489 (638)
                      ...+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.      .+.-|.-+..+|.+
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~  756 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK  756 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence            333444445556666777777777777777777777777777777777776665544322      13446666777777


Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIK  537 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  537 (638)
                      .|+.++|.+++.+..   +..       ..+.+|.+.|++.+|.+.--
T Consensus       757 ~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  757 QGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             cccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence            777777777766553   111       35566677777777666543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.083  Score=50.17  Aligned_cols=147  Identities=12%  Similarity=-0.013  Sum_probs=75.6

Q ss_pred             HhcCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCC
Q 006627          453 GMHGCGEEALIFFVDMERS---GVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGL  528 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  528 (638)
                      .+.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+.++|+.-.++..+   +.|. +..+..-..++.-.++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777666642   2233444455555566667777777776666653   2222 1222223345555667


Q ss_pred             hHHHHHHHHhC-CCCCC---HhhHHHHHHHHh---------------hcCChHHHHHHHHHHhccCCCCc--------ch
Q 006627          529 LDEAHEMIKSM-PLRPN---MIVWGALLAASK---------------LHKNPSMGEIAATQILEIEPQNY--------GY  581 (638)
Q Consensus       529 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~---------------~~~~~~~A~~~~~~~~~~~p~~~--------~~  581 (638)
                      +++|++.+++. ....+   ..++.....+..               ...+.+.-...-..++...|+-.        .-
T Consensus       337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~k  416 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAK  416 (486)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHH
Confidence            77777776665 21111   122222211111               11222222222233444555421        23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 006627          582 NVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       582 ~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      +...+.+|...+++.++.+..
T Consensus       417 FkevgeAy~il~d~~kr~r~d  437 (486)
T KOG0550|consen  417 FKEVGEAYTILSDPMKRVRFD  437 (486)
T ss_pred             HHHHHHHHHHhcCHHHHhhcc
Confidence            567889999999999988864

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.30  E-value=0.0021  Score=60.19  Aligned_cols=128  Identities=12%  Similarity=-0.046  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHh---hhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCCHh
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMV---HGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-------PL-RPNMI  546 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~  546 (638)
                      .|..|...|.-.|+++.|+...+.-.   +.+|-.. ....+..+..++.-.|+++.|.+.++..       +. .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555566778888877654322   2233332 2355677888888889999888888764       11 12344


Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEI----E--PQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ...+|.++|....++++|+...++-+.+    +  -....++..|+.+|...|..++|+.+.++-.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5566777887778888888887776542    2  1245678889999999999999988766553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.27  E-value=0.18  Score=47.65  Aligned_cols=253  Identities=12%  Similarity=0.057  Sum_probs=166.6

Q ss_pred             HHHHHHHHH--hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCcccH--HHHH
Q 006627          344 WNAVISAYA--QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL--CTEAGALEMGKWLHTYIEKQGLEVDVIL--KTAL  417 (638)
Q Consensus       344 ~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l  417 (638)
                      |..|-.++.  ..|+-..|.+.-.+-... +..|......++.+  -.-.|+++.|.+-|+.|..   .|....  ...|
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL  160 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL  160 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence            444444443  346666666655543321 34555556666654  3457999999999999986   333322  3444


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH--HHHHHHHHHh---
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGI--TFIGLLNACS---  488 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~---  488 (638)
                      .-.-.+.|..+.|..+-++.-..   -.-.+...+...|..|+++.|+++++.-++.. +.++..  .-..|+.+-.   
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            44556789999998888765522   33467888999999999999999999876543 344442  2333433321   


Q ss_pred             ccCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHH-H
Q 006627          489 HAGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMG-E  565 (638)
Q Consensus       489 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A-~  565 (638)
                      -..+...|...-.+..   ++.|+...-. .-..+|.+.|+..++-.+++.+ +..|-+..+..+.  +.+.|+.... .
T Consensus       241 ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl  315 (531)
T COG3898         241 LDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL  315 (531)
T ss_pred             hcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence            1224555555544443   5677754332 3347889999999999999998 6677777664443  4456664322 3


Q ss_pred             HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          566 IAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      +-.+++.++.|++......++.+-...|++..|..--+..
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            4455666799999999999999999999998887766554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.011  Score=52.13  Aligned_cols=152  Identities=14%  Similarity=0.048  Sum_probs=115.4

Q ss_pred             hHHHHhhhhh--hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhC---
Q 006627           27 FSYTNIINPL--TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNG---  101 (638)
Q Consensus        27 ~~A~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---  101 (638)
                      ++.++.+.+-  ..-+.+++.+.-.|.+.-.++.+.+.+++..+.++.....+.+...+.||.+.|...|+...+..   
T Consensus       166 ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL  245 (366)
T KOG2796|consen  166 ESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL  245 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence            5555555444  66678888889999999999999999998777788888888888999999999999999776542   


Q ss_pred             --CCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHH
Q 006627          102 --LDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMI  176 (638)
Q Consensus       102 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~  176 (638)
                        ++.+..+.......+.-++++..|...+.+++.   .|+..-|.-.-+..-.|+..+|++.++.|++.  .|...+-.
T Consensus       246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence              344445555555667777899999999988876   34555565555666789999999999999984  56666655


Q ss_pred             HHHH
Q 006627          177 SMVS  180 (638)
Q Consensus       177 ~ll~  180 (638)
                      +++-
T Consensus       324 s~~~  327 (366)
T KOG2796|consen  324 SVLF  327 (366)
T ss_pred             hHHH
Confidence            4443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0046  Score=58.48  Aligned_cols=94  Identities=12%  Similarity=-0.012  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      ..+..+..++.+.+++.+|++...+. .. ++|...+..-..++...|+++.|+..|+++++++|+|-.+...|..+--+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45677888999999999999999887 33 45788888888999999999999999999999999999999999999888


Q ss_pred             cCCHHHH-HHHHHHHhh
Q 006627          592 ANRWNDV-AGVRRVMKE  607 (638)
Q Consensus       592 ~g~~~~A-~~~~~~~~~  607 (638)
                      ..++.+. .+.|..|-.
T Consensus       338 ~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            8877776 668998854

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.19  E-value=0.0097  Score=48.00  Aligned_cols=91  Identities=10%  Similarity=-0.013  Sum_probs=67.6

Q ss_pred             HHHHHhcCChHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 006627          520 VDLLGRAGLLDEAHEMIKSM----PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG---YNVLMSNIYAV  591 (638)
Q Consensus       520 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~  591 (638)
                      .....+.|++++|.+.|+.+    +..| ...+...++.++...+++++|...+++.++++|.++.   ++...|-++..
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            34455678888888887777    2222 3456677888999999999999999999999998754   45666666777


Q ss_pred             cCC---------------HHHHHHHHHHHhhcCC
Q 006627          592 ANR---------------WNDVAGVRRVMKEIRV  610 (638)
Q Consensus       592 ~g~---------------~~~A~~~~~~~~~~~~  610 (638)
                      ...               ..+|...|+.+.+.-+
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP  130 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP  130 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence            766               7788888888776554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.16  E-value=0.0054  Score=56.52  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHhhHHHHH
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP----NMIVWGALL  552 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~  552 (638)
                      .|...+....+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+ ...|    ....+..+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444556777888877777776432111 1245556777777888888888887776 2223    255666667


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      ..+...|+.++|...++++++..|++..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            7788889999999999999999998654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.12  E-value=0.13  Score=51.67  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=100.5

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCH
Q 006627           93 IHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSE  172 (638)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  172 (638)
                      -++++.+.|-.|+...   +...++-.|.+.+|-++|.+                  .|.-..|+++|.+|+--      
T Consensus       622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------  674 (1081)
T KOG1538|consen  622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------  674 (1081)
T ss_pred             HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH------
Confidence            3566677776677654   34556667888888888754                  45555555555554321      


Q ss_pred             hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHh
Q 006627          173 VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIR  252 (638)
Q Consensus       173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  252 (638)
                          -..+-+...|+.++-+.+...-.+-..+.+ .+   .+....+...|+.++|..+.                  ..
T Consensus       675 ----D~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP---kaAAEmLiSaGe~~KAi~i~------------------~d  728 (1081)
T KOG1538|consen  675 ----DYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP---KAAAEMLISAGEHVKAIEIC------------------GD  728 (1081)
T ss_pred             ----HHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc---HHHHHHhhcccchhhhhhhh------------------hc
Confidence                011222233333333333322221111100 01   22333444555555555442                  23


Q ss_pred             CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 006627          253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL  332 (638)
Q Consensus       253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  332 (638)
                      +|-.+-+.++-+++..    .+..+...+..-+-+...+..|.++|..|-+.         .+++..+...++|++|..+
T Consensus       729 ~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal  795 (1081)
T KOG1538|consen  729 HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL  795 (1081)
T ss_pred             ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence            3444444444433322    22333333333344455556666666655332         4677778888888888888


Q ss_pred             HhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006627          333 FDGMKSKDVMIWNAVISAYAQAHCIDKAF  361 (638)
Q Consensus       333 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~  361 (638)
                      -++.++--...|-...+-++...++++|.
T Consensus       796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAq  824 (1081)
T KOG1538|consen  796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQ  824 (1081)
T ss_pred             hhhCccccccccchHHHHhhhhhhHHHHH
Confidence            88877643333333333344444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.06  E-value=0.0018  Score=46.58  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      ..|.+.+++++|.++++++ ...| ++..|......+...|++++|...++++++..|+++......
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            4567778888888888777 4444 466777778888888999999999999999999876655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.45  Score=48.51  Aligned_cols=19  Identities=11%  Similarity=0.029  Sum_probs=10.3

Q ss_pred             HHHHHHHhcCChHHHHHHH
Q 006627          518 CMVDLLGRAGLLDEAHEMI  536 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~  536 (638)
                      .|.+-....|..+.|++.-
T Consensus      1026 ilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred             HHHHHHHHhchHHHHHHHH
Confidence            3334445566666666653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.05  E-value=0.027  Score=50.16  Aligned_cols=50  Identities=8%  Similarity=-0.073  Sum_probs=40.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHH
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAG  600 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~  600 (638)
                      +...|.+.|.+..|..-++.+++..|+.+   .+...++.+|.+.|..+.|..
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            45678899999999999999999999854   456788999999999985543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.49  Score=48.77  Aligned_cols=325  Identities=11%  Similarity=0.034  Sum_probs=171.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH---hcCCCchhhHHHHHHHH
Q 006627          244 TVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR---NGFEFSLAMANALVDMY  320 (638)
Q Consensus       244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~  320 (638)
                      ..+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+   ... .....|..+.+--
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~-~~~iSy~~iA~~A  517 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKL-TPGISYAAIARRA  517 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence            446777777788888888777764432221 444544444444433221 1222222222   112 2334455566666


Q ss_pred             HhcCChHHHHHHHhcCCCC--------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          321 GKCREIRSARTLFDGMKSK--------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       321 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      -..|+.+-|..+++.=+..        +..-+...+.-....|+++....++-.+...   .+...|...+      .+.
T Consensus       518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~  588 (829)
T KOG2280|consen  518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ  588 (829)
T ss_pred             HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence            6788888888887654322        2223444455556666666666666555432   1111221111      123


Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC------CCCCchhHHHHHHHHHhcCCh--------
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA------IYRDICMWNAMMAGYGMHGCG--------  458 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~~--------  458 (638)
                      ..|..++.+..+..   +.   ..+-+.|....+..++-.+.-+-      ..+-..........+.+....        
T Consensus       589 p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  589 PLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             hhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence            33444444443311   00   11112222222222221111110      111112222333344433321        


Q ss_pred             --HHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627          459 --EEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM  535 (638)
Q Consensus       459 --~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  535 (638)
                        .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-++..     -||...|..-+.++...+++++-.++
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf  737 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF  737 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence              111222222221 2323334445555566677788888888766553     37888888888999999999998888


Q ss_pred             HHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          536 IKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       536 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      -+..+   .+.-|.-+..+|.+.|+.++|.+.+-+.-.+        ...+.+|.+.|++.+|.+.-
T Consensus       738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence            87764   2556666788899999999988776654332        26788899999999988753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.04  E-value=0.47  Score=48.38  Aligned_cols=60  Identities=13%  Similarity=0.058  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                      .|.+|.+--...|..+.|++.--.+.. ..+-|....|..+.-+-+....+...-+.|-++
T Consensus      1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence            344444555556777777665443332 234555666666655555444444444444333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.00  E-value=0.012  Score=49.30  Aligned_cols=115  Identities=12%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGL--VPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A  564 (638)
                      ....++.+.+...++++..-+.-  -|+...          ..........++..    -..+...++..+...|+++.|
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence            34566777777777777653211  111111          11222222233322    123555677778899999999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCcCCCC
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE-----IRVKKEPG  615 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~  615 (638)
                      ...+++++..+|-+...|..+..+|...|+..+|.++|+++.+     -|+.|+|.
T Consensus        82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            9999999999999999999999999999999999999998853     46666654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.0046  Score=55.51  Aligned_cols=65  Identities=3%  Similarity=-0.110  Sum_probs=43.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627          549 GALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE  613 (638)
Q Consensus       549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  613 (638)
                      ..|..++...|++++|...|..+.+-.|++   |..+.-|+.+..+.|+.++|...|+.+.++.+...
T Consensus       182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            336667777777777777777777655543   45566777777777777777777777766655443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.98  E-value=0.0012  Score=48.19  Aligned_cols=62  Identities=6%  Similarity=-0.043  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEI----EPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .++..+...+...|++++|+..+++++++    .++   -..++..++.+|...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45666777777888888888888887753    222   245688899999999999999999887653

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.91  E-value=0.031  Score=44.32  Aligned_cols=89  Identities=13%  Similarity=0.052  Sum_probs=55.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC---cccHHHHHHHHH
Q 006627          347 VISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV---DVILKTALVDMY  421 (638)
Q Consensus       347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  421 (638)
                      +..++-..|+.++|+.+|++....|.....  ..+..+-..+...|++++|..+++...... +.   +......+..++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence            455667778888888888888777755442  244455567777888888888887776542 11   222222333455


Q ss_pred             HhcCCHHHHHHHHHc
Q 006627          422 AKCGDVNGAYRLFSE  436 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~  436 (638)
                      ...|+.++|.+.+-.
T Consensus        86 ~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   86 YNLGRPKEALEWLLE  100 (120)
T ss_pred             HHCCCHHHHHHHHHH
Confidence            666777766666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.064  Score=47.57  Aligned_cols=136  Identities=10%  Similarity=-0.033  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----H
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----C  518 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~  518 (638)
                      .-+.++.++.-.|.+.-.+..+.+.++...+-++.....+.+.-.+.||.+.|..+|++..+. .-..+...++     .
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence            334555556666777777778888887654456667777778888888888888888876553 2222222222     2


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          519 MVDLLGRAGLLDEAHEMIKSMP-LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      ....+.-++++..|...+.+.. ..| ++...+.-.-...-.|+..+|++..+.+.+..|....
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            2334455667777777777763 222 3333333333333457777888888888888877433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.81  E-value=0.0064  Score=52.48  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             hcHHHHHHHHH-----hCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcc----------------cCchHHHHHHH
Q 006627           37 TRYNSLVTSYI-----KNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQV----------------LMTHLGKEIHG   95 (638)
Q Consensus        37 ~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~~~   95 (638)
                      .+|..+++.|.     +.|.++=....+..|.+.|+.-|..+|+.||..+=+.                .+.+-+.++++
T Consensus        48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~  127 (228)
T PF06239_consen   48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLE  127 (228)
T ss_pred             HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHH
Confidence            67777777776     4577777888889999999999999999999876442                24455888899


Q ss_pred             HHHHhCCCCChhHHHHHHHhhhcCCC
Q 006627           96 FAIKNGLDGDAYVSNALIQMYSECGS  121 (638)
Q Consensus        96 ~~~~~~~~~~~~~~~~li~~~~~~~~  121 (638)
                      +|...|+-||..++..++.++++.+.
T Consensus       128 qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  128 QMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHcCCCCcHHHHHHHHHHhccccH
Confidence            99999999999999998888876553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.81  E-value=0.056  Score=48.18  Aligned_cols=142  Identities=10%  Similarity=0.022  Sum_probs=74.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh-HHHHHHHHHH
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVK--PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE-HYGCMVDLLG  524 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~  524 (638)
                      ....+...|++.+|...|+++......  -.......++.++.+.|+++.|...++...+.+.-.|... .+-.++.++.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            344555667777777777776654211  1123455556666677777777777777666543333321 1111111111


Q ss_pred             hcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch-----------------HHHHHH
Q 006627          525 RAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY-----------------NVLMSN  587 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~  587 (638)
                      ..  ....   +                ......+...+|...++.+++..|+++..                 -..++.
T Consensus        91 ~~--~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   91 KQ--IPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             HH--HHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--Cccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10  0000   0                00112233556777777777777776433                 235688


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCC
Q 006627          588 IYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       588 ~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|.+.|.|..|..-++.+.+.-+
T Consensus       150 ~Y~~~~~y~aA~~r~~~v~~~yp  172 (203)
T PF13525_consen  150 FYYKRGKYKAAIIRFQYVIENYP  172 (203)
T ss_dssp             HHHCTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC
Confidence            89999999999999999987654

>PRK11906 transcriptional regulator; Provisional

Probab=96.77  E-value=0.024  Score=55.25  Aligned_cols=144  Identities=11%  Similarity=0.058  Sum_probs=90.1

Q ss_pred             ChHHHHHHHHHHHH-cCCCCcH-HHHHHHHHHHhcc---------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          457 CGEEALIFFVDMER-SGVKPNG-ITFIGLLNACSHA---------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       457 ~~~~A~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      ..+.|+.+|.+... ..+.|+. ..|..+..++...         .+..+|.++.++.++  --+-|......+..++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence            34677788888772 2235554 5677777665432         234455666666654  233455566666666677


Q ss_pred             cCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCHHHHHHH
Q 006627          526 AGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN--IYAVANRWNDVAGV  601 (638)
Q Consensus       526 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~  601 (638)
                      .|+++.|..+|+++ ...|| ..+|..........|+.++|.+.++++++++|.-..+-..-.+  .|+. ...++|+++
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~  429 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL  429 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence            77788888888877 56665 5666666667777888888888888888888875444433333  3444 445566665


Q ss_pred             HH
Q 006627          602 RR  603 (638)
Q Consensus       602 ~~  603 (638)
                      +-
T Consensus       430 ~~  431 (458)
T PRK11906        430 YY  431 (458)
T ss_pred             Hh
Confidence            43

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.74  E-value=0.45  Score=43.62  Aligned_cols=59  Identities=10%  Similarity=0.019  Sum_probs=39.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hH---HHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627          346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TM---VGLLSLCTEAGALEMGKWLHTYIEKQG  406 (638)
Q Consensus       346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~  406 (638)
                      .....+...|++++|.+.|+++...  .|+.. ..   -.+..++.+.++++.|...+++..+..
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3445566778888888888887764  33332 21   234466677888888888888777753

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.69  E-value=0.015  Score=50.27  Aligned_cols=89  Identities=15%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhcc----------------CchHHHH
Q 006627          338 SKDVMIWNAVISAYAQ-----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEA----------------GALEMGK  396 (638)
Q Consensus       338 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~  396 (638)
                      .++-.+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.|++.+=+.                .+.+-|+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            3455666666666653     477777888888899999999999999999877542                2357788


Q ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006627          397 WLHTYIEKQGLEVDVILKTALVDMYAKCGD  426 (638)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  426 (638)
                      +++++|...|+-||..++..|+..+++.+.
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            999999999999999999999999877664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.022  Score=47.66  Aligned_cols=73  Identities=10%  Similarity=0.013  Sum_probs=48.3

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHH-----HhCCCCChhHHH
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI-----KNGLDGDAYVSN  110 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~  110 (638)
                      .....++..+...|+++.|+.++..+.... |.|...+..+|.++...|+...|.+.++.+.     +.|++|++.+-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            444556666677888888888888888764 5567788888888888888888888877764     357777766543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.48  E-value=0.02  Score=44.67  Aligned_cols=90  Identities=17%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN----YGYNVLMSNIYAVANR  594 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~  594 (638)
                      .++...|+.+.|++.|.+. .+.| ....|+.-.+++.-+|+.++|+.-+++++++.-+.    ...|..-+.+|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3556677777777777666 3333 56677777777777888888888888887754332    2356677777888888


Q ss_pred             HHHHHHHHHHHhhcCC
Q 006627          595 WNDVAGVRRVMKEIRV  610 (638)
Q Consensus       595 ~~~A~~~~~~~~~~~~  610 (638)
                      -++|..-|+..-+-|.
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            8888877777655443

>PRK11906 transcriptional regulator; Provisional

Probab=96.48  E-value=0.14  Score=50.11  Aligned_cols=146  Identities=12%  Similarity=-0.006  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHcCC---CCC---chhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627          426 DVNGAYRLFSEAI---YRD---ICMWNAMMAGYGMH---------GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA  490 (638)
Q Consensus       426 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  490 (638)
                      ..+.|..+|.+..   .-|   ...|..+..++...         ....+|.++.++..+.+ +-|+.....+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            3567788888766   334   34555555544332         23456777777777765 56777777777777778


Q ss_pred             CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH---hhHHHHHHHHhhcCChHHHH
Q 006627          491 GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM---IVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       491 ~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~A~  565 (638)
                      ++++.|...|++..   .+.|+. ..|........-.|+.++|.+.+++. ...|..   ......+..|..+ ..+.|+
T Consensus       352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence            88999999998886   456654 45555666667789999999998884 666642   2333333345443 467777


Q ss_pred             HHHHHHhccCC
Q 006627          566 IAATQILEIEP  576 (638)
Q Consensus       566 ~~~~~~~~~~p  576 (638)
                      .+|-+-.+.+.
T Consensus       428 ~~~~~~~~~~~  438 (458)
T PRK11906        428 KLYYKETESES  438 (458)
T ss_pred             HHHhhcccccc
Confidence            77766555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.013  Score=55.47  Aligned_cols=110  Identities=13%  Similarity=0.017  Sum_probs=78.4

Q ss_pred             HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCCh
Q 006627          482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNP  561 (638)
Q Consensus       482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  561 (638)
                      .-...+.+.|++..|..-|++++.-...              .+.-+.++.....     ..-..++..+...+.+.+++
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-----ALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhH
Confidence            3345666777777777777776542110              0111111111111     11234666777788899999


Q ss_pred             HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          562 SMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       562 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..|++...++++++|+|..+++.-|.+|...|+++.|+..|+++.+-.+
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999976544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.6  Score=48.85  Aligned_cols=143  Identities=10%  Similarity=0.031  Sum_probs=71.0

Q ss_pred             hhHHHhhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHH
Q 006627           14 RQCHAHIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLG   90 (638)
Q Consensus        14 ~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   90 (638)
                      ..-.+.+.+.|++++|.+.+-+.   .-=..+|.-|....+...-..+++.+.+.|. -+.+.-..||.+|.+.++.+.-
T Consensus       372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL  450 (933)
T KOG2114|consen  372 RKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL  450 (933)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH
Confidence            34444555667777777655544   2223455566666666666667777777664 3444455666777776666554


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627           91 KEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMR  164 (638)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  164 (638)
                      .+..+... .|..  .+-....+..+.+.+-.++|..+-..... +......+   +-..|++++|++.+..|.
T Consensus       451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence            44433322 1110  01122233333444444444443332222 12222222   223566777777776653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.35  E-value=0.3  Score=38.50  Aligned_cols=140  Identities=9%  Similarity=-0.015  Sum_probs=84.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      .-.|..++..++..+....   .+..-++.++--....-+-+-..++++..-+-|.+.| -.....++.++.+.|.    
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~----   84 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK----   84 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc----
Confidence            3467788888888887764   2333444454444444555666777777654222211 1223344555554443    


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          533 HEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       533 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                                 +.......+.+...+|.-++-.++++.+.+-+..+|....-++.+|.+.|+..++.+++.+.=+.|++
T Consensus        85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence                       34445556677788999999999999988765567899999999999999999999999998887764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.27  E-value=0.006  Score=44.51  Aligned_cols=28  Identities=14%  Similarity=0.233  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      .++..+...|...|++++|+..+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~   33 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALD   33 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3555666666666666666666666553

...

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.25  E-value=1.6  Score=44.22  Aligned_cols=181  Identities=15%  Similarity=0.131  Sum_probs=121.7

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA  486 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  486 (638)
                      +...|..-+..-.+.|+.+.+.-+|++..-|   -...|--.+.-....|+.+.|..++....+-.++-.+.+-..-...
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            4556677777777888888888888887655   2334555555555558888888888877765544444443333344


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHhhHHHHH-----HHHh
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAH---EMIKSM-PLRPNMIVWGALL-----AASK  556 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~  556 (638)
                      +-..|+++.|..+++.+.+.  . |+. ..-..-+....+.|+.+.+.   +++... +.+.+......+.     -.+.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            56778999999999999874  3 553 22223345567888888888   555444 2222222222222     1234


Q ss_pred             hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      ..++.+.|..++.++.+..|++-..|..+.......+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            5788999999999999999999989988888876665

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.27  Score=44.92  Aligned_cols=116  Identities=10%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHH---HHHHHhhcCChHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA---LLAASKLHKNPSM  563 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~  563 (638)
                      ....|++.+|...|+....  -.+-+...--.++.+|...|+.+.|..++..++..-....+..   -+....+..+..+
T Consensus       144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4456666666666666654  2222334455566666666777777777666643332222222   1222223332222


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      . ..+++-...+|+|...-..++..|...|+.++|.+.+=.+
T Consensus       222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~  262 (304)
T COG3118         222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL  262 (304)
T ss_pred             H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1 2233344556766666777777777777777776654444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.24  E-value=0.91  Score=41.40  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 006627          523 LGRAGLLDEAHEMIKSM-PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA  599 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  599 (638)
                      +...++.++|...+.+. ...|+  ...+..+...+...++++.|...+..+.+..|.....+..++..+...|+++++.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL  256 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence            33444555555554444 22222  3344444444444555555555555555555543344444444444444455555


Q ss_pred             HHHHHHh
Q 006627          600 GVRRVMK  606 (638)
Q Consensus       600 ~~~~~~~  606 (638)
                      ..+++..
T Consensus       257 ~~~~~~~  263 (291)
T COG0457         257 EALEKAL  263 (291)
T ss_pred             HHHHHHH
Confidence            5554443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.18  E-value=1.3  Score=42.78  Aligned_cols=166  Identities=10%  Similarity=0.023  Sum_probs=105.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhc---cCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSG---VKPNGITFIGLLNACSH---AGLVTEGKSVFDKMVHGLGLVPKIEHY  516 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~  516 (638)
                      .+...++-+|....+++..+++.+.+....   +.-....-....-++-+   .|+.++|.+++..+... ...++++++
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~  220 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL  220 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence            344456667999999999999999998641   11122222334445556   89999999999996654 677888888


Q ss_pred             HHHHHHHH----h-----cCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCC-hH---HHHHHH----HHHhc---cC
Q 006627          517 GCMVDLLG----R-----AGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKN-PS---MGEIAA----TQILE---IE  575 (638)
Q Consensus       517 ~~l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~----~~~~~---~~  575 (638)
                      ..+++.|-    .     ....++|.+.+.+. ...|+..+=..+.......|. ++   +..++-    ..+.+   ++
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            88887763    2     23577888888887 555654322222222333332 21   222222    11111   22


Q ss_pred             CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          576 PQ-NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       576 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +. +--.+..++.+..-.|++++|.++.++|.+..
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            22 23344578888999999999999999997654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.08  E-value=0.44  Score=46.92  Aligned_cols=104  Identities=12%  Similarity=0.121  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--hhHHHHH
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPL--RPNM--IVWGALL  552 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~  552 (638)
                      ..+-..+..++.+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+...  -|..  ..|...+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            33445566777789999999999999987433222445677889999999999999999988731  2433  3344333


Q ss_pred             HHHhhcCC---------------hHHHHHHHHHHhccCCCCcc
Q 006627          553 AASKLHKN---------------PSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       553 ~~~~~~~~---------------~~~A~~~~~~~~~~~p~~~~  580 (638)
                      -.+...++               -..|.+++.++.+.+|.-+.
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            22222222               13467889999999987553

The molecular function of this protein is uncertain.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.07  E-value=1.1  Score=40.82  Aligned_cols=197  Identities=18%  Similarity=0.035  Sum_probs=128.9

Q ss_pred             hhHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC--Cc-hhHHHHHH-H
Q 006627          377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQ-GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR--DI-CMWNAMMA-G  451 (638)
Q Consensus       377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~l~~-~  451 (638)
                      ..+......+...+....+...+...... ........+......+...+++..+.+.+......  +. ........ .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            34444445555555566555555555442 22344445555555666666666777766655532  11 22222333 6


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhc
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKP----NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRA  526 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  526 (638)
                      +...|+++.|...+.+....  .|    ....+......+...++++.+...+.....  ..+. ....+..+...+...
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         140 LYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence            77888888888888888552  33    234444444556778899999999999886  3333 467778888888889


Q ss_pred             CChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          527 GLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       527 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      +++++|...+... ...|+ ...+......+...++.+.+...+++..+..|.
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999998887 44554 455555555555777899999999999999987

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.00  E-value=0.015  Score=34.07  Aligned_cols=32  Identities=25%  Similarity=0.175  Sum_probs=18.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      .|..+...+...|++++|+..++++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            34455556666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.8  Score=41.99  Aligned_cols=153  Identities=12%  Similarity=0.054  Sum_probs=100.3

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChH
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLD  530 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  530 (638)
                      .....|++.+|...|....+.. +-+......++.+|...|+.+.|..++..+-.. --.........-+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence            4456778888888888877753 334466677788888888888888888876432 11111122223345566666666


Q ss_pred             HHHHHHHhCCCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC--CCcchHHHHHHHHHhcCCHH-HHHHHHHHH
Q 006627          531 EAHEMIKSMPLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP--QNYGYNVLMSNIYAVANRWN-DVAGVRRVM  605 (638)
Q Consensus       531 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~  605 (638)
                      +...+-++....| |...-..+...+...|+.+.|...+-.++..+-  ++..+.-.+..++...|.-+ .+..+.++|
T Consensus       221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5555555554456 667777788888888999988888887777544  46677778888888777333 344444443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.91  E-value=3  Score=44.42  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA  391 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  391 (638)
                      ...+..+.+.+++.....++..- ..+...-.....+....|+.++|......+=..| ...+..+..++..+.+.|.
T Consensus       103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~  178 (644)
T PRK11619        103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK  178 (644)
T ss_pred             HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence            34444555677777777644332 2344445566667777777777766666654444 2334455556655554443

>PRK15331 chaperone protein SicA; Provisional

Probab=95.89  E-value=0.16  Score=42.20  Aligned_cols=85  Identities=12%  Similarity=-0.046  Sum_probs=46.5

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE  531 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  531 (638)
                      +...|++++|..+|+-+.-.+ +-|..-+..|..+|-..+++++|...|.....- . .-|+..+-....++...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence            345566666666666555433 223334445555555666666666666665431 1 2333334445666666666666


Q ss_pred             HHHHHHhC
Q 006627          532 AHEMIKSM  539 (638)
Q Consensus       532 A~~~~~~~  539 (638)
                      |+..|...
T Consensus       124 A~~~f~~a  131 (165)
T PRK15331        124 ARQCFELV  131 (165)
T ss_pred             HHHHHHHH
Confidence            66666655

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.89  E-value=0.013  Score=34.32  Aligned_cols=32  Identities=16%  Similarity=-0.005  Sum_probs=20.8

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .+|..+...+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34556666666777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.88  E-value=0.14  Score=46.27  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             ccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhcCChH
Q 006627          489 HAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRP-NMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       489 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~  562 (638)
                      +.|++..|...|...++.+.-.+ ....+.-|+.++...|++++|..+|..+    +..| -+..+..+.......|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            44556666666666665321110 1223334566666666666666666554    2223 2456666666666777777


Q ss_pred             HHHHHHHHHhccCCCCcch
Q 006627          563 MGEIAATQILEIEPQNYGY  581 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~  581 (638)
                      +|...++++++..|+.+.+
T Consensus       233 ~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         233 EACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHH
Confidence            7777777777777765443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=1.2  Score=39.43  Aligned_cols=82  Identities=10%  Similarity=0.005  Sum_probs=39.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-------CCCCH-hhHHHHHHHHhhcCChHHHHHHHHHHhc----cCCCCcchHHHHH
Q 006627          519 MVDLLGRAGLLDEAHEMIKSMP-------LRPNM-IVWGALLAASKLHKNPSMGEIAATQILE----IEPQNYGYNVLMS  586 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~  586 (638)
                      ..+.|.+..++++|-..+.+-.       ..|+. ..+...+-.+....|+..|...++...+    ..|++......|.
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            3345555555555555444331       11221 2233333344445566666666666444    3344444555555


Q ss_pred             HHHHhcCCHHHHHHH
Q 006627          587 NIYAVANRWNDVAGV  601 (638)
Q Consensus       587 ~~~~~~g~~~~A~~~  601 (638)
                      ..| ..||.+++.++
T Consensus       236 ~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKV  249 (308)
T ss_pred             HHh-ccCCHHHHHHH
Confidence            443 45566655554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.82  E-value=0.053  Score=52.86  Aligned_cols=62  Identities=13%  Similarity=0.023  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----hhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM----IVWGALLAASKLHKNPSMGEIAATQILEI  574 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  574 (638)
                      ...++.+..+|...|++++|+..|++. ...|+.    .+|..+..+|...|+.++|+..+++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344555555555566666666665554 444542    23555666666666666666666666665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=3.1  Score=43.87  Aligned_cols=178  Identities=10%  Similarity=0.035  Sum_probs=88.6

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH----HHcccCchHHHHHHHHHHHhCCCCChhHHHHH
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKA----CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNAL  112 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  112 (638)
                      ..-..-+..+.+.+.++.|+.+-..-     ..|..+...+.+.    +.+.|++++|...+-+-... ++|+     .+
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V  403 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV  403 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence            34444555566666666666554322     2233333344333    33556777666655544322 1222     22


Q ss_pred             HHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchH
Q 006627          113 IQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVD  189 (638)
Q Consensus       113 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~  189 (638)
                      |.-|....++..-...++.+.+   .+...-..|+.+|.+.++.++-.+..+.-. .|.-  ..-....+..+...+-.+
T Consensus       404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD  480 (933)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence            3334444444444444444443   344455667777777777777666655433 2211  111334444454555555


Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCC
Q 006627          190 LGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQN  238 (638)
Q Consensus       190 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  238 (638)
                      +|..+-.....       ...+   +.-.+-..+++++|.+.++.++-+
T Consensus       481 ~a~~LA~k~~~-------he~v---l~ille~~~ny~eAl~yi~slp~~  519 (933)
T KOG2114|consen  481 EAELLATKFKK-------HEWV---LDILLEDLHNYEEALRYISSLPIS  519 (933)
T ss_pred             HHHHHHHHhcc-------CHHH---HHHHHHHhcCHHHHHHHHhcCCHH
Confidence            55444333221       1222   223334568899999999988753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.80  E-value=0.43  Score=48.65  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CC-----CCHhhHHHHHHHHhhcCChH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSMP-LR-----PNMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~~~~~  562 (638)
                      ..+.+.|.+++..+.++   -|+...|. .-.+.+...|+.++|++.|+++- .+     .....+..+.+.+....+++
T Consensus       246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            44677788888888764   25554443 33456667788888888888652 11     12345566677788889999


Q ss_pred             HHHHHHHHHhccCCCCcchH-HHHHHHHHhcCCH-------HHHHHHHHHHhh
Q 006627          563 MGEIAATQILEIEPQNYGYN-VLMSNIYAVANRW-------NDVAGVRRVMKE  607 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~  607 (638)
                      +|...+.++.+.+.-+...| ...+-++...|+.       ++|.+++++...
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            99999999998777655544 4556678888888       888888887743

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.73  E-value=0.14  Score=41.09  Aligned_cols=50  Identities=10%  Similarity=0.167  Sum_probs=36.2

Q ss_pred             CCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          472 GVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       472 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      ...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            45677777777777777777777777777777777776666666666664

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.71  E-value=0.33  Score=39.41  Aligned_cols=114  Identities=13%  Similarity=0.047  Sum_probs=60.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      .....+.|++++|.+.|+.+...- +.   ....-..++.+|.+.+++++|...+++.++-+...|++ .|-..+.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence            334456677777777777766642 22   22445566666777777777777777776644444433 22223333322


Q ss_pred             cCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          526 AGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       526 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      -...+   ..+..+ ...             .-.+....|...|+++++..|++..
T Consensus        95 ~~~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   95 YEQDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence            11111   111111 001             1112356888999999999998753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.69  E-value=0.25  Score=46.99  Aligned_cols=126  Identities=12%  Similarity=0.018  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHcCC-------C--CCchhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CcH
Q 006627          412 ILKTALVDMYAKCGDVNGAYRLFSEAI-------Y--RDICMWNAMMAGYGMHGCGEEALIFFVDMER----SGVK-PNG  477 (638)
Q Consensus       412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~-p~~  477 (638)
                      ..|..|...|.-.|+++.|+..-+.-.       .  ..-..+..+..++.-.|+++.|.+.|+.-..    .|-+ ...
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            344455555555666776665543211       0  0113444555555666666666666554332    1211 122


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhh---c-CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHG---L-GLVPKIEHYGCMVDLLGRAGLLDEAHEMIK  537 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  537 (638)
                      .+..+|...|.-..++++|+.++.+-..-   . ...-....+.+|..+|...|..++|+.+..
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33444555555555555565555442210   0 011122344455555555555555555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.64  E-value=1.6  Score=39.31  Aligned_cols=63  Identities=8%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP  614 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  614 (638)
                      +...|.+.|.+..|..-++.+++--|+.+   ..+..+..+|.+.|-.++|.+.-+-+. .+.+.++
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~  238 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ  238 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc
Confidence            44667889999999999999999877644   456677888999999999998877554 4443443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.60  E-value=0.87  Score=36.02  Aligned_cols=138  Identities=13%  Similarity=0.108  Sum_probs=77.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccH---HHHHHHHHHhcCCH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVIL---KTALVDMYAKCGDV  427 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~  427 (638)
                      +.-.|..++..+++.+...+   .+..-++.++--....-+-+...+.++.+-+   -.|...   ...++.+|.+.|..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~   85 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL   85 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence            34467777888888776653   2344455555443333343444444443322   222222   23455666665543


Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627          428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL  507 (638)
Q Consensus       428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  507 (638)
                      .+              .....+..+...|+-++..+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++-++ 
T Consensus        86 se--------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-  149 (161)
T PF09205_consen   86 SE--------------YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-  149 (161)
T ss_dssp             -H--------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred             HH--------------HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence            32              33445677788888888888888887654 788888888999999999999999999888775 


Q ss_pred             CCC
Q 006627          508 GLV  510 (638)
Q Consensus       508 ~~~  510 (638)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            553

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.54  E-value=0.94  Score=37.45  Aligned_cols=125  Identities=12%  Similarity=0.013  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      ..++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..++++.       .++.......+..+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence            345555555566666667777666655 345556666666666542 3333344332       0122223345555666


Q ss_pred             cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhc-CChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          526 AGLLDEAHEMIKSMPLRPNMIVWGALLAASKLH-KNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       526 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      .+.++++.-++.+++.      +...+..+... ++++.|.+.+++     +.++..|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            6666666666666542      11122223333 666666666664     224445655555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.18  Score=46.60  Aligned_cols=158  Identities=11%  Similarity=0.004  Sum_probs=116.9

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----HHHHHHHhcCC
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG----CMVDLLGRAGL  528 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~  528 (638)
                      .-.|+..+|-..++++.+. .|.|...+..-=.+|...|+...-...++++..  .-.|+...|.    .+..++..+|-
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            3578889999999999986 366777888888899999999999999999886  3355554443    33456678999


Q ss_pred             hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          529 LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       529 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      +++|.+.-++. .+.| |..............|+..++.++.++-...=-.    -...|-+.+-.+...+.|+.|+++|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999988 5544 5566666677777889999999988776542111    1345667777888899999999999


Q ss_pred             HHHhhcCCcCC
Q 006627          603 RVMKEIRVKKE  613 (638)
Q Consensus       603 ~~~~~~~~~~~  613 (638)
                      ++=.-....++
T Consensus       271 D~ei~k~l~k~  281 (491)
T KOG2610|consen  271 DREIWKRLEKD  281 (491)
T ss_pred             HHHHHHHhhcc
Confidence            86543333333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.46  E-value=2.9  Score=41.13  Aligned_cols=149  Identities=8%  Similarity=-0.108  Sum_probs=82.9

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hhH
Q 006627          441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IEH  515 (638)
Q Consensus       441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~  515 (638)
                      ...+|..++..+.+.|+++.|...+.++...+..+   .+.....-+......|+..+|...++..... .+..+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44577778888888888888888888877643211   2334444555666778888888888777762 11111  111


Q ss_pred             HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHhhHHHHHHHHhhc------CChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          516 YGCMVDLLGRAGLLDEAHEM-IKSMPLRPNMIVWGALLAASKLH------KNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      ...+...+..  ..+..... ........-...+..+.......      ++.+++...|+++.++.|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111000  00000000 00000000112333333333334      788999999999999999988888888887


Q ss_pred             HHhc
Q 006627          589 YAVA  592 (638)
Q Consensus       589 ~~~~  592 (638)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.45  E-value=2.8  Score=40.83  Aligned_cols=134  Identities=10%  Similarity=0.093  Sum_probs=92.3

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      ...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|++..|.++|+.-...  ++.+..--+..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3455666666666666778888888888777 5566677777777655 46777888888776652  333333334556


Q ss_pred             HHHHhcCChHHHHHHHHhC--CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          521 DLLGRAGLLDEAHEMIKSM--PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      ..+.+-++-+.|..+|+..  .+..+  ...|...+..-..-|+...+..+-+++.++-|..
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            6677888888888888855  22222  4567777777777888888888888888888874

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.30  E-value=3.9  Score=41.57  Aligned_cols=401  Identities=11%  Similarity=0.046  Sum_probs=201.3

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc-ccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN-FTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM  115 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  115 (638)
                      ..|..||.---+....+.+..+++.++..  -|-. .-|......=.+.|..+.+..+|+.... +++.+...|...+.-
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF  122 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence            67777776666666667777788888754  2333 2344444445567888888888888765 467788888777665


Q ss_pred             hh-cCCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhc---cc
Q 006627          116 YS-ECGSLVSARYLFDEMPN------RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFA---DV  185 (638)
Q Consensus       116 ~~-~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~  185 (638)
                      +. ..|+.+.....|+....      .....|...|..-..++++.....++++..+.   |. ..|+.....|.   ..
T Consensus       123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~  198 (577)
T KOG1258|consen  123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQ  198 (577)
T ss_pred             HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhc
Confidence            54 44667777777766543      34567888888888888999999999988763   22 22222222221   11


Q ss_pred             ------CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhccCCCCcc---cHHHHHH-------
Q 006627          186 ------ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG-NLAYAKQLFNRLNQNSVV---SWTVMIS-------  248 (638)
Q Consensus       186 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~---~~~~li~-------  248 (638)
                            ...+++.++-.......               .....+ ..+......+.+..|...   ..+.+-.       
T Consensus       199 ~~~~~l~~~d~~~~l~~~~~~~~---------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~  263 (577)
T KOG1258|consen  199 NEEKILLSIDELIQLRSDVAERS---------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK  263 (577)
T ss_pred             CChhhhcCHHHHHHHhhhHHhhh---------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence                  11122111111111100               000000 111111111222111110   0000000       


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHH
Q 006627          249 GYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRS  328 (638)
Q Consensus       249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (638)
                      .+............+++-..+   |-           .              +.+--.+++..+|...+.--.+.|+.+.
T Consensus       264 ~~~~s~~~~~kr~~fE~~Ikr---pY-----------f--------------hvkpl~~aql~nw~~yLdf~i~~g~~~~  315 (577)
T KOG1258|consen  264 VYQKSEEEEEKRWGFEEGIKR---PY-----------F--------------HVKPLDQAQLKNWRYYLDFEITLGDFSR  315 (577)
T ss_pred             HHHhhHhHHHHHHhhhhhccc---cc-----------c--------------ccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence            000011111111111111110   00           0              0000012234566666777777888888


Q ss_pred             HHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHH-HHhccCchHHHHHHHHHHHH
Q 006627          329 ARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLS-LCTEAGALEMGKWLHTYIEK  404 (638)
Q Consensus       329 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~  404 (638)
                      +.-+|++..-|   =...|-..+.-....|+.+-|..++....+--+ |+......+-. -+-..|+.+.|..+++.+..
T Consensus       316 ~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~  394 (577)
T KOG1258|consen  316 VFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIES  394 (577)
T ss_pred             HHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence            88888777654   122333334434444777777777765544322 22222222222 23456789999999988877


Q ss_pred             hCCCCcccHHHHHHHHHHhcCCHHHHH---HHHHcCC--CCCchhHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCC
Q 006627          405 QGLEVDVILKTALVDMYAKCGDVNGAY---RLFSEAI--YRDICMWNAMMAG-----YGMHGCGEEALIFFVDMERSGVK  474 (638)
Q Consensus       405 ~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~m~~~~~~  474 (638)
                      .- +--...-..-+....+.|+.+.+.   .++....  +.+....+.+.--     +.-.++.+.|..++.++.+. ++
T Consensus       395 e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~  472 (577)
T KOG1258|consen  395 EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LP  472 (577)
T ss_pred             hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CC
Confidence            54 222333333345566777777776   4443322  1122222222222     22245677777777777765 35


Q ss_pred             CcHHHHHHHHHHHhcc
Q 006627          475 PNGITFIGLLNACSHA  490 (638)
Q Consensus       475 p~~~~~~~l~~~~~~~  490 (638)
                      ++...|..++..+...
T Consensus       473 ~~k~~~~~~~~~~~~~  488 (577)
T KOG1258|consen  473 DCKVLYLELIRFELIQ  488 (577)
T ss_pred             ccHHHHHHHHHHHHhC
Confidence            5556666666655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.27  E-value=0.23  Score=46.45  Aligned_cols=48  Identities=13%  Similarity=0.075  Sum_probs=25.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHcC--cCCChhhHHHHHHHHhccCchHHHHHH
Q 006627          351 YAQAHCIDKAFELFIHMKVSK--VRPNEVTMVGLLSLCTEAGALEMGKWL  398 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~  398 (638)
                      +....+.++|+..+.+-...-  ..-...++..+..+.+..|.++++...
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            345666777777776654321  111223455555666666665555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.69  Score=42.90  Aligned_cols=179  Identities=7%  Similarity=-0.043  Sum_probs=118.6

Q ss_pred             HHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH----HHHHHHHhccCcH
Q 006627          421 YAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF----IGLLNACSHAGLV  493 (638)
Q Consensus       421 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~  493 (638)
                      ....|+..+|-..++++.+.   |...+.--=.++...|+.+.-...+++.... ..|+...|    ..+.-++...|-+
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            34457888888888887733   6677777778899999999999999988754 24444333    3334455688999


Q ss_pred             HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-------CCHhhHHHHHHHHhhcCChHHHHH
Q 006627          494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR-------PNMIVWGALLAASKLHKNPSMGEI  566 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------p~~~~~~~l~~~~~~~~~~~~A~~  566 (638)
                      ++|++.-++..+  -.+.|.-.-..+...+...|++.++.+++.+-...       .....|.. .-.+...+.++.|+.
T Consensus       192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHH
Confidence            999999888875  23345556667778888999999999999876311       11122222 223445689999999


Q ss_pred             HHHHHh--ccCCCCcchHH---HHHHHHHhcCCHHHHHHHHH
Q 006627          567 AATQIL--EIEPQNYGYNV---LMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       567 ~~~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~  603 (638)
                      +|.+=+  +++.+|+....   .+-.+......|.+-.++-+
T Consensus       269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~  310 (491)
T KOG2610|consen  269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD  310 (491)
T ss_pred             HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence            998765  46677764433   33444555555554443333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.07  E-value=0.084  Score=44.80  Aligned_cols=124  Identities=15%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             HHHHhccCcHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHh
Q 006627          484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKI-----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASK  556 (638)
Q Consensus       484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~  556 (638)
                      ..-+...|++++|..-|..++.  -.++..     ..|..-..++.+.++++.|++-..+. .+.|. ...+..-..+|.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            4457889999999999999887  444432     33444456788889999998888776 56663 344444456777


Q ss_pred             hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH--HHHHHhhcC
Q 006627          557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG--VRRVMKEIR  609 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~  609 (638)
                      +...+++|+.-|+++++.+|....+....+.+--......+..+  ++.++++-|
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG  234 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG  234 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            88889999999999999999876666655555433333333332  455555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.86  E-value=0.18  Score=41.71  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             HHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHhhHH-HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          515 HYGCMVDLL---GRAGLLDEAHEMIKSM-PLRPNMIVWG-ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       515 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      +...|+..+   .+.++.+++..++..+ -..|...... .-.+.+...|++.+|+.+++.+.+-.|..+..--+++.++
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            444444433   5667888888888877 3555543332 2345567788888888888888888888887888888888


Q ss_pred             HhcCCHH
Q 006627          590 AVANRWN  596 (638)
Q Consensus       590 ~~~g~~~  596 (638)
                      ...|+.+
T Consensus        89 ~~~~D~~   95 (160)
T PF09613_consen   89 YALGDPS   95 (160)
T ss_pred             HHcCChH
Confidence            8888765

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.84  E-value=3.6  Score=38.80  Aligned_cols=152  Identities=10%  Similarity=-0.055  Sum_probs=89.0

Q ss_pred             hhcCChhHHHHhhhhh-----------------hcHHHHHHHHHhCCCchhHHHHHHHHHHC--------CCCCCc----
Q 006627           21 IKTHFKFSYTNIINPL-----------------TRYNSLVTSYIKNNKPSSALNIYAFMRKN--------GSEVDN----   71 (638)
Q Consensus        21 ~~~g~~~~A~~~~~~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~----   71 (638)
                      -+.|+++.|..++.++                 .-||.-...+.+..+++.|...+++..+.        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3677888888777776                 33444444444443888887777766432        122332    


Q ss_pred             -ccHHHHHHHHHcccCchH---HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC-C--CcchHHHHH
Q 006627           72 -FTIPTILKACAQVLMTHL---GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN-R--DVVSWSTMI  144 (638)
Q Consensus        72 -~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li  144 (638)
                       .++..++.++...+..+.   |..+++.+.... +..+.++-.-+.++.+.++.+.+.+++..|.. .  ....+...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             245555566666665444   555666664443 33456666667777778888888888887764 2  234455555


Q ss_pred             HHHH--hCCCchHHHHHHHHhHHCCCcCCHh
Q 006627          145 RGYH--RGGLPEEALEVMREMRFMDIRPSEV  173 (638)
Q Consensus       145 ~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~  173 (638)
                      ..+-  .......+...+..+....+.|...
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence            5442  2234556677777666555555543

It is also involved in sporulation [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.82  E-value=2.3  Score=43.42  Aligned_cols=160  Identities=16%  Similarity=0.074  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCh-----hhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCccc
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNE-----VTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVI  412 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  412 (638)
                      ....++....-.|+-+.+++.+.+..+.+ +.-..     -.|..++..++.    ..+.+.+.++++.+.++  -|+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            44455566666778888888877754432 21111     123333333332    45778889999988875  45555


Q ss_pred             HHHHH-HHHHHhcCCHHHHHHHHHcCCCC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627          413 LKTAL-VDMYAKCGDVNGAYRLFSEAIYR-------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL  484 (638)
Q Consensus       413 ~~~~l-~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~  484 (638)
                      .|... ...+...|++++|.+.|++....       ....+--+.-++....++++|.+.+.++.+.. .-+..+|..+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~  346 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            54433 45677789999999999865521       22345556667778889999999999998864 34445555555


Q ss_pred             HHH-hccCcH-------HHHHHHHHHHhh
Q 006627          485 NAC-SHAGLV-------TEGKSVFDKMVH  505 (638)
Q Consensus       485 ~~~-~~~~~~-------~~a~~~~~~~~~  505 (638)
                      .+| ...|+.       ++|.+++.++..
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            544 356666       777777777643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.80  E-value=0.45  Score=38.19  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHhhHHHHHHHH
Q 006627          508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPNMIVWGALLAAS  555 (638)
Q Consensus       508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~  555 (638)
                      ...|+..+..+++.+|+..|++..|+++++..    +++-+..+|..|+.-+
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            45566777777777777777777777776655    4444466666666433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.65  E-value=0.2  Score=40.60  Aligned_cols=72  Identities=14%  Similarity=-0.015  Sum_probs=39.2

Q ss_pred             hcCChHHHHHHHHhC-CCCCCHhhH-HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 006627          525 RAGLLDEAHEMIKSM-PLRPNMIVW-GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWN  596 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  596 (638)
                      +.++++++..+++.+ -+.|+.... ..-.+.+...|++.+|.++++.+.+-.|..+..--+++.++...||.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            456666666666665 233332211 112334555666666666666666666555555566666666666544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.55  E-value=1  Score=42.27  Aligned_cols=42  Identities=7%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             HhcCChHHHHHHHhcCCCC------CchhHHHHHHHHHhcCCHHHHHH
Q 006627          321 GKCREIRSARTLFDGMKSK------DVMIWNAVISAYAQAHCIDKAFE  362 (638)
Q Consensus       321 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~  362 (638)
                      ....+.+.|+..+.+...+      -..++..+..+.++.|.+++++.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~   64 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK   64 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence            3456677777776654432      12345556666777777766653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.46  E-value=0.4  Score=37.68  Aligned_cols=54  Identities=15%  Similarity=0.045  Sum_probs=29.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      ++...|+.+.|++.|.+.+.. .+-+...|+.-.+++.-+|+.++|+.-+++..+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            344555666666666555543 133445555555555555556555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.40  E-value=0.088  Score=33.03  Aligned_cols=33  Identities=6%  Similarity=0.015  Sum_probs=28.9

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      |..+..++.+|...|++++|+++++++.+..+.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            457889999999999999999999999876553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.39  E-value=0.079  Score=30.85  Aligned_cols=31  Identities=6%  Similarity=0.014  Sum_probs=26.1

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          580 GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .++..+|.+|...|++++|++.+++..+..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            5788999999999999999999998866443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.39  E-value=0.089  Score=31.23  Aligned_cols=26  Identities=8%  Similarity=0.001  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          581 YNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ++..|+.+|.+.|+|++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36789999999999999999999854

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.32  E-value=0.66  Score=39.62  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHH
Q 006627          450 AGYGMHGCGEEALIFFVDMERSGVKPNGI-----TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLL  523 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~  523 (638)
                      .-+...|++++|..-|.+.++. ++|...     .|..-..++.+.+.++.|++-+.+.++   +.|+. .....-..+|
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY  178 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence            3467788888888888888875 344332     233444566788888888888877764   33422 2222334567


Q ss_pred             HhcCChHHHHHHHHhC-CCCCC
Q 006627          524 GRAGLLDEAHEMIKSM-PLRPN  544 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p~  544 (638)
                      .+..++++|++-++++ ...|.
T Consensus       179 ek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHhCcc
Confidence            7778888888888776 44454

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.02  E-value=0.084  Score=30.77  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=16.8

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      +|..+...+...|++++|...++++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344455555555566666666666555555

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.89  E-value=4.8  Score=36.40  Aligned_cols=61  Identities=11%  Similarity=-0.008  Sum_probs=44.2

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          519 MVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      +.+.|.+.|.+..|..-++++ ..-|+    ...+-.+..+|...|-.++|....+-+-...|+++
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            456788999999999988888 22222    34556677889999999998887766655666654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.88  E-value=4.1  Score=35.58  Aligned_cols=62  Identities=13%  Similarity=0.047  Sum_probs=39.2

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCch-hHHHHHH--HHHhcCChHHHHHHHHHHHHc
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDIC-MWNAMMA--GYGMHGCGEEALIFFVDMERS  471 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~  471 (638)
                      -+.+||-|.--+...|+++.|.+.|+....-|+. -|..+=+  ++.-.|+++.|.+-+.+.-+.
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence            3567777777777888888888888777655432 2222211  233457777777777666665

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.76  E-value=3.3  Score=34.14  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=22.5

Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627          381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC  424 (638)
Q Consensus       381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (638)
                      .++..+...+.......+++.+...+ +.+....+.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            34444444455555555555555554 34555555666555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.74  E-value=1.9  Score=43.37  Aligned_cols=161  Identities=13%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627          349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN  428 (638)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  428 (638)
                      +...-.++++.+.+....-.-..--| ......++.-+.+.|..+.|.++...         +   ..-.+...+.|+++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence            34455777887766664211000012 33456677777778888887776432         2   22345667788888


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627          429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG  508 (638)
Q Consensus       429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  508 (638)
                      .|.++.++..  +...|..|.......|+++-|.+.+++...         +..|+-.|.-.|+.+.-.++.+....+ |
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~  403 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G  403 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence            8888776554  566888888888888888888888877442         455666677777777777776666542 1


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627          509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP  540 (638)
Q Consensus       509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  540 (638)
                            -++....++.-.|+.++..+++.+.+
T Consensus       404 ------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  404 ------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                  24444555666788888888877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.71  E-value=1.5  Score=44.20  Aligned_cols=157  Identities=13%  Similarity=0.034  Sum_probs=88.2

Q ss_pred             HHHHhcCCHHHHHHHHH--cCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627          419 DMYAKCGDVNGAYRLFS--EAI-YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       419 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  495 (638)
                      +...-.++++++.+..+  ++. .-+....+.++.-+.+.|.++.|+++.+.-.         +   -.....+.|+.+.
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHHH
Confidence            44455677777655554  111 1123446667777777777777776643321         1   1233456777777


Q ss_pred             HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      |.++.++.       ++...|..|.+...+.|+++-|.+.+++.+      -+..|.-.|...|+.+.-.++.+.+.+..
T Consensus       337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            77654332       356688888888888888888888888764      24445556677777766666665555422


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                           -+...-.++.-.|+.++..+++..-
T Consensus       404 -----~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 -----DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 2444445566678888888777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.51  E-value=0.14  Score=29.85  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=26.1

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          580 GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..|..+|.+|...|++++|+..|++..+..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4688999999999999999999998876543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.43  E-value=15  Score=40.76  Aligned_cols=141  Identities=15%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627          416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  495 (638)
                      -.++.-.+.|.+.+|..++..-...-...|.+...-+.....+++|.-.|+..-+         ....+.+|..+|+|++
T Consensus       913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~  983 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE  983 (1265)
T ss_pred             HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence            3344444556666666655433333334555555556666777777776665332         2234567778888888


Q ss_pred             HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      |..+..++..  +-.--..+-..|+.-+...+++-+|-++..+....|..     .+..+.....+++|..+....-
T Consensus       984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen  984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence            8888776643  11111223356777788888888888888877434322     1223344445666666655554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.24  E-value=0.36  Score=43.49  Aligned_cols=97  Identities=11%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             hcHHHHHHHHHh-----CCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc----------------CchHHHHHHH
Q 006627           37 TRYNSLVTSYIK-----NNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL----------------MTHLGKEIHG   95 (638)
Q Consensus        37 ~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~~~   95 (638)
                      .+|-..+..+..     .+.++=.-..+..|.+.|+.-|..+|..||..+-+..                +.+-+..+++
T Consensus        68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe  147 (406)
T KOG3941|consen   68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE  147 (406)
T ss_pred             HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence            566666666653     4566667778888999999999999999998765432                2334778899


Q ss_pred             HHHHhCCCCChhHHHHHHHhhhcCCCh-hHHHHHhccCC
Q 006627           96 FAIKNGLDGDAYVSNALIQMYSECGSL-VSARYLFDEMP  133 (638)
Q Consensus        96 ~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~  133 (638)
                      +|..+|+.||..+-..|+.++.+.+-. .+..++.-.|+
T Consensus       148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            999999999999999999988877653 23344443443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.05  E-value=3.3  Score=34.67  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=66.8

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh-HHHHH--HHHHHhcC
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE-HYGCM--VDLLGRAG  527 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g  527 (638)
                      +.+.+..++|+.-|..+.+.|...=+. ..........+.|+-..|...|+++-.. .-.|.+. -...|  ...+...|
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g  146 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG  146 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence            345667778888887777766432221 1222233456677777777777777654 2222221 11111  12345667


Q ss_pred             ChHHHHHHHHhCC--CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          528 LLDEAHEMIKSMP--LRP-NMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       528 ~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .+++....++-+.  -.| ....-..|.-+..+.|++.+|...|+++..
T Consensus       147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            7777666666652  122 233445555566677777777777776665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.00  E-value=0.15  Score=29.33  Aligned_cols=30  Identities=3%  Similarity=-0.042  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          581 YNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ++..++.+|.+.|++++|.+.|+++.+..|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            466788888888888888888888876544

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.89  E-value=0.95  Score=40.95  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             HHHHhcCC--CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC------------
Q 006627          330 RTLFDGMK--SKDVMIWNAVISAYAQ-----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG------------  390 (638)
Q Consensus       330 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------  390 (638)
                      +..|....  ++|-.+|-..+..|..     .+.++-....++.|.+-|+.-|..+|..|++.+-+..            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            44455554  4466666666666643     4567777888889999999999999999998765432            


Q ss_pred             ----chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627          391 ----ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV  427 (638)
Q Consensus       391 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  427 (638)
                          +-+-++.++++|...|+-||..+-..|+.++++.+..
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                3355788999999999999999999999999988764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.81  E-value=1.2  Score=37.09  Aligned_cols=120  Identities=15%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             HHHHHHHHH---HHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CCCCHhhHHHH
Q 006627          477 GITFIGLLN---ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSMP-LRPNMIVWGAL  551 (638)
Q Consensus       477 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l  551 (638)
                      ..+...|+.   .-...++.+++..++..+.   -+.|...... .-...+.+.|++.+|..+|+++. ..|....-..+
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL   83 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence            344445544   4467889999999999986   4556543322 23456789999999999999993 34555555666


Q ss_pred             HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      +..|.....-..=....+++++..|+ +.... +...+....+...|.+.
T Consensus        84 lA~CL~~~~D~~Wr~~A~evle~~~d-~~a~~-Lv~~Ll~~~~~~~a~~~  131 (160)
T PF09613_consen   84 LALCLYALGDPSWRRYADEVLESGAD-PDARA-LVRALLARADLEPAHEA  131 (160)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhcCCC-hHHHH-HHHHHHHhccccchhhh
Confidence            66666555444445566667777664 44444 44444444444445544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.81  E-value=0.49  Score=43.58  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|++.|+.+.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34455666666777777777777777777777777777777777777777777777777654

>PRK09687 putative lyase; Provisional

Probab=92.70  E-value=8.9  Score=36.06  Aligned_cols=25  Identities=8%  Similarity=-0.134  Sum_probs=12.2

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      .+.+....|+. +|...++++.+.+|
T Consensus       241 a~~ALg~ig~~-~a~p~L~~l~~~~~  265 (280)
T PRK09687        241 IIEAAGELGDK-TLLPVLDTLLYKFD  265 (280)
T ss_pred             HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence            34444444443 45555555555454

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.62  E-value=16  Score=38.67  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC
Q 006627          144 IRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG  223 (638)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  223 (638)
                      |..+.+.+.+++|++..+.-..  ..|...                                  ...+....+..+...|
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~----------------------------------i~kv~~~yI~HLl~~~  406 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIG--NEERFV----------------------------------IKKVGKTYIDHLLFEG  406 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccC--Cccccc----------------------------------hHHHHHHHHHHHHhcc
Confidence            5667778888888887765432  222210                                  2234455666666777


Q ss_pred             ChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH
Q 006627          224 NLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN  257 (638)
Q Consensus       224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~  257 (638)
                      ++++|....-.|...+..-|..-+.-+...++..
T Consensus       407 ~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~  440 (846)
T KOG2066|consen  407 KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT  440 (846)
T ss_pred             hHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence            7777777766666666666655555555555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.56  E-value=6.3  Score=33.96  Aligned_cols=89  Identities=12%  Similarity=0.045  Sum_probs=55.2

Q ss_pred             HHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCCC--CHhhHHHHHHHHh
Q 006627          484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----CMVDLLGRAGLLDEAHEMIKSMPLRP--NMIVWGALLAASK  556 (638)
Q Consensus       484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~  556 (638)
                      ...+...+++++|..-++.....    |.-..+.     .|.+.....|.+|+|+..++... .+  .......-...+.
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill  170 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence            34466778888888777766532    2222222     34456667788888888887653 11  1222333446677


Q ss_pred             hcCChHHHHHHHHHHhccCCC
Q 006627          557 LHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      ..|+.++|+..|+++++.++.
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         171 AKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCC
Confidence            788888888888888877654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.50  E-value=8  Score=35.01  Aligned_cols=273  Identities=12%  Similarity=0.092  Sum_probs=150.0

Q ss_pred             CCCchhhHHHHHHHH-HhcCChHHHHHHHhcCCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCc--
Q 006627          306 FEFSLAMANALVDMY-GKCREIRSARTLFDGMKSK-------DVMIWNAVISAYAQAHCIDKAFELFIHMKV---SKV--  372 (638)
Q Consensus       306 ~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~--  372 (638)
                      -.||+..-|..-..- .+..++++|+.-|.++.+-       .....-.+|....+.+++++.+..+.+|..   +.+  
T Consensus        22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr  101 (440)
T KOG1464|consen   22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR  101 (440)
T ss_pred             CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            345544444332221 2344677788777766532       223455678888899999999888888742   112  


Q ss_pred             CCChhhHHHHHHHHhccCchHHHHHHHHHHHHh-----CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-------
Q 006627          373 RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-------  440 (638)
Q Consensus       373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------  440 (638)
                      .-+..+.+.++...+...+.+.-..+++.-.+.     +-..-..+-+.|...|...+.+....+++.++.+.       
T Consensus       102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe  181 (440)
T KOG1464|consen  102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE  181 (440)
T ss_pred             cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence            224556778887777777766666665543321     11112234456777777777777777777654311       


Q ss_pred             -C-------chhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHH-----hccCcHHHHHHHHHHHhhh
Q 006627          441 -D-------ICMWNAMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNAC-----SHAGLVTEGKSVFDKMVHG  506 (638)
Q Consensus       441 -~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~  506 (638)
                       |       ...|..-++.|...++-.....++++.... ..-|-+..... ++-|     .+.|.+++|..-|-++.+.
T Consensus       182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhc
Confidence             1       246677778888888877777888876542 22354444433 4444     4678888876554444432


Q ss_pred             c---CCCCCh--hHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          507 L---GLVPKI--EHYGCMVDLLGRAG----LLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       507 ~---~~~p~~--~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      +   |.+...  .-|-.|...+.+.|    +.++|.-    ....|...+...++.+|.. ++..+-++++..-..--.+
T Consensus       261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~  335 (440)
T KOG1464|consen  261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMD  335 (440)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccc
Confidence            2   222222  22445556666655    1111110    0233555666777777754 4554444444433333333


Q ss_pred             CcchHHH
Q 006627          578 NYGYNVL  584 (638)
Q Consensus       578 ~~~~~~~  584 (638)
                      +|.+..+
T Consensus       336 DpFIReh  342 (440)
T KOG1464|consen  336 DPFIREH  342 (440)
T ss_pred             cHHHHHH
Confidence            4444333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.46  E-value=3.9  Score=35.13  Aligned_cols=90  Identities=13%  Similarity=-0.027  Sum_probs=66.3

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCHhhHH-----HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG-----ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      +...+..+|++++|..-++..-..|....+.     .|.......|.+++|...+....+-.=. +.....-|+++...|
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg  173 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence            3456788999999999998763344433333     3445667889999998887755442211 334677899999999


Q ss_pred             CHHHHHHHHHHHhhcC
Q 006627          594 RWNDVAGVRRVMKEIR  609 (638)
Q Consensus       594 ~~~~A~~~~~~~~~~~  609 (638)
                      +.++|+..|++..+..
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            9999999999998775

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.44  E-value=0.21  Score=42.01  Aligned_cols=110  Identities=10%  Similarity=0.016  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcC-
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR---AGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHK-  559 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~-  559 (638)
                      ++.|.+.++....  ..+.|...++.-..++..   .....++.++++++        .+.|+ ..++..+.+++...+ 
T Consensus         7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            4556666666444  233445544444444332   23333444444433        35565 466666666665432 


Q ss_pred             ---C-------hHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCcC
Q 006627          560 ---N-------PSMGEIAATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       560 ---~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~  612 (638)
                         +       +++|...|+++...+|+|.        +|.+. .-.++|-++..++.+++...
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--------~Y~ksLe~~~kap~lh~e~~~~~~~~  140 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNE--------LYRKSLEMAAKAPELHMEIHKQGLGQ  140 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHTHHHHHHHHHHSSS--
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence               1       4556666666666777752        33332 44455666666665555433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.44  E-value=5.9  Score=39.48  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=25.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          518 CMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      .+..++.+.|+.++|++.++++ +..|   .......|+..+...+.+.++..++.+.-
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            3444444555555555555554 2112   12233444555555555555555555543

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.32  E-value=8  Score=38.01  Aligned_cols=65  Identities=8%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ....+|..+...+.+.|+++.|...+.++...++.    .+.+....+..++..|+..+|...++...+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34678888999999999999999999999986632    467888889999999999999999988876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.27  E-value=10  Score=35.74  Aligned_cols=59  Identities=12%  Similarity=-0.020  Sum_probs=26.3

Q ss_pred             HHHHHHHHhccCchHH---HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627          379 MVGLLSLCTEAGALEM---GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI  438 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  438 (638)
                      +..++.++...+..+.   |..+++.+... .+..+.++..-++.+.+.++.+++.+.+.+|.
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi  148 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI  148 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence            3444555555444333   33333334222 12223333344444544555555555555544

It is also involved in sporulation [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.00  E-value=4.1  Score=34.57  Aligned_cols=97  Identities=13%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHH---HHhccCcHHHHHHHHHHHhhh----cCCCCCh-hHHHHHHHHHHhc----
Q 006627          459 EEALIFFVDMERSGVKPNGITFIGLLN---ACSHAGLVTEGKSVFDKMVHG----LGLVPKI-EHYGCMVDLLGRA----  526 (638)
Q Consensus       459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~----  526 (638)
                      +.|.+.++.-...+ +.|...++.-..   -+++.....++.+++++.+++    ..+.|+. ..+.++..+|...    
T Consensus         8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            45556665544443 444443333333   333333334444444443332    1456765 6777888877544    


Q ss_pred             CChHHHHHHHHhC--------CCCCCHhhHHHHHHHHh
Q 006627          527 GLLDEAHEMIKSM--------PLRPNMIVWGALLAASK  556 (638)
Q Consensus       527 g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~  556 (638)
                      .+..+|.++|+++        ..+|+...|+.-+....
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3444555555444        36788888876666553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.94  E-value=0.24  Score=29.38  Aligned_cols=27  Identities=11%  Similarity=-0.103  Sum_probs=19.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      +|..+...|...|++++|+..+++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356677888888888888888888554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.91  E-value=0.37  Score=44.69  Aligned_cols=109  Identities=14%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHK  559 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~  559 (638)
                      -..-|.++|.+++|+..|.....   +.| ++..+..-..+|.+..++..|..-...+ .+ ..-...|..-+.+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35568999999999999998864   445 7777777788999999998888776655 11 112344555555556678


Q ss_pred             ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627          560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  598 (638)
                      +..+|.+-++.+++++|++-    .|-..|.+.....++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~  214 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRER  214 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence            89999999999999999953    444445554444433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.77  E-value=0.46  Score=44.06  Aligned_cols=96  Identities=17%  Similarity=0.074  Sum_probs=65.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG  527 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  527 (638)
                      ..-|.+.|.+++|+..|.+....  .| |++++..-..+|.+...+..|..-+..++.-  ...-+..|..-+.+-...|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence            35689999999999999997764  56 8899999999999999999998888877641  1111222333333333345


Q ss_pred             ChHHHHHHHHhC-CCCCCHhhH
Q 006627          528 LLDEAHEMIKSM-PLRPNMIVW  548 (638)
Q Consensus       528 ~~~~A~~~~~~~-~~~p~~~~~  548 (638)
                      +..+|.+-++.. .+.|+..-+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHH
Confidence            666666665554 567764443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.71  E-value=3.3  Score=36.89  Aligned_cols=18  Identities=11%  Similarity=-0.045  Sum_probs=7.8

Q ss_pred             HHHHhcCChHHHHHHHHH
Q 006627          450 AGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~  467 (638)
                      .+|...+++++|...+.+
T Consensus        39 vafRnAk~feKakdcLlk   56 (308)
T KOG1585|consen   39 VAFRNAKKFEKAKDCLLK   56 (308)
T ss_pred             HHHHhhccHHHHHHHHHH
Confidence            334444444444444433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.60  E-value=0.41  Score=27.74  Aligned_cols=29  Identities=10%  Similarity=0.100  Sum_probs=25.9

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          580 GYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      .+|..++.+|...|++++|...|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999988654

...

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.60  E-value=0.28  Score=26.46  Aligned_cols=24  Identities=4%  Similarity=0.047  Sum_probs=19.8

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHH
Q 006627          580 GYNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       580 ~~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      .....++.++...|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456788889999999999988875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.52  E-value=7.8  Score=32.80  Aligned_cols=134  Identities=8%  Similarity=0.012  Sum_probs=79.0

Q ss_pred             HHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcC--ChHHHHHHHhcCC
Q 006627          260 VRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCR--EIRSARTLFDGMK  337 (638)
Q Consensus       260 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~  337 (638)
                      .+.++.+.+.+++|+...+..++..+.+.|+...    +..+...++-+|.......+-.+....  -.+-|.+++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            4556666677888888888888888888887554    334445555555444333332222211  1344555555554


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627          338 SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ  405 (638)
Q Consensus       338 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  405 (638)
                      .    .+..++..+...|++-+|+++.+....    .+......++.+..+.++...-..+++....+
T Consensus        90 ~----~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 T----AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             h----hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2    355667778888888888888876422    22223345666666666666555555555543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.39  E-value=12  Score=34.56  Aligned_cols=61  Identities=13%  Similarity=0.004  Sum_probs=53.3

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ++......|...|.+.+|.+..++++.++|-+...+-.|..+|...||--.|.+.++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3344456788999999999999999999999999999999999999998888888887743

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.35  E-value=0.61  Score=40.42  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=71.3

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~  563 (638)
                      |-..|-+..|.--|....   .+.|+ +..||.|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.-.|++..
T Consensus        75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L  151 (297)
T COG4785          75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL  151 (297)
T ss_pred             hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence            556677777777666665   45565 367888888888889999999988877 56664 2232222223445678888


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHh--cCCHHHHHHHH
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAV--ANRWNDVAGVR  602 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~  602 (638)
                      |.+-+.+.-+.+|+||- ..  .|+|..  .=+..+|..-+
T Consensus       152 Aq~d~~~fYQ~D~~DPf-R~--LWLYl~E~k~dP~~A~tnL  189 (297)
T COG4785         152 AQDDLLAFYQDDPNDPF-RS--LWLYLNEQKLDPKQAKTNL  189 (297)
T ss_pred             hHHHHHHHHhcCCCChH-HH--HHHHHHHhhCCHHHHHHHH
Confidence            88888888888888752 22  233333  34556666543

>PRK09687 putative lyase; Provisional

Probab=91.28  E-value=13  Score=34.97  Aligned_cols=75  Identities=9%  Similarity=-0.027  Sum_probs=39.3

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC  487 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  487 (638)
                      .++..+....+.++++.|+......+.+.+..++  .....+.++...|.. +|+..+.++.+.  .||..+-...+.+|
T Consensus       203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            3455555555666666666433333333333333  223455666666663 577777776654  44665555555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.04  E-value=0.34  Score=27.76  Aligned_cols=31  Identities=6%  Similarity=-0.114  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          548 WGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      +..+..++...|+.++|...++++++..|++
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            4456677788899999999999999988874

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.01  E-value=2  Score=39.76  Aligned_cols=78  Identities=9%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHH-----hCCCCChhHHHH
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIK-----NGLDGDAYVSNA  111 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  111 (638)
                      .++..++..+...++++.+.+.++.+.... +-+...|..++.+|.+.|+...|.+.++.+.+     .|+.|.+.+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            666778888888999999999999998875 66788999999999999999999998888765     578888888777


Q ss_pred             HHHh
Q 006627          112 LIQM  115 (638)
Q Consensus       112 li~~  115 (638)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            7666

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.83  E-value=9.2  Score=32.38  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=26.6

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC
Q 006627           92 EIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP  133 (638)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  133 (638)
                      +....+.+.+++|+...+..+++.+.+.|++.....+++.-.
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V   56 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV   56 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence            344445566677777777777777777777666666555433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.78  E-value=11  Score=33.41  Aligned_cols=128  Identities=9%  Similarity=0.017  Sum_probs=59.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCC-CChhHHHHHH---HHH
Q 006627          454 MHGCGEEALIFFVDMERSGVKP-----NGITFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLV-PKIEHYGCMV---DLL  523 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~---~~~  523 (638)
                      +..++++|...++..++--...     -...+..+...|... .+++.|+..|+..-+-+... .+...-.+++   ..-
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            4447777777777655421011     111123344444433 56667777776665422111 1111122222   222


Q ss_pred             HhcCChHHHHHHHHhC---CCCCC-----HhhHHHHHHHHhhc-CChHHHHHHHHHHhccCCCCcch
Q 006627          524 GRAGLLDEAHEMIKSM---PLRPN-----MIVWGALLAASKLH-KNPSMGEIAATQILEIEPQNYGY  581 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~---~~~p~-----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~  581 (638)
                      ...+++.+|+.+|++.   ....+     ..-|..-...|.-. .|.-.+...+++..+++|.-...
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            4456677777776665   11111     11111111222222 56666667777777777764443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.74  E-value=2.8  Score=34.29  Aligned_cols=76  Identities=20%  Similarity=0.173  Sum_probs=49.0

Q ss_pred             HHHHHHHHHH---HhccCcHHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhhHH
Q 006627          477 GITFIGLLNA---CSHAGLVTEGKSVFDKMVHGLGLVPKI---EHYGCMVDLLGRAGLLDEAHEMIKSMPLRP-NMIVWG  549 (638)
Q Consensus       477 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~  549 (638)
                      ....+.|+..   -...++.+++..++..+.   -+.|+.   .++  -...+...|++++|..+|++....+ ....-.
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k   81 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGK   81 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence            3344444443   456889999999999886   445543   334  3456788999999999999994333 433334


Q ss_pred             HHHHHHhh
Q 006627          550 ALLAASKL  557 (638)
Q Consensus       550 ~l~~~~~~  557 (638)
                      .+...|..
T Consensus        82 AL~A~CL~   89 (153)
T TIGR02561        82 ALLALCLN   89 (153)
T ss_pred             HHHHHHHH
Confidence            44444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.47  E-value=49  Score=40.20  Aligned_cols=306  Identities=10%  Similarity=-0.026  Sum_probs=160.7

Q ss_pred             HhcccCChhhHHHHHHHHHHhc--CCCchhhHHHHHHHHHhcCChHHHHHHHhc-CCCCCchhHHHHHHHHHhcCCHHHH
Q 006627          284 ECGFVGGLQLGKWLHAYILRNG--FEFSLAMANALVDMYGKCREIRSARTLFDG-MKSKDVMIWNAVISAYAQAHCIDKA  360 (638)
Q Consensus       284 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a  360 (638)
                      +-.+.+.+..|...++.-....  .......+..+...|..-+++|....+... ..+++   ...-|......|+++.|
T Consensus      1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred             HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence            3334455555555555421000  011223344555577777888777777663 33322   22334455667888888


Q ss_pred             HHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHH-HHHHHHHHhcCCHHHHHHHHHcCCC
Q 006627          361 FELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILK-TALVDMYAKCGDVNGAYRLFSEAIY  439 (638)
Q Consensus       361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~  439 (638)
                      ...|+.+.+.+ ++...+++.++......|.++...-..+-..... ++....+ +.=+.+--+.++++.......   .
T Consensus      1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred             HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence            88888887653 3336677777766666777776666555444332 2222222 222444456667766666554   3


Q ss_pred             CCchhHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH----------hh
Q 006627          440 RDICMWNAM--MAGYGMHG--CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM----------VH  505 (638)
Q Consensus       440 ~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~  505 (638)
                      .+..+|...  .....+..  +.-.-.+..+.+++.-+.|        +.+|+..|.+..+.++.-++          ..
T Consensus      1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred             ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455443  22222222  2111122333333321111        11222222222222211111          11


Q ss_pred             hcCCCCCh------hHHHHHHHHHHhcCChHHHHHH---HHhC----CCCC-----CHhhHHHHHHHHhhcCChHHHHHH
Q 006627          506 GLGLVPKI------EHYGCMVDLLGRAGLLDEAHEM---IKSM----PLRP-----NMIVWGALLAASKLHKNPSMGEIA  567 (638)
Q Consensus       506 ~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~---~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~  567 (638)
                      ..++.++.      ..|..-+   .+.+....+.+-   +++.    ...|     -..+|....+.....|.++.|...
T Consensus      1616 l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred             hhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence            11333322      2222222   222222223222   2222    1222     256888888888999999999999


Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .-++.+..+  +.++...++.++..|+-..|+.+++...+.+.
T Consensus      1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            999988773  57899999999999999999999998875443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.43  E-value=1.4  Score=38.12  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             HhcCChHHHHHHHHhCCCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHH
Q 006627          524 GRAGLLDEAHEMIKSMPLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWND  597 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~  597 (638)
                      .+.|+ ++|.+.|-.+...|  +.......+.+|....|.+++++++-+++++.+.    |+.++..|+.+|.+.|+++.
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            34454 66777666663333  2333344455666678999999999999986543    57889999999999999988


Q ss_pred             H
Q 006627          598 V  598 (638)
Q Consensus       598 A  598 (638)
                      |
T Consensus       197 A  197 (203)
T PF11207_consen  197 A  197 (203)
T ss_pred             h
Confidence            7

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.33  E-value=28  Score=37.18  Aligned_cols=86  Identities=10%  Similarity=0.033  Sum_probs=39.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCcccHHHHHHHHHHh---
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQG-LEVDVILKTALVDMYAK---  423 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  423 (638)
                      ...+.-.|+++.|++.+-+  ..+...+.+.+...+..+.-.+-.+...   ..+.... -.|.+.-+..|+..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3445668899999988876  2334556666666655443222211111   2221111 01222556777877775   


Q ss_pred             cCCHHHHHHHHHcCC
Q 006627          424 CGDVNGAYRLFSEAI  438 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~  438 (638)
                      ..++.+|.++|--+.
T Consensus       340 ~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  340 ITDPREALQYLYLIC  354 (613)
T ss_dssp             TT-HHHHHHHHHGGG
T ss_pred             ccCHHHHHHHHHHHH
Confidence            457778888775544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.20  E-value=4.5  Score=34.93  Aligned_cols=96  Identities=13%  Similarity=-0.004  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC--CCChhHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL--VPKIEHYGCM  519 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l  519 (638)
                      .+..+..-|++.|+.+.|++.+.++.+....|..  ..+..+++.+...+++..+.....++......  +++...--..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3445566666677777777777777665444443  34566666777777777777776666542111  1111111111


Q ss_pred             HH--HHHhcCChHHHHHHHHhC
Q 006627          520 VD--LLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       520 ~~--~~~~~g~~~~A~~~~~~~  539 (638)
                      ..  .+...+++.+|.+.|-+.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHcc
Confidence            11  224467777777777665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.09  E-value=0.88  Score=29.78  Aligned_cols=38  Identities=21%  Similarity=0.089  Sum_probs=28.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      -.+.-++.+.|+++.|.+..+.+++.+|+|..+..+..
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            34556788999999999999999999999877665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.04  E-value=0.87  Score=40.17  Aligned_cols=49  Identities=10%  Similarity=0.092  Sum_probs=23.8

Q ss_pred             hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      +..+++.+..-..+++++.|+.......++.++.....+++|+..+++.
T Consensus        56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3444444444444455555544444445555555555555554444444

>PRK10941 hypothetical protein; Provisional

Probab=90.00  E-value=1.5  Score=40.70  Aligned_cols=62  Identities=18%  Similarity=0.010  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +.+-.++.+.++++.|.++.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...++.+
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            44556777888888888888888888888888888888888888888888888877765544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.94  E-value=14  Score=32.96  Aligned_cols=154  Identities=13%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCcCCChh-hHHHHHHHHhccCchHH
Q 006627          320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKV----SKVRPNEV-TMVGLLSLCTEAGALEM  394 (638)
Q Consensus       320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~~~~~~  394 (638)
                      +.-.+.+++|.++|.+           -...|--..+++.|=..|-+..+    .|-+.|.. +|.-.-. |.+.+++++
T Consensus        24 fgg~~k~eeAadl~~~-----------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~e   91 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYER-----------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEE   91 (288)
T ss_pred             cCCCcchHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHH
Confidence            3344566666666644           23455555666666555555422    22222222 2222222 233335555


Q ss_pred             HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHc--
Q 006627          395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERS--  471 (638)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~--  471 (638)
                      |...++.               -++.|...|++..|-....+           +...|-.. .++++|+..|++.-+-  
T Consensus        92 Av~cL~~---------------aieIyt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen   92 AVNCLEK---------------AIEIYTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HHHHHHH---------------HHHHHHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence            5544433               34567777777776654322           22333222 4566666666665431  


Q ss_pred             CCCCc---HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627          472 GVKPN---GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK  512 (638)
Q Consensus       472 ~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~  512 (638)
                      |-..+   ...+.-+...-...+++.+|+++|++.... .+..+
T Consensus       146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~-s~~n~  188 (288)
T KOG1586|consen  146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS-SLDNN  188 (288)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccch
Confidence            11111   123444444456788999999999998874 44444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.86  E-value=0.28  Score=45.64  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             hcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          525 RAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      ..|.++.|++.+... +..| ....+..-..++...+....|++-+..+++++|+.+.-|-.-+.+..-+|+|++|.+.+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            345566666666555 3333 23333344455566667777777777777777777777777777777777777777777


Q ss_pred             HHHhhcCC
Q 006627          603 RVMKEIRV  610 (638)
Q Consensus       603 ~~~~~~~~  610 (638)
                      ....+.++
T Consensus       206 ~~a~kld~  213 (377)
T KOG1308|consen  206 ALACKLDY  213 (377)
T ss_pred             HHHHhccc
Confidence            76655444

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.91  E-value=15  Score=33.28  Aligned_cols=156  Identities=8%  Similarity=0.046  Sum_probs=98.3

Q ss_pred             chHhhhhHHHhhh-hcCChhHHHHhhhhh------------hcHHHHHHHHHhCCCchhHHHHHHHHHHC---CC--CCC
Q 006627            9 NLEQTRQCHAHII-KTHFKFSYTNIINPL------------TRYNSLVTSYIKNNKPSSALNIYAFMRKN---GS--EVD   70 (638)
Q Consensus         9 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~~~   70 (638)
                      |+.+-|+--++-+ +..++++|+.-|+++            .+...+|....+.+++++..+.|.+|...   .+  .-+
T Consensus        25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS  104 (440)
T KOG1464|consen   25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS  104 (440)
T ss_pred             CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6666666555433 445899999999987            55567888889999999999998888532   11  223


Q ss_pred             cccHHHHHHHHHcccCchHHHHHHHHHHHhC-CCCC----hhHHHHHHHhhhcCCChhHHHHHhccCCC--------C--
Q 006627           71 NFTIPTILKACAQVLMTHLGKEIHGFAIKNG-LDGD----AYVSNALIQMYSECGSLVSARYLFDEMPN--------R--  135 (638)
Q Consensus        71 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~--  135 (638)
                      ....++++.......+.+.....++.-++.- -..+    ..+-+.|-..|...|++....++++++.+        .  
T Consensus       105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~  184 (440)
T KOG1464|consen  105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ  184 (440)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence            4466777776666666665555554433210 0011    12334566667777777777777766542        0  


Q ss_pred             -----CcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627          136 -----DVVSWSTMIRGYHRGGLPEEALEVMREMR  164 (638)
Q Consensus       136 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~  164 (638)
                           =...|..=|..|..+.+-.+...++++..
T Consensus       185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL  218 (440)
T ss_pred             hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence                 12356666777777777777777777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.54  E-value=0.93  Score=27.68  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=23.4

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          580 GYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .++..|+.+|...|++++|+.++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4678899999999999999999998864

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.44  E-value=7  Score=38.48  Aligned_cols=121  Identities=13%  Similarity=-0.022  Sum_probs=62.7

Q ss_pred             HhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627          453 GMHGCGEEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE  531 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  531 (638)
                      ...|+...|-+-+..... ..-.|+...  .........|+++.+...+.....  -+.....+..++++...+.|++++
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence            345565555443333332 212233222  223334566777777766666543  233344556666666666777777


Q ss_pred             HHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          532 AHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       532 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      |...-.-| +. -.++.............|-++++...+++.+.++|.
T Consensus       376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            77666655 21 123333333333334455666777777777766664

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.29  E-value=1.6  Score=32.61  Aligned_cols=62  Identities=11%  Similarity=0.011  Sum_probs=36.7

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCH-HHHHHHHHHH
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYAVANRW-NDVAGVRRVM  605 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~A~~~~~~~  605 (638)
                      |......+...+...|++++|...+-.+++.+|+  +......+..++...|.- .-+.++-++|
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4566666666777777777777777777776654  355666777777777663 3444444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.05  E-value=6.4  Score=33.98  Aligned_cols=94  Identities=18%  Similarity=0.080  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHcCCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH---H
Q 006627          412 ILKTALVDMYAKCGDVNGAYRLFSEAIYRD------ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI---G  482 (638)
Q Consensus       412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~  482 (638)
                      ..+..+.+.|.+.|+.+.|.+.|.++....      ...+-.+++.....+++..+...+.+....--.+......   .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            455667778888888888888887766442      2456667777888888888888877766432222222221   2


Q ss_pred             HHH--HHhccCcHHHHHHHHHHHhh
Q 006627          483 LLN--ACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       483 l~~--~~~~~~~~~~a~~~~~~~~~  505 (638)
                      ...  .+...+++..|-+.|-....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            222  23567889999888877765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.94  E-value=3.3  Score=36.99  Aligned_cols=67  Identities=7%  Similarity=-0.087  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHhhcCChH-------HHHHHHHHHhccC--CC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627          546 IVWGALLAASKLHKNPS-------MGEIAATQILEIE--PQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  612 (638)
                      ..+..+.+.|...|+.+       .|...|+++.+.+  |.    ......++|.+..+.|++++|.+.|.++...+-..
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            34455566676666644       4555555555432  22    24577889999999999999999999997654433

>smart00028 TPR Tetratricopeptide repeats

Probab=87.91  E-value=0.94  Score=25.21  Aligned_cols=26  Identities=8%  Similarity=0.013  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          581 YNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      .+..++.++...|++++|...++...
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.87  E-value=24  Score=33.53  Aligned_cols=49  Identities=18%  Similarity=0.193  Sum_probs=24.2

Q ss_pred             hhHHHHHHHHHHCCCCCCcccHHHHHHHHHc--c----cCchHHHHHHHHHHHhC
Q 006627           53 SSALNIYAFMRKNGSEVDNFTIPTILKACAQ--V----LMTHLGKEIHGFAIKNG  101 (638)
Q Consensus        53 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~  101 (638)
                      +..+.+++.|.+.|..-+..+|.+..-....  .    .....+..+++.|++..
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H  133 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH  133 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence            3445566666666665555554443322222  1    12334556666666553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.55  E-value=41  Score=35.47  Aligned_cols=212  Identities=12%  Similarity=0.045  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-cCCHHHHHHHHHcCCCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK-CGDVNGAYRLFSEAIYR-DICMWNAMMAGYGM----HGCGEEALIF  464 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~  464 (638)
                      +.+.|..++....+.| .|+....-..+..... ..+...|.++|....+. .+..+-.+..+|..    ..+.+.|..+
T Consensus       308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            4455666666665555 3333322222222222 13455666666554422 23333333333322    2366777777


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHH
Q 006627          465 FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL---GR----AGLLDEAHEMIK  537 (638)
Q Consensus       465 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~  537 (638)
                      +.+..+.| .|-...-...+..+.. ++++.+.-.+..+.+- +.+-....-..+....   ..    ..+.+.+...+.
T Consensus       387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~  463 (552)
T KOG1550|consen  387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS  463 (552)
T ss_pred             HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence            77777776 4432222222333333 5565555555544432 3322111111111111   11    125556666666


Q ss_pred             hCCCCCCHhhHHHHHHHHhhc----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 006627          538 SMPLRPNMIVWGALLAASKLH----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA---NRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       538 ~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~  609 (638)
                      +...+-+......+...|...    .+++.|...+.++-+..   +.....++..+-.-   .++..|.+++++..+.+
T Consensus       464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence            664444555555565555433    36788888888887766   56677777765432   12688888888876543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.50  E-value=0.65  Score=38.57  Aligned_cols=18  Identities=6%  Similarity=-0.034  Sum_probs=10.3

Q ss_pred             CCHhhHHHHHHHhcccCc
Q 006627          170 PSEVAMISMVSLFADVAD  187 (638)
Q Consensus       170 p~~~t~~~ll~~~~~~~~  187 (638)
                      ++...|..+++.+...+.
T Consensus       123 ~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen  123 DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             SSSHHHHHHHHHHCTSTC
T ss_pred             CcHHHHHHHHHHHHhcCc
Confidence            445666666666655443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.41  E-value=0.37  Score=28.09  Aligned_cols=29  Identities=10%  Similarity=-0.175  Sum_probs=24.6

Q ss_pred             cccCCcchHhhhhHHHhhhhcCChhHHHH
Q 006627            3 IKNGFLNLEQTRQCHAHIIKTHFKFSYTN   31 (638)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   31 (638)
                      |+..|.|...|+.|..+|...|++++|++
T Consensus         6 ie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    6 IELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            45566799999999999999999999863

>PRK11619 lytic murein transglycosylase; Provisional

Probab=87.33  E-value=46  Score=35.76  Aligned_cols=78  Identities=6%  Similarity=-0.068  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC
Q 006627          211 IATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG  290 (638)
Q Consensus       211 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  290 (638)
                      ....-+..+.+.++++....++.. ...+.........+....|+.++|......+-..|. .....+..++..+.+.|.
T Consensus       101 Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~  178 (644)
T PRK11619        101 LQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK  178 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence            334444455566777766663322 223444445566677777777777666666654442 234455555555544443

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.95  E-value=23  Score=37.28  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             HHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC---------c-hhHHHHHHHHHhcCChHHHH
Q 006627          397 WLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAI-YRD---------I-CMWNAMMAGYGMHGCGEEAL  462 (638)
Q Consensus       397 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---------~-~~~~~l~~~~~~~~~~~~A~  462 (638)
                      .++.+|+.+--.|+   ..+...++-.|....+++...++.+.+. -||         + ..|.-.+.--.+-|+-++|+
T Consensus       184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL  263 (1226)
T KOG4279|consen  184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL  263 (1226)
T ss_pred             HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence            34455554432333   2333444445555555666555555443 111         1 11222222223345667777


Q ss_pred             HHHHHHHHcC--CCCcHHH-----HHHH--HHHHhccCcHHHHHHHHHHHhhhcCCCCChhH---HHHH-----------
Q 006627          463 IFFVDMERSG--VKPNGIT-----FIGL--LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH---YGCM-----------  519 (638)
Q Consensus       463 ~~~~~m~~~~--~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l-----------  519 (638)
                      ...-.|.+..  +.||...     |.-+  -..|...+..+.|.+.|++..   .+.|+...   +..|           
T Consensus       264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens  340 (1226)
T KOG4279|consen  264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS  340 (1226)
T ss_pred             HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence            7666655432  3455432     2211  122445566677777777764   45554332   1111           


Q ss_pred             ----------HHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          520 ----------VDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       520 ----------~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                                -..+.+.|..++-.++|+-          -.++.+..-.+|+.+|.++.+.++++.|.....-..+.
T Consensus       341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~me  407 (1226)
T KOG4279|consen  341 LELQQIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTME  407 (1226)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHH
Confidence                      1223444444444444432          12345566788999999999999999987544333333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.35  E-value=63  Score=36.38  Aligned_cols=125  Identities=10%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             CChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhc----ccCChhhHHHHH
Q 006627          223 GNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECG----FVGGLQLGKWLH  298 (638)
Q Consensus       223 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~  298 (638)
                      ++++.|+.-+..+.   ...|...++.--+.|-+.+|+.++        +|+...+..+..+|+    ....++.|.-.|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            56667766665554   334555566556677788887765        466666655554443    233444443333


Q ss_pred             HHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cchh--HHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          299 AYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMI--WNAVISAYAQAHCIDKAFELFIHM  367 (638)
Q Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~~~~~~a~~~~~~m  367 (638)
                      +..=+.         ...+.+|..+|+|++|..+-.++... +...  -..|+..+...++.-+|-+++.+.
T Consensus       963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            322111         12344555556666666555555433 2111  134455555555555555555443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=85.81  E-value=0.79  Score=44.94  Aligned_cols=102  Identities=10%  Similarity=0.042  Sum_probs=66.5

Q ss_pred             HHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCC
Q 006627          484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC-MVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKN  560 (638)
Q Consensus       484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~  560 (638)
                      +......+.++.|..++.++++   +.|+...|.. -..++.+.+++..|+.-+.++ ...|. ...|..-..++...+.
T Consensus        11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            4455667778888888888874   4565444332 236677778887777766555 44553 3444444456666777


Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      +.+|...++....+.|+++.+...+-.+
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            7888888888888888876665555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.78  E-value=1.5  Score=26.70  Aligned_cols=27  Identities=15%  Similarity=0.009  Sum_probs=16.5

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      +++.+...+...|++++|..+++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            455566666666666666666666654

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.56  E-value=7.7  Score=36.02  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-C--------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627          406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-R--------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN  476 (638)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  476 (638)
                      |.+....+...++..-....+++.+..++-++.. |        ...+|-.+    +-.-++++++.++..=++-|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence            4444455555555555555666666666544431 1        11222222    222356677777777777788888


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      ..++..++..+.+.+++.+|..+...|..
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            88888888888888888887777766655

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.55  E-value=41  Score=33.49  Aligned_cols=120  Identities=9%  Similarity=0.006  Sum_probs=73.3

Q ss_pred             hcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHH
Q 006627          182 FADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINE  258 (638)
Q Consensus       182 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  258 (638)
                      -...|++..|.+-.....+..+.   ++.........+...|+++.+...+.....   ....+...+++...+.|+++.
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            33556766665555555555444   333334444556677888888887766553   445567778888888888888


Q ss_pred             HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc
Q 006627          259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG  305 (638)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  305 (638)
                      |..+-.-|....+. +..............|-++++.-.|+.+...+
T Consensus       376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            88888888766543 22222222223334555677777776665443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.38  E-value=5.4  Score=29.73  Aligned_cols=59  Identities=12%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      ++.+-++.+....+-|++......+++|.+.+++..|.++++-.+.+  ...+...|..++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l   83 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence            45555666666678888888888888898888898898888877653  222444565554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.01  E-value=46  Score=33.58  Aligned_cols=47  Identities=13%  Similarity=-0.055  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      .+....+..++.++.|...-...+..+..-|....++++|++++..+
T Consensus       185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i  231 (711)
T COG1747         185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI  231 (711)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            34444444444443333333334444444455555555555555533

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.73  E-value=2.8  Score=42.27  Aligned_cols=100  Identities=18%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             hccCcHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHH
Q 006627          488 SHAGLVTEGKSVFDKMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       488 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~  563 (638)
                      ...|+...|.+.+..+.   ...|.  ....-.|...+.+.|...+|..++... . ....+.++..+.+++....+.+.
T Consensus       618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            45788888888887775   33442  233445667777888888888877654 2 23345677778888888899999


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      |++.++++++++|+++..-..|..+-+
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999998888777655543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.53  E-value=5.1  Score=30.21  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      +..+-++.+....+-|++......+++|.+.+++..|.++++-++.+.+  +....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence            4445555666667788898899999999999999999999988876433  33336666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.38  E-value=5.6  Score=29.65  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627           53 SSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ  114 (638)
Q Consensus        53 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  114 (638)
                      -++.+-++.+.....-|++....+.|++|.+.+|+..|.++++.++... ..+...|..+++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            3444555555566667777777777777777777777777777665332 123344554443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=84.32  E-value=45  Score=32.93  Aligned_cols=71  Identities=11%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE  388 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  388 (638)
                      ..|+.-|...|+..+|...++++.-|   ....+.+++.+.-+.|+-...+.+++..-..|+    .|.+.+-.+|.+
T Consensus       513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R  586 (645)
T KOG0403|consen  513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER  586 (645)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence            46778888899999999999988766   456788888888888888888888887766553    344455444433

>smart00028 TPR Tetratricopeptide repeats

Probab=84.26  E-value=2  Score=23.67  Aligned_cols=32  Identities=16%  Similarity=-0.047  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      ..+..+...+...|+++.|...++++++.+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35667788889999999999999999998874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.97  E-value=2.3  Score=26.55  Aligned_cols=27  Identities=7%  Similarity=0.030  Sum_probs=22.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          583 VLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      ..|+.+|...|+.+.|+++++.+.+.+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            468899999999999999999887554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.68  E-value=26  Score=29.67  Aligned_cols=117  Identities=12%  Similarity=0.059  Sum_probs=54.1

Q ss_pred             HhcCCHHHHHHHHHcCCCCCchhHHHHHH-----HHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHH--HHHHhccCcH
Q 006627          422 AKCGDVNGAYRLFSEAIYRDICMWNAMMA-----GYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGL--LNACSHAGLV  493 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~~~  493 (638)
                      .+.++.++|+.-|..+.+.+--.|..|..     .....|+...|+..|++.-.-...|-.. -...|  ...+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34455566666665555544444433322     2344555666666666555432222221 11111  1223455555


Q ss_pred             HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      +....-.+.+... +.+.....-..|.-+-.+.|++.+|.++|..+
T Consensus       149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            5555555544432 22223333344445555566666666666554

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.58  E-value=17  Score=27.46  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627           86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRF  165 (638)
Q Consensus        86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (638)
                      ..++|..|-+.+...+ .....+--..+..+...|++++|..+.+.+.-||...|-+|-.  .+.|-.+++..-+..|..
T Consensus        20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            5677888888877665 2233344445666788999999999999998899999877654  466777777777777877


Q ss_pred             CCCcCCHhhH
Q 006627          166 MDIRPSEVAM  175 (638)
Q Consensus       166 ~~~~p~~~t~  175 (638)
                      .| .|...+|
T Consensus        97 sg-~p~lq~F  105 (115)
T TIGR02508        97 SG-DPRLQTF  105 (115)
T ss_pred             CC-CHHHHHH
Confidence            76 5555555

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.31  E-value=68  Score=34.26  Aligned_cols=170  Identities=11%  Similarity=0.079  Sum_probs=89.2

Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHCCCCCC---cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhc
Q 006627           42 LVTSYIKNNKPSSALNIYAFMRKNGSEVD---NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSE  118 (638)
Q Consensus        42 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  118 (638)
                      =++.+.+.+.+++|++.-+....  ..|.   .......+..+...|+++.|-...-.|..    .+...|..-+..+..
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e  435 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE  435 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence            35566778888888877665542  2332   23455566667777888887777776653    344555555555555


Q ss_pred             CCChhHHHHHhccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHH
Q 006627          119 CGSLVSARYLFDEMPN-RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHAC  197 (638)
Q Consensus       119 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  197 (638)
                      .++......++-.-+. -+...|..++..+.. .+...-.++..+.     +++...-..++++.  .          ..
T Consensus       436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~--~----------~q  497 (846)
T KOG2066|consen  436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT--E----------PQ  497 (846)
T ss_pred             ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc--c----------hH
Confidence            5554443333322222 245678888887776 3333333332221     22222222222211  0          11


Q ss_pred             HHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCC
Q 006627          198 VVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNS  239 (638)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  239 (638)
                      ..+...    +......|+..|...+++..|.+++-...+++
T Consensus       498 ~~q~Se----~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~  535 (846)
T KOG2066|consen  498 IKQNSE----STALLEVLAHLYLYDNKYEKALPIYLKLQDKD  535 (846)
T ss_pred             HHhhcc----chhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence            111111    22334457777888888888887776666544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.19  E-value=4.7  Score=35.30  Aligned_cols=64  Identities=11%  Similarity=0.018  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .+..+..+.+.+..++|+...+.- +.+| |......++..++..|++++|..-++-+-++.|+..
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            344566788889999999887654 5566 566667788889999999999999999999999854

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.19  E-value=17  Score=27.35  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=40.9

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI  481 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~  481 (638)
                      +..+...|++++|..+.+....||...|.+|..  .+.|-.+.+..-+.+|..+| .|....|.
T Consensus        46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa  106 (115)
T TIGR02508        46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV  106 (115)
T ss_pred             HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            344667788888888888877778777766643  35566666666666777766 55554443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PRK12798 chemotaxis protein; Reviewed

Probab=83.12  E-value=50  Score=32.55  Aligned_cols=179  Identities=11%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             cCCHHHHHHHHHcCCCC----CchhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCcHH
Q 006627          424 CGDVNGAYRLFSEAIYR----DICMWNAMMAGY-GMHGCGEEALIFFVDMERSGVKPNG----ITFIGLLNACSHAGLVT  494 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~  494 (638)
                      .|+..+|.+.+..+...    ....+-.|+.+- ....++.+|+++|++..-.  -|-.    .....-+....+.|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence            35556666655555422    223344444432 3344666777777665532  3322    22333344556777777


Q ss_pred             HHHHHHHHHhhhcCCCCChhHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHH
Q 006627          495 EGKSVFDKMVHGLGLVPKIEHYGC-MVDLLGRA---GLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQ  570 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~  570 (638)
                      ++..+-....++|...|-...|.. +...+.+.   -..+.-..++..|.-.-....|..+.......|+.+.|.-..++
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~  282 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER  282 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            776666666665554554333332 22222222   23344444455553222345666666777777887777777777


Q ss_pred             HhccCCCCcchHHHH-----HHHHHhcCCHHHHHHHHHHH
Q 006627          571 ILEIEPQNYGYNVLM-----SNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       571 ~~~~~p~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~  605 (638)
                      +..+.+.+ ..-...     +-+-.-..++++|.+.++.+
T Consensus       283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I  321 (421)
T PRK12798        283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI  321 (421)
T ss_pred             HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence            77765331 122222     22223344566666655554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.72  E-value=1.3e+02  Score=37.01  Aligned_cols=26  Identities=8%  Similarity=-0.189  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      .++-.+.|+.+.+..|.....++.++
T Consensus      1771 s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1771 SKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             HHHHHHHHHHHHHHcccccCceeeHH
Confidence            35566777777777776556666665

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.47  E-value=18  Score=33.93  Aligned_cols=54  Identities=19%  Similarity=0.085  Sum_probs=30.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                      |.-+..+.|+..+|.+.++.+.+.  .|-.   .....++.+|....-+.+...++-+.
T Consensus       281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY  337 (556)
T KOG3807|consen  281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY  337 (556)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444555667777777777766554  2211   23445666666665555555555444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.31  E-value=1.5  Score=36.41  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             HHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006627           76 TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEE  155 (638)
Q Consensus        76 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  155 (638)
                      .++..+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++....   .-...++..|.+.|.++.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35666777788888888888888877667788999999999999888888888884433   333445666666677777


Q ss_pred             HHHHHHHh
Q 006627          156 ALEVMREM  163 (638)
Q Consensus       156 a~~~~~~m  163 (638)
                      +.-++.++
T Consensus        89 a~~Ly~~~   96 (143)
T PF00637_consen   89 AVYLYSKL   96 (143)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHc
Confidence            77666654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.95  E-value=78  Score=33.97  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             CChHHHHHHHhccCC-------CCcccHHHHHHHHH--hCCChHHHHHHHHHHHHcC---------ccCChHhHHHHHHH
Q 006627          223 GNLAYAKQLFNRLNQ-------NSVVSWTVMISGYI--RCNEINEGVRLFAEMIEEN---------VFPSEITILSLIIE  284 (638)
Q Consensus       223 g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~---------~~p~~~~~~~ll~~  284 (638)
                      ++...|.+.++.+..       +.+..+-.++.+..  +.+..+++.+.++.+....         ..|-..++..++..
T Consensus       153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l  232 (608)
T PF10345_consen  153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL  232 (608)
T ss_pred             ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence            566666666655442       11222333333333  3455677777777664322         13455566677766


Q ss_pred             hcc--cCChhhHHHHHHHHH
Q 006627          285 CGF--VGGLQLGKWLHAYIL  302 (638)
Q Consensus       285 ~~~--~~~~~~a~~~~~~~~  302 (638)
                      ++.  .|+++.+...++.+.
T Consensus       233 ~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  233 CCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            554  566667766665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.91  E-value=9.2  Score=35.56  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhh
Q 006627          305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DV-----MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVT  378 (638)
Q Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  378 (638)
                      |.+.+..+...++..-....+++.+...+-++... +.     .+-...++. +-.-++++++.++..=.+-|+-||.++
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence            33344444444444444456666666666555421 11     111222333 334567788888888888899999999


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627          379 MVGLLSLCTEAGALEMGKWLHTYIEKQG  406 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~  406 (638)
                      +..+|+.+.+.+++..|.++.-.|....
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999988877776654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.65  E-value=68  Score=32.44  Aligned_cols=141  Identities=10%  Similarity=0.039  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC------hhHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK------IEHYG  517 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~  517 (638)
                      .|..++++|... ..++-..+|+++.+.. -.|...-..|+..|.+ ++.+.+..+|.++..+  +.|.      .+.|.
T Consensus       101 al~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWe  175 (711)
T COG1747         101 ALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWE  175 (711)
T ss_pred             HHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHH
Confidence            344444555444 3355555666655543 1222223333333333 5566666666666542  2221      12233


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC----CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          518 CMVDLLGRAGLLDEAHEMIKSM----PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      .+....  ..+.+.-..+..+.    +..--...+..+..-|....|+.+|++++..+++.+..|..+.-.++.-+..
T Consensus       176 KL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         176 KLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             HHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            322211  23445555555444    2222334444555667778899999999999999888776666555555444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=80.41  E-value=50  Score=30.79  Aligned_cols=111  Identities=10%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHH-cCccCChHhHHHHHHHhcc-cC-ChhhHHHHHHHHHH-hcCCCchhhHHHHHHHHHhcCChHHHHH
Q 006627          256 INEGVRLFAEMIE-ENVFPSEITILSLIIECGF-VG-GLQLGKWLHAYILR-NGFEFSLAMANALVDMYGKCREIRSART  331 (638)
Q Consensus       256 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~  331 (638)
                      ..+|+++|+.... ..+.-|..+...+++.... .+ ....--++.+.+.. .+-.++..+...++..+++.+++..-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            4555555553222 2344555666666655544 11 12222233333332 2345666677777777778888887777


Q ss_pred             HHhcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 006627          332 LFDGMKS-----KDVMIWNAVISAYAQAHCIDKAFELFIH  366 (638)
Q Consensus       332 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~  366 (638)
                      +++....     .|...|..+|......|+..-...+..+
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            7776543     3667778888877777776655444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.15  E-value=23  Score=36.32  Aligned_cols=24  Identities=25%  Similarity=0.124  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHh
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKS  538 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~  538 (638)
                      -|..|.++....|++..|.+.|.+
T Consensus       668 Kw~~Lg~~al~~~~l~lA~EC~~~  691 (794)
T KOG0276|consen  668 KWRQLGDAALSAGELPLASECFLR  691 (794)
T ss_pred             HHHHHHHHHhhcccchhHHHHHHh
Confidence            344455555555555555555444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.08  E-value=77  Score=33.49  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhCCCCCCHhhHHHHHHHHh----hcCChHHH
Q 006627          492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR---AGLLDEAHEMIKSMPLRPNMIVWGALLAASK----LHKNPSMG  564 (638)
Q Consensus       492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A  564 (638)
                      +.+.|..++.+..+. |. |+...+  +..++..   ..+...|.++|..+...-.......+...+.    ...+.+.|
T Consensus       308 d~~~A~~~~~~aA~~-g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL-GN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhc-CC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            455566666666542 22 222221  2222221   1345566666666522222222222222221    22356777


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhcCC
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~  610 (638)
                      ...++++-+.++  +.+...++..+.-- ++++.+.-.+..+.+.+.
T Consensus       384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence            777777777662  33333333332222 666666666666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	638
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 68.7 bits (166), Expect = 4e-12
 Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 7/188 (3%)

Query: 366 HMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425
             + +   P E  +  LL       +L++ +       +  L        A         
Sbjct: 82  CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141

Query: 426 DVNGAYRLF-------SEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478
            +  A+ L         +     + M+NA+M G+   G  +E +     ++ +G+ P+ +
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201

Query: 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKS 538
           ++   L                 + +   GL  +      ++    RA +L   H++  +
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261

Query: 539 MPLRPNMI 546
             L P + 
Sbjct: 262 FSLPPQLP 269

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.7 bits (127), Expect = 1e-07
 Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 8/151 (5%)

Query: 38  RYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEI---H 94
           +   L+                    +         +    K C       L   +   H
Sbjct: 94  QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153

Query: 95  GFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR----DVVSWSTMIRGYHRG 150
               +        + NA++  ++  G+     Y+   + +     D++S++  ++   R 
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213

Query: 151 GLPEEALE-VMREMRFMDIRPSEVAMISMVS 180
                 +E  + +M    ++   +    ++S
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.1 bits (123), Expect = 5e-07
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 273 PSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL 332
           P E  +  L+ E      L + +       +           A         ++  A  L
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 333 FDGMKSK-------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL 385
                 +        + ++NAV+  +A+     +   +   +K + + P+ ++    L  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 386 CTEAG 390
                
Sbjct: 210 MGRQD 214

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 47.9 bits (112), Expect = 1e-05
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 54  SALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALI 113
            A  +    R+         +  +L+     L   + +   G   +  L G      A  
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 114 QMYSECGSLVSARYLFDEMPNR-------DVVSWSTMIRGYHRGGLPEEALEVMREMRFM 166
           +       L  A +L      +        +  ++ ++ G+ R G  +E + V+  ++  
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 167 DIRPSEVAMISMV 179
            + P  ++  + +
Sbjct: 195 GLTPDLLSYAAAL 207

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.6 bits (106), Expect = 5e-05
 Identities = 13/139 (9%), Positives = 39/139 (28%), Gaps = 10/139 (7%)

Query: 214 ALIDMYSKCGNLAYAKQLFNRLNQN-------SVVSWTVMISGYIRCNEINEGVRLFAEM 266
           A          L  A  L    +         ++  +  ++ G+ R     E V +   +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 267 IEENVFPSEITILSLIIECGFVGGLQLGKW--LHAYILRNGFEFSLAMANALVDMYGKCR 324
            +  + P  ++  +  ++C        G        + + G +        L+    +  
Sbjct: 192 KDAGLTPDLLSY-AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 325 EIRSARTLFDGMKSKDVMI 343
            +++   +         + 
Sbjct: 251 VLKAVHKVKPTFSLPPQLP 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 80/525 (15%), Positives = 155/525 (29%), Gaps = 166/525 (31%)

Query: 166 MDIRPSEVAMI--SMVSLFAD--VADVDLGKAIHACVVRNCKD--EKLGVAIATALIDMY 219
           MD    E       ++S+F D  V + D            CKD  +     ++   ID  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD------------CKDVQDMPKSILSKEEIDHI 54

Query: 220 SKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMI------------ 267
               +          ++    + WT++           E V+ F E +            
Sbjct: 55  IMSKD---------AVSGTLRLFWTLLSKQ-------EEMVQKFVEEVLRINYKFLMSPI 98

Query: 268 -EENVFPSEITILSLIIEC--GFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCR 324
             E   PS +T +   IE         Q+    +  + R   +  L +  AL        
Sbjct: 99  KTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYN--VSR--LQPYLKLRQAL-------L 145

Query: 325 EIRSARTLF-DGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIH-MKVSKVRPNEVTMV 380
           E+R A+ +  DG+    K  +     +     ++ +    +  I  + +      E  + 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV----ALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY- 439
            L  L  +       +  H+   K  +     ++  L              RL     Y 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELR-------------RLLKSKPYE 244

Query: 440 ------RDIC---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490
                  ++     WNA         C                K        +L      
Sbjct: 245 NCLLVLLNVQNAKAWNAFN-----LSC----------------K--------IL------ 269

Query: 491 GLVTEGKSVFDKMVHGLGLVPKIEHYGC------MVDLLGRA---GLLDEAHEMIKSMPL 541
            L T  K V D +         ++H+        +  LL +       D   E++ + P 
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 542 RPNMIVWGALLAASKLH-------KNPSMGEIAATQILEIEPQNY--GYNVLM-----SN 587
           R ++I     +                 +  I  + +  +EP  Y   ++ L      ++
Sbjct: 329 RLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 588 I-YAVANR-WNDVAG--VRRVMKEIR----VKKEPGFSSVEVNGL 624
           I   + +  W DV    V  V+ ++     V+K+P  S++ +  +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 82/646 (12%), Positives = 166/646 (25%), Gaps = 241/646 (37%)

Query: 39  YNSLVTSY-IKNNKPSSALNIYAFMRK---NGSEV---DNFTIP---TILKACAQVLMTH 88
           Y  L++    +  +PS    +Y   R    N ++V    N +       L+     L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 89  LGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYH 148
               I G        G               G                  +W        
Sbjct: 151 KNVLIDGVL------G--------------SGK-----------------TW-------- 165

Query: 149 RGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLG 208
              +   AL+V    +       ++  +++                     +NC   +  
Sbjct: 166 ---V---ALDVCLSYKVQCKMDFKIFWLNL---------------------KNCNSPE-- 196

Query: 209 VAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIE 268
                 +++M  K         L  +++ N         +  +R + I   +R     ++
Sbjct: 197 -----TVLEMLQK---------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LK 239

Query: 269 ENVFPSEITILSLIIECGFVGGLQLGK-WLHAYILRNGFEFSLAMANALVDMYGKCREIR 327
              + +      L++         L     +A    N F                C    
Sbjct: 240 SKPYEN-----CLLV---------LLNVQ-NAKAW-NAFNL-------------SC---- 266

Query: 328 SARTLFDGMKSKDVMIWNAVISAYAQAHCI---------DKAFELF---IHMKVSKVRPN 375
             + L   + ++   + + + +A      +         D+   L    +  +   + P 
Sbjct: 267 --KIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PR 320

Query: 376 EVTMVGLLSLCTEAGALEMGK-----WLHTYIEKQG--LEVDV-ILKTALV-DMYAKCG- 425
           EV       L   A ++  G      W H   +K    +E  + +L+ A    M+ +   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 426 ---DVNGAYRLFS----EAIYRDI------CMWNAMMAG------YGMHGC--------- 457
                +    L S    + I  D+          +++          +            
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 458 GEEAL-IFFVD--MERSGVKPNGIT----------FIGL-LNACSHAGLVTEGKSVF-DK 502
            E AL    VD          + +            IG  L    H   +T  + VF D 
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD- 499

Query: 503 MVHGLG-LVPKIEHYGCMVDLLGRAGLLD--------EAHEMIKSMPLRPNMIVWGALL- 552
                  L  KI H            +L+        + + +  + P    ++   A+L 
Sbjct: 500 ----FRFLEQKIRHDS--TAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLV--NAILD 550

Query: 553 ----AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594
                   L  +        T +L I             I+  A++
Sbjct: 551 FLPKIEENLICSKY------TDLLRIALMAED-----EAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 38/260 (14%), Positives = 92/260 (35%), Gaps = 50/260 (19%)

Query: 2   KIKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL---TRYNSLVTSYI--KNNK-PSSA 55
            I++G    +  +  +   + T  + S  N++ P      ++ L    +   +   P+  
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLS---VFPPSAHIPTIL 391

Query: 56  LNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGK-------EIHG--FAIKNGLDGDA 106
           L++  F      +V    +  ++    +  +  + K        I      +K  L+ + 
Sbjct: 392 LSLIWF------DVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEY 443

Query: 107 YVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGL-PEEALEVMREM-- 163
            +  +++  Y+    +       D +P      + + I G+H   +   E + + R +  
Sbjct: 444 ALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFL 498

Query: 164 --RFMD--IRPSEVAMISMVSLFADVADVDL-GKAIHACVVRNCKDEKLGVAIATALIDM 218
             RF++  IR    A  +  S+   +  +      I       C ++     +  A++D 
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-------CDNDPKYERLVNAILDF 551

Query: 219 YSKCG-NLAYAKQLFNRLNQ 237
             K   NL  +K  +  L +
Sbjct: 552 LPKIEENLICSK--YTDLLR 569

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	638
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.59
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.45
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.39
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.08
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.02
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.99
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.97
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.91
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.85
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.83
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.78
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.69
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.61
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.52
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.47
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.45
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.4
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.39
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.3
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.27
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.27
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.13
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.06
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.02
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.88
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.69
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.61
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.53
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.39
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.22
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.19
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.98
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.98
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.92
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.64
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.45
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.88
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.66
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.49
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.25
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.22
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.84
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.54
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.34
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.74
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.33
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.78
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.4
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.97
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.9
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.69
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.03
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.22
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.08
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.54
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	86.29
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.16
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.94
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.29
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.25
2p58_C	116	Putative type III secretion protein YSCG; type III	83.57
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.36
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	80.13

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-40  Score=353.04  Aligned_cols=483  Identities=10%  Similarity=-0.027  Sum_probs=403.8

Q ss_pred             hhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHH
Q 006627          115 MYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAI  194 (638)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  194 (638)
                      .+.+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|..  ..|+..++..+..++...|+++.|..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence            345667778888888888888899999999999999999999999999985  578989999999999999999999999


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCC-------------------cccHHHHHHHHHhCCC
Q 006627          195 HACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNS-------------------VVSWTVMISGYIRCNE  255 (638)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~g~  255 (638)
                      ++.+...  +  +++.++..++.+|.+.|++++|.++|+++...+                   ..+|+.++.+|.+.|+
T Consensus       140 ~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  215 (597)
T 2xpi_A          140 LTKEDLY--N--RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN  215 (597)
T ss_dssp             HHHTCGG--G--TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcc--c--cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence            9977543  2  278899999999999999999999999655433                   6789999999999999


Q ss_pred             hHHHHHHHHHHHHcCccCC-hHhHHHHHHHhcccCChhhH--HHH-HHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHH
Q 006627          256 INEGVRLFAEMIEENVFPS-EITILSLIIECGFVGGLQLG--KWL-HAYILRNGFEFSLAMANALVDMYGKCREIRSART  331 (638)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  331 (638)
                      +++|.++|++|.+.+  |+ ...+..+...+...+..+..  ..+ +..+...+..+...+++.++..|.+.|++++|.+
T Consensus       216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            999999999998864  44 34455555444433332221  111 4444445555566677778889999999999999


Q ss_pred             HHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 006627          332 LFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV  409 (638)
Q Consensus       332 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  409 (638)
                      +|+++.+  ++..+|+.++..|.+.|++++|+++|+++...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  371 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE  371 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence            9999987  788999999999999999999999999998765 4477889999999999999999999999999765 67


Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA  486 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  486 (638)
                      +..++..++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  450 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ  450 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            88999999999999999999999999875   3467899999999999999999999999999874 5577899999999


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HhhHHHHHHHHhh
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN--MIVWGALLAASKL  557 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~  557 (638)
                      |.+.|++++|.++|+++.+.  .+.+..+|..++.++.+.|++++|.++|+++       +..|+  ..+|..++.+|..
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999873  4557889999999999999999999999988       34676  7899999999999


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|++++|...++++++++|+++.+|..++.+|.+.|++++|.++++++.+..+
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999987654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-39  Score=344.77  Aligned_cols=495  Identities=9%  Similarity=-0.044  Sum_probs=334.1

Q ss_pred             hhhhcCChhHHHHhhhhh-----hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHH
Q 006627           19 HIIKTHFKFSYTNIINPL-----TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEI   93 (638)
Q Consensus        19 ~~~~~g~~~~A~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~   93 (638)
                      .+.+.|.+..+...|..+     ..|+.++..+.+.|++++|+.+|++|.+.  .|+..++..++.+|...|++++|..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence            345567777777777766     77999999999999999999999999854  57778899999999999999999999


Q ss_pred             HHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC-------------------CcchHHHHHHHHHhCCCch
Q 006627           94 HGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR-------------------DVVSWSTMIRGYHRGGLPE  154 (638)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~  154 (638)
                      ++.+...  ++++.+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|+++
T Consensus       140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence            9987644  688999999999999999999999999964432                   3678999999999999999


Q ss_pred             HHHHHHHHhHHCCCcCC-HhhHHHHHHHhcccCchHHH--HHH-HHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627          155 EALEVMREMRFMDIRPS-EVAMISMVSLFADVADVDLG--KAI-HACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ  230 (638)
Q Consensus       155 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  230 (638)
                      +|+++|++|.+.  .|+ ...+..+...+...+..+.+  ..+ +..+...+...  ...++..++..|.+.|++++|.+
T Consensus       218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF--LRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH--HHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH--HHHHHHHHHHHHcCcchHHHHHH
Confidence            999999999875  344 33444444433333222211  111 22222222222  33344444555555666666666


Q ss_pred             HHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 006627          231 LFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEF  308 (638)
Q Consensus       231 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  308 (638)
                      +|+++.+  ++..+|+.++..+.+.|++++|.++|+++.+.+                                    +.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~  337 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------------------------PY  337 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TT
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------------------------------------cc
Confidence            6665554  455555555555555555555555555554432                                    11


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE  388 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  388 (638)
                                                     +..+++.++.++.+.|++++|..+++++.... +.+..++..+...|.+
T Consensus       338 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  385 (597)
T 2xpi_A          338 -------------------------------NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC  385 (597)
T ss_dssp             -------------------------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred             -------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence                                           22334444444445555555555555544321 2334455555555555


Q ss_pred             cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHH
Q 006627          389 AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFF  465 (638)
Q Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~  465 (638)
                      .|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|.++|
T Consensus       386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
T 2xpi_A          386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL  464 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555555555443 3445556666666666666666666665543   235667777778888888888888888


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 006627          466 VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-  539 (638)
Q Consensus       466 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-  539 (638)
                      +++.+.. +.+..+|..++..|.+.|++++|.++|+++.+..   +..|+  ..+|..++.+|.+.|++++|.++++++ 
T Consensus       465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            8888764 5567888888888999999999999988887632   55676  678899999999999999999999887 


Q ss_pred             CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      ...| +..+|..+...|...|++++|...++++++++|+++..+..++.+|..
T Consensus       544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            3344 788999999999999999999999999999999999999999988753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.1e-26  Score=232.51  Aligned_cols=371  Identities=11%  Similarity=0.028  Sum_probs=270.0

Q ss_pred             HHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627          217 DMYSKCGNLAYAKQLFNRLNQ--N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL  293 (638)
Q Consensus       217 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  293 (638)
                      ..+.+.|++++|.+.++.+.+  | +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            334455555555555554432  2 22334444555555666666666665555432 2344556666666666666666


Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006627          294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVS  370 (638)
Q Consensus       294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  370 (638)
                      |...|+.+.+.. +.+...+..+...+...|++++|...|+++.+  | +...+..+...+...|++++|.+.|+++...
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            666666655543 23344566666677777777777777666542  2 3445666777777788888888888887764


Q ss_pred             CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHH
Q 006627          371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNA  447 (638)
Q Consensus       371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~  447 (638)
                      . +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+...+...|++++|...+++..   ..+..++..
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence            2 2345677777788888888888888888888765 5566778888888888888888888887655   335678888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG  527 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  527 (638)
                      +..++...|++++|+..++++.+.+ +.+..++..+..++.+.|++++|.+.++++.+  ..+.+...+..++.++.+.|
T Consensus       243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcC
Confidence            8888999999999999999988864 44567888899999999999999999999987  34567788889999999999


Q ss_pred             ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          528 LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       528 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      ++++|.+.++++ ...| +..++..+...+...|++++|...++++++++|+++.++..++.++...|+
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            999999999887 4445 477888899999999999999999999999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=6.1e-26  Score=227.00  Aligned_cols=355  Identities=11%  Similarity=0.054  Sum_probs=308.6

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcC
Q 006627          246 MISGYIRCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCR  324 (638)
Q Consensus       246 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (638)
                      +...+.+.|++++|.+.+..+.+.  .|+. ..+..+...+...|+.+.+...++...+.. +.+...+..+...+.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            345677899999999999998875  4554 455566667788999999999999888764 667889999999999999


Q ss_pred             ChHHHHHHHhcCC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccCchHHHHHHHH
Q 006627          325 EIRSARTLFDGMK--SK-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAGALEMGKWLHT  400 (638)
Q Consensus       325 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~  400 (638)
                      ++++|...|+++.  .| +...|..+..++...|++++|.+.|+++...  .|+.. .+..+...+...|++++|...++
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999875  33 4567999999999999999999999998875  45544 55667778888999999999999


Q ss_pred             HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627          401 YIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG  477 (638)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~  477 (638)
                      .+.+.. +.+..++..+...+...|++++|...|+++.   ..+...|..+...+...|++++|+..+++..+.. +.+.
T Consensus       160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~  237 (388)
T 1w3b_A          160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence            999876 6677899999999999999999999999876   3356788889999999999999999999998864 4457


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~  555 (638)
                      .++..+..++...|++++|.+.++++.+  ..+.+...+..++.++.+.|++++|.+.++++ . .+++..++..+...+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            8899999999999999999999999987  33445678999999999999999999999998 3 345688999999999


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      ...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus       316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999997643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=5e-27  Score=238.13  Aligned_cols=182  Identities=12%  Similarity=0.101  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCCCcccH
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA---------LEMGKWLHTYIEKQGLEVDVIL  413 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  413 (638)
                      .++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+.         ++.|.++|++|.+.|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4566677777777777777777777777777777777777777765443         5667777777777777777777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006627          414 KTALVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH  489 (638)
Q Consensus       414 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  489 (638)
                      |++|+.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            7777777777777777777777665    567777777777777777777777777888777788888888888888888


Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      .|++++|.+++++|.+. +..|+..+|+.++..|..
T Consensus       188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence            88888888888887775 777887777777777654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=5.8e-27  Score=237.68  Aligned_cols=211  Identities=15%  Similarity=0.114  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 006627          258 EGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGM  336 (638)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  336 (638)
                      .+..+.+.+.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.|+.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            344455566666555443 346677777777777777777777777777777777777777777766543221       


Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627          337 KSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA  416 (638)
Q Consensus       337 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (638)
                                     .+.+..++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           22345688889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA  490 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  490 (638)
                      ++.+|++.|++++|.++|++|.    .||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||..++..|...
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999998876    6788999999999999999999999999999999999999999999988764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.3e-24  Score=220.59  Aligned_cols=440  Identities=9%  Similarity=-0.040  Sum_probs=262.8

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627          138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID  217 (638)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (638)
                      ..+......+.+.|++++|+..|+++...  .|+...+..+..++...|+++.|...+..+.+..+.   +..++..+..
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~   81 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHH
Confidence            34556667777888888888888888774  367777777777777777777777777777766544   5667777777


Q ss_pred             HHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhH
Q 006627          218 MYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLG  294 (638)
Q Consensus       218 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  294 (638)
                      ++...|++++|...|+.+..   ++......++..+........+.+.+..+...+..|+...+..-.......      
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  155 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------  155 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc------
Confidence            77777777777777766543   222333334443333333333333333332222222221111100000000      


Q ss_pred             HHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHHHHHH-
Q 006627          295 KWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNAVISAYAQ---AHCIDKAFELFIHMKV-  369 (638)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-  369 (638)
                                ...|+......    +..........   ..+..+ +...+......+..   .|++++|+..++++.. 
T Consensus       156 ----------~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  218 (514)
T 2gw1_A          156 ----------ENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL  218 (514)
T ss_dssp             -----------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             ----------cCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence                      00111111110    11000000000   001111 12233333333443   6777777777777665 


Q ss_pred             ----cCcCC--------ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627          370 ----SKVRP--------NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA  437 (638)
Q Consensus       370 ----~g~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  437 (638)
                          ....|        +...+..+...+...|+++.|...++.+.+... . ...+..+...+...|++++|...++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-R-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                21111        234555666677777778888777777777652 2 666777777777778888877777765


Q ss_pred             CC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh
Q 006627          438 IY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE  514 (638)
Q Consensus       438 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~  514 (638)
                      ..   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+..
T Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~  373 (514)
T 2gw1_A          297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPE  373 (514)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSH
T ss_pred             hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHH
Confidence            52   255677777777778888888888888877653 334567777777788888888888888877763  333456


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HhhHHHHHHHHhh---cCChHHHHHHHHHHhccCCCCcchHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN----MIVWGALLAASKL---HKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .+..++.++.+.|++++|...++++    +..|+    ...+..+...+..   .|++++|...++++++.+|+++..+.
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            7777777888888888888887776    11222    3367777777777   78888888888888888888777888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          584 LMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       584 ~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .++.+|...|++++|.+.+++..+..+
T Consensus       454 ~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          454 GLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            888888888888888888887765443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.2e-23  Score=216.95  Aligned_cols=395  Identities=10%  Similarity=0.004  Sum_probs=260.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627          210 AIATALIDMYSKCGNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF  287 (638)
Q Consensus       210 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  287 (638)
                      ..+......+.+.|++++|...|+++..  |+..+|..+..++.+.|++++|.+.++++.+.+ +.+...+..+..++..
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence            3444555556666666666666665543  555556666666666666666666666665542 2233455556666666


Q ss_pred             cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 006627          288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS----KDVMIWNAVISAYAQAHCIDKAFEL  363 (638)
Q Consensus       288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~  363 (638)
                      .|+++.|...|+.+.+.+ +++......++..+........+.+.+..+..    ++...+..-...............+
T Consensus        86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            666666666666665544 22333333333333322222222222211110    0000000000000000000011111


Q ss_pred             HHHHHHcCc--------CCC-hhhHHHHHHHHh---ccCchHHHHHHHHHHHH-----hCC--------CCcccHHHHHH
Q 006627          364 FIHMKVSKV--------RPN-EVTMVGLLSLCT---EAGALEMGKWLHTYIEK-----QGL--------EVDVILKTALV  418 (638)
Q Consensus       364 ~~~m~~~g~--------~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~  418 (638)
                      ...+.....        .|+ ...+......+.   +.|+++.|...++.+.+     ..-        +.+..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence            111111111        122 233333333333   48999999999999988     311        33467788889


Q ss_pred             HHHHhcCCHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627          419 DMYAKCGDVNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG  496 (638)
Q Consensus       419 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  496 (638)
                      ..+...|++++|...++++.  .|+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  323 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA  323 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999998876  3447788889999999999999999999999764 44667899999999999999999


Q ss_pred             HHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627          497 KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEI  574 (638)
Q Consensus       497 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  574 (638)
                      ...++++.+  ..+.+...+..++.++...|++++|...++++ ...| +..++..+...+...|++++|...++++++.
T Consensus       324 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  401 (514)
T 2gw1_A          324 GKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL  401 (514)
T ss_dssp             HHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999987  34446778899999999999999999999988 3333 5678888999999999999999999999999


Q ss_pred             CCCCcc------hHHHHHHHHHh---cCCHHHHHHHHHHHhhcC
Q 006627          575 EPQNYG------YNVLMSNIYAV---ANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       575 ~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~  609 (638)
                      .|+++.      .+..++.+|..   .|++++|.+.++++.+..
T Consensus       402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~  445 (514)
T 2gw1_A          402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD  445 (514)
T ss_dssp             HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence            998866      99999999999   999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=4.4e-22  Score=208.34  Aligned_cols=428  Identities=11%  Similarity=-0.014  Sum_probs=204.4

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627          138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID  217 (638)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (638)
                      ..|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|+++.|...+..+.+..+.   +..++..+..
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  101 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence            455666667777777777777777776642 234455566666666666666666666666665543   5677777778


Q ss_pred             HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc------CccCChHhHHHHHHHhcccCCh
Q 006627          218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEE------NVFPSEITILSLIIECGFVGGL  291 (638)
Q Consensus       218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~  291 (638)
                      ++...|++++|...|+.+. .+....+..+..+...+....|...++++...      ...|+.......+.    ..+.
T Consensus       102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred             HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence            8888888888888776432 22222222334444455556777777776442      12233333322221    1111


Q ss_pred             hhHHHHHHHHHHhcCCCc-hhhHHHHHHHHHh--------cCChHHHHHHHhcCCCCCc----------hhHHHHHHHHH
Q 006627          292 QLGKWLHAYILRNGFEFS-LAMANALVDMYGK--------CREIRSARTLFDGMKSKDV----------MIWNAVISAYA  352 (638)
Q Consensus       292 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~----------~~~~~li~~~~  352 (638)
                      +.+...+....  ...+. ......+...+..        .|++++|..+++++.+.++          ..+..+...+.
T Consensus       177 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          177 HLEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             HHHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence            11111100000  00000 0011222222211        1245555555555443211          12334444555


Q ss_pred             hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627          353 QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR  432 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  432 (638)
                      ..|++++|...+++....  .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|..
T Consensus       255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  331 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE  331 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            555555555555555543  3344445555555555555555555555555543 3344555555555555555555555


Q ss_pred             HHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627          433 LFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL  509 (638)
Q Consensus       433 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  509 (638)
                      .+++..   ..+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+....
T Consensus       332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            555443   2234455555555555555555555555555442 223344555555555555555555555554432100


Q ss_pred             CC----ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          510 VP----KIEHYGCMVDLLGRA----------GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       510 ~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .+    ....+..+..++.+.          |++++|...++++ ...| +..++..+...+...|++++|...++++++
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            01    111122333444444          5555555555544 2222 344444555555555555555555555555


Q ss_pred             cCCCCcc
Q 006627          574 IEPQNYG  580 (638)
Q Consensus       574 ~~p~~~~  580 (638)
                      +.|+++.
T Consensus       491 ~~~~~~~  497 (537)
T 3fp2_A          491 LARTMDE  497 (537)
T ss_dssp             HC--CHH
T ss_pred             hCCCcHH
Confidence            5555433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.4e-22  Score=202.65  Aligned_cols=346  Identities=10%  Similarity=0.019  Sum_probs=242.4

Q ss_pred             CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHH
Q 006627          239 SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVD  318 (638)
Q Consensus       239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  318 (638)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            34567778888888888888888888887652 2345566666666666677777776666666554 223444555555


Q ss_pred             HHHhcCChHHHHHHHhcCCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          319 MYGKCREIRSARTLFDGMKSKDV------MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       319 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      .|...|++++|...|+++.+.++      ..+..++..+...                       .+..+...+...|++
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~  159 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY  159 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence            55555555555555555433211      2222222221100                       111223346677888


Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDME  469 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~  469 (638)
                      +.|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.   ..+..+|..+..++...|++++|+..++++.
T Consensus       160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888887765 5667778888888888888888888888765   3467788888888888889999999888888


Q ss_pred             HcCCCCcHHHHHHH------------HHHHhccCcHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHHhcCChHHH
Q 006627          470 RSGVKPNGITFIGL------------LNACSHAGLVTEGKSVFDKMVHGLGLVPK-----IEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       470 ~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A  532 (638)
                      +.. +.+...+..+            ...|...|++++|..+++++.+.   .|+     ...+..++.++.+.|++++|
T Consensus       239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A  314 (450)
T 2y4t_A          239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA  314 (450)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence            753 3334444444            78888999999999999999864   343     34788888999999999999


Q ss_pred             HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH------------HHHhcC-----
Q 006627          533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN------------IYAVAN-----  593 (638)
Q Consensus       533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----  593 (638)
                      .+.++++ ...| +..+|..+..++...|++++|...++++++++|+++..+..++.            .|...|     
T Consensus       315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~  394 (450)
T 2y4t_A          315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA  394 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence            9999987 4444 67889999999999999999999999999999999999999984            455556     


Q ss_pred             CHHHHHHHHHHH-hhcCCcCCC
Q 006627          594 RWNDVAGVRRVM-KEIRVKKEP  614 (638)
Q Consensus       594 ~~~~A~~~~~~~-~~~~~~~~~  614 (638)
                      +.+++.+.++++ .+..+...|
T Consensus       395 ~~~~~~~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          395 KKQEIIKAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             CTTHHHHHHHHHHHHSCGGGCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCC
Confidence            566778777763 444444333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=2e-21  Score=203.35  Aligned_cols=477  Identities=9%  Similarity=-0.044  Sum_probs=312.4

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMY  116 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  116 (638)
                      ..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.+ +.+..++..+..++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            566778888889999999999999998764 4566788888888889999999999999988876 56778888888888


Q ss_pred             hcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHH
Q 006627          117 SECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHA  196 (638)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  196 (638)
                      ...|++++|...|+.+. .+....+..+..+...+....|...++.+....  |+..                       
T Consensus       104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~-----------------------  157 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG-----------------------  157 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc-----------------------
Confidence            88888888888886432 222222223444445555567777777765421  1100                       


Q ss_pred             HHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcc---cHHHHHHHHHh--------CCChHHHHHHHHH
Q 006627          197 CVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVV---SWTVMISGYIR--------CNEINEGVRLFAE  265 (638)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~  265 (638)
                            .    ........+..+....+.+.+...+......+..   ....+...+..        .|++++|..++++
T Consensus       158 ------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~  227 (537)
T 3fp2_A          158 ------S----QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS  227 (537)
T ss_dssp             -----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------c----cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence                  0    0001122333444555666666666555543332   22222222221        2467777777777


Q ss_pred             HHHcCccCChH-hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC--CCCch
Q 006627          266 MIEENVFPSEI-TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK--SKDVM  342 (638)
Q Consensus       266 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~  342 (638)
                      +.+.  .|+.. .+..+                            ..++..+...+...|++++|...|++..  .|+..
T Consensus       228 ~l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~  277 (537)
T 3fp2_A          228 LLSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN  277 (537)
T ss_dssp             HHC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence            7654  23321 11111                            1123455566777788888888887765  34456


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA  422 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  422 (638)
                      .+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            77888889999999999999999988754 3456788888899999999999999999999876 667788999999999


Q ss_pred             hcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHhcc----
Q 006627          423 KCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVK-P----NGITFIGLLNACSHA----  490 (638)
Q Consensus       423 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~----  490 (638)
                      ..|++++|...++++.   ..+...+..+...+...|++++|...++++.+.... +    ....+.....++...    
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  435 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD  435 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999998876   346678999999999999999999999998865311 1    112244555677777    


Q ss_pred             ------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHH
Q 006627          491 ------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       491 ------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~  563 (638)
                            |++++|...++++.+.  .+.+...+..+..++.+.|++++|.+.++++ ...|+.........       +..
T Consensus       436 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~  506 (537)
T 3fp2_A          436 PTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT-------FAE  506 (537)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH-------HHH
T ss_pred             chhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh-------HHH
Confidence                  9999999999999873  3456788999999999999999999999988 44454333222111       222


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      +....... ..+|.....+..+...|.+.|
T Consensus       507 ~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~  535 (537)
T 3fp2_A          507 AAKIQKRL-RADPIISAKMELTLARYRAKG  535 (537)
T ss_dssp             HHHHHHHH-HTC------------------
T ss_pred             HHHHHHhc-cccHHHHHHHhhHHHHHhhcc
Confidence            33333332 455665555555555554443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=2.3e-21  Score=198.00  Aligned_cols=364  Identities=10%  Similarity=-0.025  Sum_probs=255.3

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIE  284 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  284 (638)
                      +...+..+...+.+.|++++|...|+.+.+   .+..+|..+..++...|++++|.+.|+++.+.+ +.+...+..+...
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            778899999999999999999999998764   456789999999999999999999999998864 3356788899999


Q ss_pred             hcccCChhhHHHHHHHHHHhcCCCch---hhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006627          285 CGFVGGLQLGKWLHAYILRNGFEFSL---AMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAF  361 (638)
Q Consensus       285 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  361 (638)
                      +...|+++.|...++.+.+.. +.+.   ..+..+...+...                   .+..+...+...|++++|+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence            999999999999999998754 2233   4555554442211                   1223344455566666666


Q ss_pred             HHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--C
Q 006627          362 ELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--Y  439 (638)
Q Consensus       362 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~  439 (638)
                      ..|+++.... +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+++.  .
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6666665432 2344555566666666666666666666666543 4455666666666666666666666666554  2


Q ss_pred             C-CchhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCcHHHHHHHHH
Q 006627          440 R-DICMWNAM------------MAGYGMHGCGEEALIFFVDMERSGVKPN-----GITFIGLLNACSHAGLVTEGKSVFD  501 (638)
Q Consensus       440 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~  501 (638)
                      | +...+..+            ...+...|++++|...++++.+.  .|+     ...+..+..++.+.|++++|...++
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            2 22333333            67788888888888888888875  343     3467778888888899999999888


Q ss_pred             HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHH------------HhhcC-----ChH
Q 006627          502 KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAA------------SKLHK-----NPS  562 (638)
Q Consensus       502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~  562 (638)
                      ++.+.  .+.+...+..++.++...|++++|.+.++++ ...|+ ...+..+..+            |...|     +.+
T Consensus       320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            88763  3446778888888888889999999988887 55664 4555555522            33334     567


Q ss_pred             HHHHHHHH-HhccCCCCcc----------hHHHHHHHHHhcCCHHHH
Q 006627          563 MGEIAATQ-ILEIEPQNYG----------YNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       563 ~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A  598 (638)
                      ++.+.+++ +++..|++..          .+..++.+|...+|.+++
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            88888987 7888887532          344555555555555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.88  E-value=1.1e-17  Score=179.44  Aligned_cols=534  Identities=11%  Similarity=0.036  Sum_probs=370.6

Q ss_pred             cchHhhhhHHHhhhhcCChhHHHHhhhhh------------------------------------------hcHHHHHHH
Q 006627            8 LNLEQTRQCHAHIIKTHFKFSYTNIINPL------------------------------------------TRYNSLVTS   45 (638)
Q Consensus         8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------------~~~~~ll~~   45 (638)
                      +|.+++...|.++++.|.+.+..++-.+-                                          ......|..
T Consensus       723 ~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~  802 (1630)
T 1xi4_A          723 QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEI  802 (1630)
T ss_pred             CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHH
Confidence            49999999999999999998888876553                                          111233444


Q ss_pred             HHhCCCchhHHHHHHHHHHCCCCCC-----------cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627           46 YIKNNKPSSALNIYAFMRKNGSEVD-----------NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ  114 (638)
Q Consensus        46 ~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  114 (638)
                      |+..-++..+-.+...+..-++..|           ......|+..+-++++.......++.....| ..++.++|+|..
T Consensus       803 yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalak  881 (1630)
T 1xi4_A          803 YVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAK  881 (1630)
T ss_pred             HHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence            4444444333333333332221111           1112333334444455555556677777777 778999999999


Q ss_pred             hhhcCCChhHHHHHhccCC------------CCCcc----------hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCH
Q 006627          115 MYSECGSLVSARYLFDEMP------------NRDVV----------SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSE  172 (638)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~------------~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  172 (638)
                      .|..+++-.  ++.+.+=.            ++|+.          .-..||....+++-+..-.+.+-+      +-|.
T Consensus       882 iyid~n~np--e~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~------r~d~  953 (1630)
T 1xi4_A          882 IYIDSNNNP--ERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR------RKDP  953 (1630)
T ss_pred             HHhccCCCH--HHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH------hcCH
Confidence            999876433  23332211            11211          112233333333333322111111      1244


Q ss_pred             hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-CC-----cccHHHH
Q 006627          173 VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-NS-----VVSWTVM  246 (638)
Q Consensus       173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~l  246 (638)
                      ..|..++.     .+-+--+.+.++......+...++.-....+..|...|.+.+|.++++++.- ++     ...-+.+
T Consensus       954 ~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A          954 ELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred             HHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence            44544442     1112234555565555555555777778888999999999999999998873 22     2445667


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHH-HHhcCC
Q 006627          247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDM-YGKCRE  325 (638)
Q Consensus       247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  325 (638)
                      +.+..+. +..+..++....... .      ...+...+...|.+++|..+|+...         .+...+.. +...++
T Consensus      1029 i~tAIka-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~n 1091 (1630)
T 1xi4_A         1029 ILTAIKA-DRTRVMEYINRLDNY-D------APDIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGN 1091 (1630)
T ss_pred             HHHHHHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhh
Confidence            7777776 556777766665421 1      3336677888999999999999852         11121222 337889


Q ss_pred             hHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627          326 IRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ  405 (638)
Q Consensus       326 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  405 (638)
                      +++|.++.+++.  ++.+|..+..++...|++++|++.|.+.      -|...|..++.+|.+.|++++|.+++...++.
T Consensus      1092 ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1092 LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999874  4678899999999999999999999653      46778888999999999999999999988876


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627          406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN  485 (638)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  485 (638)
                      .  +++.+.+.++.+|++.+++++...+.   ..++...|..+...|...|++++|..+|...         ..|..+..
T Consensus      1164 ~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A         1164 A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred             c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence            5  44444556999999999999755554   3556677778999999999999999999984         37999999


Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHH
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      ++.+.|++++|.+.+++..       +..+|..+..++...|++..|.......  ..++..+..++..|...|.+++|+
T Consensus      1230 tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1230 TLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999998873       4578888999999999999999987653  445667778999999999999999


Q ss_pred             HHHHHHhccCCCCcchHHHHHHHHHhc--CCHHHHHHHHH
Q 006627          566 IAATQILEIEPQNYGYNVLMSNIYAVA--NRWNDVAGVRR  603 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~  603 (638)
                      .++++++.++|.+...+..|+.+|.+-  ++.-++.++|.
T Consensus      1301 ~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1301 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999998888887765  35555555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=2.3e-19  Score=177.00  Aligned_cols=307  Identities=10%  Similarity=-0.026  Sum_probs=151.7

Q ss_pred             hHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHH
Q 006627          275 EITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAY  351 (638)
Q Consensus       275 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~  351 (638)
                      ...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+   .+...+..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3455566666777777777777777776654 33456666677777777777777777766542   2445666666677


Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCC----ChhhHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCcccHHH
Q 006627          352 AQAHCIDKAFELFIHMKVSKVRP----NEVTMVGL------------LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKT  415 (638)
Q Consensus       352 ~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (638)
                      ...|++++|...+++....  .|    +...+..+            ...+...|+++.|...++.+.+.. +.+...+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            7777777777777766553  33    22222222            234445555555555555555443 33444444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH---------
Q 006627          416 ALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGL---------  483 (638)
Q Consensus       416 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l---------  483 (638)
                      .+...+...|++++|...++++.   ..+...+..+...+...|++++|...+++..+.. +.+...+..+         
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence            55555555555555555554433   1233444444455555555555555555544432 1122222111         


Q ss_pred             ---HHHHhccCcHHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627          484 ---LNACSHAGLVTEGKSVFDKMVHGLGLVPKI----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA  554 (638)
Q Consensus       484 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  554 (638)
                         ...+...|++++|...++++.+..  +.+.    ..+..+..++...|++++|.+.++++ ...| +..++..+...
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  315 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA  315 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence               233444444444444444444321  1111    11223334444444444444444443 1122 33444444444


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      +...|++++|...++++++++|+++..+..+..+
T Consensus       316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  349 (359)
T 3ieg_A          316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA  349 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            4444444444444444444444444444444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=9.8e-19  Score=172.48  Aligned_cols=297  Identities=11%  Similarity=0.039  Sum_probs=242.3

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL  385 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  385 (638)
                      ++..+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..++++.... +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            345567788889999999999999988753   356788888999999999999999999987753 3355678888889


Q ss_pred             HhccCchHHHHHHHHHHHHhCCC---CcccHHHHH------------HHHHHhcCCHHHHHHHHHcCC---CCCchhHHH
Q 006627          386 CTEAGALEMGKWLHTYIEKQGLE---VDVILKTAL------------VDMYAKCGDVNGAYRLFSEAI---YRDICMWNA  447 (638)
Q Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~  447 (638)
                      +...|+++.|...++.+.+.. +   .+...+..+            ...+...|++++|...++++.   ..+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            999999999999999998764 3   345555544            578899999999999998866   346778888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----------
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG----------  517 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----------  517 (638)
                      +...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.  .+.+...+.          
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence            9999999999999999999998764 556788999999999999999999999999863  222333332          


Q ss_pred             --HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          518 --CMVDLLGRAGLLDEAHEMIKSM-PLRPN-M----IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       518 --~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                        .++..+.+.|++++|.+.++++ ...|+ .    ..+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence              2366789999999999999887 33343 2    23455778888999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCC
Q 006627          590 AVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...|++++|.+.++++.+..+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHcCCHHHHHHHHHHHHhcCC
Confidence            999999999999998876554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.3e-18  Score=169.50  Aligned_cols=287  Identities=10%  Similarity=-0.023  Sum_probs=201.1

Q ss_pred             CCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHH
Q 006627          307 EFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLL  383 (638)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  383 (638)
                      +.+..++..+...+...|++++|..+|+++.+   .+...+..++..+...|++++|...++++.... +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            44555666677777777777777777776542   244556666677777778888888777776642 23455666666


Q ss_pred             HHHhccC-chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH
Q 006627          384 SLCTEAG-ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE  459 (638)
Q Consensus       384 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  459 (638)
                      ..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...+++..   ..+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            7777777 7777877777777654 4556677777777777888888887777655   224556666777777888888


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG-------LVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      +|...+++..+.. +.+...+..+...+...|++++|...++++.+...       .+.....+..+..++...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888888877653 44556777777788888888888888887765311       133356777778888888888888


Q ss_pred             HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCHH
Q 006627          533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY-AVANRWN  596 (638)
Q Consensus       533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  596 (638)
                      .+.++++ ...| +...+..+...+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            8888776 2233 4667777777888888888888888888888888888888888877 4555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.4e-18  Score=167.60  Aligned_cols=266  Identities=10%  Similarity=-0.022  Sum_probs=231.6

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHH
Q 006627          339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALV  418 (638)
Q Consensus       339 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  418 (638)
                      .+...+..+...+...|++++|+++++++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            366778888889999999999999999988763 3445566677788899999999999999999876 66788899999


Q ss_pred             HHHHhcC-CHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627          419 DMYAKCG-DVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT  494 (638)
Q Consensus       419 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  494 (638)
                      ..+...| ++++|...|++...   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 99999999998663   356789999999999999999999999999874 445577778999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHhhHHHHHHHHhhcCChHH
Q 006627          495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL----------RPNMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~  563 (638)
                      +|.+.++++.+  ..+.+...+..++..+...|++++|...++++ ..          +....++..+...+...|++++
T Consensus       177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999986  34556788999999999999999999999887 11          2346788999999999999999


Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      |...++++++..|+++..+..++.+|...|++++|.++++++.+..
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=1.3e-15  Score=163.75  Aligned_cols=506  Identities=11%  Similarity=0.017  Sum_probs=356.2

Q ss_pred             hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc-CchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627           37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL-MTHLGKEIHGFAIKNGLDGDAYVSNALIQM  115 (638)
Q Consensus        37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  115 (638)
                      ..-..|+...-++++..--...++.-...| ..++.++++|.+.|...+ +++....           -|..--..++.-
T Consensus       840 ~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~-----------~n~~yd~~~vgk  907 (1630)
T 1xi4_A          840 FSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLR-----------ENPYYDSRVVGK  907 (1630)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhh-----------ccCcccHHHHHH
Confidence            345566666777777777888888888888 568889999999998654 4433221           111111223344


Q ss_pred             hhcCCChhHHHHHhccCCC--------CCcchHHHHHHHHHhCCCch-----------HHHHHHHHhHHCC--CcCCHhh
Q 006627          116 YSECGSLVSARYLFDEMPN--------RDVVSWSTMIRGYHRGGLPE-----------EALEVMREMRFMD--IRPSEVA  174 (638)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~-----------~a~~~~~~m~~~~--~~p~~~t  174 (638)
                      ||...|+--|.-.+++-.-        ..-..|....+.+.+..+.+           -=.++.++-....  -.-++.-
T Consensus       908 yce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee  987 (1630)
T 1xi4_A          908 YCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEE  987 (1630)
T ss_pred             HHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHH
Confidence            4444444444444433110        01112223333333332221           1122333322211  1233444


Q ss_pred             HHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCC
Q 006627          175 MISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN  254 (638)
Q Consensus       175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g  254 (638)
                      ....+++|...|.+.++.++++...-.+.....+....+.++....+. +..+..+..+....-+   ...+...+...|
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence            466788888999999999999998844321112455666677666666 5566666666655322   455778888999


Q ss_pred             ChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHh
Q 006627          255 EINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFD  334 (638)
Q Consensus       255 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  334 (638)
                      .+++|..+|++..     -.....+.++.   ..+++++|.++.+..      -++.+|..+..++...|++++|.+.|.
T Consensus      1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred             CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999852     11122233322   677888888888754      457888999999999999999999997


Q ss_pred             cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHH
Q 006627          335 GMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILK  414 (638)
Q Consensus       335 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (638)
                      +.  .|...|..++..+.+.|++++|.+.|....+..  ++....+.+..+|++.++++....+.    +   .++...+
T Consensus      1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A         1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred             hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence            75  577888999999999999999999999876654  44434445888999999888644443    2   4555667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627          415 TALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT  494 (638)
Q Consensus       415 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  494 (638)
                      ..+...|...|++++|..+|...     ..|..+..++++.|++++|++.+++.      .+..+|..+..+|...|++.
T Consensus      1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence            78999999999999999999985     58999999999999999999999875      45588999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhh--cCChHHHHHHHHH
Q 006627          495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKL--HKNPSMGEIAATQ  570 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~--~~~~~~A~~~~~~  570 (638)
                      .|......+      ..++..+..++..|.+.|.+++|+++++.. +..|. ...|..+...+.+  -++..++.+.|..
T Consensus      1268 LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1268 LAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             HHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            998876543      345667789999999999999999999877 55553 4555555555554  4577888888888


Q ss_pred             HhccCC-----CCcchHHHHHHHHHhcCCHHHHHH
Q 006627          571 ILEIEP-----QNYGYNVLMSNIYAVANRWNDVAG  600 (638)
Q Consensus       571 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~  600 (638)
                      -..+.|     +++..|..++.+|.+.|+|+.|..
T Consensus      1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            888777     788899999999999999999984

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=2.8e-18  Score=169.98  Aligned_cols=281  Identities=9%  Similarity=-0.086  Sum_probs=223.1

Q ss_pred             HHhcCChHHHHH-HHhcCCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627          320 YGKCREIRSART-LFDGMKSK-------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA  391 (638)
Q Consensus       320 ~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  391 (638)
                      +...|++++|.. .+++....       +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344578888888 77765421       34567788889999999999999999988763 4456677888888999999


Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHH---------------HHHHHH
Q 006627          392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNA---------------MMAGYG  453 (638)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~  453 (638)
                      ++.|...++.+.+.. +.+..++..+...|...|++++|.+.++++...   +...+..               .+..+.
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            999999999998876 667888888999999999999999999876522   2222221               133344


Q ss_pred             hcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627          454 MHGCGEEALIFFVDMERSGVKP--NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE  531 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  531 (638)
                      ..|++++|...++++.+.. +.  +..++..+...+...|++++|...++++.+.  .+.+...+..++.++...|++++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence            8899999999999999874 22  4788999999999999999999999999873  34457889999999999999999


Q ss_pred             HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCHHHH
Q 006627          532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-----------YGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A  598 (638)
                      |.+.++++ ...| +..++..+...+...|++++|...+++++++.|++           +..|..++.+|...|++++|
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999988 3344 57889999999999999999999999999999987           78999999999999999999


Q ss_pred             HHHHHHH
Q 006627          599 AGVRRVM  605 (638)
Q Consensus       599 ~~~~~~~  605 (638)
                      ..++++.
T Consensus       350 ~~~~~~~  356 (368)
T 1fch_A          350 GAADARD  356 (368)
T ss_dssp             HHHHTTC
T ss_pred             HHhHHHH
Confidence            9987744

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=5.3e-16  Score=161.33  Aligned_cols=213  Identities=8%  Similarity=-0.051  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHHHHcCCC---C-CchhHHHHHHHHHh
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAK-------CGDVN-------GAYRLFSEAIY---R-DICMWNAMMAGYGM  454 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~  454 (638)
                      ..+..++++..... +.+..+|..++..+.+       .|+++       +|..+|++...   | +...|..++..+..
T Consensus       255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            36777888888764 6678888888888875       79987       89999998763   3 56788999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCc-H-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HHhcCChHH
Q 006627          455 HGCGEEALIFFVDMERSGVKPN-G-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-LGRAGLLDE  531 (638)
Q Consensus       455 ~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~  531 (638)
                      .|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|.++|++..+.  .+.+...+...+.. +...|+.++
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence            99999999999999985  554 3 47888888888999999999999999863  22233333332222 346899999


Q ss_pred             HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG----YNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      |..+|++. ...| ++..|..++......|+.+.|..+++++++..|.++.    .|..++......|+.+.+..+++++
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 3345 5788999999999999999999999999998877665    7778888889999999999999988


Q ss_pred             hhcCC
Q 006627          606 KEIRV  610 (638)
Q Consensus       606 ~~~~~  610 (638)
                      .+.-+
T Consensus       490 ~~~~p  494 (530)
T 2ooe_A          490 FTAFR  494 (530)
T ss_dssp             HHHTH
T ss_pred             HHHCc
Confidence            76544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=3e-16  Score=161.43  Aligned_cols=378  Identities=11%  Similarity=-0.001  Sum_probs=273.8

Q ss_pred             chhHHHHHHHHHHh----cCChHHHHHHHhccCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCccCChHhH
Q 006627          208 GVAIATALIDMYSK----CGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIR----CNEINEGVRLFAEMIEENVFPSEITI  278 (638)
Q Consensus       208 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~  278 (638)
                      ++.....+...|..    .++++.|...|+...+ .+...+..+...|..    .+++++|.+.|++..+.|   +...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44555555566655    6677777777765543 344556666666666    677777777777776654   44455


Q ss_pred             HHHHHHhcc----cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHh----cCChHHHHHHHhcCCC-CCchhHHHHHH
Q 006627          279 LSLIIECGF----VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGK----CREIRSARTLFDGMKS-KDVMIWNAVIS  349 (638)
Q Consensus       279 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~  349 (638)
                      ..+-..+..    .++.+.|...|+...+.|   +...+..+...|..    .+++++|...|++..+ .++..+..+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555555555    567777777777776665   44556666667766    6788888888877653 35667777777


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627          350 AYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMY  421 (638)
Q Consensus       350 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (638)
                      .|..    .+++++|.+.|++..+.|   +...+..+...+..    .++.+.|..+++...+.+   +...+..+...|
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            7777    788999999998887754   44556666666654    788999999998888754   345666777777


Q ss_pred             Hh----cCCHHHHHHHHHcCCC-CCchhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627          422 AK----CGDVNGAYRLFSEAIY-RDICMWNAMMAGYGMH-----GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG  491 (638)
Q Consensus       422 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~  491 (638)
                      ..    .+++++|..+|++... .+...+..+...|...     +++++|+..+++..+.|   +...+..+...|...|
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence            77    8899999999988664 3667777888888877     89999999999998875   3455666777776655


Q ss_pred             ---cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCC
Q 006627          492 ---LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKN  560 (638)
Q Consensus       492 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~  560 (638)
                         ++++|.++|++..+.    .++..+..+...|..    .+++++|.+++++.-...++..+..+...|..    .++
T Consensus       343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d  418 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD  418 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence               889999999999873    456788888888888    89999999999988323467788888888887    789


Q ss_pred             hHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCHHH--HHHHHHH
Q 006627          561 PSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANRWND--VAGVRRV  604 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~--A~~~~~~  604 (638)
                      +++|...++++.+.+|+   ++.....++.++....+..+  |.+++++
T Consensus       419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~  467 (490)
T 2xm6_A          419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEK  467 (490)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence            99999999999999854   77777778777664332222  4444444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.79  E-value=5.3e-18  Score=167.74  Aligned_cols=260  Identities=8%  Similarity=-0.089  Sum_probs=215.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      +...+..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+++.|...++++.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44568888889999999999999999987753 4466788888889999999999999999998876 667888999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC-------------chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHH
Q 006627          420 MYAKCGDVNGAYRLFSEAIYRD-------------ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--NGITFIGLL  484 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~  484 (638)
                      +|...|++++|...++++...+             ...+..+...+...|++++|+..++++.+.. +.  +..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence            9999999999999998876321             1233345788899999999999999999874 33  578899999


Q ss_pred             HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627          485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  562 (638)
                      ..+...|++++|.+.++++.+.  .+.+...+..++.++...|++++|.+.++++ ...| +..++..+...+...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999873  4556788999999999999999999999988 4445 4788999999999999999


Q ss_pred             HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627          563 MGEIAATQILEIEPQ------------NYGYNVLMSNIYAVANRWNDVAGVRRV  604 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  604 (638)
                      +|...+++++++.|+            +...+..++.++...|+.+.|.++.++
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999999887            367899999999999999999988774

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.8e-17  Score=161.16  Aligned_cols=259  Identities=8%  Similarity=-0.074  Sum_probs=192.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA  422 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  422 (638)
                      .+..+...+...|++++|..+|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            34455555666666666666666655432 2244455555566666666666666666666654 445556666666666


Q ss_pred             hcCCHHHHHHHHHcCCCC---CchhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627          423 KCGDVNGAYRLFSEAIYR---DICMWNAM--------------MA-GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL  484 (638)
Q Consensus       423 ~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~  484 (638)
                      ..|++++|.+.++++...   +...+..+              .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  179 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG  179 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            666666666666654421   22222222              22 3667789999999999999875 55778899999


Q ss_pred             HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627          485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  562 (638)
                      ..+...|++++|.+.++++.+.  .+.+...+..++.++...|++++|.+.++++ ...| +..++..+...+...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence            9999999999999999999873  3456788899999999999999999999987 3344 5788899999999999999


Q ss_pred             HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          563 MGEIAATQILEIEPQ------------NYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +|...++++++..|+            ++..+..++.+|...|++++|..++++..
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999            78899999999999999999999987554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.77  E-value=2.5e-15  Score=154.54  Aligned_cols=352  Identities=13%  Similarity=0.005  Sum_probs=290.8

Q ss_pred             CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc----cCChhhHHHHHHHHHHhcCCCc
Q 006627          238 NSVVSWTVMISGYIR----CNEINEGVRLFAEMIEENVFPSEITILSLIIECGF----VGGLQLGKWLHAYILRNGFEFS  309 (638)
Q Consensus       238 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  309 (638)
                      .+...+..+...|..    .+++++|...|++..+.|   +...+..+-..+..    .++.+.|...|+...+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            456667777777877    899999999999998864   55667777777777    899999999999998876   5


Q ss_pred             hhhHHHHHHHHHh----cCChHHHHHHHhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627          310 LAMANALVDMYGK----CREIRSARTLFDGMKSK-DVMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMV  380 (638)
Q Consensus       310 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~  380 (638)
                      ...+..|...|..    .+++++|...|++..+. ++..+..+...|..    .+++++|++.|++..+.|   +...+.
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~  187 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN  187 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667778888888    88999999999987644 56678888888887    789999999999988765   566777


Q ss_pred             HHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHHcCCC-CCchhHHHHHHH
Q 006627          381 GLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK----CGDVNGAYRLFSEAIY-RDICMWNAMMAG  451 (638)
Q Consensus       381 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~  451 (638)
                      .+-..+..    .++.+.|...++...+.+   +...+..+...|..    .+++++|..+|++... .+...+..+...
T Consensus       188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  264 (490)
T 2xm6_A          188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777776    899999999999998865   45667778888876    8899999999998664 466777778888


Q ss_pred             HHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-----CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627          452 YGM----HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA-----GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL  522 (638)
Q Consensus       452 ~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  522 (638)
                      +..    .+++++|+..|++..+.|   +...+..+...|...     +++++|...+++..+. +   +...+..+...
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~  337 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI  337 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence            887    899999999999998765   345666777777766     8999999999999873 3   45677778888


Q ss_pred             HHhcC---ChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----
Q 006627          523 LGRAG---LLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----  591 (638)
Q Consensus       523 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----  591 (638)
                      |...|   +.++|.+++++.-...++..+..+...+..    .+++++|...++++.+..  ++.++..|+.+|..    
T Consensus       338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence            87766   889999999988333578888889999988    799999999999999864  57899999999999    


Q ss_pred             cCCHHHHHHHHHHHhhcCC
Q 006627          592 ANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       592 ~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+++++|...|++..+.++
T Consensus       416 ~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          416 ERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHCCC
Confidence            9999999999999987764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=2.3e-16  Score=149.37  Aligned_cols=272  Identities=8%  Similarity=-0.047  Sum_probs=216.4

Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          317 VDMYGKCREIRSARTLFDGMKSKDV----MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       317 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      ++.....|+++.|+..++.....++    .....+.++|...|+++.|+..++.    .-.|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            3445668999999999988765443    2345577899999999999987654    2356777888888899999999


Q ss_pred             HHHHHHHHHHHHhCC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006627          393 EMGKWLHTYIEKQGL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERS  471 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~  471 (638)
                      +.|.+.++.+...+. |.+...+..+...+...|++++|++.+++  ..+...+..++..+.+.|++++|...++++.+.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            999999999988764 44566777788999999999999999998  567889999999999999999999999999987


Q ss_pred             CCCCcHHHH---HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHh
Q 006627          472 GVKPNGITF---IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMI  546 (638)
Q Consensus       472 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  546 (638)
                      .  |+....   ..++..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|.+.++++ ...| ++.
T Consensus       160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            4  553211   22334445669999999999999984  5667889999999999999999999999997 4455 578


Q ss_pred             hHHHHHHHHhhcCChHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          547 VWGALLAASKLHKNPSM-GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      ++..++..+...|+.++ +...++++++++|+++.+..    ...+.+.++++..-|
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            89999999999999875 67899999999999876554    345555555554433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.9e-17  Score=158.36  Aligned_cols=347  Identities=11%  Similarity=0.028  Sum_probs=149.4

Q ss_pred             hcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH
Q 006627          221 KCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY  300 (638)
Q Consensus       221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  300 (638)
                      +.|++++|.++++++..|+  +|..++.++.+.|++++|++.|.+      .+|..+|..++.++...|+++++..+++.
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5677888888888885553  788888888888888888888854      25777888888888888888888887776


Q ss_pred             HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627          301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV  380 (638)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  380 (638)
                      .++.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            6663  34467778888888888888888877753   56668888888888888888888888865         3678


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHH
Q 006627          381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEE  460 (638)
Q Consensus       381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  460 (638)
                      .+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence            8888888888888888888877      367788888888888888888876666544 444445567888888899999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC------ChhHHHHHHHHHHhcCChHHHHH
Q 006627          461 ALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP------KIEHYGCMVDLLGRAGLLDEAHE  534 (638)
Q Consensus       461 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~  534 (638)
                      |+.+++...... +.-...|+-+.-+|++- ++++..+.++...++..++|      +...|..++..|...++++.|..
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            998888877543 33345566665555543 23333333333333334555      45778889999999999999888


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627          535 MIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       535 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      .+-+-+  |+..-...+.....+-.+.+--.+...-.++..|.   ....|..++...=|...+.+.++
T Consensus       304 tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r~v~~~~  367 (449)
T 1b89_A          304 TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTRAVNYFS  367 (449)
T ss_dssp             HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred             HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHHHHHHHH
Confidence            765542  22222222233334444444444444444433332   34444444444444444444444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=1.7e-16  Score=153.04  Aligned_cols=283  Identities=13%  Similarity=0.058  Sum_probs=87.3

Q ss_pred             cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHH
Q 006627          118 ECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHAC  197 (638)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  197 (638)
                      +.|++++|.+.++++..|  .+|..|+.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|...+..
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            445566666666665433  3566666666666666666666643      23444555555555555666555555544


Q ss_pred             HHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHh
Q 006627          198 VVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEIT  277 (638)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  277 (638)
                      ..+.  .+  ++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|...|..+         ..
T Consensus        87 ark~--~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n  150 (449)
T 1b89_A           87 ARKK--AR--ESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN  150 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred             HHHh--Cc--cchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence            4442  11  345556666666666666666665542   55556666666666666666666666654         24


Q ss_pred             HHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 006627          278 ILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCI  357 (638)
Q Consensus       278 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~  357 (638)
                      |..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence            555555555555555555555554      245555666666666666666655554433 2333334455666666666


Q ss_pred             HHHHHHHHHHHHcCcCCChhhHHHHHHHHhc--cCchHHHHHHHHHHHHhCCCC------cccHHHHHHHHHHhcCCHHH
Q 006627          358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTE--AGALEMGKWLHTYIEKQGLEV------DVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~  429 (638)
                      ++|+.+++...... +.-...|+-+--++++  .++..+..+.|.  .+.+++|      +...|..+.-.|...++++.
T Consensus       224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            66666666544322 2222233333333332  222222222222  1112222      34455556666666666666


Q ss_pred             HHHHH
Q 006627          430 AYRLF  434 (638)
Q Consensus       430 A~~~~  434 (638)
                      |...+
T Consensus       301 A~~tm  305 (449)
T 1b89_A          301 AIITM  305 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=4.8e-17  Score=161.01  Aligned_cols=278  Identities=13%  Similarity=0.015  Sum_probs=205.1

Q ss_pred             CChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH-HHHHHHHcCc-CC--ChhhHHHHHHHHhccCchHHHHHHH
Q 006627          324 REIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFE-LFIHMKVSKV-RP--NEVTMVGLLSLCTEAGALEMGKWLH  399 (638)
Q Consensus       324 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~  399 (638)
                      +.++.+...|+.+...+..       ++...|++++|+. .+++...... .|  +...+..+...+...|+++.|...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~   87 (368)
T 1fch_A           15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF   87 (368)
T ss_dssp             --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3444455555555443322       3345688999998 8876543221 11  3456778888999999999999999


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627          400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN  476 (638)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  476 (638)
                      +.+.+.. +.+..++..+..++...|++++|...++++.   ..+..++..+..++...|++++|...++++.+.. +.+
T Consensus        88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  165 (368)
T 1fch_A           88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAY  165 (368)
T ss_dssp             HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTT
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence            9999876 6778899999999999999999999999766   3467889999999999999999999999999864 222


Q ss_pred             HHHHHH---------------HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627          477 GITFIG---------------LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P  540 (638)
Q Consensus       477 ~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  540 (638)
                      ...+..               .+..+...|++++|...++++.+.....++...+..++.++.+.|++++|...++++ .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  245 (368)
T 1fch_A          166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  245 (368)
T ss_dssp             GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222221               233344899999999999999874222225788999999999999999999999987 3


Q ss_pred             CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..| +..++..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|...++++.+..+
T Consensus       246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            344 5788999999999999999999999999999999999999999999999999999999999976544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=2.1e-15  Score=156.86  Aligned_cols=216  Identities=8%  Similarity=0.016  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHcCcCCChhhHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627          358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTE-------AGALE-------MGKWLHTYIEKQGLEVDVILKTALVDMYAK  423 (638)
Q Consensus       358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  423 (638)
                      +++..+|++.... .+-+...|......+.+       .|+++       .|..++++..+.-.|.+...+..++..+.+
T Consensus       255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            4777888887764 23456677766666654       68877       889999988863335568888999999999


Q ss_pred             cCCHHHHHHHHHcCC--CC-Cc-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHH
Q 006627          424 CGDVNGAYRLFSEAI--YR-DI-CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSHAGLVTEGKS  498 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~  498 (638)
                      .|++++|..+|+++.  .| +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|++++|..
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence            999999999999866  33 32 478888888889999999999999998752 2233344333333 335899999999


Q ss_pred             HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRPN--MIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      +|++..+.  .+.+...|..++..+.+.|+.++|..+|+++ .   ..|+  ...|...+......|+.+.+..+.+++.
T Consensus       413 ~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          413 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999874  3446788999999999999999999999988 2   2332  3478888888889999999999999999


Q ss_pred             ccCCC
Q 006627          573 EIEPQ  577 (638)
Q Consensus       573 ~~~p~  577 (638)
                      +..|+
T Consensus       491 ~~~p~  495 (530)
T 2ooe_A          491 TAFRE  495 (530)
T ss_dssp             HHTHH
T ss_pred             HHCch
Confidence            99985

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=3.8e-16  Score=160.28  Aligned_cols=386  Identities=9%  Similarity=-0.106  Sum_probs=190.1

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQ-----------N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEEN-----  270 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----  270 (638)
                      ....|+.|...+...|++++|++.|++..+           + ...+|+.+...|...|++++|...+++..+..     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            345677777777777777777777665421           1 23456666677777777777777766654320     


Q ss_pred             -ccC-ChHhHHHHHHHhcc--cCChhhHHHHHHHHHHhcCCCchhhHHHHHHH---HHhcCChHHHHHHHhcCC---CCC
Q 006627          271 -VFP-SEITILSLIIECGF--VGGLQLGKWLHAYILRNGFEFSLAMANALVDM---YGKCREIRSARTLFDGMK---SKD  340 (638)
Q Consensus       271 -~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~  340 (638)
                       ..+ ...++.....++..  .+++++|...|+...+.. |-++..+..+...   +...++.++|++.+++..   ..+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence             011 12233333222222  234555555555555443 1122222222222   222344444444443322   112


Q ss_pred             chhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627          341 VMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA  416 (638)
Q Consensus       341 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (638)
                      ...+..+...+..    .+++++|.+.+++..... +.+...+..+...+...|+++.|...++...+.. |.+..++..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence            2233333222222    233444444444443321 2223334444444444555555555555444433 233333333


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG  496 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a  496 (638)
                      +..+|...+....+..      ...      ........+.++.|...+++..+.. +.+..++..+...+...|++++|
T Consensus       287 lg~~y~~~~~~~~~~~------~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A  353 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLR------ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA  353 (472)
T ss_dssp             HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhhHH------HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence            3333322111000000      000      0000011234577888888888764 44456788889999999999999


Q ss_pred             HHHHHHHhhhcCCCCCh--hHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          497 KSVFDKMVHGLGLVPKI--EHYGCMVD-LLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       497 ~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      .+.|+++.+. ...|..  ..+..+.. .+...|+.++|++.+++. .+.|+......         ....+..++++++
T Consensus       354 ~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l  423 (472)
T 4g1t_A          354 EYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL  423 (472)
T ss_dssp             HHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence            9999998863 222221  12333333 235679999999999887 56666433322         2345677888899


Q ss_pred             ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeEE
Q 006627          573 EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSV  619 (638)
Q Consensus       573 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  619 (638)
                      +.+|+++.++..||.+|...|++++|++.|++..+.+.......+||
T Consensus       424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            99999999999999999999999999999999988776555555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=7.5e-17  Score=152.76  Aligned_cols=248  Identities=8%  Similarity=-0.033  Sum_probs=203.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      ++-....|++..|+..++....  ..|+.  .....+.+++...|+++.|...++.   . -+|+..++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence            4456678999999999887643  34443  3445677899999999999876654   2 3677888899999999999


Q ss_pred             CHHHHHHHHHcCC----CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 006627          426 DVNGAYRLFSEAI----YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF  500 (638)
Q Consensus       426 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  500 (638)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999864    24 556777788999999999999999987      567788999999999999999999999


Q ss_pred             HHHhhhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627          501 DKMVHGLGLVPKIEHY---GCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  575 (638)
                      +++.+.   .|+....   ..++..+...|++++|..+|+++  ..+.++..+..+..++...|++++|+..++++++++
T Consensus       154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999874   3553211   22334455669999999999998  334578889999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCHHH-HHHHHHHHhhcCC
Q 006627          576 PQNYGYNVLMSNIYAVANRWND-VAGVRRVMKEIRV  610 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~  610 (638)
                      |+++.++..++.++...|++++ +.++++++.+..+
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999986 5789998876554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=8.1e-17  Score=159.19  Aligned_cols=233  Identities=12%  Similarity=0.036  Sum_probs=197.4

Q ss_pred             ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHH
Q 006627          375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAG  451 (638)
Q Consensus       375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~  451 (638)
                      +...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.   ..+...+..+..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34557788889999999999999999999886 6788899999999999999999999999876   3467899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcH-HH----------HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNG-IT----------FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      +...|++++|+..++++.+.  .|+. ..          +..+...+...|++++|.++++++.+.....++...+..++
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999886  3432 22          23457788999999999999999997532222678899999


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  598 (638)
                      .++.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999988 3344 5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 006627          599 AGVRRVMKEIRV  610 (638)
Q Consensus       599 ~~~~~~~~~~~~  610 (638)
                      ...++++.+..+
T Consensus       301 ~~~~~~al~~~~  312 (365)
T 4eqf_A          301 VSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc
Confidence            999999976543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.70  E-value=4e-16  Score=151.53  Aligned_cols=154  Identities=10%  Similarity=0.062  Sum_probs=91.8

Q ss_pred             HHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627          421 YAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       421 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  497 (638)
                      +...|++++|...++++.   ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            444455555555555443   2234455555666666666666666666666543 334556666666666666777777


Q ss_pred             HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHhhHHHHHHHHhhcCChHH
Q 006627          498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-------------NMIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~  563 (638)
                      ..++++.+.  .+.+...+..+..++.+.|++++|.+.++++ ...|             +...|..+...+...|++++
T Consensus       227 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          227 DAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            666666552  2334556666666666667777776666655 1122             24566666677777777777


Q ss_pred             HHHHHHHHhccCCC
Q 006627          564 GEIAATQILEIEPQ  577 (638)
Q Consensus       564 A~~~~~~~~~~~p~  577 (638)
                      |...++++++..|+
T Consensus       305 A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          305 VELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHhcch
Confidence            77777766655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=7.7e-16  Score=139.24  Aligned_cols=196  Identities=14%  Similarity=-0.012  Sum_probs=155.1

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL  484 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~  484 (638)
                      |++...+..+...+.+.|++++|...|++...   .+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            56677788888888889999999988887653   356778888888999999999999999998874 44567888888


Q ss_pred             HHHhcc-----------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627          485 NACSHA-----------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL  552 (638)
Q Consensus       485 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~  552 (638)
                      .++...           |++++|...+++..+.  .+.+...+..+..++...|++++|+..++++ ....++..+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            899988           9999999999999863  3345678888999999999999999999987 2227788999999


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      .++...|++++|+..++++++++|+++..+..++.++...|++++|+..+++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=1.6e-14  Score=148.07  Aligned_cols=384  Identities=11%  Similarity=-0.045  Sum_probs=233.1

Q ss_pred             CCHhhHHHHHHHhcccCchHHHHHHHHHHHHhc-----cC-CCCchhHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 006627          170 PSEVAMISMVSLFADVADVDLGKAIHACVVRNC-----KD-EKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ------  237 (638)
Q Consensus       170 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------  237 (638)
                      .....|+.+-..+...|+.++|...+....+..     .. .+....++..+...|...|++++|...+++..+      
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            334568888888899999999999998876641     11 111456788999999999999999998876642      


Q ss_pred             ----C-CcccHHHHHHHHHh--CCChHHHHHHHHHHHHcCccCChH-hHHHHHHH---hcccCChhhHHHHHHHHHHhcC
Q 006627          238 ----N-SVVSWTVMISGYIR--CNEINEGVRLFAEMIEENVFPSEI-TILSLIIE---CGFVGGLQLGKWLHAYILRNGF  306 (638)
Q Consensus       238 ----~-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~  306 (638)
                          + ...++..+..++..  .+++++|.+.|++..+.  .|+.. .+..+..+   +...++.+.|.+.++...+.. 
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-  205 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-  205 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence                1 12345555555554  45799999999998875  45543 33333333   445677888999998888765 


Q ss_pred             CCchhhHHHHHHHHH----hcCChHHHHHHHhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhh
Q 006627          307 EFSLAMANALVDMYG----KCREIRSARTLFDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN-EVT  378 (638)
Q Consensus       307 ~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~  378 (638)
                      +.+..++..+...+.    ..+++++|.+.+++..   ..+...+..+...|...|++++|+..+++..+.  .|+ ...
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~  283 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL  283 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence            334555555554444    3567888999998754   346677888999999999999999999998775  454 344


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627          379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH  455 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~  455 (638)
                      +..+...+...+...         .... .      ..........+.++.|...+++..   ..+...+..+...+...
T Consensus       284 ~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~  347 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA  347 (472)
T ss_dssp             HHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence            544444443211110         0000 0      001111112234566777776654   34667888899999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          456 GCGEEALIFFVDMERSGVKPNGI--TFIGLLN-ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      |++++|+..|++..+....|...  .+..+.. .....|++++|+..|++..+   +.|+........         ..+
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l  415 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKL  415 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHH
Confidence            99999999999998865333321  2333332 23578999999999999875   455543322222         233


Q ss_pred             HHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          533 HEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       533 ~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      .+++++. .. +.++.+|..+...+...|++++|+..|++++++.|.+|.+...+|
T Consensus       416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            3444433 22 346788999999999999999999999999999999988877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=6.4e-15  Score=137.53  Aligned_cols=225  Identities=10%  Similarity=-0.036  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627          343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA  422 (638)
Q Consensus       343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  422 (638)
                      .+..+...+...|++++|+..|++..+..  .+...+..+...+...|+++.|...++.+.+.. +.+            
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~------------   71 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REM------------   71 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-ccc------------
Confidence            34445555555555555555555555443  444455555555555555555555555544321 000            


Q ss_pred             hcCCHHHHHHHHHcCCCCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627          423 KCGDVNGAYRLFSEAIYRD----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       423 ~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  498 (638)
                                      .++    ...+..+...+...|++++|...+++..+.  .|+.       ..+...|++++|..
T Consensus        72 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           72 ----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK  126 (258)
T ss_dssp             ----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred             ----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence                            000    345556666667777777777777777764  3443       23555677788888


Q ss_pred             HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      .++++..  ..+.+...+..++..+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++++.+|
T Consensus       127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            8888765  23334566777778888888888888888777 2233 567788888888888888889988888888888


Q ss_pred             CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          577 QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       577 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +++..+..++.+|...|++++|.+.+++..+..
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            888888888999999999999988888876544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4e-15  Score=138.91  Aligned_cols=236  Identities=10%  Similarity=-0.052  Sum_probs=176.7

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc--CCC----hhhHHH
Q 006627          310 LAMANALVDMYGKCREIRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKV--RPN----EVTMVG  381 (638)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~  381 (638)
                      ...+..+...+...|++++|...|++..+  .+...+..+...+...|++++|+..+++......  .|+    ...+..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            45678899999999999999999987542  5678899999999999999999999999876421  112    355666


Q ss_pred             HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 006627          382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEA  461 (638)
Q Consensus       382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  461 (638)
                      +...+...|+++.|...++.+.+..  |+.                                      ..+...|++++|
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a  124 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE  124 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence            6667777777777777777776643  221                                      223444566677


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627          462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P  540 (638)
Q Consensus       462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  540 (638)
                      ...++++.... +.+...+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|.+.++++ .
T Consensus       125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            77777776642 223456777778888888888888888888763  3445677788888888888888888888877 3


Q ss_pred             CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC------CCCcchHHHHHHH
Q 006627          541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE------PQNYGYNVLMSNI  588 (638)
Q Consensus       541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~  588 (638)
                      ..| +..++..+...+...|++++|...++++++++      |++..++..+..+
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            334 47788888889999999999999999999988      8877777776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=1.1e-14  Score=137.51  Aligned_cols=241  Identities=8%  Similarity=-0.114  Sum_probs=184.9

Q ss_pred             hcCCHHHHHHHHHHHHHcCcC---CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627          353 QAHCIDKAFELFIHMKVSKVR---PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      ..|++++|+..++++......   .+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            346788888888887765321   134566677778888888888888888888775 5567788888888888999999


Q ss_pred             HHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhh
Q 006627          430 AYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHG  506 (638)
Q Consensus       430 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  506 (638)
                      |...|++..   ..+...+..+..++...|++++|...++++.+.  .|+.......+..+...|++++|...+++....
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            998888766   336778888899999999999999999999886  454444444555567779999999999888763


Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          507 LGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       507 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                        .+++...+ .++..+...++.++|.+.++++ ...|+     ...+..+...+...|++++|...++++++.+|++..
T Consensus       174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence              34444444 3677778888889999999887 33332     577888899999999999999999999999998754


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHH
Q 006627          581 YNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      .   .+.++...|++++|++.+
T Consensus       251 ~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 E---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHHhhHHHH
Confidence            3   477899999999998877

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=1.5e-14  Score=136.20  Aligned_cols=247  Identities=11%  Similarity=-0.000  Sum_probs=121.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHh
Q 006627          313 ANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCT  387 (638)
Q Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~  387 (638)
                      +......+...|++++|...|++..+   .+...+..+...+...|++++|+..+++....+..|+.  ..+..+...+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            33444555555555555555554431   13334555555555555555555555555442211111  12444444555


Q ss_pred             ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627          388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  467 (638)
                      ..|+++.|...++...+.. +.+..++..+...|...|++++|...+++.                              
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------------------  134 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ------------------------------  134 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG------------------------------
T ss_pred             HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------------
Confidence            5555555555555555443 333444444444455555555554444443                              


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC----C
Q 006627          468 MERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL---LDEAHEMIKSM----P  540 (638)
Q Consensus       468 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~  540 (638)
                       .+.. +.+...+..+...+...+++++|.+.++++.+.  .+.+...+..+..++...|+   +++|...++++    .
T Consensus       135 -l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  210 (272)
T 3u4t_A          135 -IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA  210 (272)
T ss_dssp             -CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred             -hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence             3321 222233333331222223555555555555431  12223344444444444444   44444444443    1


Q ss_pred             CCCC------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          541 LRPN------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       541 ~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      ..|+      ..++..+...+...|++++|...++++++++|+++.++..++.+....+.
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~  270 (272)
T 3u4t_A          211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH  270 (272)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence            1122      24566677888888999999999999999999998888888777655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=2.2e-13  Score=137.81  Aligned_cols=370  Identities=10%  Similarity=-0.007  Sum_probs=182.6

Q ss_pred             HHHHHHHHhcCCh---HHHHHHHhccCCCCcccHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627          213 TALIDMYSKCGNL---AYAKQLFNRLNQNSVVSWTVMISGYIRCN-----EINEGVRLFAEMIEENVFPSEITILSLIIE  284 (638)
Q Consensus       213 ~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  284 (638)
                      ..|...|...|+.   ++|...|++..+.+...+..+...+...+     ++++|.+.|++..+.|...   .+..+...
T Consensus        39 ~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~  115 (452)
T 3e4b_A           39 VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAML  115 (452)
T ss_dssp             GTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHH
T ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHH
Confidence            3344444455555   67777777666555556666666444444     5677777777777655322   33344444


Q ss_pred             hcccCChhh---HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC----hHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 006627          285 CGFVGGLQL---GKWLHAYILRNGFEFSLAMANALVDMYGKCRE----IRSARTLFDGMKSKDVMIWNAVISAYAQAHCI  357 (638)
Q Consensus       285 ~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~  357 (638)
                      |...+..+.   +.+.+......|   ++.....+...|...+.    .+.+..++......++.               
T Consensus       116 y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---------------  177 (452)
T 3e4b_A          116 YLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---------------  177 (452)
T ss_dssp             HHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---------------
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---------------
Confidence            443333222   222222222222   22233333334433332    22222233333333333               


Q ss_pred             HHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC---chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc----CCHHHH
Q 006627          358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG---ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC----GDVNGA  430 (638)
Q Consensus       358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A  430 (638)
                                          .+..+-..+...|   +.++|...++...+.| +++...+..|...|...    +++++|
T Consensus       178 --------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          178 --------------------CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             --------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             --------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence                                4444444444455   5555555555555555 34444334445555433    566666


Q ss_pred             HHHHHcCCCCCchhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-----cHHHHHHHHHH
Q 006627          431 YRLFSEAIYRDICMWNAMMAG-Y--GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG-----LVTEGKSVFDK  502 (638)
Q Consensus       431 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~  502 (638)
                      ..+|++....++..+..|... +  ...+++++|+..|++..+.|   +...+..+...|. .|     ++++|.+.|++
T Consensus       237 ~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            666666552345555555555 3  35678888888888888766   4555666666665 44     88999999888


Q ss_pred             HhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhcc
Q 006627          503 MVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEI  574 (638)
Q Consensus       503 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~  574 (638)
                      ..     +-++.....|...|..    ..++++|..+|++.-..-++.....+...|..    .+|.++|...++++.+.
T Consensus       313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            75     3455667777777765    34889999999887333345566667766654    45899999999999987


Q ss_pred             CCCCcchHHHHHHHH--HhcCCHHHHHHHHHHHhhcCC---cCCCCeeEEEECCEEEEEEeCCccC
Q 006627          575 EPQNYGYNVLMSNIY--AVANRWNDVAGVRRVMKEIRV---KKEPGFSSVEVNGLVHKFIRGGMVN  635 (638)
Q Consensus       575 ~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  635 (638)
                      .+..  ....+..+.  ...++..+|.+..++-.+...   .......-|.-+..+....+++-||
T Consensus       388 g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  451 (452)
T 3e4b_A          388 DTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDGEESLLEHHHHH  451 (452)
T ss_dssp             CCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCCBC-----------------
T ss_pred             CCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccchHHHHHhcccC
Confidence            7654  334444443  344577778887776654322   2222344444445566666666555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=9.3e-14  Score=130.80  Aligned_cols=226  Identities=7%  Similarity=-0.039  Sum_probs=168.3

Q ss_pred             HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCc----hhHHHHHHHHHhc
Q 006627          382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--RDI----CMWNAMMAGYGMH  455 (638)
Q Consensus       382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~  455 (638)
                      ....+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++...  ++.    ..|..+...+...
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            3344555566666666666655543 34444666666666667777777666665443  222    2367778888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627          456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM  535 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  535 (638)
                      |++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+  -.+.+...+..+...+...+++++|.+.
T Consensus        88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988864 44567899999999999999999999999986  3344567777777344455699999999


Q ss_pred             HHhC-CCCC-CHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCHHHHHHHH
Q 006627          536 IKSM-PLRP-NMIVWGALLAASKLHKN---PSMGEIAATQILEIE---PQN-----YGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       536 ~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      ++++ ...| +...+..+...+...|+   +++|...++++++..   |+.     ...+..++.+|...|++++|.+++
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9988 4445 46777888888888888   889999999999875   442     257888999999999999999999


Q ss_pred             HHHhhcCCc
Q 006627          603 RVMKEIRVK  611 (638)
Q Consensus       603 ~~~~~~~~~  611 (638)
                      ++..+..+.
T Consensus       245 ~~al~~~p~  253 (272)
T 3u4t_A          245 KNILALDPT  253 (272)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHhcCcc
Confidence            999776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=1.3e-13  Score=128.23  Aligned_cols=198  Identities=11%  Similarity=-0.085  Sum_probs=156.8

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC  487 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  487 (638)
                      ...+..+...+...|++++|...++++.   ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4556666677777777777777777654   2355677777788888888888888888888764 44667788888888


Q ss_pred             hccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627          488 SHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       488 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A  564 (638)
                      ...|++++|.++++++.+ .+..| +...+..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            889999999999988876 23445 4567778888888899999999988887 3334 577788888888999999999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            9999999999999888899999999999999999999998876544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.59  E-value=7.3e-16  Score=160.53  Aligned_cols=130  Identities=9%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccC-------CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHH
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLN-------QNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILS  280 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  280 (638)
                      ...+|++||++|++.|++++|.++|++|.       .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            34689999999999999999999997753       48999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCh-hhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 006627          281 LIIECGFVGGL-QLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK  337 (638)
Q Consensus       281 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  337 (638)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~  263 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS  263 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence            99999999985 7899999999999999999999999887776655555555544443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.59  E-value=8.5e-16  Score=160.06  Aligned_cols=148  Identities=10%  Similarity=0.099  Sum_probs=115.9

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMK-------SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG  381 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  381 (638)
                      -..+|+++|++|++.|++++|.++|++|.       .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            34567888888888888888888886643       57889999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCch-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhc
Q 006627          382 LLSLCTEAGAL-EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMH  455 (638)
Q Consensus       382 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~  455 (638)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++......+     .+.+...|.+.|.+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d  285 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD  285 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence            99999999985 788999999999999999999999998777755444444443222211     133444455556554


Q ss_pred             C
Q 006627          456 G  456 (638)
Q Consensus       456 ~  456 (638)
                      +
T Consensus       286 ~  286 (1134)
T 3spa_A          286 G  286 (1134)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.59  E-value=2.7e-14  Score=131.94  Aligned_cols=200  Identities=15%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             HhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHH
Q 006627          386 CTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEAL  462 (638)
Q Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~  462 (638)
                      +...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.   ..+...+..+...+...|++++|.
T Consensus        33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (243)
T 2q7f_A           33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK  111 (243)
T ss_dssp             ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence            333334444444433333322 2233333334444444444444444443322   113334444445555555555555


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 006627          463 IFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL  541 (638)
Q Consensus       463 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  541 (638)
                      ..++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..++..+.+.|++++|.+.++++ ..
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5555555543 334455555555666666666666666665542  2234445555555566666666666665554 22


Q ss_pred             CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          542 RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       542 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      .| +..++..+...+...|++++|...++++++++|+++..+..++.+.
T Consensus       189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            22 3455555566666666666666666666666666655555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=1.6e-13  Score=125.00  Aligned_cols=198  Identities=12%  Similarity=-0.031  Sum_probs=146.2

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA  486 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  486 (638)
                      +...+..+...+...|++++|.+.++++.   ..+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            34455556666666666666666666544   2245566667777777777788888887777653 4456777778888


Q ss_pred             Hhcc-CcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627          487 CSHA-GLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       487 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  562 (638)
                      +... |++++|...++++.+ .+..|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8888 888888888888876 233343 466777788888888888888888776 3334 4677778888888888888


Q ss_pred             HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          563 MGEIAATQILEIEP-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       563 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +|...++++++..| +++..+..++.++...|++++|..+++.+.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            88888888888888 888888888888888888888888888876544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=9.4e-14  Score=135.88  Aligned_cols=223  Identities=11%  Similarity=0.026  Sum_probs=160.5

Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHHHHcCC---CCCchhHHHHHHHHHhcC
Q 006627          381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD-VNGAYRLFSEAI---YRDICMWNAMMAGYGMHG  456 (638)
Q Consensus       381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~  456 (638)
                      .+...+...|++++|...++.+.+.. +.+...|..+..++...|+ +++|+..|+++.   ..+...|..+..++...|
T Consensus       102 ~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g  180 (382)
T 2h6f_A          102 YFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR  180 (382)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence            33344445555555555555555544 4455556666666666665 666666666655   224556777777777778


Q ss_pred             ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh-cCChHHH---
Q 006627          457 CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR-AGLLDEA---  532 (638)
Q Consensus       457 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A---  532 (638)
                      ++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.  .+-+...|+.+..++.+ .|..++|   
T Consensus       181 ~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~  257 (382)
T 2h6f_A          181 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLE  257 (382)
T ss_dssp             CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence            8888888888888764 446678888888888888888888888888862  33456778888888888 5655777   


Q ss_pred             --HHHHHhC-CCCC-CHhhHHHHHHHHhhcC--ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------CHHH
Q 006627          533 --HEMIKSM-PLRP-NMIVWGALLAASKLHK--NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN---------RWND  597 (638)
Q Consensus       533 --~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~  597 (638)
                        ++.++++ ...| +...|..+...+...|  ++++|...++++ +.+|+++.++..++++|.+.|         .+++
T Consensus       258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~  336 (382)
T 2h6f_A          258 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK  336 (382)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence              4667666 4455 4678888888888877  689999999998 999999999999999999875         3589


Q ss_pred             HHHHHHHH-hhc
Q 006627          598 VAGVRRVM-KEI  608 (638)
Q Consensus       598 A~~~~~~~-~~~  608 (638)
                      |+++++++ .+.
T Consensus       337 A~~~~~~l~~~~  348 (382)
T 2h6f_A          337 ALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            99999988 443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=3e-14  Score=131.62  Aligned_cols=200  Identities=13%  Similarity=0.049  Sum_probs=158.1

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL  484 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~  484 (638)
                      ......+..+...+...|++++|...|+++..   .+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            34566777788889999999999999988763   356788889999999999999999999999874 45678899999


Q ss_pred             HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChH
Q 006627          485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~  562 (638)
                      ..+...|++++|.++++++.+.  .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999873  3456778889999999999999999999987 333 36788889999999999999


Q ss_pred             HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +|...++++++..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            999999999999999999999999999999999999999999976544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.58  E-value=2.6e-13  Score=137.24  Aligned_cols=345  Identities=10%  Similarity=-0.023  Sum_probs=227.2

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCCh---hhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627          245 VMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGL---QLGKWLHAYILRNGFEFSLAMANALVDMYG  321 (638)
Q Consensus       245 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (638)
                      .+...+.+.|++++|.++|++..+.|.   ...+..+-..+...|+.   ++|...|+...+.    ++..+..+...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            356677888999999999999988763   33344444555566777   8899998888755    4455566666455


Q ss_pred             hcC-----ChHHHHHHHhcCCCC-CchhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          322 KCR-----EIRSARTLFDGMKSK-DVMIWNAVISAYAQAHCID---KAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       322 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      ..+     ++++|...|++..++ +...+..|...|...+..+   ++.+.+......|   +......+...+...+.+
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence            544     778899999886644 5567788888887766544   3455555555444   344555566666666655


Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHHcCCCC---CchhHHHHHHHHHhc----CChHHHH
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG---DVNGAYRLFSEAIYR---DICMWNAMMAGYGMH----GCGEEAL  462 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~  462 (638)
                      +.+......+.+.-...++..+..|...|...|   +.++|.+.|++....   +...+..+...|...    +++++|+
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            444444333333322344458888889999999   899999999876532   333346677777555    6899999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHH-H--hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 006627          463 IFFVDMERSGVKPNGITFIGLLNA-C--SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG-----LLDEAHE  534 (638)
Q Consensus       463 ~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~  534 (638)
                      ..|++.. .|   +...+..+... +  ...+++++|.+.|++..+. |   +...+..|..+|. .|     ++++|.+
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            9999977 43   33445555554 3  4688999999999998874 4   5667777887776 55     9999999


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 006627          535 MIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMK  606 (638)
Q Consensus       535 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  606 (638)
                      +|++.- .-++..+..+...|..    ..|+++|...++++.+.  .++.....|+.+|..    ..++++|...|++..
T Consensus       309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            999988 6677888888877766    34899999999999874  567889999999885    569999999999988


Q ss_pred             hcCCc
Q 006627          607 EIRVK  611 (638)
Q Consensus       607 ~~~~~  611 (638)
                      +.|..
T Consensus       386 ~~g~~  390 (452)
T 3e4b_A          386 AQDTP  390 (452)
T ss_dssp             TTCCH
T ss_pred             HCCCH
Confidence            77653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=2.7e-13  Score=132.60  Aligned_cols=247  Identities=8%  Similarity=-0.014  Sum_probs=199.2

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA-LEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      ...|..+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|...++++.+.. +.+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            3467777788888899999999999887653 2345567777778888886 999999999998877 667888899999


Q ss_pred             HHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHHH
Q 006627          420 MYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-AGLVTE  495 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~  495 (638)
                      ++...|++++|+..|+++.   ..+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            9999999999999998877   3367788889999999999999999999999874 4466788888888888 566577


Q ss_pred             H-----HHHHHHHhhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHhhHHHHHHHHhhcC--------
Q 006627          496 G-----KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG--LLDEAHEMIKSMPLRP-NMIVWGALLAASKLHK--------  559 (638)
Q Consensus       496 a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------  559 (638)
                      |     ++.++++++.  .+-+...|..+..++...|  ++++|.+.+.++...| +...+..++..+...|        
T Consensus       254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            7     5888888762  3345678888888888888  6899999998885455 4677788888887764        


Q ss_pred             C-hHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 006627          560 N-PSMGEIAATQI-LEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       560 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      + .++|+.+++++ .+++|.....|..++..+...
T Consensus       332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            2 58999999999 999999999999988876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=6.6e-13  Score=124.99  Aligned_cols=224  Identities=9%  Similarity=-0.093  Sum_probs=118.7

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHH
Q 006627          340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKT  415 (638)
Q Consensus       340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (638)
                      ++..+..+...+...|++++|+..|++..+.   .+...+..+...+..    .+++++|...+++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3445555666666666666776666666552   233344445555555    566666666666655543   344444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 006627          416 ALVDMYAK----CGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH--  489 (638)
Q Consensus       416 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--  489 (638)
                      .+...|..    .+++                               ++|+..+++..+.+   +...+..+...|..  
T Consensus        79 ~lg~~~~~g~~~~~~~-------------------------------~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~  124 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNT-------------------------------NKALQYYSKACDLK---YAEGCASLGGIYHDGK  124 (273)
T ss_dssp             HHHHHHHHTSSSCCCH-------------------------------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhCCCCcccCH-------------------------------HHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence            44444544    4444                               45555554444432   33444444445544  


Q ss_pred             --cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cC
Q 006627          490 --AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HK  559 (638)
Q Consensus       490 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~  559 (638)
                        .+++++|.+.+++..+. +   +...+..+...+..    .+++++|.+++++.-...++..+..+...+..    .+
T Consensus       125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~  200 (273)
T 1ouv_A          125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK  200 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred             CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence              55555555555555542 2   33344444555544    55555555555554111234445555555555    55


Q ss_pred             ChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHhhcC
Q 006627          560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  609 (638)
                      ++++|...++++.+..|  +..+..++.+|..    .+++++|.+.+++..+.+
T Consensus       201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            66666666666665544  4455566666666    666666666666555444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=1.6e-13  Score=120.63  Aligned_cols=167  Identities=11%  Similarity=-0.003  Sum_probs=142.7

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627          441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV  520 (638)
Q Consensus       441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  520 (638)
                      +...|..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..+..  ..+.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence            45677788888888899999999999988864 44667888899999999999999999999876  3344566777788


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  598 (638)
                      ..+...++++.|.+.+.++ ...| +...+..+...+...|++++|+..++++++++|+++.++..+|.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            8889999999999999887 3344 5778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 006627          599 AGVRRVMKEIRV  610 (638)
Q Consensus       599 ~~~~~~~~~~~~  610 (638)
                      ++.|++..+..+
T Consensus       161 ~~~~~~al~~~p  172 (184)
T 3vtx_A          161 VKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHTTH
T ss_pred             HHHHHHHHhCCc
Confidence            999998876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=5.3e-13  Score=123.98  Aligned_cols=208  Identities=12%  Similarity=-0.024  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY  421 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (638)
                      ..+..+...+...|++++|...++++.... +.+...+..+...+...|+++.|...++.+.+.. +.            
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~------------  103 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR------------  103 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC------------
Confidence            344555555555566666666665554432 2233344444444444455555555444444432 22            


Q ss_pred             HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHH
Q 006627          422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVF  500 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~  500 (638)
                                         +...+..+...+...|++++|..+++++.+.+..| +...+..+..++...|++++|.+.+
T Consensus       104 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  164 (252)
T 2ho1_A          104 -------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF  164 (252)
T ss_dssp             -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                               33455555666666666777777777666532344 3456777777788888888888888


Q ss_pred             HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      +++.+.  .+.+...+..++.++...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus       165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            887763  2345667778888888888888888888877 3333 56677778888888999999999999999999998


Q ss_pred             cchHHH
Q 006627          579 YGYNVL  584 (638)
Q Consensus       579 ~~~~~~  584 (638)
                      +.....
T Consensus       243 ~~~~~~  248 (252)
T 2ho1_A          243 LEYQEF  248 (252)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=9.7e-13  Score=119.69  Aligned_cols=204  Identities=10%  Similarity=-0.052  Sum_probs=138.0

Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627          379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH  455 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~  455 (638)
                      +..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.+++..   ..+...+..+...+...
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            3334444444555555555555444433 3334455555555555566666655555443   22445566667777777


Q ss_pred             -CChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 006627          456 -GCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAH  533 (638)
Q Consensus       456 -~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  533 (638)
                       |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.  .+.+...+..++.++.+.|++++|.
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHH
Confidence             777888888877776323343 467777888888888888888888888763  3345677888888888889999998


Q ss_pred             HHHHhC-CCC--CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          534 EMIKSM-PLR--PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       534 ~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      +.++++ ...  .+...+..+...+...|+.+.|...++.+.+.+|+++.....+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            888877 223  3566677777777889999999999999999999987766554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=7.2e-13  Score=119.61  Aligned_cols=204  Identities=14%  Similarity=-0.007  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY  421 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (638)
                      ..+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+..++
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            344444445555555555555555544321 2233344444444555555555555555555443 33344444444444


Q ss_pred             HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 006627          422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFD  501 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  501 (638)
                      ...+..           ...         .....|++++|+..+++..+.. +-+...+..+..++...|++++|...|+
T Consensus        84 ~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~  142 (217)
T 2pl2_A           84 VALYRQ-----------AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLK  142 (217)
T ss_dssp             HHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            443000           000         0001144555555555554432 2233444555555555555555555555


Q ss_pred             HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHH
Q 006627          502 KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQI  571 (638)
Q Consensus       502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~  571 (638)
                      ++.+. .  .+...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|+..++++
T Consensus       143 ~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          143 QALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            55543 2  44445555555555555555555555554 2223 3444455555555555555555555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=8.1e-14  Score=141.89  Aligned_cols=209  Identities=11%  Similarity=-0.019  Sum_probs=169.2

Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH-HHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627          392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV-NGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  467 (638)
                      ++.+...++...... +.+...+..+...|...|++ ++|++.|++..   ..+...|..+..+|...|++++|...|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444454443332 34566667777777777777 77777777655   22466788888888888999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHhcc---------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc--------CChH
Q 006627          468 MERSGVKPNGITFIGLLNACSHA---------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA--------GLLD  530 (638)
Q Consensus       468 m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~  530 (638)
                      ..+.  .|+...+..+..++...         |++++|.+.++++.+.  .+.+...|..+..+|...        |+++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            8875  57778888899999999         9999999999999873  344578888999999988        9999


Q ss_pred             HHHHHHHhC-CCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          531 EAHEMIKSM-PLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       531 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      +|++.|+++ ...|    +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999988 4455    68889999999999999999999999999999999999999999999999999999765443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=1.6e-13  Score=129.37  Aligned_cols=221  Identities=10%  Similarity=-0.098  Sum_probs=181.0

Q ss_pred             HhccCchHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH
Q 006627          386 CTEAGALEMGKWLHTYIEKQGL---EVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE  459 (638)
Q Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  459 (638)
                      ....|+++.|...++.+.+...   +.+..++..+...+...|++++|...|+++.   ..+...|..+...+...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            3456889999999999988632   2356788889999999999999999999876   346788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      +|+..++++.+.. +.+...+..+..++...|++++|.+.++++.+.   .|+..........+...|++++|...+++.
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999874 446788999999999999999999999999863   354444444555667789999999999776


Q ss_pred             -CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          540 -PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       540 -~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                       ...|+......++..+...++.++|...++++++..|.    ++..+..++.+|...|++++|...++++.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence             22333333334677778888999999999999998774    368899999999999999999999999987654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=3.3e-12  Score=120.19  Aligned_cols=230  Identities=11%  Similarity=-0.078  Sum_probs=166.2

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLL  383 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  383 (638)
                      ++..+..+...+...|++++|...|++..++ +...+..+...+..    .+++++|+..|++..+.+   +...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            5667788899999999999999999987755 56678888889999    999999999999998875   677788888


Q ss_pred             HHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 006627          384 SLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGE  459 (638)
Q Consensus       384 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  459 (638)
                      ..+..    .+++++|...++...+.+   +...+..+...|....                           ...++++
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~  131 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK  131 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence            88888    999999999999998764   4455555555555500                           0034445


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDE  531 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  531 (638)
                      +|+..+++..+.+   +...+..+...+..    .+++++|.+.+++..+.    .+...+..+..+|..    .+++++
T Consensus       132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~  204 (273)
T 1ouv_A          132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE  204 (273)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            5555555555543   33445555555555    67777777777777653    234556666777777    777777


Q ss_pred             HHHHHHhC-CCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCc
Q 006627          532 AHEMIKSM-PLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       532 A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      |.+++++. ... +...+..+...+..    .+++++|...++++.++.|+++
T Consensus       205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            77777766 222 25666677777777    7888888888888888887653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=9.4e-14  Score=139.55  Aligned_cols=259  Identities=10%  Similarity=-0.065  Sum_probs=170.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCcCCC-h----hhHHHHHHHHhccCchHHHHHHHHHHHHh----C-CCCcccHHHH
Q 006627          347 VISAYAQAHCIDKAFELFIHMKVSKVRPN-E----VTMVGLLSLCTEAGALEMGKWLHTYIEKQ----G-LEVDVILKTA  416 (638)
Q Consensus       347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~  416 (638)
                      +...+...|++++|+..|++..+.+  |+ .    ..+..+...+...|+++.|...+++..+.    + .+....++..
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  131 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN  131 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence            3445555666666666666655432  22 1    23444555555666666666666555432    1 1223345555


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCC---------CchhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYR---------DICMWNAMMAGYGMHGC-----------------GEEALIFFVDMER  470 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~  470 (638)
                      +...|...|++++|...+++....         ...++..+...+...|+                 +++|+..+++..+
T Consensus       132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  211 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK  211 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            666666666666666666554311         22356666667777777                 7777777776543


Q ss_pred             c----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627          471 S----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-P  540 (638)
Q Consensus       471 ~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  540 (638)
                      .    +-.|. ..++..+...+...|++++|.+.+++..+...-.++    ...+..+..++...|++++|.+.++++ .
T Consensus       212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            2    21222 246777888888999999999999888753111112    236778888899999999999998876 1


Q ss_pred             CC---C----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          541 LR---P----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       541 ~~---p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ..   .    ...++..+...+...|++++|...+++++++.++.      ...+..++.+|...|++++|.+++++..+
T Consensus       292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            11   1    14667788888999999999999999999875543      34788999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.51  E-value=3.7e-13  Score=130.91  Aligned_cols=260  Identities=12%  Similarity=-0.020  Sum_probs=173.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCC-----hhhHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CcccHHHHH
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPN-----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ----GLE-VDVILKTAL  417 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l  417 (638)
                      ...+...|++++|...|+++....  |+     ...+..+...+...|+++.|...++...+.    +.+ ....++..+
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            445555666666666666655532  22     134445555566666666666666554332    111 124455566


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGC--------------------GEEALIFFVDM  468 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m  468 (638)
                      ...|...|++++|...+++...     ++    ..++..+...+...|+                    +++|...+++.
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            6666777777777766665431     11    2356666677777777                    77777777765


Q ss_pred             HHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          469 ERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       469 ~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      ...    +-.|. ..++..+...+...|++++|.+.+++..+...-.++    ...+..+...+...|++++|.+.+++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            432    21222 246777888889999999999999988753111111    236778888999999999999999876


Q ss_pred             -C---CCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          540 -P---LRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       540 -~---~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                       .   ..++    ..++..+...+...|++++|...++++++..|..      ...+..++.+|...|++++|.+++++.
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence             1   1112    4567778888999999999999999999876543      347889999999999999999999988


Q ss_pred             hhcC
Q 006627          606 KEIR  609 (638)
Q Consensus       606 ~~~~  609 (638)
                      .+..
T Consensus       330 ~~~~  333 (338)
T 3ro2_A          330 LEIS  333 (338)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            7543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=5.5e-13  Score=133.60  Aligned_cols=269  Identities=13%  Similarity=0.002  Sum_probs=123.7

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-C----chhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCC-hh
Q 006627          310 LAMANALVDMYGKCREIRSARTLFDGMKS--K-D----VMIWNAVISAYAQAHCIDKAFELFIHMKVS----KVRPN-EV  377 (638)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~  377 (638)
                      ...+......+...|++++|...|++..+  + +    ...+..+...+...|++++|...+++....    +..|. ..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            33445556666666777776666665442  2 2    134555666666666666666666664322    11111 22


Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHHhC----CC-CcccHHHHHHHHHHhcCC--------------------HHHHHH
Q 006627          378 TMVGLLSLCTEAGALEMGKWLHTYIEKQG----LE-VDVILKTALVDMYAKCGD--------------------VNGAYR  432 (638)
Q Consensus       378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~  432 (638)
                      .+..+...+...|+++.|...++...+..    .+ ....++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            34445555566666666666666554421    00 012344555555555555                    555555


Q ss_pred             HHHcCCC-----C----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCcHHHHHH
Q 006627          433 LFSEAIY-----R----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN----GITFIGLLNACSHAGLVTEGKS  498 (638)
Q Consensus       433 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~  498 (638)
                      .+++...     +    ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            5443220     0    112344444445555555555555554443200 011    1234444444555555555555


Q ss_pred             HHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HhhHHHHHHHHhhcCChHHHHH
Q 006627          499 VFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRPN----MIVWGALLAASKLHKNPSMGEI  566 (638)
Q Consensus       499 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~A~~  566 (638)
                      .+++..+...-.++    ...+..+...+...|++++|.+.++++ .   ..++    ..++..+...+...|++++|..
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55544321100011    233444444445555555555554443 0   0011    2333444444444555555555


Q ss_pred             HHHHHhccCCCC
Q 006627          567 AATQILEIEPQN  578 (638)
Q Consensus       567 ~~~~~~~~~p~~  578 (638)
                      .+++++++.+..
T Consensus       329 ~~~~al~~~~~~  340 (406)
T 3sf4_A          329 FAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            555555544444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.45  E-value=3.8e-10  Score=117.92  Aligned_cols=417  Identities=9%  Similarity=0.009  Sum_probs=261.3

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCc---hHHHHHHHHHHHHhccCCCCchhH
Q 006627          135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVAD---VDLGKAIHACVVRNCKDEKLGVAI  211 (638)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~  211 (638)
                      .|..+|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++   .+.+..+|+..+...+.+ +++..
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~-~sv~L  141 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN-NDLSL  141 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC-CCHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC-CCHHH
Confidence            36778888999888888999999999988875 33444556666666666677   888888888887766421 26667


Q ss_pred             HHHHHHHHHhcCCh--------HHHHHHHhccC------CC-CcccHHHHHHHHHh---------CCChHHHHHHHHHHH
Q 006627          212 ATALIDMYSKCGNL--------AYAKQLFNRLN------QN-SVVSWTVMISGYIR---------CNEINEGVRLFAEMI  267 (638)
Q Consensus       212 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~  267 (638)
                      |...+....+.++.        +...++|+...      .+ +...|...+.....         .++.+.+..+|+...
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            77766655554443        22335555422      12 22456655554332         234566677777766


Q ss_pred             HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc-------CCC--
Q 006627          268 EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDG-------MKS--  338 (638)
Q Consensus       268 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--  338 (638)
                      ......-..+|.....-.... +...+..++.+.                     ..+++.|...+.+       +..  
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~  279 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNL  279 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             hCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence            421111112222111111000 111122221111                     0111222222211       110  


Q ss_pred             ------------C--C------chhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627          339 ------------K--D------VMIWNAVISAYAQAH-------CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA  391 (638)
Q Consensus       339 ------------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  391 (638)
                                  |  +      ...|...+.---..+       ..+.+..+|++.... ++-+...|......+...|+
T Consensus       280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~  358 (679)
T 4e6h_A          280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT  358 (679)
T ss_dssp             CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred             ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence                        0  0      123444443222221       123456678777654 24456677777777778888


Q ss_pred             hHHHH-HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-------------CC------------chhH
Q 006627          392 LEMGK-WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-------------RD------------ICMW  445 (638)
Q Consensus       392 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~  445 (638)
                      .+.|. .+++...... |.+...+...+....+.|+++.|.++|+++..             |+            ...|
T Consensus       359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW  437 (679)
T 4e6h_A          359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY  437 (679)
T ss_dssp             CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence            88896 9999988753 66777777888889999999999999987663             31            2367


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNACSH-AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      ...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|.++|+...+.  ++.+...+...++..
T Consensus       438 i~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          438 CVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            88888888889999999999999875 2 2223344433333333 35599999999999985  444566677888888


Q ss_pred             HhcCChHHHHHHHHhC-CCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          524 GRAGLLDEAHEMIKSM-PLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      ...|+.+.|..+|+++ ...|    ....|..++..-...|+.+.+..+.+++.+..|+++.
T Consensus       515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            8999999999999997 3333    2467888888888999999999999999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.44  E-value=8.3e-13  Score=132.29  Aligned_cols=267  Identities=11%  Similarity=-0.053  Sum_probs=167.8

Q ss_pred             CChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCC-----C----C
Q 006627          273 PSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFS---LAMANALVDMYGKCREIRSARTLFDGMKS-----K----D  340 (638)
Q Consensus       273 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~  340 (638)
                      +....+......+...|+++.|...++...+......   ..++..+...+...|++++|...+++...     .    .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3444455566667777888888888877777642211   24566777777778888887777765431     1    2


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-CCC----hhhHHHHHHHHhccCc--------------------hHHH
Q 006627          341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKV-RPN----EVTMVGLLSLCTEAGA--------------------LEMG  395 (638)
Q Consensus       341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a  395 (638)
                      ...+..+...+...|++++|+..+++...... .++    ..++..+...+...|+                    ++.|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            33566667777777888888877777654311 112    2255566667777777                    7777


Q ss_pred             HHHHHHHHHh----CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHH
Q 006627          396 KWLHTYIEKQ----GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEA  461 (638)
Q Consensus       396 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A  461 (638)
                      ...++...+.    +. +....++..+...|...|++++|...+++...     ++    ..++..+...+...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            7777765442    11 11234566677777777888888777766541     11    12666777777778888888


Q ss_pred             HHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 006627          462 LIFFVDMERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       462 ~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A  532 (638)
                      ...+++..+.    +..+. ..++..+...+...|++++|.+.+++..+...-.++    ...+..+..++...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8877776643    11111 345667777777788888888877776642111111    34566677777778888888


Q ss_pred             HHHHHhC
Q 006627          533 HEMIKSM  539 (638)
Q Consensus       533 ~~~~~~~  539 (638)
                      .+.+++.
T Consensus       327 ~~~~~~a  333 (406)
T 3sf4_A          327 MHFAEKH  333 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=3.1e-12  Score=112.26  Aligned_cols=167  Identities=13%  Similarity=0.056  Sum_probs=135.9

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627          410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA  486 (638)
Q Consensus       410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  486 (638)
                      +..+|..+...|...|++++|++.|++..   ..++..+..+..++...|++++|+..+++..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            45567777777888888888888887765   2356677778888888888888888888888764 4456677778888


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A  564 (638)
                      +...++++.|.+.+.+..+  ..+.+...+..+..++.+.|++++|++.++++ ...| +..+|..+...+...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            8899999999999999886  34456678888899999999999999999887 4445 578899999999999999999


Q ss_pred             HHHHHHHhccCCCCc
Q 006627          565 EIAATQILEIEPQNY  579 (638)
Q Consensus       565 ~~~~~~~~~~~p~~~  579 (638)
                      +..++++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=2e-12  Score=113.47  Aligned_cols=165  Identities=11%  Similarity=0.002  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG  524 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  524 (638)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.  .+.+...+..++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            3334444555555555555555554432 234455556666666666666666666666542  2334555666666666


Q ss_pred             hcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          525 RAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       525 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                      ..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.+++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            667777777766665 2 23356677778888888899999999999999999998889999999999999999999999


Q ss_pred             HHHhhcCCcC
Q 006627          603 RVMKEIRVKK  612 (638)
Q Consensus       603 ~~~~~~~~~~  612 (638)
                      +++.+..+..
T Consensus       168 ~~~~~~~~~~  177 (186)
T 3as5_A          168 KKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHcCCCc
Confidence            9887655433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=2.4e-12  Score=136.19  Aligned_cols=163  Identities=12%  Similarity=0.063  Sum_probs=140.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      ..+|+.|...+...|++++|+..|++..+.. +-+...+..+..+|.+.|++++|++.|+++++.  .+-+...|..+..
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~   85 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            4567778888888888888888888888763 334678888999999999999999999998863  2334678888999


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 006627          522 LLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA  599 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  599 (638)
                      +|...|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|...|+|++|.
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            999999999999999887 5556 47889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 006627          600 GVRRVMKE  607 (638)
Q Consensus       600 ~~~~~~~~  607 (638)
                      +.++++.+
T Consensus       166 ~~~~kal~  173 (723)
T 4gyw_A          166 ERMKKLVS  173 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.3e-12  Score=125.59  Aligned_cols=242  Identities=10%  Similarity=-0.003  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVS-------KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL-  407 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  407 (638)
                      ..+..+...+...|++++|..+++++...       ........+..+...+...|+++.|...++...+.      +- 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            45666777778888888888888777552       11223345556666777777777777777766553      11 


Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Q 006627          408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNA  486 (638)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~  486 (638)
                      +....++..+...|...|++++|...+++..                        ++.+.... +-.| ....+..+...
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~-~~~~~~~~~~~~la~~  162 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------------------EIREKVLG-KDHPDVAKQLNNLALL  162 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHHHHhcC-CCChHHHHHHHHHHHH
Confidence            2234455556666666666666666554322                        11111100 1112 22345555566


Q ss_pred             HhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC------
Q 006627          487 CSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSMP----------LRPN------  544 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~------  544 (638)
                      +...|++++|.++++++.+..     +..| ....+..+..++...|++++|.+.++++-          ..|.      
T Consensus       163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  242 (311)
T 3nf1_A          163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM  242 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence            666666666666666655420     0011 22445556666666666666666665541          1111      


Q ss_pred             -HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          545 -MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       545 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                       ...+......+...+.+.++...++++....|..+..+..++.+|...|++++|.+++++..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             1112222233345566777888888888888888899999999999999999999999987653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=4.8e-11  Score=114.22  Aligned_cols=217  Identities=8%  Similarity=0.015  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCcCCChhhHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627          358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCT-------EAGAL-------EMGKWLHTYIEKQGLEVDVILKTALVDMYAK  423 (638)
Q Consensus       358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  423 (638)
                      ++|..+|++..... +-+...|..+...+.       ..|++       ++|..++++..+.-.+.+...+..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45555665554431 223334444444333       23443       5555555555542113334455555555555


Q ss_pred             cCCHHHHHHHHHcCCC--C-Cch-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccCcHHHHHH
Q 006627          424 CGDVNGAYRLFSEAIY--R-DIC-MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS-HAGLVTEGKS  498 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~  498 (638)
                      .|++++|.++|++...  | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555432  2 222 45555555555555555555555555432 222233322222211 2455555555


Q ss_pred             HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRP--NMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      +|+++.+.  .+.+...|..++..+.+.|+.++|..+|+++ .   ..|  ....|..++......|+.+.|..++++++
T Consensus       191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555542  1223444555555555555555555555554 1   133  13344555555555555555555555555


Q ss_pred             ccCCCC
Q 006627          573 EIEPQN  578 (638)
Q Consensus       573 ~~~p~~  578 (638)
                      +..|++
T Consensus       269 ~~~p~~  274 (308)
T 2ond_A          269 TAFREE  274 (308)
T ss_dssp             HHTTTT
T ss_pred             HHcccc
Confidence            555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.39  E-value=5.5e-12  Score=125.20  Aligned_cols=222  Identities=8%  Similarity=-0.031  Sum_probs=144.6

Q ss_pred             HHhccCchHHHHHHHHHHHHh----CCCC-cccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----C-----CchhHHHHH
Q 006627          385 LCTEAGALEMGKWLHTYIEKQ----GLEV-DVILKTALVDMYAKCGDVNGAYRLFSEAIY-----R-----DICMWNAMM  449 (638)
Q Consensus       385 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~  449 (638)
                      .+...|+++.|...++...+.    +-++ ...++..+...|...|++++|...+++...     +     ...+++.+.
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  191 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA  191 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            344555566666555555442    1011 234555566666666666666666554331     1     123566667


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CC-CCChhHHHHHH
Q 006627          450 AGYGMHGCGEEALIFFVDMERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GL-VPKIEHYGCMV  520 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~  520 (638)
                      .+|...|++++|+..+++..+.    +-.+. ..++..+..+|...|++++|.+.+++..+-.   +. +....++..+.
T Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  271 (383)
T 3ulq_A          192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT  271 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            7777777777777777776543    11111 1467778888888888888888888876511   22 22346677888


Q ss_pred             HHHHhcCChHHHHHHHHhC-CC-----CCC-HhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PL-----RPN-MIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      .++.+.|++++|.+.+++. ..     .|. ...+..+...+...|+   .++|...+++. ...|.....+..++.+|.
T Consensus       272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~  350 (383)
T 3ulq_A          272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH  350 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence            8888889999988888876 11     222 2234556677778888   77788877776 344455667889999999


Q ss_pred             hcCCHHHHHHHHHHHhh
Q 006627          591 VANRWNDVAGVRRVMKE  607 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~  607 (638)
                      ..|++++|.+++++..+
T Consensus       351 ~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          351 ERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            99999999999998865

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.39  E-value=1.1e-09  Score=114.32  Aligned_cols=436  Identities=8%  Similarity=-0.035  Sum_probs=259.0

Q ss_pred             chHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 006627          153 PEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN---LAYAK  229 (638)
Q Consensus       153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~  229 (638)
                      ..+.+..|++..... +-|..+|..++..+...++++.++.+++.++..-+.   ....|...+..-.+.|+   ++.+.
T Consensus        48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHH
Confidence            444454555554443 346667777777777777777777777777766544   46666666666666666   77777


Q ss_pred             HHHhccCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHHHH-cCc-cCCh-HhHHHHHHHhcc------
Q 006627          230 QLFNRLNQ-----NSVVSWTVMISGYIRCNEI--------NEGVRLFAEMIE-ENV-FPSE-ITILSLIIECGF------  287 (638)
Q Consensus       230 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~------  287 (638)
                      .+|++...     |++..|...+....+.++.        +.+.++|+.... -|. .|+. ..|...+.-...      
T Consensus       124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~  203 (679)
T 4e6h_A          124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK  203 (679)
T ss_dssp             HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence            77776653     4445555555544444332        222345544433 244 3432 344444432211      


Q ss_pred             ---cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 006627          288 ---VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELF  364 (638)
Q Consensus       288 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  364 (638)
                         .++.+.+..+|+..+......-..+|..... +.+.         +      +..+...++.-  ...+++.|...+
T Consensus       204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~---------~------~~~~a~~~~~e--~~~~y~~Ar~~~  265 (679)
T 4e6h_A          204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQD---------V------NQLTARRHIGE--LSAQYMNARSLY  265 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHH---------H------CTTTHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHh---------c------CcchHHHHHHH--hhHHHHHHHHHH
Confidence               1233445555555442110001112211111 0000         0      00010011110  112344455555


Q ss_pred             HHHHHc--CcC---CC--------------------hhhHHHHHHHHhccC-------chHHHHHHHHHHHHhCCCCccc
Q 006627          365 IHMKVS--KVR---PN--------------------EVTMVGLLSLCTEAG-------ALEMGKWLHTYIEKQGLEVDVI  412 (638)
Q Consensus       365 ~~m~~~--g~~---p~--------------------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~  412 (638)
                      .++...  ++.   |.                    ...|...+.--...+       ..+.+..+|++....- +....
T Consensus       266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~  344 (679)
T 4e6h_A          266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE  344 (679)
T ss_dssp             HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence            443211  111   11                    012333332222211       1234556788777764 66788


Q ss_pred             HHHHHHHHHHhcCCHHHHH-HHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCc---
Q 006627          413 LKTALVDMYAKCGDVNGAY-RLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV---------KPN---  476 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---------~p~---  476 (638)
                      +|...+..+...|+.++|. .+|++..   ..+...|...+...-..|+++.|..+|+++.+...         .|+   
T Consensus       345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~  424 (679)
T 4e6h_A          345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES  424 (679)
T ss_dssp             HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence            8888888888899999996 9998766   23555677788888899999999999999886410         132   


Q ss_pred             ---------HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCC
Q 006627          477 ---------GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA-GLLDEAHEMIKSM-P-LRPN  544 (638)
Q Consensus       477 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~-~~p~  544 (638)
                               ...|...+....+.|+.+.|..+|.++.+. ...+....|...+..-.+. ++.+.|..+|+.. . .+-+
T Consensus       425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~  503 (679)
T 4e6h_A          425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD  503 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence                     235777777778889999999999999873 1122334444333333344 4589999999887 2 2335


Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  612 (638)
                      ...|..++......|+.+.|+.+|+++++..|+   ....|..+...-...|+.+.+..+.+++.+.-+..
T Consensus       504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            667778888888899999999999999998883   45678888888899999999999999998776643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.38  E-value=9.1e-11  Score=112.28  Aligned_cols=213  Identities=8%  Similarity=-0.043  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHH-------hcCCH-------HHHHHHHHcCCC---C-CchhHHHHHHHHHh
Q 006627          393 EMGKWLHTYIEKQGLEVDVILKTALVDMYA-------KCGDV-------NGAYRLFSEAIY---R-DICMWNAMMAGYGM  454 (638)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~  454 (638)
                      +.|..+|++..... +.++..|..++..+.       +.|++       ++|..+|++...   | +...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45555666665543 445555655555554       23554       666666665442   2 33466666666666


Q ss_pred             cCChHHHHHHHHHHHHcCCCCcH-H-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH-hcCChHH
Q 006627          455 HGCGEEALIFFVDMERSGVKPNG-I-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG-RAGLLDE  531 (638)
Q Consensus       455 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~  531 (638)
                      .|++++|..+|++..+.  .|+. . .|..++..+.+.|++++|..+|+++.+.  .+++...|...+.... ..|+.++
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence            67777777777766653  3432 2 5666666666666677777777666642  2233334433322211 2466777


Q ss_pred             HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEI---EPQ-NYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      |.++|+++ ...| +...|..++..+...|++++|+.+|+++++.   .|+ ....|..++..+.+.|++++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77766665 2222 4556666666666667777777777777664   342 4456666666666667777777666666


Q ss_pred             hhcCC
Q 006627          606 KEIRV  610 (638)
Q Consensus       606 ~~~~~  610 (638)
                      .+..+
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            55444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=1.9e-11  Score=111.48  Aligned_cols=167  Identities=7%  Similarity=-0.113  Sum_probs=100.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      +..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+  ..+.+...+..+..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~   84 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence            3444445555555666666666666655554224555555555666666666666666666654  22223455555666


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCC-H-------hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHH
Q 006627          522 LLGRAGLLDEAHEMIKSM-PLRPN-M-------IVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYA  590 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~  590 (638)
                      ++...|++++|++.+++. ...|+ .       ..|..+...+...|++++|+..++++++++|+  ++..+..++.+|.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            666666666666666555 22232 2       33555555666666666666666666666666  6666666666666


Q ss_pred             hcCCH---------------------------HHHHHHHHHHhhcCC
Q 006627          591 VANRW---------------------------NDVAGVRRVMKEIRV  610 (638)
Q Consensus       591 ~~g~~---------------------------~~A~~~~~~~~~~~~  610 (638)
                      ..|+.                           ++|+.++++..+..+
T Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            66666                           999999998876554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.37  E-value=3.2e-12  Score=128.31  Aligned_cols=135  Identities=11%  Similarity=-0.031  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC----Ch
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN----GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP----KI  513 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~  513 (638)
                      ..+..+...+...|++++|+..+++..+... .++    ..++..+...+...|++++|...++++.+...-..    ..
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  303 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA  303 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3566667777777888888777777664310 011    13677788888899999999998888765311111    14


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PL------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      ..+..+..++...|++++|.++++++ ..      .+ ...++..+...+...|++++|...+++++++.+.
T Consensus       304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            56778888889999999999998876 11      11 1346777888899999999999999999988765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=3.3e-11  Score=109.85  Aligned_cols=206  Identities=11%  Similarity=0.030  Sum_probs=155.4

Q ss_pred             CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHH
Q 006627          374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMA  450 (638)
Q Consensus       374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~  450 (638)
                      .|+..+......+...|++++|...++...+..-+++...+..+..++...|++++|...+++....   +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            4566777778888899999999999999998773377777777889999999999999999887632   4567888889


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPNG-------ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK---IEHYGCMV  520 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~  520 (638)
                      ++...|++++|+..+++..+.. +.+.       ..|..+...+...|++++|.+.++++.+   ..|+   ...+..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence            9999999999999999988864 3344       4577777888889999999999999875   3454   56777777


Q ss_pred             HHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      .++...|+.     .++++ .. ..+...+....  ....+.+++|+..++++++++|+++.+...++.+..
T Consensus       161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            777665543     22332 11 12233333222  344567899999999999999999988888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.35  E-value=1e-11  Score=120.61  Aligned_cols=134  Identities=13%  Similarity=-0.006  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hh
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERS----GVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IE  514 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~  514 (638)
                      .+..+...+...|++++|...+++..+.    +.++ ...++..+...+...|++++|.+.+++..+...-.++    ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            5566666777777777777777776542    1111 1236777788888889999999888887652111111    45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CC---CC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PL---RP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .+..+..++...|++++|...++++ ..   .+    ...++..+...+...|++++|...+++++++.+.
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            6777888888999999999988876 11   11    1446777888899999999999999999988765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=5.4e-11  Score=118.00  Aligned_cols=229  Identities=8%  Similarity=-0.050  Sum_probs=156.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC-cCCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C----CCcccHHHH
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSK-VRPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L----EVDVILKTA  416 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~  416 (638)
                      ...+...|++++|+..+++....- -.++    ..++..+...+...|+++.|...+++..+.-  .    +....++..
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            344556666666666666654321 0111    2345555566666667776666666655421  0    112345666


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPN-GITFIG  482 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~  482 (638)
                      +...|...|++++|...+++...     ++    ..++..+..+|...|++++|+..+++..+.    +..|+ ..++..
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            77777777888888777766541     11    136777888888889999999888887762    32243 467888


Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HhhHHHHHHHH
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGL---GLVPKIEHYGCMVDLLGRAGL---LDEAHEMIKSMPLRPN-MIVWGALLAAS  555 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~  555 (638)
                      +..++...|++++|.+.+++..+..   +.+.....+..+...+...|+   .++|+.++++.+..|+ ...+..+...+
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  349 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY  349 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999887531   111222345677888888998   8999999999865554 45677888999


Q ss_pred             hhcCChHHHHHHHHHHhccCC
Q 006627          556 KLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      ...|++++|...+++++++..
T Consensus       350 ~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          350 HERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999988544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=1.6e-11  Score=124.88  Aligned_cols=180  Identities=9%  Similarity=-0.013  Sum_probs=156.7

Q ss_pred             HHHHHHHHHcCC---CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627          427 VNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCG-EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK  502 (638)
Q Consensus       427 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  502 (638)
                      ++++...+++..   ..+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666665443   33667888899999999999 99999999999874 44578999999999999999999999999


Q ss_pred             HhhhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc--------CChHH
Q 006627          503 MVHGLGLVPKIEHYGCMVDLLGRA---------GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH--------KNPSM  563 (638)
Q Consensus       503 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~~  563 (638)
                      +.+   ..|+...+..+..++...         |++++|++.++++ ...| +...|..+..++...        |++++
T Consensus       163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            985   457788899999999999         9999999999998 4445 578899999999888        99999


Q ss_pred             HHHHHHHHhccCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          564 GEIAATQILEIEP---QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       564 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |+..++++++++|   +++..+..++.+|...|++++|++.|++..+..+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999   9999999999999999999999999999876543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=7.8e-10  Score=109.16  Aligned_cols=256  Identities=13%  Similarity=-0.043  Sum_probs=127.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChh----hHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCc----ccHHHHHHHHH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEV----TMVGLLSLCTEAGALEMGKWLHTYIEKQGL-EVD----VILKTALVDMY  421 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~  421 (638)
                      +...|++++|...+++.....-..+..    .+..+...+...|+++.|...+++.....- ..+    ..++..+...+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            344555555555555544322111111    222333344445555555555554443210 001    12233445555


Q ss_pred             HhcCCHHHHHHHHHcCCC----------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--cHHHHHHHHHH
Q 006627          422 AKCGDVNGAYRLFSEAIY----------R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVK--P--NGITFIGLLNA  486 (638)
Q Consensus       422 ~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~l~~~  486 (638)
                      ...|++++|...+++...          + ....+..+...+...|++++|...+++.......  +  ...++..+...
T Consensus       104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  183 (373)
T 1hz4_A          104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  183 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence            556666666555544321          1 1123444555566666666666666665543211  1  12345556666


Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----CMVDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAAS  555 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~  555 (638)
                      +...|++++|...+++.............+.     ..+..+...|++++|..++++. ...|.     ...+..+...+
T Consensus       184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~  263 (373)
T 1hz4_A          184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  263 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence            6677777777777766654211111111111     1223355667777777777666 11111     12344555666


Q ss_pred             hhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          556 KLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ...|++++|...++++.+..+..      ...+..++.++...|++++|...+++..
T Consensus       264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            66777777777777776543321      1255566777777777777777766654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.31  E-value=7e-11  Score=103.50  Aligned_cols=169  Identities=14%  Similarity=-0.031  Sum_probs=143.5

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC  487 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  487 (638)
                      ...+..+...+...|++++|...++++...   +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345666778888999999999999987733   56778888899999999999999999998874 55678888899999


Q ss_pred             hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHH
Q 006627          488 SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       488 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      ...|++++|.++++++.+.  .+.+...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999873  4556788888999999999999999999987 3333 5788889999999999999999


Q ss_pred             HHHHHHhccCCCCcchH
Q 006627          566 IAATQILEIEPQNYGYN  582 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~~  582 (638)
                      ..++++++..|+++...
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          165 PHFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHHcCCCchhhH
Confidence            99999999999876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=4.4e-11  Score=118.34  Aligned_cols=221  Identities=10%  Similarity=-0.041  Sum_probs=141.3

Q ss_pred             HhccCchHHHHHHHHHHHHhCC--C---CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----CC-----chhHHHHHH
Q 006627          386 CTEAGALEMGKWLHTYIEKQGL--E---VDVILKTALVDMYAKCGDVNGAYRLFSEAIY-----RD-----ICMWNAMMA  450 (638)
Q Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~~  450 (638)
                      +...|+++.|...+++..+...  +   ....++..+...|...|+++.|...+++...     ++     ..+++.+..
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            4455666666666665544210  0   1234455566666666666666666554331     11     235666677


Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCCChhHHHHHHHH
Q 006627          451 GYGMHGCGEEALIFFVDMERS----GVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVPKIEHYGCMVDL  522 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~  522 (638)
                      +|...|++++|.+.+++..+.    +-++ ...++..+..+|...|++++|.+.+++..+-.   +.+....++..+..+
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            777777777777777776542    1111 12467778888888889999888888877511   222235667778888


Q ss_pred             HHhcCChHHHHHHHHhC----CC--CCC-HhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          523 LGRAGLLDEAHEMIKSM----PL--RPN-MIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      +.+.|++++|.+++++.    +.  .|. ...+..+...+...++   +.+|...+++. ...|.....+..++.+|...
T Consensus       271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~  349 (378)
T 3q15_A          271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS  349 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence            88899999998888876    11  222 2334455556666777   77777777762 23344456778899999999


Q ss_pred             CCHHHHHHHHHHHhh
Q 006627          593 NRWNDVAGVRRVMKE  607 (638)
Q Consensus       593 g~~~~A~~~~~~~~~  607 (638)
                      |++++|.+++++..+
T Consensus       350 g~~~~A~~~~~~al~  364 (378)
T 3q15_A          350 CHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=2.4e-11  Score=116.57  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=138.2

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHhcCCC--------C---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc------Cc
Q 006627          310 LAMANALVDMYGKCREIRSARTLFDGMKS--------K---DVMIWNAVISAYAQAHCIDKAFELFIHMKVS------KV  372 (638)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~  372 (638)
                      ..++..+...+...|++++|...++++.+        .   ....+..+...+...|++++|...+++....      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34455566666666666666666665543        1   2345666777778888888888888776543      21


Q ss_pred             CC-ChhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchh
Q 006627          373 RP-NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICM  444 (638)
Q Consensus       373 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  444 (638)
                      .| ....+..+...+...|+++.|...++.+.+.      +. +.....+..+...+...|++++|.             
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-------------  173 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE-------------  173 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH-------------
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence            22 3446667778888899999999988887653      11 112333444444555555555554             


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc------CCCC
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERS------GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL------GLVP  511 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p  511 (638)
                                        .+++++.+.      +..|+ ..++..+..++...|++++|.++++++.+..      ...+
T Consensus       174 ------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  235 (311)
T 3nf1_A          174 ------------------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD  235 (311)
T ss_dssp             ------------------HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence                              444444432      11232 2456777777778888888888877776420      0111


Q ss_pred             C-------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          512 K-------IEHYGCMVDLLGRAGLLDEAHEMIKSMP-LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       512 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .       ...+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|...+++++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            1       1122222333445566666666666662 334 4677888999999999999999999999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=2.1e-10  Score=108.18  Aligned_cols=208  Identities=10%  Similarity=0.014  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHH
Q 006627          376 EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAM  448 (638)
Q Consensus       376 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l  448 (638)
                      ..++..+...+...|+++.|...++.+.+.      +- +....++..+...|...|++++|.+.+++            
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------  110 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR------------  110 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH------------
Confidence            344555666666677777777776666543      11 22234555555666666666666655533            


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHH
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDL  522 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~  522 (638)
                                  |+.++++......+....++..+...+...|++++|..+++++.+..     +..| ....+..+..+
T Consensus       111 ------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  178 (283)
T 3edt_B          111 ------------ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC  178 (283)
T ss_dssp             ------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                        22222221111111123556666777777777777777777765420     1122 23556667777


Q ss_pred             HHhcCChHHHHHHHHhC-C---------CCCC-HhhHHHHHHHHhhcC------ChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          523 LGRAGLLDEAHEMIKSM-P---------LRPN-MIVWGALLAASKLHK------NPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      +...|++++|.++++++ .         ..+. ...+..+.......+      .+..+...++......|..+..+..+
T Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (283)
T 3edt_B          179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL  258 (283)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            77777777777777665 1         1222 223333333333222      23344444444444556667789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhh
Q 006627          586 SNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       586 ~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +.+|...|++++|..++++..+
T Consensus       259 a~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          259 GALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999998764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.22  E-value=8.2e-10  Score=100.10  Aligned_cols=184  Identities=11%  Similarity=-0.090  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCC--CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHH
Q 006627          413 LKTALVDMYAKCGDVNGAYRLFSEAIY--RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG----ITFIG  482 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~  482 (638)
                      .+..+...+...|++++|...|+++..  |+    ...+..+..++...|++++|+..|+++.+..  |+.    ..+..
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~   83 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence            344455566666777777776666552  22    1345556666666677777777766666542  221    13333


Q ss_pred             HHHHHhc------------------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 006627          483 LLNACSH------------------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN  544 (638)
Q Consensus       483 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~  544 (638)
                      +..++..                  .|++++|...|+++++.  .+-+............-.+..               
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~---------------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL---------------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence            3333332                  34555555555555432  111111111111000000000               


Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG  615 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  615 (638)
                      ......+...+...|++++|+..++++++..|+++   .++..++.+|.+.|++++|++.++.+...++..+.+
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            01113456678899999999999999999999976   579999999999999999999999998887766554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.20  E-value=3.7e-09  Score=104.46  Aligned_cols=228  Identities=7%  Similarity=-0.047  Sum_probs=158.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCc-CCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C---C-CcccHHHH
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKV-RPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L---E-VDVILKTA  416 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~  416 (638)
                      ...+...|++++|+..+++...... .++    ..++..+...+...|+++.|...+++..+..  .   + ....++..
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3445667777777777777654311 122    2345556666777777777777777665421  0   1 12445667


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcHHHHHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPNGITFIGL  483 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l  483 (638)
                      +...|...|++++|.+.+++...     ++    ..++..+..+|...|++++|+..+++..+.    +.+....++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            77778888888888877766542     12    246677788888889999999988887761    223335678889


Q ss_pred             HHHHhccCcHHHHHHHHHHHhhhcCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HhhHHHHHHHHh
Q 006627          484 LNACSHAGLVTEGKSVFDKMVHGLGL---VPKIEHYGCMVDLLGRAGL---LDEAHEMIKSMPLRPN-MIVWGALLAASK  556 (638)
Q Consensus       484 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~  556 (638)
                      ...+.+.|++++|...+++..+...-   +.....+..+...+...|+   .++|+.++++.+..|+ ...+..+...+.
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~  347 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE  347 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            99999999999999999998864222   1223455666677778888   8999999998754444 456677888999


Q ss_pred             hcCChHHHHHHHHHHhccC
Q 006627          557 LHKNPSMGEIAATQILEIE  575 (638)
Q Consensus       557 ~~~~~~~A~~~~~~~~~~~  575 (638)
                      ..|++++|...++++++..
T Consensus       348 ~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          348 SSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998743

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.19  E-value=2.6e-10  Score=108.07  Aligned_cols=162  Identities=6%  Similarity=-0.109  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCCCC----h
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GITFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLVPK----I  513 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~  513 (638)
                      +|+.+..+|...|++++|+..+++..+...   .+.  ..++..+...|... |++++|+..|++..+...-..+    .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            455555555566666666666555543210   111  24567777777775 8888888888887653111111    3


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch---
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM--------IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY---  581 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---  581 (638)
                      .++..++..+.+.|++++|+..++++ ...|+.        ..+..+...+...|++++|+..++++++++|+....   
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence            45777788888888888888888876 223321        145666777778888888888888888888875442   


Q ss_pred             --HHHHHHHHH--hcCCHHHHHHHHHHH
Q 006627          582 --NVLMSNIYA--VANRWNDVAGVRRVM  605 (638)
Q Consensus       582 --~~~l~~~~~--~~g~~~~A~~~~~~~  605 (638)
                        +..++.++.  ..+++++|+..|+++
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence              334555554  456788888887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.18  E-value=1.7e-09  Score=99.92  Aligned_cols=245  Identities=7%  Similarity=-0.030  Sum_probs=158.4

Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCchh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHH
Q 006627          317 VDMYGKCREIRSARTLFDGMKSKDVMI-WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMG  395 (638)
Q Consensus       317 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  395 (638)
                      ++...-.|.+..++.-...+...+... -.-+.+++...|+++..         ..-.|....+..+...+ ..+    +
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a   85 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N   85 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred             HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence            445566788888888666665433332 23345777777776631         11233333444443333 222    5


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627          396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMHGCGEEALIFFVDMER  470 (638)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  470 (638)
                      ...+++....+ +++...+..+..++...|++++|++++.+....     +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66676666554 455555567788888889999998888876432     445677778888888899999998888877


Q ss_pred             cCCCC-----cHHHHHHHHHHH--hccC--cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627          471 SGVKP-----NGITFIGLLNAC--SHAG--LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P  540 (638)
Q Consensus       471 ~~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  540 (638)
                      .  .|     +..+...++.++  ...|  ++.+|..+|+++...   .|+......+..++.+.|++++|.+.++.+ .
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5  56     356666666553  3334  788888888888653   344233333444788888888888888765 2


Q ss_pred             C----------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          541 L----------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       541 ~----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .          .| ++.++..++......|+  +|.+.++++.+..|+++.+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            1          24 45666455555555665  778888888888888765543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=5.9e-10  Score=103.80  Aligned_cols=185  Identities=8%  Similarity=-0.080  Sum_probs=112.4

Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-C---chhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-HHHH
Q 006627          409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-D---ICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN-GITF  480 (638)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~  480 (638)
                      .+...+..+...+.+.|++++|...|+++..  | +   ...+..+..++...|++++|+..|++..+... .|. ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3445555666667777777777777776652  2 2   34556666667777777777777777766521 112 2445


Q ss_pred             HHHHHHHhc--------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHH
Q 006627          481 IGLLNACSH--------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALL  552 (638)
Q Consensus       481 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  552 (638)
                      ..+..++..        .|++++|...|+++.+..  +.+......+.......++.               ...+..+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la  155 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA  155 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence            555666666        677777777777766532  11112221111110000000               11135566


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCC
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVA----------NRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~  610 (638)
                      ..+...|++++|+..++++++..|++   +..+..++.+|...          |++++|...++++.+..+
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            77788888888888888888888874   34778888888866          888888888888876544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=2.5e-11  Score=102.01  Aligned_cols=140  Identities=9%  Similarity=-0.095  Sum_probs=106.6

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCCh
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLL  529 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  529 (638)
                      .+...|++++|+..+++....  .|+ ...+..+...|.+.|++++|.+.|+++++.  .+-+...|..+..++.+.|++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence            344556777777777776543  343 345667778888888888888888888762  334567788888888888888


Q ss_pred             HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEI-AATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      ++|+..|+++ ...| ++.++..+...+...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            8888888877 4455 47788888888999998876655 4689999999999999999999888875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.15  E-value=2.8e-10  Score=120.42  Aligned_cols=166  Identities=12%  Similarity=0.137  Sum_probs=128.2

Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHcCC--C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627          409 VDVILKTALVDMYAKCGDVNGAYRLFSEAI--Y-RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN  485 (638)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  485 (638)
                      .+...++.|...|.+.|++++|++.|++..  . .+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            345667777777777777777777777655  2 345677778888888888888888888888763 334578888888


Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM  563 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~  563 (638)
                      ++...|++++|++.|+++.+.  .+-+...+..+..+|...|++++|++.++++ ...|+ ...+..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            888888888888888888762  2334677888888888889999998888887 55564 6788888888889999999


Q ss_pred             HHHHHHHHhccCCC
Q 006627          564 GEIAATQILEIEPQ  577 (638)
Q Consensus       564 A~~~~~~~~~~~p~  577 (638)
                      |.+.+++++++.|+
T Consensus       164 A~~~~~kal~l~~~  177 (723)
T 4gyw_A          164 YDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChh
Confidence            99999988876553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=9e-10  Score=90.49  Aligned_cols=128  Identities=17%  Similarity=0.120  Sum_probs=84.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKL  557 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~  557 (638)
                      +..+...+...|++++|..+++++.+.  .+.+...+..++..+...|++++|..+++++ .. +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            334444455555555555555555442  1223444555555555555666666555554 11 2245566677777888


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      .|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            8888888888888888888888888888999999999999999888876544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=1.6e-09  Score=102.57  Aligned_cols=226  Identities=10%  Similarity=-0.052  Sum_probs=138.4

Q ss_pred             ChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCC-hhhHHHHHHHHhccCchHHHHHHH
Q 006627          325 EIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS----KVRPN-EVTMVGLLSLCTEAGALEMGKWLH  399 (638)
Q Consensus       325 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  399 (638)
                      ++++|...|.+           ....|...|++++|...|.+....    |-.++ ..+|..+..++...|++++|...+
T Consensus        32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36667666554           355667777777777777765432    11111 234555555555566666666555


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---CC
Q 006627          400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERSGV---KP  475 (638)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~---~p  475 (638)
                      +...+.               +...|++..+           ..+++.+...|... |++++|+..+++..+...   .+
T Consensus       101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            554431               1112222221           12455667777775 888888888887765310   11


Q ss_pred             -c-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHh-
Q 006627          476 -N-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMI-  546 (638)
Q Consensus       476 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-  546 (638)
                       . ..++..+...+...|++++|...|+++.+...-.+..     ..+..++.++...|++++|...+++. ...|+.. 
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence             1 3467888888999999999999999988632111221     15677888899999999999999987 4555422 


Q ss_pred             -----hHHHHHHHHh--hcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627          547 -----VWGALLAASK--LHKNPSMGEIAATQILEIEPQNYGYNVLMSN  587 (638)
Q Consensus       547 -----~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  587 (638)
                           .+..++.++.  ..+++++|+..|+++.+++|.+...+..+-.
T Consensus       235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~  282 (292)
T 1qqe_A          235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE  282 (292)
T ss_dssp             ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence                 2344455554  3467889999999999988876544444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.13  E-value=7.3e-10  Score=103.19  Aligned_cols=204  Identities=11%  Similarity=-0.044  Sum_probs=144.5

Q ss_pred             CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-C---chh
Q 006627          374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAIY--R-D---ICM  444 (638)
Q Consensus       374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~  444 (638)
                      .+...+..+...+.+.|+++.|...|+.+.+.. |.+   ...+..+..+|.+.|++++|...|++...  | +   ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            345566677778889999999999999998865 334   66788889999999999999999998773  3 2   345


Q ss_pred             HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627          445 WNAMMAGYGM--------HGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH  515 (638)
Q Consensus       445 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~  515 (638)
                      +..+..++..        .|++++|+..|++..+.  .|+. .....+.              .+..+...     -...
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~  150 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARK  150 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHH
Confidence            6777888888        99999999999999986  3433 2222211              11111110     0112


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhc----------CChHHHHHHHHHHhccCCCCcc
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLH----------KNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      +..+..+|.+.|++++|+..++++ ...|+    ...+..+..++...          |++++|...++++++..|+++.
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            445677788888888888888776 22332    45666677777655          8899999999999999999864


Q ss_pred             ---hHHHHHHHHHhcCCHHHHH
Q 006627          581 ---YNVLMSNIYAVANRWNDVA  599 (638)
Q Consensus       581 ---~~~~l~~~~~~~g~~~~A~  599 (638)
                         +...+..++...|+++++.
T Consensus       231 ~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          231 LRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Confidence               4556666666666655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=4.4e-10  Score=119.67  Aligned_cols=145  Identities=9%  Similarity=-0.100  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL  522 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  522 (638)
                      ..+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|+++.+.  .+.+...+..+..+
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~  510 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAAT  510 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence            344444444444555555555555544432 223344444444555555555555555555431  12233444445555


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          523 LGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      +.+.|++++ ++.++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++..
T Consensus       511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            555555555 5554444 2222 234444555555555555555555555555555555555555555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.09  E-value=5.5e-08  Score=95.83  Aligned_cols=191  Identities=11%  Similarity=0.001  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCC-------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC--C--Chhh
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKS-------K----DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR--P--NEVT  378 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~  378 (638)
                      ..+...+...|++++|...+++...       +    ....+..+...+...|++++|...+++.......  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            3444555555666665555544321       1    1123444555666677777777777665443211  1  1223


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc-cHHH-----HHHHHHHhcCCHHHHHHHHHcCCCCCc-------hhH
Q 006627          379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV-ILKT-----ALVDMYAKCGDVNGAYRLFSEAIYRDI-------CMW  445 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~  445 (638)
                      +..+...+...|+++.|...++......-.++. ..+.     ..+..+...|++++|...+++...++.       ..+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            445555666677777777777666543111111 1111     122335566666666666666553321       123


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERS----GVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMV  504 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  504 (638)
                      ..+...+...|++++|...+++....    |..++. ..+..+..++...|+.++|...+++..
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34445555555555555555554321    111111 133334444445555555555555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=7.2e-09  Score=95.83  Aligned_cols=241  Identities=7%  Similarity=-0.032  Sum_probs=166.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627          348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV  427 (638)
Q Consensus       348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  427 (638)
                      |+-..-.|++..++.-...+..   .........+.+++...|++...         ..-.|....+..+...+ ..+  
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred             HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence            3455668888888874333211   11222333445777777766531         11133333444444333 322  


Q ss_pred             HHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          428 NGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       428 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                        |...|++...   ++...+..+..++...|++++|++++.+.+..+-.+ +...+...+..+.+.|+.+.|.+.+++|
T Consensus        85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              6777776652   455566678888999999999999999987665212 4577888899999999999999999999


Q ss_pred             hhhcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          504 VHGLGLVP-----KIEHYGCMVDL--LGRAG--LLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       504 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .+   ..|     +..+...|..+  ....|  +.++|..+|+++ ...|+..+...+++++.+.|++++|+..++.+.+
T Consensus       163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            75   356     24555555555  33344  899999999998 4456534444555688899999999999998887


Q ss_pred             c----------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          574 I----------EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       574 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .          +|+++.++..++.+....|+  +|.++++++.+..+
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            6          58899999888888888998  88999999877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.08  E-value=1.8e-09  Score=101.86  Aligned_cols=172  Identities=10%  Similarity=-0.028  Sum_probs=137.0

Q ss_pred             HHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCC
Q 006627          431 YRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLV  510 (638)
Q Consensus       431 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  510 (638)
                      ...+......+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++++...   .
T Consensus       106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~  181 (287)
T 3qou_A          106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D  181 (287)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence            334444443445556667777888899999999999988874 446678888999999999999999999988753   4


Q ss_pred             CChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC--cchHHHH
Q 006627          511 PKIEHYG-CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN--YGYNVLM  585 (638)
Q Consensus       511 p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l  585 (638)
                      |+..... .....+...++.++|...++++ ...| +...+..+...+...|++++|+..++++++.+|++  +.++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            5543332 2233466778888899888887 3345 57889999999999999999999999999999998  8899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHh
Q 006627          586 SNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       586 ~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      +.+|...|+.++|...+++..
T Consensus       262 ~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          262 QEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHH
Confidence            999999999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.05  E-value=1.6e-10  Score=96.96  Aligned_cols=125  Identities=10%  Similarity=-0.036  Sum_probs=104.0

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK  559 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~  559 (638)
                      |...+...|++++|++.++....   ..|+ ...+..+..+|.+.|++++|++.|+++ ...| ++.+|..+...+...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44566788999999999998864   3343 455667899999999999999999998 5555 5889999999999999


Q ss_pred             ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHHhhcCC
Q 006627          560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV-RRVMKEIRV  610 (638)
Q Consensus       560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~  610 (638)
                      ++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999887765 577765443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.05  E-value=5.3e-09  Score=85.77  Aligned_cols=132  Identities=18%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            45667778888888888888888888764 446677888888888889999999999988763  344566778888889


Q ss_pred             HhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          524 GRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      ...|++++|.++++++ ... .+...+..+...+...|++++|...++++++.+|++
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999887 223 356778888889999999999999999999988863

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.04  E-value=2.6e-09  Score=111.83  Aligned_cols=160  Identities=10%  Similarity=-0.037  Sum_probs=121.8

Q ss_pred             cCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 006627          424 CGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF  500 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  500 (638)
                      .|++++|.+.+++....   +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            47888999999887632   56788888999999999999999999998764 445678888999999999999999999


Q ss_pred             HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CChHHHHHHHHHHhccC
Q 006627          501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KNPSMGEIAATQILEIE  575 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~  575 (638)
                      ++..+.  .+.+...+..+..++.+.|++++|.+.++++ ...| +...+..+...+...   |++++|...++++++.+
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999873  3445678888999999999999999999887 3444 567888888888888   99999999999999999


Q ss_pred             CCCcchHHHHH
Q 006627          576 PQNYGYNVLMS  586 (638)
Q Consensus       576 p~~~~~~~~l~  586 (638)
                      |++...+..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99888888776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.02  E-value=1.9e-09  Score=93.44  Aligned_cols=159  Identities=9%  Similarity=-0.006  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-H
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-L  523 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~  523 (638)
                      +..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.   .|+...+..+... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            3444555666677777777777665542 334566777777777777777777777776543   2233322222211 1


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHH
Q 006627          524 GRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN--YGYNVLMSNIYAVANRWNDVA  599 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~  599 (638)
                      ...+...+|...++++ ...| +...+..+...+...|++++|...++++++.+|+.  +..+..++.+|...|+.++|.
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2223334566777666 3455 57888889999999999999999999999999975  558999999999999999999


Q ss_pred             HHHHHHhh
Q 006627          600 GVRRVMKE  607 (638)
Q Consensus       600 ~~~~~~~~  607 (638)
                      ..|++...
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987753

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=2.1e-08  Score=89.61  Aligned_cols=162  Identities=8%  Similarity=-0.083  Sum_probs=127.6

Q ss_pred             CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----cHHHHHHHHHHHhhhcCCCCChhH
Q 006627          440 RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG----LVTEGKSVFDKMVHGLGLVPKIEH  515 (638)
Q Consensus       440 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~  515 (638)
                      .++..+..+...|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|.++|++..+.    -++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence            355666667777777788888888888887765   45666677777777 6    889999999988763    35567


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHH
Q 006627          516 YGCMVDLLGR----AGLLDEAHEMIKSM-PLRPN---MIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       516 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      +..|...|..    .+++++|.+++++. ...|.   +..+..+...|..    .+++++|...++++.++ |.++..+.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7778888876    78999999999887 44443   7888888888887    78899999999999998 66788899


Q ss_pred             HHHHHHHhc-C-----CHHHHHHHHHHHhhcCC
Q 006627          584 LMSNIYAVA-N-----RWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       584 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~  610 (638)
                      .|+.+|..- |     ++++|.+.|++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999998764 3     89999999999877664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.00  E-value=6.5e-09  Score=92.75  Aligned_cols=130  Identities=6%  Similarity=-0.005  Sum_probs=98.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      ..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+.  .+.+...+..+..+|..
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            347788889999999999999998874 446678899999999999999999999999873  34456788888888766


Q ss_pred             cCC--hHHHHHHHHhCC-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          526 AGL--LDEAHEMIKSMP-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       526 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      .|+  .+.+...++... ..|....+.....++...|++++|+..++++++++|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            654  445566666653 22233344555666777899999999999999999974

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.99  E-value=1e-07  Score=89.28  Aligned_cols=210  Identities=13%  Similarity=0.073  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC--CHHHHHHHHHcCCC---CCchhHHHHHHHH----Hhc---CChHHH
Q 006627          394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCG--DVNGAYRLFSEAIY---RDICMWNAMMAGY----GMH---GCGEEA  461 (638)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~A  461 (638)
                      +|....+.+...+ |-+..+++.-...+...|  ++++++++++.+..   .+..+|+.-...+    ...   ++++++
T Consensus        51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            4444444444433 333333444444444444  55555555554441   1333444333333    333   567777


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH--HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC------hHHHH
Q 006627          462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVT--EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL------LDEAH  533 (638)
Q Consensus       462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~  533 (638)
                      +.+++++.+.. +-|...|..-...+.+.|.++  +++++++++.+.  .+-+...|+.-..++.+.|+      +++++
T Consensus       130 L~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl  206 (306)
T 3dra_A          130 FDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEEL  206 (306)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            77887777764 446666766666666677766  778888887763  34455666666666666665      77777


Q ss_pred             HHHHhC-CCCC-CHhhHHHHHHHHhhcCC-hHHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          534 EMIKSM-PLRP-NMIVWGALLAASKLHKN-PSMGEIAATQILEIE---PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       534 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +.++++ ...| |...|..+...+...|+ .+....+++++++++   |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus       207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            777766 3344 57777777777777766 444666777777766   77788888888888888888888888888764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.97  E-value=3e-09  Score=88.65  Aligned_cols=98  Identities=7%  Similarity=-0.054  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+...+.+.|++++|...|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            456667777888888888888888877 4445 57888899999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhcCC
Q 006627          591 VANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..|++++|+..|++..+..+
T Consensus       116 ~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHhCC
Confidence            99999999999998876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.97  E-value=2e-08  Score=106.91  Aligned_cols=169  Identities=12%  Similarity=-0.069  Sum_probs=101.8

Q ss_pred             hccCchHHHHHHHHHHH--------HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627          387 TEAGALEMGKWLHTYIE--------KQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH  455 (638)
Q Consensus       387 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~  455 (638)
                      ...|++++|.+.++...        +.. +.+...+..+...|...|++++|.+.|++..   ..+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            45566666666666665        322 4445556666666666677777766666655   22455666666666777


Q ss_pred             CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627          456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM  535 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  535 (638)
                      |++++|+..|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+.  .+.+...+..+..++.+.|++++|++.
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777766653 2244566666667777777777 7777776652  233445666677777777777777777


Q ss_pred             HHhC-CCCCC-HhhHHHHHHHHhhcCC
Q 006627          536 IKSM-PLRPN-MIVWGALLAASKLHKN  560 (638)
Q Consensus       536 ~~~~-~~~p~-~~~~~~l~~~~~~~~~  560 (638)
                      ++++ ...|+ ...+..+..++...++
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            7766 45554 4555555555544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.96  E-value=4.4e-09  Score=85.02  Aligned_cols=109  Identities=13%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+......+.+.|++++|++.|++.++  -.+.+...|..+..++.+.|++++|++.++++ ...| +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            3455556666666666666666666654  22334455555666666666666666666555 2233 355566666666


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      ...|++++|+..++++++++|+++.++..|+.+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            666666666666666666666666666555544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.95  E-value=1.9e-09  Score=101.50  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDLLGRAGLLDEAH  533 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~  533 (638)
                      +|++++++......+....++..+...+...|++++|...++++.+..     +..| ....+..+..++...|++++|.
T Consensus        26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  105 (283)
T 3edt_B           26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE  105 (283)
T ss_dssp             HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence            344444444432212234667788888888888888888888877531     1122 3467778888888889999888


Q ss_pred             HHHHhC-CC--------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCH
Q 006627          534 EMIKSM-PL--------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEI--------EPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       534 ~~~~~~-~~--------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      ++++++ ..        .| ...++..+...+...|++++|...+++++++        .|....++..++.+|...|++
T Consensus       106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            888776 11        23 3567788888899999999999999999987        666677899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 006627          596 NDVAGVRRVMKEI  608 (638)
Q Consensus       596 ~~A~~~~~~~~~~  608 (638)
                      ++|.+++++..+.
T Consensus       186 ~~A~~~~~~~l~~  198 (283)
T 3edt_B          186 QDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.95  E-value=7.3e-09  Score=92.45  Aligned_cols=158  Identities=9%  Similarity=-0.029  Sum_probs=119.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHH----------------HHHHHhccCcHHHHHHHHHHHhhhcCCC
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPN-GITFIG----------------LLNACSHAGLVTEGKSVFDKMVHGLGLV  510 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~  510 (638)
                      ....+...|++++|+..|++..+.  .|+ ...+..                +..++...|++++|...|++..+.  .+
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p   85 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP   85 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence            344556677777777777777765  343 345555                888999999999999999999873  34


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC--hHHHHHHHHHHhccCCCCcchHHHHH
Q 006627          511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN--PSMGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      .+...+..+..++...|++++|++.|+++ ...| +..++..+...+...|+  .+.+...++++....|. ...+..++
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g  164 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG  164 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence            46788999999999999999999999998 4555 57888888888766553  45667777777654443 23567789


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          587 NIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       587 ~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .++...|++++|+..|++..+..+
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCC
Confidence            999999999999999999876554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.92  E-value=6.9e-09  Score=83.82  Aligned_cols=102  Identities=8%  Similarity=0.036  Sum_probs=90.8

Q ss_pred             CCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          509 LVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       509 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      +.|+. ..+...+..+.+.|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            44543 56778899999999999999999987 4455 688899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          586 SNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       586 ~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |.+|...|++++|++.|++..+..+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999876544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=1.9e-08  Score=95.94  Aligned_cols=218  Identities=11%  Similarity=0.007  Sum_probs=142.1

Q ss_pred             cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc-cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627          354 AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE-AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR  432 (638)
Q Consensus       354 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  432 (638)
                      .|++++|.+++++..+.. +..          +.. .++++.|...+...               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            455667777776654421 110          111 35566665555543               334556666666666


Q ss_pred             HHHcCCCC-----C----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhccCcHHHHH
Q 006627          433 LFSEAIYR-----D----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPN--GITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       433 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~  497 (638)
                      .|.+...-     +    ..+|+.+...|...|++++|+..+++..+.    | .|.  ..++..+...|.. |++++|+
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            66543311     1    236667777788888888888888876543    2 222  2567788888888 9999999


Q ss_pred             HHHHHHhhhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HhhHHHHHHHHhhcCChHHHH
Q 006627          498 SVFDKMVHGLGLVP----KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL---RPN----MIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       498 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      +.|++..+...-..    ...++..+..++.+.|++++|++.++++ ..   .++    ...+..++..+...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99998875321111    1357788899999999999999999887 21   111    235566667777889999999


Q ss_pred             HHHHHHhccCCCCcch-----HHHHHHHHHhcCCHHHHHHH
Q 006627          566 IAATQILEIEPQNYGY-----NVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  601 (638)
                      ..+++++ ++|.....     ...++.++ ..|+.+.+.++
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999999 99975433     33455545 67787776663

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.91  E-value=2.4e-08  Score=89.47  Aligned_cols=129  Identities=12%  Similarity=-0.088  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      .+..+...+...|++++|+..+++.    +.|+...+..+..++...|++++|.+.+++..+.  .+.+...+..+..++
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            4455667777888888888888776    3667778888888888888888888888888763  344567777888888


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-C----------------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          524 GRAGLLDEAHEMIKSM-PLRP-N----------------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      ...|++++|.+.++++ ...| +                ...+..+...+...|++++|...++++++++|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8888888888888776 2222 1                2667777788888888888888888888888876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=3.1e-09  Score=88.78  Aligned_cols=97  Identities=8%  Similarity=0.040  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344555566666666666666666665 2233 45666666666777777777777777777777777777777777777


Q ss_pred             hcCCHHHHHHHHHHHhhcC
Q 006627          591 VANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~~  609 (638)
                      ..|++++|+..|++..+..
T Consensus       101 ~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHC
Confidence            7777777777777665443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=1.9e-08  Score=94.78  Aligned_cols=136  Identities=6%  Similarity=-0.083  Sum_probs=114.7

Q ss_pred             CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627          474 KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL  552 (638)
Q Consensus       474 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~  552 (638)
                      +.+...+..+...+...|++++|...|+++.+.  .+.+...+..+..++.+.|++++|...++++ ...|+........
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            445567888888999999999999999999873  3446678889999999999999999999998 4567654433333


Q ss_pred             -HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          553 -AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       553 -~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                       ..+...++.+.|...++++++.+|+++..+..++.+|...|++++|+..++++.+..+.
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT  251 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence             34667788999999999999999999999999999999999999999999999876554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.90  E-value=1.3e-08  Score=96.99  Aligned_cols=197  Identities=8%  Similarity=-0.076  Sum_probs=150.6

Q ss_pred             ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627          388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  467 (638)
                      ..|++++|.+++++..+.. +..         .+...+++++|...|..           ....|...|++++|...+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            4578889999998887643 111         01115788999888765           46678889999999999998


Q ss_pred             HHHcCC---CC-c-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627          468 MERSGV---KP-N-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKS  538 (638)
Q Consensus       468 m~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  538 (638)
                      ..+...   .+ . ..+|..+..+|...|++++|...+++..+-+   +..+ ....+..+..+|.. |++++|++.+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            765311   11 1 3578888899999999999999999887532   1111 13567788889988 999999999988


Q ss_pred             C-CCCC-------CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCHHHHHHHHHH
Q 006627          539 M-PLRP-------NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY------GYNVLMSNIYAVANRWNDVAGVRRV  604 (638)
Q Consensus       539 ~-~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~  604 (638)
                      + ...|       ...++..+...+...|++++|+..+++++++.|++.      ..+..++.++...|++++|...|++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 1111       146778888999999999999999999999877653      2677788889999999999999998


Q ss_pred             Hh
Q 006627          605 MK  606 (638)
Q Consensus       605 ~~  606 (638)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.88  E-value=1.8e-07  Score=88.49  Aligned_cols=160  Identities=7%  Similarity=-0.104  Sum_probs=122.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCC-CCcHH----HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHH
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGV-KPNGI----TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGC  518 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~  518 (638)
                      .+..+...|++++|..++++..+... .|+..    .+..+...+...|++++|...++++.+...-.++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            45677888999999999998886421 22221    2334666777888999999999999873122223    236888


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-----C---CCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHH
Q 006627          519 MVDLLGRAGLLDEAHEMIKSMP-----L---RPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNV  583 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~  583 (638)
                      ++.+|...|++++|.++++++-     .   .|. ..++..+...|...|++++|...+++++++.+..      +..|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999988771     1   111 3477888899999999999999999999876543      56899


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHhh
Q 006627          584 LMSNIYAVAN-RWNDVAGVRRVMKE  607 (638)
Q Consensus       584 ~l~~~~~~~g-~~~~A~~~~~~~~~  607 (638)
                      .+|.+|.+.| ++++|.+.+++..+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            9999999999 57999999988754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.87  E-value=2.3e-08  Score=104.60  Aligned_cols=146  Identities=10%  Similarity=-0.017  Sum_probs=72.0

Q ss_pred             CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHH
Q 006627          390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFV  466 (638)
Q Consensus       390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~  466 (638)
                      |++++|...+++..+.. +.+...+..+...|...|++++|.+.+++...   .+...+..+..++...|++++|.+.++
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45555666665555443 33455555566666666666666666655442   234455555566666666666666666


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 006627          467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLLDEAHEMIKSM  539 (638)
Q Consensus       467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  539 (638)
                      +..+.. +.+...+..+..++...|++++|.+.++++.+.  .+.+...+..+..++...   |+.++|.+.++++
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            665542 333455555666666666666666666665542  222344555555666665   6666666666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.85  E-value=3.6e-08  Score=84.20  Aligned_cols=128  Identities=7%  Similarity=-0.052  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+..+...+...|++++|...+++..+.  .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34566667777788888888888887762  3345667777788888888888888888776 3333 567888888999


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI--YAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~  607 (638)
                      ...|++++|...++++++++|+++..+..++.+  +...|++++|+..++...+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999999999998888555555  8889999999999987754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.83  E-value=5.6e-08  Score=92.03  Aligned_cols=162  Identities=6%  Similarity=-0.120  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--CCCC--hhH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-----ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG--LVPK--IEH  515 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~  515 (638)
                      +...+..+...|++++|.+.+++..+.......     ..+..+...+...|++++|...+++..+...  ..+.  ...
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            344566777888888888888887765322111     2234455667788899999999998875211  1111  347


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC------Ccc
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM----PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ------NYG  580 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~  580 (638)
                      ++.++..|...|++++|..+++++    ...|+     ..++..+...|...|++++|...+++++++.++      -+.
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            888889999999999999998876    11222     257788889999999999999999999886543      156


Q ss_pred             hHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006627          581 YNVLMSNIYAVANRWNDV-AGVRRVMK  606 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A-~~~~~~~~  606 (638)
                      .|..+|.+|...|++++| ..++++..
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            788999999999999999 77777664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.82  E-value=1.3e-08  Score=88.19  Aligned_cols=126  Identities=11%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HHhcCCh--
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-LGRAGLL--  529 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--  529 (638)
                      ...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+.  .+.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence            34566666777776666653 345566666666667777777777777766652  22344455555555 5556665  


Q ss_pred             HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch
Q 006627          530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY  581 (638)
Q Consensus       530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  581 (638)
                      ++|...++++ ...| +...+..+...+...|++++|...++++++++|+++..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            6666666655 2233 34555556666666666666666666666666665443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.81  E-value=1e-07  Score=86.10  Aligned_cols=183  Identities=11%  Similarity=-0.008  Sum_probs=129.4

Q ss_pred             hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC-ch---hHH
Q 006627          376 EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAI--YRD-IC---MWN  446 (638)
Q Consensus       376 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~---~~~  446 (638)
                      ...+..+...+...|++++|...|+.+.+.. |.+   ...+..+..+|.+.|++++|...|++..  .|+ ..   .+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445556677889999999999999999864 222   3567788999999999999999999876  332 22   444


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627          447 AMMAGYGM------------------HGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGL  507 (638)
Q Consensus       447 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  507 (638)
                      .+..++..                  .|++++|+..|+++.+.  .|+. .........          ..+...+..  
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~~--  148 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLAK--  148 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHHH--
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHHH--
Confidence            45555543                  57899999999999976  4544 222221110          011111111  


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                             ....+...|.+.|++++|+..++++ ...|+    ...+..+..++...|+.++|...++++....|++..
T Consensus       149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                   1234667888999999999999887 33443    356788889999999999999999999999988654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.81  E-value=9.4e-09  Score=96.48  Aligned_cols=191  Identities=9%  Similarity=-0.091  Sum_probs=117.2

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC  487 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  487 (638)
                      ...+..+...+.+.|++++|...|++..  .| +...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3444555566666666666666666544  22 45566666777777777777777777776643 33456777777778


Q ss_pred             hccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHH
Q 006627          488 SHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEI  566 (638)
Q Consensus       488 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~  566 (638)
                      ...|++++|...++++.+.   .|+. ..+...+....+..+...... .......++......+..  ...|+.++|..
T Consensus        83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~  156 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR--LIAAERERELE  156 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH--HHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH--HHHHHHHHHHH
Confidence            8888888888888777652   1211 011111111111111111111 222222334333333322  23688999999


Q ss_pred             HHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhc
Q 006627          567 AATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEI  608 (638)
Q Consensus       567 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  608 (638)
                      .++++++++|++......+..++.+. +++++|.++|+++.+.
T Consensus       157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999888888888888777 7899999999988653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.81  E-value=4.2e-06  Score=84.85  Aligned_cols=369  Identities=11%  Similarity=-0.034  Sum_probs=193.8

Q ss_pred             hCC-CchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC-hH
Q 006627          149 RGG-LPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN-LA  226 (638)
Q Consensus       149 ~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~  226 (638)
                      +.| +++.|..+|+.+..  ..|.              ++.+.+..+|...+...+    +...|...+....+.++ .+
T Consensus         6 ~~~~~i~~aR~vyer~l~--~~P~--------------~~~e~~~~iferal~~~p----s~~LW~~Y~~f~~~~~~~~~   65 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARR--LYMS--------------KDYRSLESLFGRCLKKSY----NLDLWMLYIEYVRKVSQKKF   65 (493)
T ss_dssp             ------CCHHHHHHHHHH--HHHT--------------TCHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHHHC----
T ss_pred             HcCcchHHHHHHHHHHHH--HCCC--------------CCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCchHH
Confidence            345 37777777777765  2444              777777777777776432    56677666666655543 23


Q ss_pred             HHHHHHhccCC------CCcccHHHHHHHHH----hCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHH
Q 006627          227 YAKQLFNRLNQ------NSVVSWTVMISGYI----RCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGK  295 (638)
Q Consensus       227 ~A~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~  295 (638)
                      ....+|+....      .+...|...+..+.    ..++.+.+.++|+...... ..+. ..|..... +....+...+.
T Consensus        66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~  143 (493)
T 2uy1_A           66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGK  143 (493)
T ss_dssp             CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHH
Confidence            33444443321      23345555554433    2345666666776666521 1111 11111111 11111111122


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC----CCchhHHHHHHHHHhcC--C-----HHHHHHHH
Q 006627          296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS----KDVMIWNAVISAYAQAH--C-----IDKAFELF  364 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~a~~~~  364 (638)
                      .++....                     +.+..|..+++.+..    .+...|...+.--...+  -     .+.+..+|
T Consensus       144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y  202 (493)
T 2uy1_A          144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH  202 (493)
T ss_dssp             HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence            1111110                     111222222221110    12234444433322111  0     34566778


Q ss_pred             HHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH-HHHHHcCC-----
Q 006627          365 IHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGA-YRLFSEAI-----  438 (638)
Q Consensus       365 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~-----  438 (638)
                      +++.... +.+...|...+.-+.+.|+.+.|..++++....  |.+...+..    |....+.++. ..+.+...     
T Consensus       203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~  275 (493)
T 2uy1_A          203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE  275 (493)
T ss_dssp             HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence            8776542 444566666667777788888888888888887  444333322    2221111111 11221110     


Q ss_pred             -------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHHHhhhcCCC
Q 006627          439 -------YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-AGLVTEGKSVFDKMVHGLGLV  510 (638)
Q Consensus       439 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~  510 (638)
                             ......|...+....+.++.+.|..+|++. ... .++...|...+..-.. .++.+.|..+|+...+.++  
T Consensus       276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--  351 (493)
T 2uy1_A          276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--  351 (493)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--
T ss_pred             hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--
Confidence                   001245666666666777888899999888 321 2344444433322222 3368889999998887532  


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      .++..+...++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+..+++++.+
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            234456667777788899999999998873  2467777777777788998888888888875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.81  E-value=4.9e-08  Score=79.70  Aligned_cols=117  Identities=9%  Similarity=-0.000  Sum_probs=85.7

Q ss_pred             cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 006627          476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLA  553 (638)
Q Consensus       476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  553 (638)
                      +...+..+...+...|++++|.+.++++.+  ..+.+...+..+..++...|++++|.+.++++ ...| +...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            345566667777777777777777777764  22335566667777777777777777777766 2233 4677777888


Q ss_pred             HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      .+...|++++|...++++++.+|++...+..++.++...|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            88888888999999999988888888888888888877664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.80  E-value=7.3e-08  Score=83.29  Aligned_cols=156  Identities=8%  Similarity=-0.111  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-Hhc
Q 006627          414 KTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSH  489 (638)
Q Consensus       414 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~  489 (638)
                      +..+...+...|++++|...|++...   .+...+..+...+...|++++|+..+++.....  |+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            34445556666777777777766652   244566666666777777777777776665442  333322222111 112


Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhhHHHHHHHHhhcCChHHHH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN---MIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      .+....|...+++..+.  .+.+...+..+..++...|++++|...++++ ...|+   ...+..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            12223456666666652  2334566677777777777777777777766 44443   446677777777778877777


Q ss_pred             HHHHHHhc
Q 006627          566 IAATQILE  573 (638)
Q Consensus       566 ~~~~~~~~  573 (638)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=4.2e-06  Score=78.28  Aligned_cols=228  Identities=7%  Similarity=-0.038  Sum_probs=167.9

Q ss_pred             CCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCcccHHHHHHHHH----Hhc---
Q 006627          355 HCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAG--ALEMGKWLHTYIEKQGLEVDVILKTALVDMY----AKC---  424 (638)
Q Consensus       355 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---  424 (638)
                      ...++|+.+++.+...  .|+.. .++.--..+...+  +++++...++.+.... |-+..+++.-...+    ...   
T Consensus        47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence            3346788888887664  45443 3444444555566  8888888888888765 55555665554444    444   


Q ss_pred             CCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc------H
Q 006627          425 GDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE--EALIFFVDMERSGVKPNGITFIGLLNACSHAGL------V  493 (638)
Q Consensus       425 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~  493 (638)
                      +++++++++++.+.   ..+..+|+.-...+.+.|.++  ++++.++++.+.. +-|...|..-...+.+.+.      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            67888888888877   335567777777777788888  9999999999875 4566777776666666666      8


Q ss_pred             HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHhhHHHHHHHHhhcCChHHHHHH
Q 006627          494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE-AHEMIKSM-PL----RPNMIVWGALLAASKLHKNPSMGEIA  567 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~A~~~  567 (638)
                      +++++.+++++.  -.+-|...|+.+...+.+.|+..+ +.++..+. ..    ..++..+..+...+.+.|+.++|.+.
T Consensus       203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            999999999987  345577888888888888888555 55577766 22    33678888899999999999999999


Q ss_pred             HHHHhc-cCCCCcchHHHHHHH
Q 006627          568 ATQILE-IEPQNYGYNVLMSNI  588 (638)
Q Consensus       568 ~~~~~~-~~p~~~~~~~~l~~~  588 (638)
                      ++.+.+ ++|.....|...+..
T Consensus       281 ~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHhccChHHHHHHHHHHhh
Confidence            999996 899988888766543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.79  E-value=2.2e-07  Score=83.13  Aligned_cols=129  Identities=12%  Similarity=-0.032  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 006627          414 KTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLV  493 (638)
Q Consensus       414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~  493 (638)
                      +..+...+...|++++|...|++...++...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            45566778889999999999999988888899999999999999999999999998874 55678899999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 006627          494 TEGKSVFDKMVHGLGLVPK----------------IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM  545 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  545 (638)
                      ++|.+.++++.+.  .+.+                ...+..+..++...|++++|.+.++++ ...|+.
T Consensus        88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999873  2222                267888999999999999999999987 566654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.78  E-value=2.1e-08  Score=83.13  Aligned_cols=95  Identities=8%  Similarity=-0.045  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      ..+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            33444555556666666666666555 2233 455666666666666666667777777766667666666666777777


Q ss_pred             cCCHHHHHHHHHHHhhc
Q 006627          592 ANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       592 ~g~~~~A~~~~~~~~~~  608 (638)
                      .|++++|++.|++..+.
T Consensus        99 ~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           99 LGDLDGAESGFYSARAL  115 (142)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777776666666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.77  E-value=5.1e-08  Score=79.24  Aligned_cols=117  Identities=10%  Similarity=-0.005  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA  554 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  554 (638)
                      ...+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            356667777777888888888888887763  3345667777788888888888888888776 3334 46778888889


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      +...|++++|...++++++.+|+++..+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999888875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=8.4e-08  Score=77.17  Aligned_cols=115  Identities=19%  Similarity=0.112  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHH
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAA  554 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~  554 (638)
                      ...+..+...+...|++++|.+.++++.+.  .+.+...+..+..++.+.|++++|..+++++ .. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            355666677777777777777777777653  2344566677777777778888887777776 22 3356777788888


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      +...|++++|...++++++.+|+++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888999999999999999999998888888888876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.76  E-value=1.5e-06  Score=88.13  Aligned_cols=352  Identities=10%  Similarity=-0.014  Sum_probs=203.2

Q ss_pred             CChHHHHHHHhccCC--CCcccHHHHHHHHHhCCC-hHHHHHHHHHHHHc-CccC-ChHhHHHHHHHhcc----cCChhh
Q 006627          223 GNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNE-INEGVRLFAEMIEE-NVFP-SEITILSLIIECGF----VGGLQL  293 (638)
Q Consensus       223 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~  293 (638)
                      |+++.+..+|++...  |++..|...+....+.+. .+....+|+..... |..| +...|...+.-+..    .++.+.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            788888888888775  777777777776666553 34556667666553 4333 55566666655432    356677


Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 006627          294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR  373 (638)
Q Consensus       294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  373 (638)
                      +..+|+..+......-..+|...... ........+..++.+               .  .+.+..|..+++++...--.
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~---------------~--~~~y~~ar~~y~~~~~~~~~  169 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD---------------T--LPIFQSSFQRYQQIQPLIRG  169 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH---------------H--hHHHHHHHHHHHHHHHHHhh
Confidence            77777777752111111122211111 111111222222211               1  12234444444444321001


Q ss_pred             CChhhHHHHHHHHhcc--C-----chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-C-Cchh
Q 006627          374 PNEVTMVGLLSLCTEA--G-----ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-R-DICM  444 (638)
Q Consensus       374 p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~  444 (638)
                      .+...|...+.--...  +     ..+.+..+++++.... +.+..++...+..+.+.|+++.|..++++... | +...
T Consensus       170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l  248 (493)
T 2uy1_A          170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL  248 (493)
T ss_dssp             CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred             ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHH
Confidence            1223444444332221  1     1345677888888764 66678888888888999999999999987553 3 2222


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSG---------VKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK  512 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~  512 (638)
                      |.    .|......++.   ++.+.+.-         ..+   ....|...+....+.++.+.|..+|+++ +. . ..+
T Consensus       249 ~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~  318 (493)
T 2uy1_A          249 SL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVG  318 (493)
T ss_dssp             HH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCC
T ss_pred             HH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCC
Confidence            22    22222222222   23332211         011   1244666677777788899999999999 42 2 234


Q ss_pred             hhHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRA-GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       513 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      ...|...+..-.+. ++.+.|..+|+.. ..-| ++..|...+......|+.+.|+.+++++    +.....|......-
T Consensus       319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE  394 (493)
T 2uy1_A          319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE  394 (493)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            44554333333333 4699999999887 2123 3556666777778899999999999998    34567788888888


Q ss_pred             HhcCCHHHHHHHHHHHhh
Q 006627          590 AVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~  607 (638)
                      ...|+.+.+..+++++.+
T Consensus       395 ~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          395 FMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            888999999998888864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=5.7e-08  Score=93.71  Aligned_cols=126  Identities=10%  Similarity=-0.041  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----------------IEHYGCMVDLLGRAGLLDEAHEMIKSM-P  540 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  540 (638)
                      ..+..+...+.+.|++++|...|+++.+.   .|+                ...|..+..++.+.|++++|+..++++ .
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555555666666666666665542   121                367788888888899999999988887 3


Q ss_pred             CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHh
Q 006627          541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA-GVRRVMK  606 (638)
Q Consensus       541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~  606 (638)
                      ..| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|. ..+++|.
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 57888899999999999999999999999999999999999999999999999994 4566553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.73  E-value=3.7e-08  Score=78.85  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      .+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3455677888899999999999887 4445 6788889999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCC
Q 006627          593 NRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       593 g~~~~A~~~~~~~~~~~~  610 (638)
                      |++++|+..+++..+..+
T Consensus        99 g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999998876544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.72  E-value=1.2e-07  Score=78.93  Aligned_cols=105  Identities=7%  Similarity=-0.020  Sum_probs=90.0

Q ss_pred             CCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHH
Q 006627          473 VKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWG  549 (638)
Q Consensus       473 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  549 (638)
                      +.|+. ..+..+...+.+.|++++|...|+++.+  -.+.+...|..+..++...|++++|++.|+++ ...| ++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            34544 5788888889999999999999999987  33456788889999999999999999999988 4455 578889


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          550 ALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .+..++...|++++|+..|++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.72  E-value=7e-08  Score=78.04  Aligned_cols=94  Identities=7%  Similarity=-0.068  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      .+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            3444555555566666666665554 2223 3556666666666667777777777777777777666677777777777


Q ss_pred             CCHHHHHHHHHHHhhc
Q 006627          593 NRWNDVAGVRRVMKEI  608 (638)
Q Consensus       593 g~~~~A~~~~~~~~~~  608 (638)
                      |++++|...+++..+.
T Consensus        86 ~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           86 KEYASALETLDAARTK  101 (126)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHh
Confidence            7777777766666543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.70  E-value=6.4e-08  Score=76.16  Aligned_cols=100  Identities=12%  Similarity=-0.023  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNI  588 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~  588 (638)
                      ...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+  ++..+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            345566677777778888888877776 2233 5677888888889999999999999999999999  99999999999


Q ss_pred             HHhc-CCHHHHHHHHHHHhhcCCcC
Q 006627          589 YAVA-NRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       589 ~~~~-g~~~~A~~~~~~~~~~~~~~  612 (638)
                      |... |++++|.+.+++..+..+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999 99999999999887766544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.69  E-value=5.4e-08  Score=81.12  Aligned_cols=110  Identities=9%  Similarity=-0.100  Sum_probs=89.0

Q ss_pred             CCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHH
Q 006627          474 KPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGA  550 (638)
Q Consensus       474 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  550 (638)
                      .|+ ...+..+...+...|++++|...|+++..  ..+.+...|..+..++...|++++|++.++++ ...| ++..+..
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            443 35677778888889999999999998876  33446777888888999999999999999887 3444 5678888


Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      +..++...|++++|+..++++++++|+++......
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  129 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELS  129 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence            89999999999999999999999999987764443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.68  E-value=1.4e-08  Score=89.87  Aligned_cols=129  Identities=8%  Similarity=-0.080  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP--------------KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP  543 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  543 (638)
                      .+..+...+...|++++|...|++..+...-.|              ....+..+..++.+.|++++|+..++++ ...|
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            344444555555666666666665554211111              0256777888888889999998888877 3344


Q ss_pred             -CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 006627          544 -NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA-GVRRVMKE  607 (638)
Q Consensus       544 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  607 (638)
                       +...+..+..++...|++++|+..++++++++|+++.++..++.++...|+.+++. ..+..|-.
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             57788889999999999999999999999999999999999999999999998888 45666543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.68  E-value=9.1e-07  Score=78.93  Aligned_cols=175  Identities=12%  Similarity=-0.109  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-CCchhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 006627          395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-RDICMWNAMMAGYGMHG----CGEEALIFFVDME  469 (638)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~  469 (638)
                      |.+.|+...+.|   ++..+..+...|...+++++|..+|++... .++..+..|...|.. +    ++++|+..|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            344444444432   344455555566666666666666665442 244555556666665 5    7888888888887


Q ss_pred             HcCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHhC-
Q 006627          470 RSGVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLV-PKIEHYGCMVDLLGR----AGLLDEAHEMIKSM-  539 (638)
Q Consensus       470 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-  539 (638)
                      +.|   +...+..+...|..    .+++++|.++|++..+. +.. ..+..+..|..+|..    .+++++|.++|++. 
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            654   45566777777776    78899999999888752 221 126677788888877    78899999999887 


Q ss_pred             CCCCCHhhHHHHHHHHhhc-C-----ChHHHHHHHHHHhccCCC
Q 006627          540 PLRPNMIVWGALLAASKLH-K-----NPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       540 ~~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p~  577 (638)
                      ...+++..+..+...|... |     +.++|...++++.+..+.
T Consensus       157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            3334566777777777643 3     889999999999887543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=1.7e-07  Score=85.48  Aligned_cols=192  Identities=9%  Similarity=-0.116  Sum_probs=95.7

Q ss_pred             ccCchHHHHHHHHHHHHhCCCCcccHHHHH-------HHHHHhcCCHHHHHHHHHcCCCC---------C----------
Q 006627          388 EAGALEMGKWLHTYIEKQGLEVDVILKTAL-------VDMYAKCGDVNGAYRLFSEAIYR---------D----------  441 (638)
Q Consensus       388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~---------~----------  441 (638)
                      ..++...|.+.|.++.+.. |-....|..+       ...+.+.++..++...+..-..-         +          
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            4677888888888887765 4455556555       34444444444444444433211         1          


Q ss_pred             -----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hh
Q 006627          442 -----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IE  514 (638)
Q Consensus       442 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~  514 (638)
                           ...+..+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+...+. . .|.  ..
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~  172 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA  172 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence                 011223444555556666666666555443  243333334444455556666666655544321 0 111  12


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSMP---LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      .+..+..++.+.|++++|+..|++..   ..|.  ...+.....++.+.|+.++|...|+++.+.+|+ +.+...|
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            34445555555555555555555551   1122  234444445555555555555555555555555 4444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.65  E-value=1.2e-07  Score=80.74  Aligned_cols=111  Identities=11%  Similarity=-0.045  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 006627          476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLA  553 (638)
Q Consensus       476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  553 (638)
                      +...+..+...+...|++++|.+.|++..+.  .+.+...+..+..++.+.|++++|+..++++ ...| +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4567888889999999999999999999873  3446788889999999999999999999988 4445 5788899999


Q ss_pred             HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      ++...|++++|+..++++++++|+++..+...+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            99999999999999999999999998866655433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.65  E-value=1.9e-07  Score=80.70  Aligned_cols=124  Identities=6%  Similarity=0.054  Sum_probs=101.3

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH-HhhcCCh--
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA-SKLHKNP--  561 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--  561 (638)
                      +...|++++|...+++..+.  .+.+...+..+..++...|++++|...++++ ...| +...+..+... +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            45678899999999998863  3456788889999999999999999999987 3334 56777788888 7788998  


Q ss_pred             HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627          562 SMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK  612 (638)
Q Consensus       562 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  612 (638)
                      ++|...++++++.+|+++..+..++.+|...|++++|...++++.+..+..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999999999999987766543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=8.8e-08  Score=77.44  Aligned_cols=94  Identities=11%  Similarity=-0.028  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc-------hHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG-------YNVLM  585 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l  585 (638)
                      .+..++..+.+.|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++++|++..       +|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            4555667777777777777777766 3344 4667777778888888888888888888888776543       56667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc
Q 006627          586 SNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       586 ~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      |.+|...|++++|++.|++..+.
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Confidence            77888888888888888877553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.63  E-value=2.4e-07  Score=76.05  Aligned_cols=96  Identities=8%  Similarity=0.026  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            344455555555555555555555544 2222 34555556666666666666666666666666666666666666666


Q ss_pred             hcCCHHHHHHHHHHHhhc
Q 006627          591 VANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~  608 (638)
                      ..|++++|+..+++..+.
T Consensus        89 ~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHH
Confidence            666666666666666543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=3.8e-07  Score=83.20  Aligned_cols=190  Identities=10%  Similarity=-0.026  Sum_probs=121.9

Q ss_pred             hcCCHHHHHHHHHHHHHcCcCCC-hhhHHHH-------HHHHhccCchHHHHHHHHHHHHhCCCCc--------------
Q 006627          353 QAHCIDKAFELFIHMKVSKVRPN-EVTMVGL-------LSLCTEAGALEMGKWLHTYIEKQGLEVD--------------  410 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------  410 (638)
                      ..++...|.+.|.+....  .|+ ...|..+       ...+...++...+...++...+  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            578888999999888765  343 3455555       2333333334433333333222  2221              


Q ss_pred             --------ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HH
Q 006627          411 --------VILKTALVDMYAKCGDVNGAYRLFSEAIY--RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN--GI  478 (638)
Q Consensus       411 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~  478 (638)
                              ....-.+...+...|++++|.++|+.+..  |+......+...+.+.+++++|+..|+...... .|.  ..
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~  172 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA  172 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence                    12233456677888999999999988763  322255555667788889999999887554321 121  23


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhH
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVW  548 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~  548 (638)
                      .+..+..++...|++++|+..|++.... ...|.  .........++.+.|+.++|...|+++ ...|+...+
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~  244 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA  244 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH
Confidence            6777788888899999999999988752 22253  345667778888889999999999887 445653333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=5.3e-07  Score=71.47  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+..+...+...|++++|...+++....  .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34444555555556666666666655542  2223444555555555555555555555554 2222 345555566666


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      ...|++++|...++++++.+|+++..+..++.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            666666666666666666666666555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.61  E-value=3.2e-07  Score=74.77  Aligned_cols=100  Identities=7%  Similarity=-0.026  Sum_probs=90.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      .+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++.+|+++..+..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            35577888999999999999999999987 4455 678888999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCC
Q 006627          589 YAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       589 ~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |...|++++|.+.+++..+..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999876543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.61  E-value=4.3e-06  Score=79.01  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=29.0

Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      +.++.++..|+.+|...|+.++|.++++.+.+.
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            567788999999999999999999999998643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=3.2e-07  Score=72.76  Aligned_cols=99  Identities=11%  Similarity=0.067  Sum_probs=88.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      +...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3456778888999999999999999988 3344 6788888999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCC
Q 006627          590 AVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...|++++|.+.+++..+..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHhhHHHHHHHHHHHHHcCC
Confidence            999999999999998876544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.59  E-value=2.8e-07  Score=76.21  Aligned_cols=109  Identities=8%  Similarity=-0.090  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+..+...+.+.|++++|...|+++..  ..+.+...|..+..++.+.|++++|+..++++ ...| ++..+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4566667777888888888888888876  23446677778888888888888888888877 3344 567788888899


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      ...|++++|...++++++++|+++........+
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999988776655444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.59  E-value=3.5e-07  Score=73.86  Aligned_cols=112  Identities=8%  Similarity=-0.093  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS  555 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  555 (638)
                      ..+..+...+.+.|++++|...|++..+.  .+.+...+..+..++.+.|++++|+..++++ ...| +...+..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45666667777788888888888887762  3345677777888888888888888888776 3344 477888888899


Q ss_pred             hhcCChHHHHHHHHHHhccC------CCCcchHHHHHHHHHh
Q 006627          556 KLHKNPSMGEIAATQILEIE------PQNYGYNVLMSNIYAV  591 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~  591 (638)
                      ...|++++|...++++++++      |+++.++..+..+..+
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999      8888888777766543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.58  E-value=3.5e-06  Score=79.51  Aligned_cols=158  Identities=9%  Similarity=-0.064  Sum_probs=114.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCC---c------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHH
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRD---I------CMWNAMMAGYGMHGCGEEALIFFVDMERSGVK-PN----GITFIG  482 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~  482 (638)
                      .+..+...|++++|..++++.....   .      ..+..+...+...+++++|+..+++..+.... ++    ..++..
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3566778888888888887755321   1      12334556666777999999999998874222 22    236888


Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HhhHH
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGL----GLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN-MIVWG  549 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~  549 (638)
                      +..+|...|++++|..+++++.+..    +..+. ..++..++.+|.+.|++++|.++++++       ...+. ..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            8889999999999999999987421    11122 246788889999999999999998876       11222 56788


Q ss_pred             HHHHHHhhcCC-hHHHHHHHHHHhcc
Q 006627          550 ALLAASKLHKN-PSMGEIAATQILEI  574 (638)
Q Consensus       550 ~l~~~~~~~~~-~~~A~~~~~~~~~~  574 (638)
                      .+...+...|+ +++|...+++++++
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            88889999995 59999999999874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=5.4e-07  Score=74.97  Aligned_cols=110  Identities=10%  Similarity=-0.036  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHH
Q 006627          476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWG  549 (638)
Q Consensus       476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  549 (638)
                      +...+..+...+...|++++|.+.|++..+   ..|+    ...+..+..++...|++++|...+++. ...| +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            344555555566666666666666666653   2333    344555555555555555555555544 2222 344455


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      .+...+...|++++|...++++++++|+++..+..+..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            555555555555555555555555555555544444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.57  E-value=1.7e-06  Score=81.80  Aligned_cols=162  Identities=9%  Similarity=-0.061  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cc------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HH
Q 006627          413 LKTALVDMYAKCGDVNGAYRLFSEAIY--R-DI------CMWNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GI  478 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~  478 (638)
                      .+...+..+...|++++|.+.+.+...  + ..      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            334455667777788888777765431  1 11      1233455566777889999998888775321   122  34


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhh---hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CH
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVH---GLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PL------RP-NM  545 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~  545 (638)
                      ++..+...|...|++++|..+++++.+   ..+..+.  ..++..++.+|...|++++|.+++++. ..      .. -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            788888888999999999999988873   2121121  257788888999999999999998876 11      11 15


Q ss_pred             hhHHHHHHHHhhcCChHHH-HHHHHHHhcc
Q 006627          546 IVWGALLAASKLHKNPSMG-EIAATQILEI  574 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~  574 (638)
                      .++..+...+...|++++| ...+++++++
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6778888889999999999 7778888763

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=5e-07  Score=72.46  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+...+...|++++|.+.++++ ... .+..++..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            467788889999999999999999988 333 357788889999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhcCC
Q 006627          591 VANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..|++++|..+++++.+..+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT
T ss_pred             HhcCHHHHHHHHHHHHHhCC
Confidence            99999999999999876543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.55  E-value=9.4e-07  Score=78.19  Aligned_cols=61  Identities=3%  Similarity=-0.151  Sum_probs=35.2

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCC--C----cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQ--N----YGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+..+...+...|++++|...+++++++.+.  +    ...+..++.++...|++++|.+.+++..+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3444555555666666666666666553221  1    12345667777777777777777666543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.54  E-value=6.7e-07  Score=76.10  Aligned_cols=96  Identities=9%  Similarity=-0.042  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344555555566666666666666555 2233 44555555566666666666666666666666666666666666666


Q ss_pred             hcCCHHHHHHHHHHHhhc
Q 006627          591 VANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       591 ~~g~~~~A~~~~~~~~~~  608 (638)
                      ..|++++|+..|++..+.
T Consensus        91 ~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHh
Confidence            666666666666655443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.52  E-value=4e-07  Score=73.78  Aligned_cols=61  Identities=8%  Similarity=-0.044  Sum_probs=31.3

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+..+...+...|++++|...++++++..|++   +.++..++.+|...|++++|...++++.+
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444444555555555555555555555554   34455555555555555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.50  E-value=3.8e-07  Score=74.85  Aligned_cols=61  Identities=10%  Similarity=-0.104  Sum_probs=49.9

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEI-------EPQNYGYN----VLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .|..+..++...|++++|+..+++++++       +|+++..|    ...|.++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6677777777777888887777777777       88888888    8888888888898888888888765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.49  E-value=8.3e-07  Score=71.88  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=88.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4566778888999999999999999987 3334 6788888999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCC
Q 006627          590 AVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...|++++|.+.+++..+..+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST
T ss_pred             HHhCCHHHHHHHHHHHHhcCc
Confidence            999999999999999876544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=1.6e-06  Score=72.03  Aligned_cols=100  Identities=11%  Similarity=-0.007  Sum_probs=80.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      .+...+..+...+...|++++|.+.+++. ...|+    ...+..+...+...|++++|+..++++++.+|+++..+..+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            35567777788888888888888888877 55666    56777777888888888888888888888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          586 SNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       586 ~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +.+|...|++++|...+++..+..+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            8888888888888888888765443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.48  E-value=1.1e-06  Score=88.51  Aligned_cols=95  Identities=16%  Similarity=0.032  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...|..+..++.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467778888888999999999998887 3344 57888899999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHH-HHHHHhh
Q 006627          591 VANRWNDVAG-VRRVMKE  607 (638)
Q Consensus       591 ~~g~~~~A~~-~~~~~~~  607 (638)
                      ..|++++|.+ .+++|-.
T Consensus       397 ~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            9999998876 4565543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.47  E-value=9.1e-07  Score=72.52  Aligned_cols=115  Identities=6%  Similarity=-0.111  Sum_probs=86.2

Q ss_pred             CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHH
Q 006627          475 PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALL  552 (638)
Q Consensus       475 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  552 (638)
                      .+...+..+...+...|++++|...|++..+.  .+.+...+..+..++...|++++|...++++ ...| +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45567777777788888888888888887763  3345667777888888888888888888776 3334 567888888


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCC-----CcchHHHHHHHHHh
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQ-----NYGYNVLMSNIYAV  591 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~  591 (638)
                      ..+...|++++|+..+++++++.|+     +..+...+..+..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998887     55555555555433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.45  E-value=1.3e-07  Score=75.13  Aligned_cols=82  Identities=10%  Similarity=-0.001  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHhC-CC---CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          527 GLLDEAHEMIKSM-PL---RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       527 g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      |++++|+..|+++ ..   .| +...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4445555555444 22   13 2345555556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhhc
Q 006627          602 RRVMKEI  608 (638)
Q Consensus       602 ~~~~~~~  608 (638)
                      +++..+.
T Consensus        84 ~~~al~~   90 (117)
T 3k9i_A           84 LLKIIAE   90 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.45  E-value=2.3e-06  Score=72.77  Aligned_cols=127  Identities=10%  Similarity=-0.080  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627          444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL  523 (638)
Q Consensus       444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  523 (638)
                      .+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.  .+.+...+..+..++
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            45556667777788888888888777653 445677777777888888888888888887763  344566777778888


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-CHhhHH--HHHHHHhhcCChHHHHHHHHHHhc
Q 006627          524 GRAGLLDEAHEMIKSM-PLRP-NMIVWG--ALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ...|++++|.+.++++ ...| +...+.  ..+..+...|++++|...+++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            8888888888888776 3333 334443  333336667888888888777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.43  E-value=0.00014  Score=68.66  Aligned_cols=232  Identities=13%  Similarity=0.033  Sum_probs=162.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc-C-C
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAG-ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC-G-D  426 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  426 (638)
                      ....+..++|+++++++...  .|+.. .++.--..+...| .++++..+++.+.... +-+..+++.-.-.+.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            34445567899999888765  45443 4554444555566 5889999999988876 66677777776666666 6 8


Q ss_pred             HHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc---
Q 006627          427 VNGAYRLFSEAIYRD---ICMWNAMMAGYGMHGCGE--------EALIFFVDMERSGVKPNGITFIGLLNACSHAGL---  492 (638)
Q Consensus       427 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---  492 (638)
                      +++++++++.+...+   ..+|+--...+.+.|.++        ++++.++++.+.. +-|...|+.....+.+.+.   
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence            899999999888554   456655555555555555        8999999999875 4567778887777777765   


Q ss_pred             ----HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC------
Q 006627          493 ----VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLL--------------------DEAHEMIKSM-PL------  541 (638)
Q Consensus       493 ----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------  541 (638)
                          ++++++.+++++.  -.+-|...|+.+-..+.+.|+.                    .+..++..++ ..      
T Consensus       220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                6889999998886  3445667777777777766654                    3444444444 21      


Q ss_pred             -CCCHhhHHHHHHHHhhcCChHHHHHHHHHHh-ccCCCCcchHHHHHHH
Q 006627          542 -RPNMIVWGALLAASKLHKNPSMGEIAATQIL-EIEPQNYGYNVLMSNI  588 (638)
Q Consensus       542 -~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~  588 (638)
                       .+++..+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence             2567788888899999999999999999997 7899876666655543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.41  E-value=2.6e-05  Score=73.37  Aligned_cols=117  Identities=11%  Similarity=0.010  Sum_probs=55.5

Q ss_pred             HhcCCHH-HHHHHHHHHHHcCcCCChhh-HHHHHHHHhccCc----------hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          352 AQAHCID-KAFELFIHMKVSKVRPNEVT-MVGLLSLCTEAGA----------LEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       352 ~~~~~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      .+.|.++ +|+.++..+...  .|+..| ++.--..+...+.          ++.+..+++.+.... |-+..+++.-.-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3455544 678888877653  444433 3321112211111          345555555555544 444455554444


Q ss_pred             HHHhcCC--HHHHHHHHHcCCC---CCchhHHHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 006627          420 MYAKCGD--VNGAYRLFSEAIY---RDICMWNAMMAGYGMHGC-GEEALIFFVDMERS  471 (638)
Q Consensus       420 ~~~~~~~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~  471 (638)
                      ++.+.++  +++++.+++.+..   .|..+|+.-...+...|. ++++++.++++.+.
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~  174 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  174 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            4444442  4555555555442   233444444444444444 35555555555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.40  E-value=5.8e-07  Score=86.63  Aligned_cols=151  Identities=7%  Similarity=-0.149  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL  522 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  522 (638)
                      ..+..+...+...|++++|+..|++....  .|+...       +...++.+++...+.           ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence            34555566666677777777777776654  344331       223333443332211           1367788889


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH-HHhcCCHHHHH
Q 006627          523 LGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI-YAVANRWNDVA  599 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~  599 (638)
                      +.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+ ....+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 4445 578889999999999999999999999999999999999999988 44557788888


Q ss_pred             HHHHHHhhcCCcCC
Q 006627          600 GVRRVMKEIRVKKE  613 (638)
Q Consensus       600 ~~~~~~~~~~~~~~  613 (638)
                      ..|++|.+..+...
T Consensus       320 ~~~~~~l~~~p~~~  333 (338)
T 2if4_A          320 EMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------
T ss_pred             HHHHHhhCCCCCCC
Confidence            89998876555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.40  E-value=7.9e-06  Score=72.11  Aligned_cols=27  Identities=15%  Similarity=0.040  Sum_probs=15.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627          548 WGALLAASKLHKNPSMGEIAATQILEI  574 (638)
Q Consensus       548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  574 (638)
                      +..+...+...|++++|...+++++++
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            344455555566666666666665553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.39  E-value=8.5e-07  Score=75.25  Aligned_cols=113  Identities=15%  Similarity=-0.039  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLG----------------LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-  539 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  539 (638)
                      ...+......+.+.|++++|...|++.+....                .+.+...|..+..++.+.|++++|+..++++ 
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34567777788888888888888888775200                0111244555566666666666666666555 


Q ss_pred             CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc-chHHHHHHHH
Q 006627          540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY-GYNVLMSNIY  589 (638)
Q Consensus       540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~  589 (638)
                      ...| +...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            2233 355556666666666666666666666666666655 3444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.39  E-value=2.6e-06  Score=79.68  Aligned_cols=188  Identities=9%  Similarity=-0.092  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHH
Q 006627          377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYG  453 (638)
Q Consensus       377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  453 (638)
                      ..+..+...+...|+++.|...++...+.. +.+...+..+..+|.+.|++++|...+++...   .+...+..+..++.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455556666677777777777666654 44666777777777788888888887777653   24566777777888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          454 MHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      ..|++++|+..+++..+..  |+. ..+...+....+   ...+... ...... ..+++......+...  ..|+.++|
T Consensus        84 ~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~A  154 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRL--IAAERERE  154 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHH--HHHHHHHH
Confidence            8888888888888777642  321 111111111111   1111111 222221 444555554444333  26888889


Q ss_pred             HHHHHhC-CCCCCHhhH-HHHHHHHhhc-CChHHHHHHHHHHhcc
Q 006627          533 HEMIKSM-PLRPNMIVW-GALLAASKLH-KNPSMGEIAATQILEI  574 (638)
Q Consensus       533 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~-~~~~~A~~~~~~~~~~  574 (638)
                      ++.++++ ...|+.... ..+...+... +.+++|..+|+++.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            8888777 556654333 3333334443 5678888888888763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.39  E-value=6.4e-07  Score=90.71  Aligned_cols=119  Identities=8%  Similarity=-0.044  Sum_probs=94.6

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN  560 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  560 (638)
                      +...+.+.|++++|.+.++++.+.  .+.+...+..+..++.+.|++++|++.++++ ...| +..++..+..++...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            334566778888888888888763  3334677888888888888888888888877 4445 57788889999999999


Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMSNI--YAVANRWNDVAGVRR  603 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~  603 (638)
                      +++|+..++++++++|+++..+..++.+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999988  899999999999988

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.37  E-value=2.8e-07  Score=81.32  Aligned_cols=121  Identities=11%  Similarity=-0.060  Sum_probs=91.3

Q ss_pred             hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH----------------hhHH
Q 006627          488 SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NM----------------IVWG  549 (638)
Q Consensus       488 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~  549 (638)
                      ...|+++++.+.|+....  ........+..+...+.+.|++++|.+.++++ ...| +.                ..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             -------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            344555555555543322  11113456777888999999999999999987 2222 22                6788


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+..++...|++++|+..++++++++|+++.++..++.+|...|++++|++.|++..+..+
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            8888999999999999999999999999999999999999999999999999998876543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.36  E-value=1.3e-06  Score=70.74  Aligned_cols=110  Identities=7%  Similarity=-0.084  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HhhH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL----RPN----MIVW  548 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~  548 (638)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|...++++ ..    .++    ..++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            45666666777777777777777777652  2334556666666666677777777666665 11    111    4455


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ..+...+...|++++|...++++++..| ++.....++.+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            5666666666666666666666666666 6555555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.35  E-value=8.2e-05  Score=69.99  Aligned_cols=95  Identities=7%  Similarity=-0.088  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHH
Q 006627          357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG--ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD-VNGAYRL  433 (638)
Q Consensus       357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~  433 (638)
                      +++++..++.+.... +-+..+|+.-...+.+.+  .++.+..+++.+.+.. +-+...++.-.-++...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            455666666655432 223344444333444444  3566666666666655 4455555555555555565 4666666


Q ss_pred             HHcCC---CCCchhHHHHHHHHH
Q 006627          434 FSEAI---YRDICMWNAMMAGYG  453 (638)
Q Consensus       434 ~~~~~---~~~~~~~~~l~~~~~  453 (638)
                      ++++.   ..|...|+.....+.
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHH
Confidence            66555   224445554444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.34  E-value=8.4e-07  Score=71.86  Aligned_cols=92  Identities=12%  Similarity=-0.003  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-------cchHHHHH
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-------YGYNVLMS  586 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~  586 (638)
                      +..++..+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++       +..+..++
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            344444445555555555555444 111 233444444444555555555555555555544443       44445555


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 006627          587 NIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       587 ~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+|...|++++|.+.+++..+
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHH
Confidence            555555555555555554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.34  E-value=1.8e-06  Score=69.65  Aligned_cols=96  Identities=11%  Similarity=-0.017  Sum_probs=54.0

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HhhHHH
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP----N----MIVWGA  550 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~  550 (638)
                      +..+...+.+.|++++|++.|+++++.  .+.+...|..+..+|.+.|++++|++.+++. ...|    +    ..++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344445555555555555555555431  1223444555555555555555555555544 1111    1    134556


Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      +..++...|++++|+..++++++..|+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            667777788888888888888887775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.34  E-value=3.4e-06  Score=65.95  Aligned_cols=100  Identities=17%  Similarity=0.037  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhHHHHHH
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVWGALLA  553 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~  553 (638)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|.+.++++ ...|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34455555566666666666666666552  2334455666666666667777777666665 2233   4666777777


Q ss_pred             HHhhc-CChHHHHHHHHHHhccCCCCc
Q 006627          554 ASKLH-KNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       554 ~~~~~-~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .+... |++++|.+.++++++..|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            78888 888888888888888888754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.33  E-value=4.4e-06  Score=67.45  Aligned_cols=105  Identities=8%  Similarity=-0.021  Sum_probs=70.2

Q ss_pred             HHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHH
Q 006627          482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI---EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLA  553 (638)
Q Consensus       482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~  553 (638)
                      .+...+...|++++|...++++.+..  +.+.   ..+..+..++.+.|++++|...++++ ...|+    ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            34455566677777777777666531  1222   35556666777777777777777665 22332    456777788


Q ss_pred             HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      .+...|++++|...++++++..|+++........+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            88889999999999999999999877665554444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.33  E-value=2.3e-06  Score=83.40  Aligned_cols=90  Identities=9%  Similarity=-0.053  Sum_probs=79.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      +...|..+..++.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++..++..++.++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3467778888899999999999999887 5556 5788888999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHH
Q 006627          590 AVANRWNDVAGV  601 (638)
Q Consensus       590 ~~~g~~~~A~~~  601 (638)
                      ...++++++.+.
T Consensus       352 ~~~~~~~~a~k~  363 (370)
T 1ihg_A          352 QKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.31  E-value=2.4e-06  Score=68.14  Aligned_cols=98  Identities=13%  Similarity=0.030  Sum_probs=66.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKL  557 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  557 (638)
                      +..+...+.+.|++++|...++++.+.  .+.+...+..+..++...|++++|+..++++ ...| +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344555666777777777777777652  3335566677777777777777777777776 3444 46677788888888


Q ss_pred             cCChHHHHHHHHHHhccCCCCc
Q 006627          558 HKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .|++++|+..++++++++|+++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8889999999999999888764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.31  E-value=1.3e-06  Score=74.07  Aligned_cols=93  Identities=10%  Similarity=-0.019  Sum_probs=60.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CC------------------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSM-PL------------------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      ...+..+.+.|++++|+..|++. ..                  .| +...|..+..++...|++++|+..++++++++|
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p   94 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE   94 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence            34455666677777777766655 11                  11 124556666666677777777777777777777


Q ss_pred             CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          577 QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       577 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      +++.+|..+|.+|...|++++|...|++..+..
T Consensus        95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            777777777777777777777777777665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.30  E-value=1.5e-05  Score=82.24  Aligned_cols=168  Identities=10%  Similarity=-0.042  Sum_probs=129.0

Q ss_pred             HHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--
Q 006627          427 VNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGC----------GEEALIFFVDMERSGVKPNGITFIGLLNACSHAG--  491 (638)
Q Consensus       427 ~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--  491 (638)
                      .++|++.++++.  .| +...|+.--.++...|+          +++++..++++.+.. +-+..+|..-..++.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            345566666555  22 33455554455555555          788999999998874 456678888888888888  


Q ss_pred             cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc----------
Q 006627          492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG-LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH----------  558 (638)
Q Consensus       492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------  558 (638)
                      +++++++.++++.+  --+-+...|+.-..++.+.| .+++++++++++ ...| +..+|......+...          
T Consensus       124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence            67999999999987  34556788888888888888 899999999888 5555 577887777666552          


Q ss_pred             ----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 006627          559 ----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWND  597 (638)
Q Consensus       559 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  597 (638)
                          +.++++.+.++++++.+|++..+|..+++++.+.+++++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                457999999999999999999999999999999998655

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.30  E-value=1.7e-06  Score=73.13  Aligned_cols=128  Identities=13%  Similarity=-0.020  Sum_probs=77.0

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----Hhh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN----MIV  547 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~  547 (638)
                      +..+...+...|++++|...+++..+...-.++    ...+..+...+...|++++|.+.+++.    +..++    ...
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            444444445555555555555544431100011    124445555555566666666655554    00111    345


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          548 WGALLAASKLHKNPSMGEIAATQILEIEPQ------NYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      +..+...+...|++++|...+++++++.+.      ....+..++.+|...|++++|.+.+++..+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            566677777888888888888888765322      245678899999999999999999988754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.27  E-value=2.2e-06  Score=82.48  Aligned_cols=118  Identities=8%  Similarity=-0.071  Sum_probs=97.2

Q ss_pred             cCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HhhHHHH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----------------MIVWGAL  551 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l  551 (638)
                      .+++++|...++.....   .| +...+..+...+.+.|++++|+..|+++ ...|+                ..+|..+
T Consensus       126 L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            34555555555444321   23 3567888899999999999999999988 33443                4788899


Q ss_pred             HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..+
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999876544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=8.6e-06  Score=81.81  Aligned_cols=163  Identities=8%  Similarity=-0.091  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcH----HHHHHHHHHHhccCcHHHHHHHHHHHhhh---cCCCCC-hhH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNG----ITFIGLLNACSHAGLVTEGKSVFDKMVHG---LGLVPK-IEH  515 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~  515 (638)
                      +..+...|...|++++|.+++.++...- ..++.    .+...+...+...|+++.|.++++.....   .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            4556677777777777777777665421 11222    12333344455678889998888876542   122222 356


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---C----cc
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-----P--LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---N----YG  580 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~----~~  580 (638)
                      +..++..+...|++++|..+++++     +  ..| ...++..++..|...|++++|...++++....|.   .    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            778888999999999999998876     1  122 2457778888999999999999999999875432   1    24


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          581 YNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+..++.++...|+|++|...+....+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            567788889999999999998877654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.22  E-value=6.1e-06  Score=61.59  Aligned_cols=73  Identities=12%  Similarity=0.059  Sum_probs=63.6

Q ss_pred             CCCHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627          542 RPNMIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG  615 (638)
Q Consensus       542 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  615 (638)
                      ++++..+..+..++...++   .++|...++++++++|+++.+...+|..+...|+|++|+.+|+++.+..+. .|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence            4467778888877765544   799999999999999999999999999999999999999999999988776 554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.22  E-value=2.5e-06  Score=70.05  Aligned_cols=108  Identities=11%  Similarity=0.013  Sum_probs=75.2

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------C
Q 006627          481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-----K-----IEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-------R  542 (638)
Q Consensus       481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~  542 (638)
                      ......+.+.|++++|...|++..+-..-.|     +     ...|..+..++.+.|++++|+..+++. ..       .
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            3344445556666666666666654211100     1     126677777777777777777777665 34       7


Q ss_pred             CC-HhhH----HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627          543 PN-MIVW----GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI  588 (638)
Q Consensus       543 p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  588 (638)
                      |+ ...|    .....++...|++++|+..|+++++++|++....-.+..+
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            75 5678    8889999999999999999999999999988877666544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.19  E-value=5.9e-06  Score=63.18  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      +...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56788888899999999999999999999999999999999999999999999999999887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.17  E-value=1.2e-06  Score=69.53  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=63.0

Q ss_pred             cCcHHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHH
Q 006627          490 AGLVTEGKSVFDKMVHGLG--LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGE  565 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~  565 (638)
                      .|++++|+..|+++.+. +  .+.+...+..+..++...|++++|++.++++ ...| +..++..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46667777777776642 1  1223455666777777777777777777776 3334 4677777888888888888899


Q ss_pred             HHHHHHhccCCCCcchHHH
Q 006627          566 IAATQILEIEPQNYGYNVL  584 (638)
Q Consensus       566 ~~~~~~~~~~p~~~~~~~~  584 (638)
                      ..++++++..|+++.....
T Consensus        82 ~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHH
Confidence            9999888888887665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=6e-07  Score=70.41  Aligned_cols=93  Identities=12%  Similarity=-0.037  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHH
Q 006627          512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNV  583 (638)
Q Consensus       512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~  583 (638)
                      +...+..+...+.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            3455666777777888888888888776 3334 57778888889999999999999999999999998      67778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 006627          584 LMSNIYAVANRWNDVAGVRRV  604 (638)
Q Consensus       584 ~l~~~~~~~g~~~~A~~~~~~  604 (638)
                      .++.++...|++++|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888877777665553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.14  E-value=8.8e-06  Score=82.37  Aligned_cols=117  Identities=13%  Similarity=0.031  Sum_probs=85.1

Q ss_pred             HHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT  494 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~  494 (638)
                      ...+.+.|++++|.+.+++..   ..+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|+++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            345667888999998888765   3356788888888889999999999998888763 445678888888888899999


Q ss_pred             HHHHHHHHHhhhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 006627          495 EGKSVFDKMVHGLGLVPKIEHYGCMVDL--LGRAGLLDEAHEMIK  537 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~  537 (638)
                      +|.+.++++.+..  +.+...+..+..+  +.+.|++++|++.++
T Consensus        92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999998887642  2233455555555  778888888888887

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.13  E-value=8.1e-06  Score=78.60  Aligned_cols=153  Identities=8%  Similarity=-0.044  Sum_probs=81.3

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627          411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA  490 (638)
Q Consensus       411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  490 (638)
                      ...+..+...+.+.|++++|...|++....+....     .+...++..++...+.          ...|..+..+|.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence            34567778888999999999999987653222111     1122233333332221          13677888889999


Q ss_pred             CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHH-HhhcCChHHHHHH
Q 006627          491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAA-SKLHKNPSMGEIA  567 (638)
Q Consensus       491 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~A~~~  567 (638)
                      |++++|...++++++.  .+.+...+..+..+|...|++++|...|+++ ...|+ ...+..+... ....+..+.+...
T Consensus       244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999863  3446788889999999999999999999998 55664 4455555544 2345678889999


Q ss_pred             HHHHhccCCCCcc
Q 006627          568 ATQILEIEPQNYG  580 (638)
Q Consensus       568 ~~~~~~~~p~~~~  580 (638)
                      ++++++..|+++.
T Consensus       322 ~~~~l~~~p~~~~  334 (338)
T 2if4_A          322 YKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------
T ss_pred             HHHhhCCCCCCCC
Confidence            9999999998653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.10  E-value=2e-06  Score=70.46  Aligned_cols=50  Identities=10%  Similarity=0.024  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCC
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN-----------RWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~  610 (638)
                      +++|+..|+++++++|+++.+|..+|.+|...|           ++++|+++|++..+..+
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            568888888888888888888888888888774           78888888888766544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.09  E-value=8.3e-06  Score=64.31  Aligned_cols=62  Identities=8%  Similarity=-0.077  Sum_probs=33.6

Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      ...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...|++..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.06  E-value=1.8e-05  Score=79.42  Aligned_cols=123  Identities=9%  Similarity=-0.014  Sum_probs=89.4

Q ss_pred             HhccCcHHHHHHHHHHHhhhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLG--L---VPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGA  550 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~  550 (638)
                      +..+|++++|..++++..+...  +   .|+ ..+++.|..+|...|++++|..+++++         +..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4456777777777666554211  1   122 356777777777777777777777665         23344 456788


Q ss_pred             HHHHHhhcCChHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          551 LLAASKLHKNPSMGEIAATQILE-----IEPQNYGY---NVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      |...|...|++++|+..++++++     +.|++|.+   ...+..++...|++++|+..+++++++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999986     56777654   4578888999999999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.06  E-value=4.7e-05  Score=76.34  Aligned_cols=158  Identities=9%  Similarity=-0.040  Sum_probs=115.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCc----------------HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627          450 AGYGMHGCGEEALIFFVDMERSGVKPN----------------GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI  513 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~  513 (638)
                      ..+...|++++|++.|.++.+......                ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345566777778777777776431111                1246788899999999999999999887643333332


Q ss_pred             ----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhcc------C
Q 006627          514 ----EHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEI------E  575 (638)
Q Consensus       514 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~  575 (638)
                          ...+.+...+...|++++|.++++..       ...+. ..++..+...+...|++++|...++++...      .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                22334445556779999999988766       22332 567788899999999999999999999763      2


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      |....++..++.+|...|++++|..++++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            23356788999999999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.04  E-value=1.7e-05  Score=59.22  Aligned_cols=80  Identities=21%  Similarity=0.166  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      ..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++++|+++..+..++.++..
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            44555666666666666666666665 2233 456677777788888888888888888888888888888888888766


Q ss_pred             cC
Q 006627          592 AN  593 (638)
Q Consensus       592 ~g  593 (638)
                      .|
T Consensus        90 ~g   91 (91)
T 1na3_A           90 QG   91 (91)
T ss_dssp             HC
T ss_pred             cC
Confidence            54

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.02  E-value=1.4e-05  Score=80.64  Aligned_cols=114  Identities=10%  Similarity=-0.002  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 006627          478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL  557 (638)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~  557 (638)
                      ..+..+...+.+.|++++|...|+++.+.....++..              .++..+ ..    .-....|..+..++.+
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~-~~----~~~~~~~~nla~~~~~  329 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA-SE----SFLLAAFLNLAMCYLK  329 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence            4566666666666777777777666654211111100              000000 00    0014677888899999


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+..+
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999876544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.01  E-value=1.5e-05  Score=77.61  Aligned_cols=115  Identities=11%  Similarity=0.006  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 006627          477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRP-NMIVWGALLAAS  555 (638)
Q Consensus       477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~  555 (638)
                      ...+..+...+.+.|++++|.+.|+++.+..   +..          ......+++.      ...| +..+|..+...+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence            3457777778888888888888888877520   100          0001111111      1223 357788888999


Q ss_pred             hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+.|++++|+..++++++++|+++.++..++.+|...|++++|++.|++..+..+
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.00  E-value=2.7e-05  Score=65.51  Aligned_cols=132  Identities=14%  Similarity=-0.024  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEH  515 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~  515 (638)
                      +..+...+...|++++|+..+++..+...   .+.  ..++..+...+...|++++|.+.+++..+...-.++    ...
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            34444555555566666655555443210   111  135666667777777788777777776542111111    345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-------PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  576 (638)
                      +..+..++...|++++|.+.+++.       +..+ ...++..+...+...|++++|...+++++++..
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            666677777788888888777665       1111 134566777788888999999999988887544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.97  E-value=0.00018  Score=74.19  Aligned_cols=153  Identities=10%  Similarity=-0.021  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc----------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627          456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL----------VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR  525 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  525 (638)
                      ...++|++.++++.... +-+...|+.--.++...|+          ++++++.++++.+  ..+-+...|+.-..++.+
T Consensus        43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence            34578899999999874 3344567666666666666          8999999999997  445567888888888999


Q ss_pred             cC--ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--------
Q 006627          526 AG--LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK-NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA--------  592 (638)
Q Consensus       526 ~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------  592 (638)
                      .|  +++++++.++++ ...| +..+|..-.......| .++++.+.++++++.+|.|..+|...+.++.+.        
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence            99  679999999998 4444 6888988888888888 899999999999999999999999999998885        


Q ss_pred             ------CCHHHHHHHHHHHhhcCCc
Q 006627          593 ------NRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       593 ------g~~~~A~~~~~~~~~~~~~  611 (638)
                            +++++|.+++++.....+.
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~  224 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN  224 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC
Confidence                  6789999999888765443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.95  E-value=2.6e-05  Score=60.78  Aligned_cols=68  Identities=6%  Similarity=-0.167  Sum_probs=62.4

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      +...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|++.+++..+..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            45678888899999999999999999999999999999999999999999999999999998765543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.88  E-value=0.00011  Score=59.94  Aligned_cols=90  Identities=2%  Similarity=-0.183  Sum_probs=55.5

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 006627          519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV---  591 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---  591 (638)
                      |...|...+..++|.++|++.-..-++.....+...|..    .+|+++|...++++.+.  .++..+..|+.+|..   
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence            444444444555555555544222344555555555555    56777777777777665  456677777777777   


Q ss_pred             -cCCHHHHHHHHHHHhhcCC
Q 006627          592 -ANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       592 -~g~~~~A~~~~~~~~~~~~  610 (638)
                       .+++++|.+.|++..+.|.
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHHHCCC
Confidence             7777777777777766553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.83  E-value=1.5e-05  Score=65.29  Aligned_cols=50  Identities=16%  Similarity=0.082  Sum_probs=34.5

Q ss_pred             HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc-----------CChHHHHHHHHHHhccCCCCc
Q 006627          530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLH-----------KNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      ++|+..|+++ .+.| +..+|..+..+|...           |++++|+..|+++++++|++.
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            3555555554 3344 345555666666554           589999999999999999975

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.79  E-value=6.6e-05  Score=55.85  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3567778888999999999999999999999999999999999999999999999999999876543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.69  E-value=8.7e-05  Score=58.26  Aligned_cols=82  Identities=10%  Similarity=0.024  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627          495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQIL  572 (638)
Q Consensus       495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  572 (638)
                      .|.+.++++.+  ..+.+...+..+..++...|++++|+..++++ ...| +...|..+...+...|++++|...+++++
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666554  22334566666677777777777777777666 2333 46677777888888888888888888888


Q ss_pred             ccCCCC
Q 006627          573 EIEPQN  578 (638)
Q Consensus       573 ~~~p~~  578 (638)
                      ++.|++
T Consensus        81 ~~~~~~   86 (115)
T 2kat_A           81 AAAQSR   86 (115)
T ss_dssp             HHHHHH
T ss_pred             Hhcccc
Confidence            887753

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.67  E-value=4.7e-05  Score=72.97  Aligned_cols=429  Identities=9%  Similarity=0.044  Sum_probs=261.1

Q ss_pred             chHhhhhHHHhhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc
Q 006627            9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL   85 (638)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   85 (638)
                      ...+|..|.++..+.|++.+|++.|-+.   ..|..+|.+..+.|.+++-+.++...++..  -++..=+.|+-+|++.+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~  130 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN  130 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence            6788999999999999999999999888   899999999999999999999998776653  34455568899999998


Q ss_pred             CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC------------------------CCcchHH
Q 006627           86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN------------------------RDVVSWS  141 (638)
Q Consensus        86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~  141 (638)
                      +..+.++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.||.
T Consensus       131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK  203 (624)
T 3lvg_A          131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK  203 (624)
T ss_dssp             SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred             cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence            8776544332       45655566666777777777777777765532                        4678999


Q ss_pred             HHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHh
Q 006627          142 TMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSK  221 (638)
Q Consensus       142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  221 (638)
                      .+-.+|...+.+.-|.-+--.+.   +.|+  ....++..|-..|.+++...+++.-.....-   ...+|+.|.-.|++
T Consensus       204 eV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErA---HmGmFTELaILYsK  275 (624)
T 3lvg_A          204 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLERA---HMGMFTELAILYSK  275 (624)
T ss_dssp             HHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC---CHHHHHHHHHHHHS
T ss_pred             HHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHh
Confidence            99999999999887765543333   1222  2334566678888888888777766532211   46788999888887


Q ss_pred             cCChHHHHHHHhccCC----C-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHc--------------CccCChH
Q 006627          222 CGNLAYAKQLFNRLNQ----N-------SVVSWTVMISGYIRCNEINEGVRLFAEMIEE--------------NVFPSEI  276 (638)
Q Consensus       222 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------~~~p~~~  276 (638)
                      - +.++..+.++..-.    |       ....|..++-.|.+-.+++.|...   |.++              .-.+|..
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~E  351 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVE  351 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSH
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHH
Confidence            6 45555554443322    2       345678888888888887766532   2211              0123444


Q ss_pred             hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhH-HHHHHHHHhcC
Q 006627          277 TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIW-NAVISAYAQAH  355 (638)
Q Consensus       277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~  355 (638)
                      .|-..|.-|.... +....+++.-+. .  +.|.   ...++.+.+.|.+.-....+..+...|...- .++-..|....
T Consensus       352 iyYKAi~FYL~e~-P~lL~DLL~vL~-p--rlDh---~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE  424 (624)
T 3lvg_A          352 LYYRAIQFYLEFK-PLLLNDLLMVLS-P--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE  424 (624)
T ss_dssp             HHHHHHHHHTTSC-CTTSHHHHHHHC-T--TCCS---TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-hHHHHHHHHhcc-c--cCCh---HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence            4444444443221 111111111110 0  1111   1234445555555555555555555554433 34445566666


Q ss_pred             CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627          356 CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS  435 (638)
Q Consensus       356 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  435 (638)
                      +++.-..                   .+..|-+-.+...|.++    .+   .+-...-..-...|.+.++++++..+.+
T Consensus       425 Dy~~LR~-------------------SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~K  478 (624)
T 3lvg_A          425 DYQALRT-------------------SIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCK  478 (624)
T ss_dssp             CCHHHHH-------------------TTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred             hHHHHHH-------------------HHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            6543221                   11122222222322222    21   1112222333456777888888876543


Q ss_pred             cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627          436 EAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV  499 (638)
Q Consensus       436 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  499 (638)
                      +=     ..|.-.|......|+.+-|.++++-..+.|   +...|...+..|-..=++|-++++
T Consensus       479 kD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          479 KD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             TT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             hc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence            21     122223444566788888888888888876   335577777777777777777665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.61  E-value=0.00071  Score=55.01  Aligned_cols=112  Identities=10%  Similarity=-0.111  Sum_probs=91.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 006627          456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDE  531 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  531 (638)
                      +++++|+..|++..+.| .|+..    +...|...+.+++|.+.|++..+.    -+......|..+|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46789999999999887 55544    777788888899999999999873    456777788888887    789999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCC
Q 006627          532 AHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEP  576 (638)
Q Consensus       532 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p  576 (638)
                      |.++|++.-..-++.....+...|..    .+|.++|...++++.+...
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988334567788888888888    7899999999999998753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.56  E-value=0.00018  Score=54.59  Aligned_cols=80  Identities=10%  Similarity=0.044  Sum_probs=61.8

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCC-CHh-hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          519 MVDLLGRAGLLDEAHEMIKSM-PLRP-NMI-VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       519 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      ....+.+.|++++|.+.++++ ...| +.. .+..+...+...|++++|+..++++++++|+++..+..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            456778889999999999887 3445 456 78888888889999999999999999999998776633        556


Q ss_pred             HHHHHHHHHHh
Q 006627          596 NDVAGVRRVMK  606 (638)
Q Consensus       596 ~~A~~~~~~~~  606 (638)
                      .++...+++..
T Consensus        78 ~~a~~~~~~~~   88 (99)
T 2kc7_A           78 MDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHCCTT
T ss_pred             HHHHHHHHHHh
Confidence            66666666543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.53  E-value=9.8e-05  Score=56.05  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=26.6

Q ss_pred             HHhhcCChHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          554 ASKLHKNPSMGEIAATQILEIEPQNYG-YNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.|++..+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334444555555555555555554444 455555555555555555555544443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.40  E-value=0.005  Score=58.12  Aligned_cols=119  Identities=13%  Similarity=-0.016  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627          458 GEEALIFFVDMERSGVKPN-GITFIGLLNACSH---AG-----LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL  528 (638)
Q Consensus       458 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  528 (638)
                      ..+|..+|++..+.  .|+ ...+..+..+|..   .+     ........++........+.+...+..+...+...|+
T Consensus       215 ~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          215 LNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            46788888888876  454 3455554444431   00     0000011111111100123344444444444444455


Q ss_pred             hHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          529 LDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       529 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      +++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..
T Consensus       293 ~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            55555555555 233444444444555555555555555555555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.39  E-value=0.00088  Score=67.24  Aligned_cols=132  Identities=6%  Similarity=-0.093  Sum_probs=79.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHc---CcCCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHh-----C--CCCcccHHH
Q 006627          350 AYAQAHCIDKAFELFIHMKVS---KVRPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----G--LEVDVILKT  415 (638)
Q Consensus       350 ~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~  415 (638)
                      .+..+|++++|+.++++..+.   -+.|+    ..+++.|...|...|++++|..++++..+.     |  .+....+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345667777777777665332   12222    235556666677777777777766655431     1  112234566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHH
Q 006627          416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVT  494 (638)
Q Consensus       416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~  494 (638)
                      .|...|...|++++|+.++                        ++|+.+++...-.. .|+. .+...+..++...+.++
T Consensus       398 nLa~~~~~~G~~~eA~~~~------------------------~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMI------------------------CKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHH------------------------HHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH------------------------HHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence            6666666677777766665                        34555555544322 2333 45666677777888899


Q ss_pred             HHHHHHHHHhhh
Q 006627          495 EGKSVFDKMVHG  506 (638)
Q Consensus       495 ~a~~~~~~~~~~  506 (638)
                      +|+..|.++.+.
T Consensus       453 ~ae~~~~~~~~~  464 (490)
T 3n71_A          453 QNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888888663

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.35  E-value=6.1e-05  Score=72.22  Aligned_cols=366  Identities=11%  Similarity=0.057  Sum_probs=222.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627          208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF  287 (638)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  287 (638)
                      .+.+|..|..+....+.+.+|++.|-+  ..|...|..+|....+.|.+++-+..+...++..-.|  ..=+.++.+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence            567888999999999988888776543  3566788899999999999999999888777654444  444578889999


Q ss_pred             cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CCchh
Q 006627          288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS------------------------KDVMI  343 (638)
Q Consensus       288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~  343 (638)
                      .+++.+.++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            998877655543       46666667788888888888888888876642                        26778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627          344 WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK  423 (638)
Q Consensus       344 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  423 (638)
                      |-.+-.+|...+++..|.-.--.+.   +.|+  ....++..|...|.+++-+.+++.-.... .....+|+-|.-.|++
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence            9999999999988876643333322   1222  23345666888888888888887766432 4567788888888887


Q ss_pred             cCCHHHHHHHHHcCC----CC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627          424 CGDVNGAYRLFSEAI----YR-------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL  492 (638)
Q Consensus       424 ~~~~~~A~~~~~~~~----~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~  492 (638)
                      - ++++..+.++-.-    -|       ....|..++-.|.+...++.|...   |.++  +|+..-...+-....+..+
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN  349 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVAN  349 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSC
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcch
Confidence            5 5666666554322    22       345788888888888888876543   2221  1222212222222222222


Q ss_pred             HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------------CCCCCHhhHHHHHHHHhhcC
Q 006627          493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-------------PLRPNMIVWGALLAASKLHK  559 (638)
Q Consensus       493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~~  559 (638)
                      .+--.+...=-.   ...|.  ..+.|+.++...=+...+.++|++.             ....+...-..+-..+....
T Consensus       350 ~EiyYKAi~FYL---~e~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE  424 (624)
T 3lvg_A          350 VELYYRAIQFYL---EFKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE  424 (624)
T ss_dssp             SHHHHHHHHHHT---TSCCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH---HhChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence            222111111111   11121  2333444444344444444444444             22223334444555566666


Q ss_pred             ChHHHHHHH------------HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627          560 NPSMGEIAA------------TQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR  603 (638)
Q Consensus       560 ~~~~A~~~~------------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  603 (638)
                      |++.-+...            +++.+ . +-......-+.+|.+.++|++++.+.+
T Consensus       425 Dy~~LR~SId~ydNFD~i~LA~rLEk-H-eL~eFRrIAA~LYkkn~rw~qsi~l~K  478 (624)
T 3lvg_A          425 DYQALRTSIDAYDNFDNISLAQRLEK-H-ELIEFRRIAAYLFKGNNRWKQSVELCK  478 (624)
T ss_dssp             CCHHHHHTTSSCCCSCTTHHHHHHHT-C-SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred             hHHHHHHHHHHhccccHHHHHHHHhh-C-chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            666433322            11111 1 113345566777888899998876543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.22  E-value=0.00086  Score=60.44  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             HHHHHHHHhC-CCCCC---HhhHHHHHHHHhh-----cCChHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCHHHH
Q 006627          530 DEAHEMIKSM-PLRPN---MIVWGALLAASKL-----HKNPSMGEIAATQILEIEPQN-YGYNVLMSNIYAVA-NRWNDV  598 (638)
Q Consensus       530 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A  598 (638)
                      .+|...++++ .+.|+   -..|..+...|..     .|+.++|++.|+++++++|+. ...++.+++.++.. |++++|
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            3444444444 34555   4466667666766     489999999999999999974 88899999988885 899999


Q ss_pred             HHHHHHHhhcCCcCCCC
Q 006627          599 AGVRRVMKEIRVKKEPG  615 (638)
Q Consensus       599 ~~~~~~~~~~~~~~~~~  615 (638)
                      .+++++.....+..+|+
T Consensus       260 ~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          260 DEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHcCCCCCCCC
Confidence            99999888877775565

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.20  E-value=0.27  Score=50.65  Aligned_cols=251  Identities=9%  Similarity=-0.013  Sum_probs=129.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627          313 ANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL  392 (638)
Q Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  392 (638)
                      -..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+
T Consensus        75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l  152 (618)
T 1qsa_A           75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ  152 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence            34455666777888888887766 33344555556677777888777777776665444 33445566666666655533


Q ss_pred             HHH--HHHHHHHHHhC-----------CCCccc-HHHHHHHHHHhcCCHHHHHHHHHcCCCCCch---hHHHHHHHHHhc
Q 006627          393 EMG--KWLHTYIEKQG-----------LEVDVI-LKTALVDMYAKCGDVNGAYRLFSEAIYRDIC---MWNAMMAGYGMH  455 (638)
Q Consensus       393 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~  455 (638)
                      ...  .+=++.+...|           ++++.. ....++..+   .++..+....... .++..   .+...+.-+.+ 
T Consensus       153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-  227 (618)
T 1qsa_A          153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVAFASVAR-  227 (618)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence            221  11111222111           122211 111222111   1223333333222 11111   11111222222 


Q ss_pred             CChHHHHHHHHHHHHcC-CCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          456 GCGEEALIFFVDMERSG-VKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      ++.+.|...+....... +.+..  .....+.......+...++...+......   .++.....-.+....+.|+++.|
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence            37788888888776543 22222  12333343445555345555555554432   23333333344445577888888


Q ss_pred             HHHHHhCCCCC-C-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          533 HEMIKSMPLRP-N-MIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       533 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ...|+.++..+ + .....-+..+....|+.++|...|+++.+
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88888885433 2 33333455566778888888888888875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.19  E-value=0.0012  Score=50.07  Aligned_cols=64  Identities=13%  Similarity=0.086  Sum_probs=37.7

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      +...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33455555566666666666666666666543 22345566666666666666666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.15  E-value=0.00052  Score=67.65  Aligned_cols=85  Identities=12%  Similarity=-0.019  Sum_probs=39.6

Q ss_pred             ccCcHHHHHHHHHHHhhhc--CCCC---C-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHHHH
Q 006627          489 HAGLVTEGKSVFDKMVHGL--GLVP---K-IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGALL  552 (638)
Q Consensus       489 ~~~~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~  552 (638)
                      ..|++++|..++++..+..  -+.|   + ..+++.|..+|...|++++|..+++++         +..|+ ..+++.+.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3466677766666654421  1111   1 134455555555555555555555443         11222 23344444


Q ss_pred             HHHhhcCChHHHHHHHHHHhc
Q 006627          553 AASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      ..|..+|++++|+..++++++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            444444444444444444444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.13  E-value=0.0039  Score=58.85  Aligned_cols=133  Identities=12%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             CCcHHHHHHHHHHHh--c---cCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHH----hcCCh-------HHHHHHH
Q 006627          474 KPNGITFIGLLNACS--H---AGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLG----RAGLL-------DEAHEMI  536 (638)
Q Consensus       474 ~p~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~g~~-------~~A~~~~  536 (638)
                      +.+...|...+++..  .   ..+..+|..+|+++++   ..|+. ..+..+..++.    ..+..       ..+.+..
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            455566766665532  2   2346889999999986   35653 34443333332    11111       1222222


Q ss_pred             HhCC-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          537 KSMP-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       537 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ..+. .+.++.++..+...+...|++++|...++++++++|. ...|..+++++.-.|++++|.+.+++...-.+
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            2332 2346777777777777789999999999999999985 67889999999999999999999998866544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.07  E-value=0.0012  Score=53.31  Aligned_cols=95  Identities=13%  Similarity=-0.065  Sum_probs=74.3

Q ss_pred             cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHhhHHHHHHHHhhcCChH
Q 006627          490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG---LLDEAHEMIKSM-PLR-P--NMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~  562 (638)
                      ......+.+-|.+...  .-+++..+...+..++++++   +.++++.++++. ... |  ....+..+.-++.+.|+++
T Consensus        11 ~~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence            3456677777777765  33478888888899999988   666999998887 323 5  3567777888889999999


Q ss_pred             HHHHHHHHHhccCCCCcchHHHHH
Q 006627          563 MGEIAATQILEIEPQNYGYNVLMS  586 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~l~  586 (638)
                      +|++.++++++.+|++..+..+.-
T Consensus        89 ~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999877766653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.99  E-value=0.0011  Score=65.40  Aligned_cols=102  Identities=10%  Similarity=-0.037  Sum_probs=61.6

Q ss_pred             HHHHhccCcHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-Hhh
Q 006627          484 LNACSHAGLVTEGKSVFDKMVHGL--GLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIV  547 (638)
Q Consensus       484 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~  547 (638)
                      +..+.+.|++++|...+++..+..  -+.|+    ..+++.++..|...|++++|+.+++++         +..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445556777777777777776421  11221    245666677777777777777776655         12233 345


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCcchHHHH
Q 006627          548 WGALLAASKLHKNPSMGEIAATQILE-----IEPQNYGYNVLM  585 (638)
Q Consensus       548 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l  585 (638)
                      ++.+...|...|++++|+..++++++     +.|++|.+-..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            56666667777777777777777777     456665544433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.98  E-value=0.0025  Score=51.46  Aligned_cols=65  Identities=8%  Similarity=-0.050  Sum_probs=31.3

Q ss_pred             CCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627          543 PNMIVWGALLAASKLHK---NPSMGEIAATQILEIE-P-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       543 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      ++..+...+.+++.+.+   +.++++..++.+++.+ | ++...++.|+-.|++.|+|++|+++++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34444444444544444   3335555555555544 4 2344445555555555555555555554433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.98  E-value=0.0034  Score=61.90  Aligned_cols=59  Identities=3%  Similarity=-0.074  Sum_probs=26.1

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILE-----IEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      +++.+..+|...|++++|+..++++++     +.|+++   ..+..|+.+|..+|++++|+.++++.
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344444444444444444444444443     222222   23444444444444444444444444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.92  E-value=0.054  Score=41.93  Aligned_cols=140  Identities=12%  Similarity=-0.020  Sum_probs=98.3

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627          453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA  532 (638)
Q Consensus       453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  532 (638)
                      .-.|..++..++..+....   .+..-|+.++--....-+-+-..++++..-+-|.+              ..+|+....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV   80 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV   80 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence            4467888888888887764   23344555554445556667777777777553222              234444444


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          533 HEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       533 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      .+.+-.++  .+.......+.....+|..++-..++..++.-+|-+|+...-++.+|.+.|+..+|.+++.+.=+.|++
T Consensus        81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            44444442  244556667778889999999999999987777777999999999999999999999999999888864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.90  E-value=0.62  Score=49.85  Aligned_cols=258  Identities=15%  Similarity=0.003  Sum_probs=136.2

Q ss_pred             HHHHHhcCChHHHHHHHhccCCC----Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCc-------cCChHhHHHHH
Q 006627          216 IDMYSKCGNLAYAKQLFNRLNQN----SVV--SWTVMISGYIRCNEINEGVRLFAEMIEENV-------FPSEITILSLI  282 (638)
Q Consensus       216 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll  282 (638)
                      .-+....|+.+++..+++.....    +..  .=..+.-+.+..|..+++.+++.......-       .+....-..+-
T Consensus       381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG  460 (963)
T 4ady_A          381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG  460 (963)
T ss_dssp             HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred             HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence            34566778888888888876642    111  112333456666766778887777654311       01111111222


Q ss_pred             HHhcccCCh-hhHHHHHHHHHHhcCCCch--hhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cc--hhHHHHHHHHHhcCC
Q 006627          283 IECGFVGGL-QLGKWLHAYILRNGFEFSL--AMANALVDMYGKCREIRSARTLFDGMKSK-DV--MIWNAVISAYAQAHC  356 (638)
Q Consensus       283 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~~~  356 (638)
                      -+.+..|.- +.+...+..+....- +..  ..-.++...++-.|+-+....++..+.+. +.  .-...+.-++...|+
T Consensus       461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence            222223322 233444444433221 111  11223344455667777777666654322 22  222333445567788


Q ss_pred             HHHHHHHHHHHHHcCcCCChhhHH---HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 006627          357 IDKAFELFIHMKVSKVRPNEVTMV---GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRL  433 (638)
Q Consensus       357 ~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  433 (638)
                      .+.+..+++.+.... .|. .-|.   .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus       540 ~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          540 QELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             hHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            888888888876531 222 2233   33457788899888888888887643 33333333334444556777777777


Q ss_pred             HHcCC-CCCchhHH--HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHH
Q 006627          434 FSEAI-YRDICMWN--AMMAGYGMHGCG-EEALIFFVDMERSGVKPNGITF  480 (638)
Q Consensus       434 ~~~~~-~~~~~~~~--~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~  480 (638)
                      ++.+. ..|...-.  .+.-+....|+. .+++.++..+..   .+|..+-
T Consensus       617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr  664 (963)
T 4ady_A          617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR  664 (963)
T ss_dssp             TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence            76554 23443332  333444444544 678888888864   4555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.89  E-value=0.0047  Score=47.05  Aligned_cols=72  Identities=10%  Similarity=-0.003  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-----P----LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      ....++..+...|+++.|..+++.+     +    -.+....+..+..++.+.|+++.|...++++++++|+++.+...+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            3344555555666666666665554     0    123467788888999999999999999999999999987765555


Q ss_pred             H
Q 006627          586 S  586 (638)
Q Consensus       586 ~  586 (638)
                      .
T Consensus        87 ~   87 (104)
T 2v5f_A           87 K   87 (104)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.87  E-value=0.0065  Score=59.98  Aligned_cols=84  Identities=10%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             HHhcCChHHHHHHHHhC------CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCc---chHHH
Q 006627          523 LGRAGLLDEAHEMIKSM------PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILE-----IEPQNY---GYNVL  584 (638)
Q Consensus       523 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~  584 (638)
                      +.+.|++++|.+++++.      -+.|+    ..+++.+..+|...|++++|+..++++++     +.|++|   ..+..
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44556666666666544      01222    24555666666666666666666666664     233333   34556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh
Q 006627          585 MSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       585 l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      |+.+|..+|++++|+.++++..
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Confidence            6666666666666666666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.69  E-value=0.014  Score=43.20  Aligned_cols=75  Identities=11%  Similarity=-0.009  Sum_probs=55.9

Q ss_pred             CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH
Q 006627          510 VPKIEHYGCMVDLLGRAGL---LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL  584 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  584 (638)
                      ++++..+..+..++...++   .++|..+++++ ...| ++..+..+...+...|++++|+..|+++++.+|. ......
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~   81 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT   81 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence            4456677777777765544   68888888877 4455 4677788888899999999999999999999998 444433


Q ss_pred             H
Q 006627          585 M  585 (638)
Q Consensus       585 l  585 (638)
                      +
T Consensus        82 i   82 (93)
T 3bee_A           82 I   82 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.64  E-value=0.092  Score=57.13  Aligned_cols=114  Identities=23%  Similarity=0.159  Sum_probs=78.4

Q ss_pred             HHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHH
Q 006627          319 MYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL  398 (638)
Q Consensus       319 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  398 (638)
                      .....|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3456788888888887764  457888899999999999999999987642         33455555557777766666


Q ss_pred             HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627          399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD  467 (638)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  467 (638)
                      -+.....|.      ++.-..+|.+.|++++|.+++                  ...+++++|..+-+.
T Consensus       730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence            655555441      233445566678888877765                  456777777776554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.45  E-value=0.0094  Score=45.34  Aligned_cols=67  Identities=9%  Similarity=-0.113  Sum_probs=56.2

Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIE-------PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      +..-...++..+...|+++.|...++++++..       +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            34556678889999999999999999999853       33467899999999999999999999998876544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.19  E-value=0.046  Score=42.36  Aligned_cols=76  Identities=16%  Similarity=-0.020  Sum_probs=47.8

Q ss_pred             CChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          511 PKIEHYGCMVDLLGRAGLLDE---AHEMIKSM-PLR-P--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       511 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      |+..+--.+..++.++.+..+   ++.++++. ... |  .......+.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            444444445555555554444   55555544 212 3  2344455667788889999999999999999998877766


Q ss_pred             HHH
Q 006627          584 LMS  586 (638)
Q Consensus       584 ~l~  586 (638)
                      +..
T Consensus       113 Lk~  115 (126)
T 1nzn_A          113 LER  115 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.97  E-value=0.15  Score=55.47  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=86.9

Q ss_pred             HHHhcCCHHHHHH-HHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627          350 AYAQAHCIDKAFE-LFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN  428 (638)
Q Consensus       350 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  428 (638)
                      .....+++++|.+ ++..+      |+......++..+.+.|..+.|.++.+.       |     ..-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCHH
Confidence            3345667777665 44111      1011225555666667777776655421       1     11133456678888


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627          429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG  508 (638)
Q Consensus       429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  508 (638)
                      +|.++.+.+  .+...|..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++.+..... |
T Consensus       670 ~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~  737 (814)
T 3mkq_A          670 LARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G  737 (814)
T ss_dssp             HHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence            888877655  3456788888888888888888888877542         333444444456666555544444331 1


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                            .++.-..+|.+.|++++|++++.++
T Consensus       738 ------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          738 ------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence                  1223334455566666666665554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.88  E-value=0.033  Score=44.20  Aligned_cols=103  Identities=11%  Similarity=0.050  Sum_probs=69.1

Q ss_pred             CCcHHHHHHHHHHHhccCcH------HHHHHHHHHHhhhcCCCCChh-HHHHHHH------HHHhcCChHHHHHHHHhC-
Q 006627          474 KPNGITFIGLLNACSHAGLV------TEGKSVFDKMVHGLGLVPKIE-HYGCMVD------LLGRAGLLDEAHEMIKSM-  539 (638)
Q Consensus       474 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-  539 (638)
                      +-|..+|-..+....+.|+.      ++..++|+++..  .++|+.. .|...+.      .+...++.++|.++|+.+ 
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            33567777777777777888      888889998887  6777531 1112221      223447888888888776 


Q ss_pred             C--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          540 P--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       540 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .  .+- ...|......-.++|+...|++++.+++.+.|...
T Consensus        88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            1  111 56666666667778888888888888888877743

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.86  E-value=0.027  Score=43.61  Aligned_cols=69  Identities=6%  Similarity=-0.074  Sum_probs=59.0

Q ss_pred             CCCHhhHHHHHHHHhhcCChHH---HHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          542 RPNMIVWGALLAASKLHKNPSM---GEIAATQILEIE-P-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       542 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|+..+-..+.+++.+.++...   ++.+++.++..+ | ........|+-.+++.|+|++|+++++.+.+..|
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            4788898999999998887655   999999999877 6 4567889999999999999999999999876544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.48  Score=39.27  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627          420 MYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV  499 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  499 (638)
                      .....|+++.|.++.+++  .+...|..|.......|+++-|.+.|.+...         +..+.-.|...|+.+.-.++
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            344556666666655544  3455666666666666666666666655332         22333334445555444444


Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627          500 FDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP  540 (638)
Q Consensus       500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  540 (638)
                      -+....+ |      -++.-..++.-.|+++++.+++.+.+
T Consensus        83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            3333221 1      12333344445666666666666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.044  Score=57.40  Aligned_cols=55  Identities=4%  Similarity=-0.112  Sum_probs=50.8

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      -...+...|+++.|+.+.++++..-|.+-..|..|+.+|...|+|+.|+-.+..+
T Consensus       343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3456677899999999999999999999999999999999999999999999877

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.49  E-value=0.02  Score=51.75  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HhhHHHHHHHHhh-cCCh
Q 006627          494 TEGKSVFDKMVHGLGLVPK---IEHYGCMVDLLGRA-----GLLDEAHEMIKSM-PLRPN--MIVWGALLAASKL-HKNP  561 (638)
Q Consensus       494 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~  561 (638)
                      ..|...+++..+   +.|+   ...|..++..|...     |+.++|.+.|+++ .+.|+  ..++..+...+.. .|+.
T Consensus       180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            445555555543   3454   34566666666663     7777777777776 45552  5666666666666 4788


Q ss_pred             HHHHHHHHHHhccCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          562 SMGEIAATQILEIEPQN-YGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       562 ~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                      ++|.+.+++++..+|.. |..  .    +...++-.+|..+++++
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~--~----lan~~~q~eA~~LL~~~  295 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHN--K----LLVILSQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSC--H----HHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCCCCCh--h----HHHHHHHHHHHHHHHHh
Confidence            88888888888877764 331  2    22333445555555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.25  E-value=0.79  Score=35.62  Aligned_cols=138  Identities=9%  Similarity=0.026  Sum_probs=84.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCccc---HHHHHHHHHHhcCCH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVI---LKTALVDMYAKCGDV  427 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~  427 (638)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+...+.++.+-+   -.|..   -...++.+|.+.+..
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~   90 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTL   90 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCC
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcch
Confidence            34467777777777776643   2444555555444444454554555544433   11211   123344455544432


Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627          428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL  507 (638)
Q Consensus       428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  507 (638)
                                    ...+...+..+...|+-++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ 
T Consensus        91 --------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-  154 (172)
T 1wy6_A           91 --------------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-  154 (172)
T ss_dssp             --------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             --------------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence                          233445567777888888888888886443 3788888888888888888888888888888775 


Q ss_pred             CCC
Q 006627          508 GLV  510 (638)
Q Consensus       508 ~~~  510 (638)
                      |++
T Consensus       155 G~k  157 (172)
T 1wy6_A          155 GEK  157 (172)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.22  E-value=4.1  Score=43.75  Aligned_cols=27  Identities=11%  Similarity=0.092  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627          139 SWSTMIRGYHRGGLPEEALEVMREMRF  165 (638)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (638)
                      -|..++.++.+.++.+.+.++|..+..
T Consensus       232 dy~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          232 DYLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466667777788888888888888763

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=1.1  Score=44.38  Aligned_cols=258  Identities=12%  Similarity=0.075  Sum_probs=117.6

Q ss_pred             CCchhHHHHHHHHHHC-----CCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh----hhcCC
Q 006627           50 NKPSSALNIYAFMRKN-----GSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM----YSECG  120 (638)
Q Consensus        50 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~  120 (638)
                      ++++.|++.+-.+.+.     +..........++..|...++++...+.+..+.+..-.. ......+++.    +....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            4555666555444321     112223345666677777777777766665554332111 1222222222    22222


Q ss_pred             Chh--HHHHHhccCC---CCC-------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCch
Q 006627          121 SLV--SARYLFDEMP---NRD-------VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADV  188 (638)
Q Consensus       121 ~~~--~a~~~~~~~~---~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~  188 (638)
                      ..+  .-..+.+...   +.-       ......|...+...|++.+|.+++..+...-...+....             
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------  175 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------  175 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence            221  1222222222   111       112356778888889999999998887642111111110             


Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-----C-C----cccHHHHHHHHHhCCChHH
Q 006627          189 DLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-----N-S----VVSWTVMISGYIRCNEINE  258 (638)
Q Consensus       189 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~  258 (638)
                                         -...+..-++.|...+++..|..++.++..     + +    ...|..++..+...+++.+
T Consensus       176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~  236 (445)
T 4b4t_P          176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE  236 (445)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence                               112223334444444444444444443321     0 0    1234445555555666666


Q ss_pred             HHHHHHHHHHc-CccCChHhHHH----HHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhc--CChHHHHH
Q 006627          259 GVRLFAEMIEE-NVFPSEITILS----LIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKC--REIRSART  331 (638)
Q Consensus       259 a~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~  331 (638)
                      |.+.|.+.... ....|...+..    ++.+..-.+....-..+.........-++...+..++.+|...  .+++...+
T Consensus       237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~  316 (445)
T 4b4t_P          237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQK  316 (445)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHH
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHH
Confidence            66665555432 11112221111    1111111222222223333333333335566778888888654  46777888


Q ss_pred             HHhcCCCCC
Q 006627          332 LFDGMKSKD  340 (638)
Q Consensus       332 ~~~~~~~~~  340 (638)
                      .|.....++
T Consensus       317 ~~~~~L~~~  325 (445)
T 4b4t_P          317 TYEPVLNED  325 (445)
T ss_dssp             HTCSSTTTC
T ss_pred             HHHHHhccc
Confidence            887765443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.84  E-value=0.2  Score=39.85  Aligned_cols=103  Identities=5%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             CCCchhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCcHH----HHHHHHH---HHhccCcHHHHHHHHHHHhh
Q 006627          439 YRDICMWNAMMAGYGMHGCG------EEALIFFVDMERSGVKPNGI----TFIGLLN---ACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       439 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~  505 (638)
                      ..|..+|-..+...-+.|++      ++..++|++.... ++|+..    .|..+--   .+...+++++|.++|+.+.+
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            44778888888888888888      8888888888875 577541    1211111   12344788899999998876


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627          506 GLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN  544 (638)
Q Consensus       506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  544 (638)
                      . .-.- ...|-.....-.|+|+...|.+++.+. +..|.
T Consensus        89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            4 2222 566666666678899999999998877 44443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.54  E-value=0.36  Score=38.09  Aligned_cols=76  Identities=12%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          510 VPKIEHYGCMVDLLGRAGLLD---EAHEMIKSM-PLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .|+..+--.+..++.++.+.+   +++.++++. ...|  .......+.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            567777777778888777554   566666665 2233  2445556667788888999999999999999998876655


Q ss_pred             HH
Q 006627          584 LM  585 (638)
Q Consensus       584 ~l  585 (638)
                      +.
T Consensus       116 Lk  117 (144)
T 1y8m_A          116 LK  117 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.34  E-value=0.14  Score=39.74  Aligned_cols=76  Identities=12%  Similarity=-0.048  Sum_probs=48.1

Q ss_pred             CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          510 VPKIEHYGCMVDLLGRAGLLD---EAHEMIKSM-PLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                      .|+..+--.+..++.++.+.+   +++.++++. ...|  ....+..+.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            355555555666777666543   456666555 2234  2455556666777788888888888888888887766555


Q ss_pred             HH
Q 006627          584 LM  585 (638)
Q Consensus       584 ~l  585 (638)
                      +.
T Consensus       117 Lk  118 (134)
T 3o48_A          117 LK  118 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.74  E-value=4.3  Score=37.65  Aligned_cols=170  Identities=9%  Similarity=0.040  Sum_probs=104.8

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCcCCHhhHHHHHHHhc
Q 006627          108 VSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEV----MREMRFMDIRPSEVAMISMVSLFA  183 (638)
Q Consensus       108 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~  183 (638)
                      .+.++..-|.+.+++++|++++-.           -...+.+.|+...+-++    ++.+.+.++++|..+...++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            344555567888899999888632           23345566776555444    466667788899888888888877


Q ss_pred             ccCch-----HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHH
Q 006627          184 DVADV-----DLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINE  258 (638)
Q Consensus       184 ~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  258 (638)
                      ....-     .-......+..+.|..+..++.....+...|.+.+++.+|...|-.-..++...|..++..+...+...+
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e  185 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT  185 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence            65532     2334445555565655555899999999999999999999988743222223455444444433332111


Q ss_pred             HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH
Q 006627          259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR  303 (638)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  303 (638)
                                    +|... ...+-.|...+++..|..+++...+
T Consensus       186 --------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          186 --------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             --------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                          11112 2223345556777777777666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.33  E-value=3  Score=34.56  Aligned_cols=99  Identities=9%  Similarity=0.053  Sum_probs=59.5

Q ss_pred             HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHH
Q 006627          320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLH  399 (638)
Q Consensus       320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  399 (638)
                      ....|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+...         +..+.-.|...|+.+...++-
T Consensus        15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence            44667777777777665  3456788888888888888888877776542         334444455566666655555


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627          400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS  435 (638)
Q Consensus       400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  435 (638)
                      +.....| .     ++.-...+.-.|+++++.++|.
T Consensus        84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence            4444444 1     2333334444566666665553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.78  E-value=5.9  Score=36.47  Aligned_cols=170  Identities=9%  Similarity=0.120  Sum_probs=104.1

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHH----HHHHhHHCCCcCCHhhHHHHHHHhc
Q 006627          108 VSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE----VMREMRFMDIRPSEVAMISMVSLFA  183 (638)
Q Consensus       108 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~~  183 (638)
                      .|.++..-|.+.+++++|++++..           -...+.+.|+...|-+    +++...+.+++++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            344555667778888888888642           2334556677665555    4566667788899888888888776


Q ss_pred             ccC-----chHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhC---CC
Q 006627          184 DVA-----DVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRC---NE  255 (638)
Q Consensus       184 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~  255 (638)
                      ...     ..+-......+..+.+..+..++.....+...|.+.|++.+|...|-.-...+...+..++.-+...   |.
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~  183 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE  183 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence            533     2234455555666665544558899999999999999999999877532212333444443333332   33


Q ss_pred             hHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH
Q 006627          256 INEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR  303 (638)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  303 (638)
                      ..++              |... ...+-.+...++...|..+++...+
T Consensus       184 ~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          184 DSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             cchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            2221              1111 1122234456788888877776543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.68  E-value=0.19  Score=48.68  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=57.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCcCCCCe
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE-----IRVKKEPGF  616 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  616 (638)
                      +...++.++...|+++++...++.++..+|-+...+..+..+|.+.|+..+|++.|+.+.+     -|+.|.|.+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3445667777889999999999999999999888999999999999999999999888754     366666543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.63  E-value=1.6  Score=34.47  Aligned_cols=69  Identities=6%  Similarity=-0.119  Sum_probs=44.9

Q ss_pred             CCCHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          542 RPNMIVWGALLAASKLHKN---PSMGEIAATQILEIEPQ-NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       542 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|+..+-..+.++..+..+   ..+++.+++.+....|. .......|+-.+++.|+|++|+++.+.+.+..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            4666666666666666553   44667777777776663 345566677777777777777777776655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.57  E-value=0.6  Score=38.01  Aligned_cols=121  Identities=14%  Similarity=0.102  Sum_probs=63.0

Q ss_pred             cCCCCcHH--HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 006627          471 SGVKPNGI--TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-------EHYGCMVDLLGRAGLLDEAHEMIKSM--  539 (638)
Q Consensus       471 ~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--  539 (638)
                      .|+.|...  ++..-+..+...|.++.|+-+.+.+....+..|+.       .++..+.+++...|++..|...|+++  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            35555443  34445566777788888887777765432333332       24455566667777777777776654  


Q ss_pred             --C---CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          540 --P---LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM  605 (638)
Q Consensus       540 --~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  605 (638)
                        .   ..|+..+  .+.    ....       ...-..+ +.+.+..+.++.||.+.|++++|+.+++.+
T Consensus        92 ~~k~l~k~~s~~~--~~~----~~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           92 QKKALSKTSKVRP--STG----NSAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHhcCCCccc--ccc----ccCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence              1   1111100  000    0000       0000111 223467788999999999999999999865

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.40  E-value=0.66  Score=36.06  Aligned_cols=70  Identities=7%  Similarity=-0.050  Sum_probs=31.9

Q ss_pred             CCcHHHHHHHHHHHhccCc---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627          474 KPNGITFIGLLNACSHAGL---VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN  544 (638)
Q Consensus       474 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  544 (638)
                      .|+..|--.+.+++.+..+   ..+++.+++++.+. +-.-....+..|.-++.+.|++++|.++.+.+ ...|+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            3444444444444444332   33455555555442 21112334444455555555555555555554 34443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.97  E-value=13  Score=36.58  Aligned_cols=95  Identities=11%  Similarity=0.089  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhh-cCCC--CC--hh
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERS--GVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHG-LGLV--PK--IE  514 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--p~--~~  514 (638)
                      ...|...+...|++.+|..++..+...  |..+..   ..+...++.|...+++..|..+++++... +...  |+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            356778888899999999999887642  222221   35666778899999999999999987431 1122  22  24


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      .+...+..+...+++.+|.+.|.++
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5667778888899999998888776

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.90  E-value=1.6  Score=42.13  Aligned_cols=66  Identities=8%  Similarity=-0.073  Sum_probs=32.8

Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHH-----HhCCCCChhH
Q 006627           42 LVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI-----KNGLDGDAYV  108 (638)
Q Consensus        42 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  108 (638)
                      ++..+...|++++++..+..+.... +.+...+..++.++.+.|+..+|.+.|+...     +.|+.|++.+
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3344445555555555555554432 3344455555555555555555555554442     2355555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.69  E-value=10  Score=35.10  Aligned_cols=169  Identities=12%  Similarity=0.069  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHHh
Q 006627          413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIF----FVDMERSGVKPNGITFIGLLNACS  488 (638)
Q Consensus       413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~  488 (638)
                      +|.++..-|.+.+++++|.+++-.           -...+.+.|+...|.++    ++-..+.++++|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345556668888999999987643           23445566666554444    455667788888888888887776


Q ss_pred             ccCcHH-HHHHHHHHHhh---hcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChH
Q 006627          489 HAGLVT-EGKSVFDKMVH---GLGL--VPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       489 ~~~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  562 (638)
                      ....-+ .=..+.+++++   ++|-  .-++.....+...|.+.|++.+|...|- .+..+++..+-.++.-+...+.  
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--  182 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--  182 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence            544311 11223333221   1232  2356677778889999999999988874 3434444555444433333322  


Q ss_pred             HHHHHHHHHhccCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          563 MGEIAATQILEIEPQNYGYNVL-MSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                                   |.....+.. .+--|.-.++...|..+++...+.
T Consensus       183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~  216 (336)
T 3lpz_A          183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA  216 (336)
T ss_dssp             -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                         333333333 233477889999999988777653

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.46  E-value=11  Score=34.79  Aligned_cols=170  Identities=8%  Similarity=-0.048  Sum_probs=103.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCccCChHhHHHHHHH
Q 006627          209 VAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRL----FAEMIEENVFPSEITILSLIIE  284 (638)
Q Consensus       209 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~  284 (638)
                      ...+..+..-|.+.+++++|.+++..           -...+.+.|+...|.++    ++...+.+++++..+...++..
T Consensus        33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           33 HQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34556777778888999999987643           23456667887777765    4555566899999888888887


Q ss_pred             hcccCChh-hHHHHHHHHHH----hcC--CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhc---
Q 006627          285 CGFVGGLQ-LGKWLHAYILR----NGF--EFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQA---  354 (638)
Q Consensus       285 ~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---  354 (638)
                      +......+ .-.++++.+++    .|-  .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...   
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~  181 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD  181 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence            76643222 23455555544    221  236677888888888889998888877532222344444444433333   


Q ss_pred             CCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 006627          355 HCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK  404 (638)
Q Consensus       355 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  404 (638)
                      |...++-              ...-..++ -|...++...|..+++...+
T Consensus       182 ~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          182 IEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred             CCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence            3333221              11112222 23456777888777776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.03  E-value=1.8  Score=35.23  Aligned_cols=27  Identities=11%  Similarity=0.070  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSMP  540 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  540 (638)
                      +.-..+..|+.+.|++++|+.+++.++
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            333345566666666666666666654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.22  E-value=12  Score=42.20  Aligned_cols=53  Identities=17%  Similarity=0.113  Sum_probs=34.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHM  367 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  367 (638)
                      ..++..+...+..+.+.++..-... ++...-.+..++...|++++|.+.|++.
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3455566667777777666554443 3333345566777888888888888764

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.08  E-value=2.3  Score=37.83  Aligned_cols=51  Identities=12%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      ..+.|+++++++....-++  .-+-|...-..|+..+|-.|+++.|.+-++..
T Consensus         7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~   57 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS   57 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3445555555555555444  33334444445555555555555555554444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.70  E-value=4.1  Score=36.27  Aligned_cols=119  Identities=11%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh----HHHHHHHHHHhc
Q 006627          451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE----HYGCMVDLLGRA  526 (638)
Q Consensus       451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~  526 (638)
                      ...+.|+.++|+..+..-++.. +-|...-..+++.+|-.|++++|.+-++...+   +.|+..    .|..+|.+    
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a----   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA----   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence            4556788888888888877764 55777788888999999999999988887764   345433    33333332    


Q ss_pred             CChHHHHH-HHHhC--C-CCCCHhhH-HHHHHHH--hhcCChHHHHHHHHHHhccCCCCcc
Q 006627          527 GLLDEAHE-MIKSM--P-LRPNMIVW-GALLAAS--KLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       527 g~~~~A~~-~~~~~--~-~~p~~~~~-~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                         +...+ +|.--  + +.-.+..| ..++.+.  ...|+.++|...-.++++.-|..+.
T Consensus        78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence               11222 12111  1 11122223 3344443  3468888888888888888776554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.54  E-value=19  Score=37.85  Aligned_cols=50  Identities=12%  Similarity=-0.098  Sum_probs=25.9

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKM  503 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  503 (638)
                      +...|+++.|+++.++....  .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33445555555555555543  232 345555555555555555555555444

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=86.29  E-value=3  Score=30.41  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      =++.+-++.+....+-|++......+++|.+.+++..|.++++-++.+  ..+...+|..+++
T Consensus        27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq   87 (109)
T 1v54_E           27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence            345556666667778889988888999999999999999998888764  3333456666653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.16  E-value=22  Score=34.05  Aligned_cols=163  Identities=12%  Similarity=-0.019  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHhccCchHHHHHHHHHHHHhC--C--CCcccHHHHHHHHHHhcC-CHHHHHHHHHcCCC---CCchhH---
Q 006627          377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L--EVDVILKTALVDMYAKCG-DVNGAYRLFSEAIY---RDICMW---  445 (638)
Q Consensus       377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---  445 (638)
                      .....|...|.+.|+.++..+++...+..=  +  .-...+...+++.+.... ..+.-.++..+..+   ..-.+|   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566677777787777777766554310  0  012334455666665532 33333333333321   122233   


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHHHhhhc-CCCCChhHH
Q 006627          446 ---NAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-----ITFIGLLNACSHAGLVTEGKSVFDKMVHGL-GLVPKIEHY  516 (638)
Q Consensus       446 ---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~  516 (638)
                         .-++..|...|++.+|.+++.++.+.=-..|.     ..+..-++.|...+++.++...+....... .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               14666777777777777777777653112121     234555566777777777777777665421 121332221


Q ss_pred             ----HHHHHHHH-hcCChHHHHHHHHhC
Q 006627          517 ----GCMVDLLG-RAGLLDEAHEMIKSM  539 (638)
Q Consensus       517 ----~~l~~~~~-~~g~~~~A~~~~~~~  539 (638)
                          ..-+..+. ..+++.+|...|-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence                12223344 567777777776553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.94  E-value=25  Score=33.66  Aligned_cols=125  Identities=9%  Similarity=0.072  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHhcCCCC--------CchhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCcCCChhhHH-
Q 006627          311 AMANALVDMYGKCREIRSARTLFDGMKSK--------DVMIWNAVISAYAQAH-CIDKAFELFIHMKVSKVRPNEVTMV-  380 (638)
Q Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~-  380 (638)
                      .....|...|.+.|+.++..+++.....-        .......++..+.... ..+.-.++..+..+.. .-+..+|- 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34566777888888888888877766531        1223344555554432 2333333333332211 01112221 


Q ss_pred             -----HHHHHHhccCchHHHHHHHHHHHHhCCCCc-----ccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627          381 -----GLLSLCTEAGALEMGKWLHTYIEKQGLEVD-----VILKTALVDMYAKCGDVNGAYRLFSE  436 (638)
Q Consensus       381 -----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~  436 (638)
                           .+...|...|++.+|.+++..+.+.--..|     ..++-.-+..|...+++..+...+..
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~  164 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS  164 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                 344555566666666666555554211111     12233334445555555555555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.29  E-value=3.8  Score=29.93  Aligned_cols=60  Identities=12%  Similarity=-0.003  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627           54 SALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ  114 (638)
Q Consensus        54 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  114 (638)
                      +...-++.+.....-|++....+.|++|.+.+++..|.++++.++..- .+...+|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            344444444455556666666666666666666666666666665432 222344544443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.25  E-value=9.9  Score=27.60  Aligned_cols=87  Identities=16%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER  470 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  470 (638)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+....||...|.+|..  .+.|-.+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45667777666666542  22222222445677899999999888888888888877644  466777777777777777


Q ss_pred             cCCCCcHHHHHH
Q 006627          471 SGVKPNGITFIG  482 (638)
Q Consensus       471 ~~~~p~~~~~~~  482 (638)
                      +| .|....|..
T Consensus        97 sg-~p~~q~Fa~  107 (115)
T 2uwj_G           97 SS-DPALADFAA  107 (115)
T ss_dssp             CS-SHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            76 565555443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.57  E-value=11  Score=27.46  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER  470 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  470 (638)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+....||...|.+|..  .+.|-.+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45667666666666542  22222222445677888999998888888888888877654  356777777777767776


Q ss_pred             cCCCCcHHHHH
Q 006627          471 SGVKPNGITFI  481 (638)
Q Consensus       471 ~~~~p~~~~~~  481 (638)
                      +| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            66 55555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.36  E-value=14  Score=41.65  Aligned_cols=52  Identities=4%  Similarity=-0.079  Sum_probs=26.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627          448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV  504 (638)
Q Consensus       448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  504 (638)
                      ++..+...+.++.+.++...     .+-++..-..+..++...|++++|.++|++..
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa  869 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  869 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            44445555555555443322     12233333344555666666666666666654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=80.13  E-value=27  Score=29.74  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=37.8

Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006627          409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS  488 (638)
Q Consensus       409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  488 (638)
                      ++..+-...+.++.+.+..+....+.+.+..++...-...+.++...++. ++...+..+.+   .++...-...+.++.
T Consensus        93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~  168 (211)
T 3ltm_A           93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG  168 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence            34444444444555555443333333333344444444444444444442 23333333331   344444444444444


Q ss_pred             ccCcHHHHHHHHHHHh
Q 006627          489 HAGLVTEGKSVFDKMV  504 (638)
Q Consensus       489 ~~~~~~~a~~~~~~~~  504 (638)
                      +.+. ..+...+..+.
T Consensus       169 ~~~~-~~~~~~L~~~l  183 (211)
T 3ltm_A          169 EIGG-ERVRAAMEKLA  183 (211)
T ss_dssp             HHCS-HHHHHHHHHHH
T ss_pred             HhCc-hhHHHHHHHHH
Confidence            4443 23333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	638
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.18
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.15
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.6
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.58
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.39
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.27
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.08
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.94
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.91
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.55
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.46
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.03
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.6
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.3
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.55
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.37
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.94
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.53
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.99
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.62

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-21  Score=193.76  Aligned_cols=369  Identities=11%  Similarity=0.040  Sum_probs=249.8

Q ss_pred             HHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHH
Q 006627          219 YSKCGNLAYAKQLFNRLNQ--N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGK  295 (638)
Q Consensus       219 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  295 (638)
                      +.+.|++++|.+.++++.+  | +...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccc
Confidence            3344444444444444432  1 22334444444445555555555555444431 112234444444455555555555


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 006627          296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGM---KSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKV  372 (638)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  372 (638)
                      ..+....+.... +..............+....+.......   ..................+....+...+.+..... 
T Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  165 (388)
T d1w3ba_          88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-  165 (388)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-
Confidence            555544443321 1222222222222233333222222221   12233444455556666777777777777765542 


Q ss_pred             CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHH
Q 006627          373 RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMM  449 (638)
Q Consensus       373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~  449 (638)
                      +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...+++..   ..+...+..+.
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            2344566666777888888888888888887765 5566778888888999999999998887755   34556777888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCCh
Q 006627          450 AGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLL  529 (638)
Q Consensus       450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  529 (638)
                      ..+...|++++|+..+++..+.. +-+..++..+..++...|++++|.+.++....  ..+.+...+..+..++...|++
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCH
Confidence            88999999999999999988763 44567888899999999999999999999887  4566778888899999999999


Q ss_pred             HHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627          530 DEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR  594 (638)
Q Consensus       530 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  594 (638)
                      ++|++.++++ ...|+ ..++..+...+...|++++|+..++++++++|+++.++..+|.+|.+.||
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999987 55664 67888899999999999999999999999999999999999999998886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-20  Score=185.97  Aligned_cols=357  Identities=10%  Similarity=0.031  Sum_probs=291.4

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC
Q 006627          246 MISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCRE  325 (638)
Q Consensus       246 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (638)
                      +...+.+.|++++|.+.++++.+.. +-+...+..+...+...|++++|...++...+.. |.+...+..+...|...|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            4456778899999999999998763 2245677888888999999999999999998875 4466788899999999999


Q ss_pred             hHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHH
Q 006627          326 IRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYI  402 (638)
Q Consensus       326 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  402 (638)
                      +++|...+......   +..............+....+........... .................+....+...+...
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence            99999999887643   33344444455555666666666665554443 333344445555666777888888888877


Q ss_pred             HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627          403 EKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT  479 (638)
Q Consensus       403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  479 (638)
                      .... +.+...+..+...+...|++++|...+++..   ..+...|..+...+...|++++|+..+++....+ +.+...
T Consensus       162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            7765 5667788888999999999999999998765   3356788889999999999999999999998875 556778


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhh
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKL  557 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~  557 (638)
                      +..+...+.+.|++++|...|+++.+  -.+.+...+..+..++...|++++|.+.++..  ..+.+...+..+...+..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            88899999999999999999999986  33445678889999999999999999999887  334567888889999999


Q ss_pred             cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627          558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR  609 (638)
Q Consensus       558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  609 (638)
                      .|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999887643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-14  Score=138.96  Aligned_cols=241  Identities=12%  Similarity=-0.021  Sum_probs=160.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627          346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG  425 (638)
Q Consensus       346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (638)
                      .....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+.+..+.. |.+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            44566778888888888888877653 2245567777778888888888888888887765 556677777777788888


Q ss_pred             CHHHHHHHHHcCCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627          426 DVNGAYRLFSEAIYRDIC---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK  502 (638)
Q Consensus       426 ~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  502 (638)
                      ++++|.+.+++....++.   .+.......                    ...+.......+..+...+.+.+|.+.+.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            888887777664421111   000000000                    000000111112223344556777777777


Q ss_pred             HhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          503 MVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       503 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      +.+.....++...+..+...+...|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|+++.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            6654333445566777778888888888888888776 3344 4677777888888888888888888888888888888


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          581 YNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      ++..+|.+|.+.|++++|++.|++..+.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            8888888888888888888888877653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.2e-14  Score=133.42  Aligned_cols=267  Identities=10%  Similarity=-0.037  Sum_probs=195.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC
Q 006627          314 NALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG  390 (638)
Q Consensus       314 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  390 (638)
                      ......+.+.|++++|...|+++.+.   +..+|..+..++...|++++|+..+.+..+.. +-+...+..+...+...|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            35667788999999999999997643   56688999999999999999999999987753 234567777888999999


Q ss_pred             chHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGLEVDVI-LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDME  469 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~  469 (638)
                      +++.|.+.++.+....  |+.. ..........                ..+.......+..+...+.+.+|...+.+..
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999988754  2211 1110000000                0000111111223344556778888888877


Q ss_pred             HcCC-CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHh
Q 006627          470 RSGV-KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMI  546 (638)
Q Consensus       470 ~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  546 (638)
                      +... .++...+..+...+...|++++|...+++....  .+-+...|..++.++.+.|++++|.+.++++ ...| +..
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            6532 235677888888999999999999999999863  3345678889999999999999999999987 4455 477


Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch-----------HHHHHHHHHhcCCHHHHHHH
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY-----------NVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~  601 (638)
                      +|..++.++...|++++|+..|+++++++|++...           +..+..++...|+.+.+...
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            89999999999999999999999999999987654           34566777777776655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.4e-09  Score=101.37  Aligned_cols=162  Identities=14%  Similarity=-0.020  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-----hhH
Q 006627          445 WNAMMAGYGMHGCGEEALIFFVDMERSGVK----PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-----IEH  515 (638)
Q Consensus       445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~  515 (638)
                      +..+...+...|+++.+...++........    ....++......+...+++..+...+.+.........+     ...
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            334455566666777776666666543211    12234444555566667777776666655432111111     123


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHhhHHHHHHHHhhcCChHHHHHHHHHHhc------cCCCCcchHH
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-----NMIVWGALLAASKLHKNPSMGEIAATQILE------IEPQNYGYNV  583 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~  583 (638)
                      +..+...+...|++++|...+++. ...|     ....+..+..++...|++++|...+++++.      ..|.....+.
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  295 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  295 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence            444555666777777777777766 2111     123344556677777777777777777763      3445556677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 006627          584 LMSNIYAVANRWNDVAGVRRVMK  606 (638)
Q Consensus       584 ~l~~~~~~~g~~~~A~~~~~~~~  606 (638)
                      .++.+|...|++++|.+.+++..
T Consensus       296 ~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         296 LLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            77777888888888877777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.1e-10  Score=106.09  Aligned_cols=225  Identities=12%  Similarity=0.071  Sum_probs=171.6

Q ss_pred             hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHHcCC---CCCchhHHHHHHHHH
Q 006627          378 TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG-DVNGAYRLFSEAI---YRDICMWNAMMAGYG  453 (638)
Q Consensus       378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~  453 (638)
                      .++.+-..+.+.+..++|.+.++.+.+.+ |-+...|+....++...| ++++|+..+++..   ..+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            45555566778889999999999999987 677778888888888876 4899999998866   346778888889999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC-----
Q 006627          454 MHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL-----  528 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----  528 (638)
                      ..|++++|+..++++.+.. +-+...|..+...+...|++++|++.++++++.  .+.+...|+.+..++.+.|.     
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhh
Confidence            9999999999999999874 456788999999999999999999999999863  33456677777777766655     


Q ss_pred             -hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhc--CCHHHHHHH
Q 006627          529 -LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG--YNVLMSNIYAVA--NRWNDVAGV  601 (638)
Q Consensus       529 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~  601 (638)
                       +++|++.+.++ ...| +...|..+...+.. ...+++...++++.+++|+...  .+..++.+|...  ++.+.+...
T Consensus       201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~  279 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI  279 (315)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence             56788887776 4455 56777777666544 4467888899999888887543  455677776554  666677777


Q ss_pred             HHHHhh
Q 006627          602 RRVMKE  607 (638)
Q Consensus       602 ~~~~~~  607 (638)
                      +++..+
T Consensus       280 ~~ka~~  285 (315)
T d2h6fa1         280 LNKALE  285 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.5e-10  Score=105.55  Aligned_cols=219  Identities=8%  Similarity=-0.086  Sum_probs=114.1

Q ss_pred             CHHHHHHHHHHHHHcCc-CC--ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627          356 CIDKAFELFIHMKVSKV-RP--NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR  432 (638)
Q Consensus       356 ~~~~a~~~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  432 (638)
                      +.+.++.-+++...... .+  ...++..+...+.+.|+++.|...|+...+.. |.++.++..+..+|.+.|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            34555556666554321 11  11244444556667777777777777777665 5566667777777777777777777


Q ss_pred             HHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627          433 LFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL  509 (638)
Q Consensus       433 ~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  509 (638)
                      .|+++.  .| +..++..+..++...|++++|...+++..+.. +.+......+..++.+.+..+.+..+......   .
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  168 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S  168 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence            776655  22 44566666667777777777777777766653 23333333333344444444444444443332   1


Q ss_pred             CCChhHHHHHHHHHHhcC----ChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627          510 VPKIEHYGCMVDLLGRAG----LLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG  580 (638)
Q Consensus       510 ~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  580 (638)
                      .+....+. ++..+....    ..+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            12111121 111221111    112222211111 11122 234555666666667777777777777777776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.1e-10  Score=102.86  Aligned_cols=226  Identities=9%  Similarity=0.030  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627          342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAG-ALEMGKWLHTYIEKQGLEVDVILKTALVD  419 (638)
Q Consensus       342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  419 (638)
                      ..++.+...+.+.+.+++|+++++++.+.  .|+.. .|.....++...| ++++|...++...+.. +-+..+|..+..
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            35667777888899999999999999885  56554 5666666667766 5899999999999887 778899999999


Q ss_pred             HHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-----
Q 006627          420 MYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG-----  491 (638)
Q Consensus       420 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----  491 (638)
                      .+.+.|++++|+..++++.   ..+...|..+...+...|++++|++.++++++.. +-+...|..+...+.+.+     
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            9999999999999999877   3467899999999999999999999999999875 445667776666554443     


Q ss_pred             -cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhHHHHHHHHhh--cCChHHH
Q 006627          492 -LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVWGALLAASKL--HKNPSMG  564 (638)
Q Consensus       492 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~--~~~~~~A  564 (638)
                       .+++|.+.+.++.+.  .+.+...|..+...+... ..+++.+.++.. ...|   +...+..+...+..  .++.+.+
T Consensus       200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             468899999988863  344566777776665544 456676666655 2233   34455555555433  2455555


Q ss_pred             HHHHHHHhcc
Q 006627          565 EIAATQILEI  574 (638)
Q Consensus       565 ~~~~~~~~~~  574 (638)
                      ...++++.++
T Consensus       277 ~~~~~ka~~l  286 (315)
T d2h6fa1         277 EDILNKALEL  286 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=6.8e-10  Score=101.03  Aligned_cols=217  Identities=10%  Similarity=-0.084  Sum_probs=149.3

Q ss_pred             chHHHHHHHHHHHHhCC-CC--cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGL-EV--DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIF  464 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~  464 (638)
                      +.+.+..-++++..... .+  ...++..+..+|.+.|++++|...|++..   ..++.+|+.+..++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34445555555554321 11  23567777889999999999999998876   34778899999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 006627          465 FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP  543 (638)
Q Consensus       465 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  543 (638)
                      |+++.+.. +-+..++..+..++...|++++|.+.+++..+.  .+.+......+..++.+.+..+.+..+.... ...+
T Consensus        94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            99999864 334578888999999999999999999999873  2334444444455556666555555544433 1122


Q ss_pred             CHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          544 NMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       544 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      ....+. ++..+..    .+..+.+...+.......|+....+..+|.+|...|++++|.+.|++..+..+.
T Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            222221 2222221    223444555555555677777788999999999999999999999988765543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1e-08  Score=95.52  Aligned_cols=186  Identities=9%  Similarity=0.030  Sum_probs=128.7

Q ss_pred             chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-C-chhHHHHHHHHHhcCChHHHHHHHH
Q 006627          391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-D-ICMWNAMMAGYGMHGCGEEALIFFV  466 (638)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~  466 (638)
                      ..+.+..++++..+...+.+...+...+..+.+.|+++.|..+|+++..  | + ...|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4567777777777654455566777777778888888888888877552  2 2 2357777777778888888888888


Q ss_pred             HHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 006627          467 DMERSGVKPNGITFIGLLNA-CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM----PL  541 (638)
Q Consensus       467 ~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  541 (638)
                      ++.+.+ +.+...|...... +...|+.+.|..+|+.+.+.  .+.+...|...+..+.+.|+.++|..+|++.    +.
T Consensus       159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            877654 3333444443332 33457788888888888763  4445677777788888888888888888776    23


Q ss_pred             CCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          542 RPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       542 ~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                      .|.  ...|...+..-..+|+.+.+..+++++.++.|+..
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            332  34677777777777888888888888888777653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=5.6e-10  Score=105.91  Aligned_cols=234  Identities=8%  Similarity=-0.067  Sum_probs=169.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhcc--CchHHHHHHHHHHHHhCCCCcccHH-HHHHHHHHhcCCHH
Q 006627          352 AQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEA--GALEMGKWLHTYIEKQGLEVDVILK-TALVDMYAKCGDVN  428 (638)
Q Consensus       352 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~  428 (638)
                      ...|++++|+..++...... +-+...+..+..++...  ++.+.+...++.+.+.. +++...+ ......+...++++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            34455788899898877643 22444555555454444  45889999999998876 4445444 44557777889999


Q ss_pred             HHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          429 GAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       429 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      +|+..++.+...   +...|+.+..++...|++++|...+++....  .|+.   ..+...+...+..+++...+.....
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence            999999988844   5567888888999999988887666554433  2222   1223334555667778888887765


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627          506 GLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV  583 (638)
Q Consensus       506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  583 (638)
                        ..+++...+..++..+...|+.++|.+.+.+. ...| +..++..++..+...|++++|...++++++++|.+...|.
T Consensus       237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence              34455555666777888889999999999877 5556 4678888899999999999999999999999999888999


Q ss_pred             HHHHHHHhcCC
Q 006627          584 LMSNIYAVANR  594 (638)
Q Consensus       584 ~l~~~~~~~g~  594 (638)
                      .|+..+.....
T Consensus       315 ~L~~~~~~e~~  325 (334)
T d1dcea1         315 DLRSKFLLENS  325 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhHhhH
Confidence            99888875433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.3e-10  Score=110.38  Aligned_cols=248  Identities=8%  Similarity=-0.090  Sum_probs=178.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCcCCChhh-HH---HHHHH-------HhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627          353 QAHCIDKAFELFIHMKVSKVRPNEVT-MV---GLLSL-------CTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY  421 (638)
Q Consensus       353 ~~~~~~~a~~~~~~m~~~g~~p~~~~-~~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (638)
                      ..+..++|++++++..+.  .|+..+ |+   .++..       +...|.++.|..+++...+.. |.+...+..+..++
T Consensus        41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~  117 (334)
T d1dcea1          41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence            334457888888887653  465543 22   12222       233456788889999988876 66777777777777


Q ss_pred             HhcCC--HHHHHHHHHcCC---CCCchhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627          422 AKCGD--VNGAYRLFSEAI---YRDICMWNA-MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       422 ~~~~~--~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~  495 (638)
                      ...++  +++|...+.++.   .++...+.. ....+...+.+++|+..++++.+.. +-+...|..+..++...|++++
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence            76654  789999888875   234455543 4466777899999999999988764 4466788888889999999888


Q ss_pred             HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627          496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE  573 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  573 (638)
                      |...++.....   .|+   ...+...+...+..+++...+...  ..+++...+..+...+...|+.++|...+.++++
T Consensus       197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  270 (334)
T d1dcea1         197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP  270 (334)
T ss_dssp             SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            76665554431   111   112334455667777787777765  2333455566667777888999999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          574 IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       574 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+|++..++..++.+|...|++++|.++++++.+..|
T Consensus       271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999999876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.5e-08  Score=94.39  Aligned_cols=184  Identities=8%  Similarity=-0.050  Sum_probs=144.5

Q ss_pred             CCHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 006627          425 GDVNGAYRLFSEAI----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF  500 (638)
Q Consensus       425 ~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  500 (638)
                      +..++|..+|++..    ..+...|...+..+...|+++.|..+++++.+.........|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577888887754    23556788888889999999999999999987532223457888999999999999999999


Q ss_pred             HHHhhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627          501 DKMVHGLGLVPKIEHYGCMVDL-LGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       501 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      +++.+  ..+.+...|...... +...|+.+.|..+|+.+ . .+.+...|..++......|+++.|+.+|+++++..|.
T Consensus       158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99986  333344555544443 34468999999999988 2 3345788999999999999999999999999998776


Q ss_pred             Ccc----hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          578 NYG----YNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       578 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      ++.    .|..+...-...|+.+.+..+++++.+.-+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            543    677788888888999999999999876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.9e-08  Score=95.98  Aligned_cols=285  Identities=7%  Similarity=-0.090  Sum_probs=177.1

Q ss_pred             HHHHHhcCChHHHHHHHhcCCC--C-C-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-CCC----hhhHHHHH
Q 006627          317 VDMYGKCREIRSARTLFDGMKS--K-D-----VMIWNAVISAYAQAHCIDKAFELFIHMKVSKV-RPN----EVTMVGLL  383 (638)
Q Consensus       317 ~~~~~~~~~~~~A~~~~~~~~~--~-~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll  383 (638)
                      ...+...|++++|...+++..+  | +     ...+..+...+...|++++|+..+++...... .++    ...+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3444556666666666654321  1 1     12455556667777777777777776543211 111    12333444


Q ss_pred             HHHhccCchHHHHHHHHHHHHh----CCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCCC----C----CchhHHHH
Q 006627          384 SLCTEAGALEMGKWLHTYIEKQ----GLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAIY----R----DICMWNAM  448 (638)
Q Consensus       384 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~l  448 (638)
                      ..+...|++..+...+......    +.+..   ...+..+...+...|+++.+...+.....    .    ....+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5666777777777776665431    11111   23445566777788888888877765431    1    22344555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC--ChhHHHHHH
Q 006627          449 MAGYGMHGCGEEALIFFVDMERS----GVKPN--GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP--KIEHYGCMV  520 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~  520 (638)
                      ...+...++...+...+.+....    +..+.  ...+..+...+...|++++|...++.........+  ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            66677788888888877765542    11111  13455566677889999999999988765311111  234456678


Q ss_pred             HHHHhcCChHHHHHHHHhC-------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---------cchHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN---------YGYNV  583 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~  583 (638)
                      .++...|++++|...++++       +..|+ ..++..+...+...|++++|...+++++++.+..         ...+.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~  338 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA  338 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence            8899999999999998876       33343 4567778889999999999999999998865532         12334


Q ss_pred             HHHHHHHhcCCHHHHHHH
Q 006627          584 LMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       584 ~l~~~~~~~g~~~~A~~~  601 (638)
                      .+...+...++.+++.+.
T Consensus       339 ~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         339 QQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHhcCCChHHHHH
Confidence            455556677777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.5e-08  Score=87.77  Aligned_cols=117  Identities=6%  Similarity=-0.166  Sum_probs=67.1

Q ss_pred             CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHH
Q 006627          475 PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALL  552 (638)
Q Consensus       475 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  552 (638)
                      |+...+......+.+.|++++|+..|+++++.  .+.+...|..++.+|.+.|++++|+..++++ ...|+ ..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            55555556666666666666666666666542  2334455556666666666666666666555 44443 45555666


Q ss_pred             HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627          553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN  593 (638)
Q Consensus       553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  593 (638)
                      .++...|++++|+..++++++++|++...+...++.+...+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            66666666666666666666666654444444444444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.4e-08  Score=77.30  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627          521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV  598 (638)
Q Consensus       521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  598 (638)
                      ..+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence            3444455555555555544 2222 3444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhh
Q 006627          599 AGVRRVMKE  607 (638)
Q Consensus       599 ~~~~~~~~~  607 (638)
                      +..|++..+
T Consensus        91 ~~~~~~a~~   99 (117)
T d1elwa_          91 KRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.7e-08  Score=76.21  Aligned_cols=106  Identities=14%  Similarity=0.021  Sum_probs=87.9

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN  560 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  560 (638)
                      -...+...|++++|+..|+++++  -.+.+...|..+..++...|++++|++.+.++ ...| ++..|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            34567788888888888888886  34456677888888888889999999888887 3344 67889999999999999


Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      +++|+..++++++++|+++.++..+..+-.
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999888877643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.71  E-value=2.4e-08  Score=76.56  Aligned_cols=88  Identities=13%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          518 CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      .++..+.+.|++++|+..++++ ...| ++.+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            4567788899999999999887 4455 5889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 006627          596 NDVAGVRRVM  605 (638)
Q Consensus       596 ~~A~~~~~~~  605 (638)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.2e-08  Score=81.45  Aligned_cols=124  Identities=14%  Similarity=-0.032  Sum_probs=90.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL  528 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  528 (638)
                      ...+...|++++|++.|+++    .+|+..++..+..++...|++++|.+.|++.++.  -+.....|..+..++.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence            44566778888888888753    2567777888888888888888888888888762  33456777788888888888


Q ss_pred             hHHHHHHHHhC--CCCCC----------------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627          529 LDEAHEMIKSM--PLRPN----------------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN  578 (638)
Q Consensus       529 ~~~A~~~~~~~--~~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  578 (638)
                      +++|++.|++.  ..+++                ..++..+..++...|++++|.+.+++++++.|+.
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            88888888775  11111                2345556677778888888888888888888874

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.8e-08  Score=85.99  Aligned_cols=93  Identities=6%  Similarity=-0.133  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHH
Q 006627          443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVD  521 (638)
Q Consensus       443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~  521 (638)
                      ..+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++++   +.| +...|..++.
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg~   80 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQ   80 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHHH
Confidence            334444555566666666666666655543 33445555666666666666666666666653   233 3445555666


Q ss_pred             HHHhcCChHHHHHHHHhC
Q 006627          522 LLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~  539 (638)
                      +|.+.|++++|+..|+++
T Consensus        81 ~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            666666666666666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.8e-07  Score=76.88  Aligned_cols=148  Identities=13%  Similarity=-0.016  Sum_probs=116.6

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK  497 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  497 (638)
                      ...+...|+++.|++.|.++..++..+|..+..++...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4457788999999999999988899999999999999999999999999999875 456678999999999999999999


Q ss_pred             HHHHHHhhhcC-----------CC--CC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChH
Q 006627          498 SVFDKMVHGLG-----------LV--PK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       498 ~~~~~~~~~~~-----------~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~  562 (638)
                      +.|++......           ..  ++ ..++..+..++.+.|++++|.+.+..+ ...|+.           .++..+
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~~  159 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKID  159 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHHH
Confidence            99999875211           11  11 255667888999999999999999887 555653           233455


Q ss_pred             HHHHHHHHHhccCCC
Q 006627          563 MGEIAATQILEIEPQ  577 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~  577 (638)
                      .|+..+.+....+|.
T Consensus       160 ~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         160 KAMECVWKQKLYEPV  174 (192)
T ss_dssp             HHHHHHHTTCCCCCC
T ss_pred             HHHHHHHhhhhCCcc
Confidence            666666666666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.2e-07  Score=78.11  Aligned_cols=117  Identities=8%  Similarity=-0.047  Sum_probs=96.6

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN  560 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  560 (638)
                      ....|.+.|++++|...|+++++.  .+.+...|..+..++...|++++|.+.|+++ ...| +..+|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            345678899999999999998873  3456678888899999999999999999887 4455 46889999999999999


Q ss_pred             hHHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCCHHHHHHH
Q 006627          561 PSMGEIAATQILEIEPQNYGYNVLMSNIY--AVANRWNDVAGV  601 (638)
Q Consensus       561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~  601 (638)
                      +++|...++++++++|+++.++..+..+.  ...+.+++|...
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999988887764  444567777654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.7e-07  Score=86.12  Aligned_cols=122  Identities=11%  Similarity=-0.032  Sum_probs=54.2

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc--HHHHHHH
Q 006627          418 VDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERSG---VKPN--GITFIGL  483 (638)
Q Consensus       418 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l  483 (638)
                      ...|...+++++|.+.|.+...     .+    ..+|..+..+|.+.|++++|++.+++..+..   -.+.  ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            3455566666666666554321     11    1345555555555555555555555443210   0111  1233333


Q ss_pred             HHHHh-ccCcHHHHHHHHHHHhhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          484 LNACS-HAGLVTEGKSVFDKMVHGL---GLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       484 ~~~~~-~~~~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      ...|. ..|++++|.+.++++.+-.   +.++. ..++..++..+...|++++|.+.++++
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~  184 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            33442 2355555555555543210   11110 123444455555555555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=3.7e-07  Score=83.79  Aligned_cols=169  Identities=10%  Similarity=-0.070  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh----CCCC-cccHHHHHHHHHHhcCCHHHH
Q 006627          356 CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ----GLEV-DVILKTALVDMYAKCGDVNGA  430 (638)
Q Consensus       356 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A  430 (638)
                      ++++|.++|.+.               ...|...+++++|...|.+..+.    +-++ ...+|..+..+|.+.|++++|
T Consensus        32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A   96 (290)
T d1qqea_          32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (290)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence            356677666554               45678899999999999987663    2122 246788889999999999999


Q ss_pred             HHHHHcCCC-----CC----chhHHHHHHHHH-hcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHH
Q 006627          431 YRLFSEAIY-----RD----ICMWNAMMAGYG-MHGCGEEALIFFVDMERS----GVKPN-GITFIGLLNACSHAGLVTE  495 (638)
Q Consensus       431 ~~~~~~~~~-----~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~  495 (638)
                      .+.+++...     .+    ...+..+...|. ..|++++|++.+++..+.    +.++. ..++..+...+...|++++
T Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~  176 (290)
T d1qqea_          97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence            999987541     11    345666666664 469999999999987642    22222 2467888999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627          496 GKSVFDKMVHGLGLVPKI-----EHYGCMVDLLGRAGLLDEAHEMIKSM  539 (638)
Q Consensus       496 a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~  539 (638)
                      |.+.|+++.......+..     ..+...+.++...|+++.|.+.+++.
T Consensus       177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999988632111111     12334444555667777777777766

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.8e-08  Score=74.80  Aligned_cols=107  Identities=14%  Similarity=-0.028  Sum_probs=79.2

Q ss_pred             HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---hhHHHHHHH
Q 006627          482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL---LDEAHEMIKSM-PLRPNM---IVWGALLAA  554 (638)
Q Consensus       482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~~  554 (638)
                      .++..+...+++++|.+.|++...  --+.++.++..+..++.+.++   .++|+++++++ ...|++   .++..+..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456666777788888888888776  334456777777777776544   34577777776 334433   467788899


Q ss_pred             HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      |.+.|++++|+..++++++++|++..+...+..+.-
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999999999999999888877766543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-07  Score=77.89  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627          518 CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW  595 (638)
Q Consensus       518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  595 (638)
                      ..+..+.+.|++++|+..|+++ ...| +...|..+...+...|++++|+..++++++++|++..+|..+|.+|...|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3456788999999999999998 4455 5788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 006627          596 NDVAGVRRVMKEIRV  610 (638)
Q Consensus       596 ~~A~~~~~~~~~~~~  610 (638)
                      ++|...+++..+..+
T Consensus        95 ~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          95 RAALRDYETVVKVKP  109 (159)
T ss_dssp             HHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.3e-07  Score=75.43  Aligned_cols=86  Identities=10%  Similarity=-0.049  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      .+|..+..+|.+.|++++|+..++++ ...| ++.++..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35667888899999999999999887 4455 688899999999999999999999999999999999999999999888


Q ss_pred             cCCHHHHH
Q 006627          592 ANRWNDVA  599 (638)
Q Consensus       592 ~g~~~~A~  599 (638)
                      .+...+..
T Consensus       143 ~~~~~~~e  150 (170)
T d1p5qa1         143 IRRQLARE  150 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.1e-06  Score=72.92  Aligned_cols=113  Identities=10%  Similarity=-0.019  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhc
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLH  558 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  558 (638)
                      .+......+.+.|++++|+..|++.+......+...               +.-......    ....++..+...|.+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~----~~~~~~~nla~~y~k~   75 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQA----LRLASHLNLAMCHLKL   75 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhch----hHHHHHHHHHHHHHhh
Confidence            344455567777777777777777765322111100               000000000    0123556677888999


Q ss_pred             CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |++++|+..++++++++|+++.++..+|.+|...|++++|+..|++..+..+
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999876554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.39  E-value=2.4e-06  Score=70.63  Aligned_cols=93  Identities=15%  Similarity=-0.011  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA  592 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  592 (638)
                      +|..+..+|.+.|++++|+..++++ ...| +..++..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4666788899999999999999887 4344 6888999999999999999999999999999999999999999998888


Q ss_pred             CCHHH-HHHHHHHHhh
Q 006627          593 NRWND-VAGVRRVMKE  607 (638)
Q Consensus       593 g~~~~-A~~~~~~~~~  607 (638)
                      +.+.+ ..+.+..|-+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHh
Confidence            76654 4456666543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.37  E-value=1.2e-06  Score=72.77  Aligned_cols=87  Identities=9%  Similarity=-0.049  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA  590 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  590 (638)
                      ...+..+..++.+.|++++|+..++++ ...| ++.+|..+..++...|++++|+..++++++++|+++.+...+..+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345667778888889999999988887 5556 47788888888999999999999999999999998888888888876


Q ss_pred             hcCCHHHHH
Q 006627          591 VANRWNDVA  599 (638)
Q Consensus       591 ~~g~~~~A~  599 (638)
                      +.....++.
T Consensus       157 ~l~~~~~~~  165 (169)
T d1ihga1         157 KIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5e-07  Score=69.76  Aligned_cols=94  Identities=7%  Similarity=-0.038  Sum_probs=79.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCCC--cchHHHHHHHH
Q 006627          517 GCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQN--YGYNVLMSNIY  589 (638)
Q Consensus       517 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  589 (638)
                      ..++..+...+++++|.+.|++. ...| ++.++..+.+++.+.+   ++++|+..++++++.+|.+  ..++..+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45777888999999999999998 4444 6788999999887654   4567999999999998865  34789999999


Q ss_pred             HhcCCHHHHHHHHHHHhhcCC
Q 006627          590 AVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       590 ~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+.|++++|+++|+++.+..|
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhhHHHHHHHHHHHHhCc
Confidence            999999999999999977554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.35  E-value=4.2e-05  Score=68.59  Aligned_cols=226  Identities=10%  Similarity=-0.082  Sum_probs=130.4

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627          341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTA  416 (638)
Q Consensus       341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (638)
                      +..+..|...+...+++++|++.|++..+.|   +...+..|-..+..    ..+...+...+....+.+          
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----------   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence            4455556666666777777777777766554   22333333333322    334455555554444433          


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH--Hhcc
Q 006627          417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYG----MHGCGEEALIFFVDMERSGVKPNGITFIGLLNA--CSHA  490 (638)
Q Consensus       417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~  490 (638)
                                              +......+...+.    ..++.+.|...++...+.|. +...........  ....
T Consensus        69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~  123 (265)
T d1ouva_          69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVT  123 (265)
T ss_dssp             ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSC
T ss_pred             ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCccc
Confidence                                    1122222222222    13455667777777666652 222211111111  1234


Q ss_pred             CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChH
Q 006627          491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPS  562 (638)
Q Consensus       491 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~  562 (638)
                      .....+...+.....    ..+...+..|...+..    ..+...+..+++......+..+...+...+..    .++++
T Consensus       124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence            456666666666544    2344556666666654    45666777777766334466666666666654    56899


Q ss_pred             HHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 006627          563 MGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|+..|+++.+..  ++..+..||.+|..    ..++++|.++|++.-+.|.
T Consensus       200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            9999999998874  56788899999886    4489999999998876664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-06  Score=68.73  Aligned_cols=92  Identities=13%  Similarity=0.025  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch-------HHHHH
Q 006627          516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY-------NVLMS  586 (638)
Q Consensus       516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~  586 (638)
                      +..++..+.+.|++++|++.|+++ ...| +..++..+..++.+.|++++|+..++++++++|+++..       |..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445677788888888888888777 3344 57788888999999999999999999999999987654       45567


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 006627          587 NIYAVANRWNDVAGVRRVMKE  607 (638)
Q Consensus       587 ~~~~~~g~~~~A~~~~~~~~~  607 (638)
                      .++...+++++|++.|++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            778888899999999987754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.28  E-value=3.2e-06  Score=68.59  Aligned_cols=75  Identities=8%  Similarity=-0.053  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY  589 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  589 (638)
                      +|..+..+|.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..++++++++|+++.+...+..+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4445556666666666666666665 3333 4566666666666666666666666666666666666665555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.1e-07  Score=94.68  Aligned_cols=95  Identities=6%  Similarity=-0.160  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627          513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV  591 (638)
Q Consensus       513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  591 (638)
                      ...+..+...+.+.|+.++|...+++.- .++ ..++..++..+...|++++|+..|+++++++|++...|..||.+|..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             -----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            3455566666666777777666554431 111 24555666677777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHhhc
Q 006627          592 ANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       592 ~g~~~~A~~~~~~~~~~  608 (638)
                      .|++.+|+..|.+....
T Consensus       199 ~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             TTCHHHHHHHHHHHHSS
T ss_pred             cCCHHHHHHHHHHHHhC
Confidence            77777777777766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=3.9e-06  Score=68.05  Aligned_cols=114  Identities=8%  Similarity=-0.076  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhc
Q 006627          479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLH  558 (638)
Q Consensus       479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  558 (638)
                      .+..-...+.+.|++.+|+..|+++.......+...              .........    .....++..+...+.+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKK----NIEISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhh----hHHHHHHhhHHHHHHHh
Confidence            344455566777777777777777665211111000              000000000    00124566788889999


Q ss_pred             CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |++++|+..++++++++|++..+|..+|.+|...|++++|+..|++..+..|
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999998876654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.16  E-value=3.8e-06  Score=69.59  Aligned_cols=112  Identities=13%  Similarity=0.017  Sum_probs=80.1

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhhHHHHHHHHhhc
Q 006627          480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRP-NMIVWGALLAASKLH  558 (638)
Q Consensus       480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~  558 (638)
                      +......+...|++++|++.|+++++.             ...........+.      ....| ....+..+...+.+.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY-------------VEGSRAAAEDADG------AKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------------hhhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence            444555566777777777777766541             0000000111110      01123 345667778889999


Q ss_pred             CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      |++++|+..++++++++|+++.+|..+|.+|...|++++|+..|++..+..+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=5.3e-06  Score=68.90  Aligned_cols=122  Identities=11%  Similarity=0.055  Sum_probs=85.4

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChH
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPS  562 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  562 (638)
                      ........|++++|.+.|.....-+.-.+-..        +...........-++.    -....+..+...+...|+++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence            34566788899999988888876321111000        0000001111111111    12456777888999999999


Q ss_pred             HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCcCCCCe
Q 006627          563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE-----IRVKKEPGF  616 (638)
Q Consensus       563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  616 (638)
                      +|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+     -|+.|.|.+
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            999999999999999999999999999999999999999999854     477766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.13  E-value=1.1e-05  Score=66.46  Aligned_cols=64  Identities=9%  Similarity=0.004  Sum_probs=58.1

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .+..+..++...|++++|+..++++++++|++..++..++.+|...|++++|+..|+++.+..+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4555677888999999999999999999999999999999999999999999999999876544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.08  E-value=0.0022  Score=58.19  Aligned_cols=248  Identities=11%  Similarity=0.028  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHH
Q 006627          315 ALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEM  394 (638)
Q Consensus       315 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  394 (638)
                      .++..+.+.++++.|.+.+.+..  +..+|..+...+.+.....-+     .+.......++.....++..|...|.++.
T Consensus        45 rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          45 RLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHH
Confidence            34444444444444444444322  233444444444444333221     11111222333333444555555555555


Q ss_pred             HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-CC----------chhHHHHHHHHHhcCChHHHHH
Q 006627          395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-RD----------ICMWNAMMAGYGMHGCGEEALI  463 (638)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~A~~  463 (638)
                      ...+++...... +.+...++.++..|++.+ .++..+.+..... -|          ...|..++-.|.+.|+++.|..
T Consensus       118 Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~  195 (336)
T d1b89a_         118 LITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  195 (336)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence            555555443221 334444455555555432 2233333322111 01          1123333444455555555554


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 006627          464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRP  543 (638)
Q Consensus       464 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  543 (638)
                      +.   .++  +|+..-...++..+.+..+.+...++..-....   .|  ...+.++......-+..+.++.+++-    
T Consensus       196 ~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~----  261 (336)
T d1b89a_         196 TM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV----  261 (336)
T ss_dssp             HH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT----
T ss_pred             HH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhc----
Confidence            42   222  333333444455555555555544444444331   12  23344555555555555555555443    


Q ss_pred             CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627          544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR  602 (638)
Q Consensus       544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  602 (638)
                                     ++.......++...+.+  +..++..|.++|...++++.-++..
T Consensus       262 ---------------~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         262 ---------------KQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             ---------------TCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------CCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHHH
Confidence                           34444444444433322  3457778888888888765544433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.05  E-value=0.001  Score=60.42  Aligned_cols=279  Identities=10%  Similarity=0.059  Sum_probs=161.1

Q ss_pred             hhHHHhhhhcCChhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHH
Q 006627           14 RQCHAHIIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEI   93 (638)
Q Consensus        14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~   93 (638)
                      ....+.|.+.|.++.|..++..+.-|..++..+.+.+++..|.+++.+.      -+..+|..+...|........+   
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la---   88 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA---   88 (336)
T ss_dssp             -----------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH---
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH---
Confidence            3566788899999999999999999999999999999999998887654      2456888888888876555432   


Q ss_pred             HHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcC
Q 006627           94 HGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP---NRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRP  170 (638)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  170 (638)
                        .+.......++.....++..|-..|.+++...+++...   ..+...++.++..|++.+ .++..+.   ++..+..-
T Consensus        89 --~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~---l~~~s~~y  162 (336)
T d1b89a_          89 --QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH---LELFWSRV  162 (336)
T ss_dssp             --HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH---HHHHSTTS
T ss_pred             --HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH---HHhccccC
Confidence              22233334566666788888999999999998888643   245667888888888764 3443333   33321111


Q ss_pred             CHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHH
Q 006627          171 SEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGY  250 (638)
Q Consensus       171 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  250 (638)
                      |   ...+++.|...                        ..|..++-.|.+.|+++.|..+.=.-. ++.......+..+
T Consensus       163 ~---~~k~~~~c~~~------------------------~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~  214 (336)
T d1b89a_         163 N---IPKVLRAAEQA------------------------HLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDII  214 (336)
T ss_dssp             C---HHHHHHHHHTT------------------------TCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHH
T ss_pred             C---HHHHHHHHHHc------------------------CChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHH
Confidence            2   22233333322                        233456666777777777766542211 2233344556666


Q ss_pred             HhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHH
Q 006627          251 IRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSAR  330 (638)
Q Consensus       251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  330 (638)
                      .+.++.+...++.....+.  .|+  ..+.++......-+.                      ..++..+.+.+++....
T Consensus       215 ~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~----------------------~r~V~~~~k~~~l~li~  268 (336)
T d1b89a_         215 TKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDH----------------------TRAVNYFSKVKQLPLVK  268 (336)
T ss_dssp             HHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCH----------------------HHHHHHHHHTTCTTTTH
T ss_pred             HccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCH----------------------HHHHHHHHhcCCcHHHH
Confidence            6777766666666555442  232  223333333222222                      22333444455555555


Q ss_pred             HHHhcCCCC-CchhHHHHHHHHHhcCCHHHHH
Q 006627          331 TLFDGMKSK-DVMIWNAVISAYAQAHCIDKAF  361 (638)
Q Consensus       331 ~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~  361 (638)
                      ..++...+. +....+++...|...++++.-.
T Consensus       269 p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         269 PYLRSVQNHNNKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcChHHHHHHHHHHHhCcchhHHHH
Confidence            555554332 3445666777777777755433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.02  E-value=1.7e-05  Score=60.01  Aligned_cols=87  Identities=7%  Similarity=-0.145  Sum_probs=44.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627          449 MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL  528 (638)
Q Consensus       449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  528 (638)
                      ...+.+.|++++|+..+++..... +-+...|..+..++.+.|++++|+..++++.+  -.+.+...+..+..+|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence            334445555555555555555542 22345555555555555555555555555554  222234445555555555555


Q ss_pred             hHHHHHHHHh
Q 006627          529 LDEAHEMIKS  538 (638)
Q Consensus       529 ~~~A~~~~~~  538 (638)
                      +++|.+.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.95  E-value=0.0033  Score=55.62  Aligned_cols=95  Identities=11%  Similarity=-0.096  Sum_probs=65.6

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHH
Q 006627          309 SLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLL  383 (638)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  383 (638)
                      |+..+..|...+...+++++|.+.|++..+. +...+..|...|..    ..+...|...+......+..   .....+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence            3456677778888899999999999987643 56666667777765    56888899998887766522   2222222


Q ss_pred             HH----HhccCchHHHHHHHHHHHHhC
Q 006627          384 SL----CTEAGALEMGKWLHTYIEKQG  406 (638)
Q Consensus       384 ~~----~~~~~~~~~a~~~~~~~~~~~  406 (638)
                      ..    .....+.+.|...++...+.|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh
Confidence            22    223557778888888777766

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=4e-06  Score=67.12  Aligned_cols=128  Identities=11%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----------cHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG----------LVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      |-+.+.+++|...++...+.. |.+...+..+..+|...+          .+++|+..|+++++  --+.+...|..++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence            344556777777777777663 445566666666665432          23455555555543  11223344444444


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627          522 LLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV  601 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  601 (638)
                      +|...|+..            ++..         ...+++++|.+.|+++++++|++...+..|+.+.       +|.++
T Consensus        84 ~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~  135 (145)
T d1zu2a1          84 AYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL  135 (145)
T ss_dssp             HHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred             HHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHH
Confidence            444333210            0100         0112468899999999999999987777776664       55666


Q ss_pred             HHHHhhcCC
Q 006627          602 RRVMKEIRV  610 (638)
Q Consensus       602 ~~~~~~~~~  610 (638)
                      +.+..++|+
T Consensus       136 ~~e~~k~~~  144 (145)
T d1zu2a1         136 HAEAYKQGL  144 (145)
T ss_dssp             HHHHHHSSS
T ss_pred             HHHHHHHhc
Confidence            666666554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.9e-05  Score=57.60  Aligned_cols=74  Identities=9%  Similarity=-0.008  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627          515 HYGCMVDLLGRAGLLDEAHEMIKSM----P----LRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM  585 (638)
Q Consensus       515 ~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  585 (638)
                      ....++..+.+.|++++|..+|+++    +    ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3345666677777777777777665    1    1222 46788899999999999999999999999999998888877


Q ss_pred             HHH
Q 006627          586 SNI  588 (638)
Q Consensus       586 ~~~  588 (638)
                      +..
T Consensus        87 ~~~   89 (95)
T d1tjca_          87 KYF   89 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.6e-05  Score=58.28  Aligned_cols=93  Identities=8%  Similarity=-0.062  Sum_probs=48.2

Q ss_pred             HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---C-----HhhHHHHHH
Q 006627          483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---N-----MIVWGALLA  553 (638)
Q Consensus       483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-----~~~~~~l~~  553 (638)
                      +...+...|++++|+..|++.++.  .+.+...+..+..+|.+.|++++|++.++++ ...|   .     ..++..+..
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            334444455555555555554431  2223444444555555555555555555443 1111   1     124445556


Q ss_pred             HHhhcCChHHHHHHHHHHhccCCC
Q 006627          554 ASKLHKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       554 ~~~~~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .+...+++++|+..+++++..+|+
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Confidence            666777777777777777776665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.82  E-value=3.8e-05  Score=62.24  Aligned_cols=63  Identities=10%  Similarity=-0.090  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627          546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQN-----------YGYNVLMSNIYAVANRWNDVAGVRRVMKEI  608 (638)
Q Consensus       546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  608 (638)
                      ..|..+..++...|++++|...+++++++.|..           ..++..+|.+|...|++++|.+.|++..+.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456667777788888888888888887654421           235788999999999999999999997653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=8.9e-06  Score=64.99  Aligned_cols=52  Identities=10%  Similarity=-0.003  Sum_probs=44.2

Q ss_pred             CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC-----------HHHHHHHHHHHhhcCC
Q 006627          559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR-----------WNDVAGVRRVMKEIRV  610 (638)
Q Consensus       559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~  610 (638)
                      +.+++|+..++++++++|+++.+|..+|.+|...|+           +++|.+.|++..+-.+
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            346789999999999999999999999999988764           6888888888765443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.2e-05  Score=55.68  Aligned_cols=67  Identities=9%  Similarity=-0.109  Sum_probs=57.1

Q ss_pred             HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-------YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                      ...+..++..+.+.|+++.|+..+++++++.|.+       +.++..||.+|.+.|++++|+..++++.+..|.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            3445678889999999999999999999876654       356889999999999999999999999876554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.67  E-value=5.2e-05  Score=67.10  Aligned_cols=51  Identities=8%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627          454 MHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH  505 (638)
Q Consensus       454 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  505 (638)
                      +.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455666666666655542 33445555666666666666666666666553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.55  E-value=4.4e-05  Score=67.60  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=89.1

Q ss_pred             HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHH
Q 006627          487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMG  564 (638)
Q Consensus       487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A  564 (638)
                      ..+.|++++|+..+++.++  ..+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4578999999999999997  55667899999999999999999999999998 55675 44444454444433333333


Q ss_pred             HHHHHHHhc-cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          565 EIAATQILE-IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       565 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .....+... .+|++...+...+.++...|++++|.+.++++.+..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            222222111 3455555667778889999999999999999876554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=0.00051  Score=56.52  Aligned_cols=99  Identities=7%  Similarity=-0.078  Sum_probs=66.1

Q ss_pred             chHhhhhHH---HhhhhcCChhHHHHhhhhh------------------------------hcHHHHHHHHHhCCCchhH
Q 006627            9 NLEQTRQCH---AHIIKTHFKFSYTNIINPL------------------------------TRYNSLVTSYIKNNKPSSA   55 (638)
Q Consensus         9 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~~------------------------------~~~~~ll~~~~~~~~~~~a   55 (638)
                      |+..+..+.   ......|++++|.+.|...                              ..+..+...+...|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            444444443   4677889999998888775                              3455666667777777777


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHH-----HhCCCCChhH
Q 006627           56 LNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI-----KNGLDGDAYV  108 (638)
Q Consensus        56 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  108 (638)
                      +..++++.+.. +-+...|..++.++...|+..+|.+.|+...     +.|+.|+..+
T Consensus        87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            77777776654 4455667777777777777777777776653     3466666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.2e-05  Score=75.48  Aligned_cols=105  Identities=10%  Similarity=-0.092  Sum_probs=40.5

Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CC-CchhHHHHHHHHHhc
Q 006627          379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YR-DICMWNAMMAGYGMH  455 (638)
Q Consensus       379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~  455 (638)
                      +..+...+.+.|+.+.|...+.......   ....+..+...+...|++++|...|++..  .| +...|+.|...+...
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            3333444444555555554444333211   11334445555555555555555555443  22 334555555555555


Q ss_pred             CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627          456 GCGEEALIFFVDMERSGVKPNGITFIGLLNAC  487 (638)
Q Consensus       456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  487 (638)
                      |+..+|+..|.+..... +|-..++..|...+
T Consensus       200 ~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             TCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            55555555555555443 34444444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.46  E-value=0.00037  Score=56.10  Aligned_cols=94  Identities=12%  Similarity=-0.011  Sum_probs=60.4

Q ss_pred             HHhccCcHHHHHHHHHHHhhhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC---
Q 006627          486 ACSHAGLVTEGKSVFDKMVHGLGLVPK----------IEHYGCMVDLLGRAGLLDEAHEMIKSM--------PLRPN---  544 (638)
Q Consensus       486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---  544 (638)
                      .+...|++++|++.|++.++-..-.|+          ...|+.+..+|...|++++|++.+++.        ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666666542221121          234666667777777777777666654        11222   


Q ss_pred             --HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627          545 --MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY  579 (638)
Q Consensus       545 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  579 (638)
                        ...+..+..++...|++++|+..|++++++.|+..
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence              23466778889999999999999999999877543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.15  Score=48.49  Aligned_cols=55  Identities=7%  Similarity=-0.054  Sum_probs=31.5

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006627          316 LVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK  371 (638)
Q Consensus       316 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  371 (638)
                      .+..+.+.++++.....+..-+ .+...-.....+....|+.+.|...+..+-..|
T Consensus        78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1          78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            3445566677766665554322 133334455666677777777777766654443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0031  Score=46.79  Aligned_cols=71  Identities=11%  Similarity=-0.099  Sum_probs=33.9

Q ss_pred             ChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-C-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627          512 KIEHYGCMVDLLGRAG---LLDEAHEMIKSM-PLRP-N-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN  582 (638)
Q Consensus       512 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  582 (638)
                      ++.+--.+..++.++.   +.++++.++++. ...| + ...+..+.-+|.+.|+++.|+..++++++++|++..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            3334444444554443   233455555544 1122 2 23444455555555555555555555555555554443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.30  E-value=0.11  Score=37.67  Aligned_cols=141  Identities=11%  Similarity=-0.016  Sum_probs=97.5

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627          452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE  531 (638)
Q Consensus       452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  531 (638)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+-..++++..-+-+.+.|- .....++.++.+.+.   
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~---   84 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT---   84 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc---
Confidence            34567888888888887764   23444556665555666777778888877653333221 122334444444433   


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627          532 AHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK  611 (638)
Q Consensus       532 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  611 (638)
                                  +...+...+.....+|.-++-..+++.+++-+.-+|+...-++.+|.+.|...++.+++.+.=+.|.+
T Consensus        85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                        34455556677788899999999999988866667889999999999999999999999998877764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.021  Score=43.80  Aligned_cols=82  Identities=2%  Similarity=-0.190  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHH
Q 006627          527 GLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDV  598 (638)
Q Consensus       527 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A  598 (638)
                      .+.++|.+++++.-..-++.....+...|..    ..|.++|...++++.+..  ++.....|+.+|..    ..+.++|
T Consensus        37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence            3445555555544112233344444444432    346778888888877653  45667778887776    5678888


Q ss_pred             HHHHHHHhhcCC
Q 006627          599 AGVRRVMKEIRV  610 (638)
Q Consensus       599 ~~~~~~~~~~~~  610 (638)
                      .++|++.-+.|.
T Consensus       115 ~~~~~~Aa~~G~  126 (133)
T d1klxa_         115 VKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            888888766654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.045  Score=40.37  Aligned_cols=69  Identities=6%  Similarity=-0.119  Sum_probs=53.0

Q ss_pred             CCCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627          542 RPNMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQNY-GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV  610 (638)
Q Consensus       542 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  610 (638)
                      .|...+...+.++..+..   +.++|+.+++++.+.+|.+. ..+..|+-+|++.|+|++|+++++++.+..+
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            356667777777777654   45688888888888888654 6778888889999999999998888876554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.37  E-value=0.31  Score=35.38  Aligned_cols=140  Identities=9%  Similarity=0.028  Sum_probs=89.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHH
Q 006627          351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ-GLEVDVILKTALVDMYAKCGDVNG  429 (638)
Q Consensus       351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  429 (638)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+...+.++.+-+. ++.|-. -...++.++...+..  
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~~--   85 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNTL--   85 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTCC--
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcch--
Confidence            44567778888888777653   34455666665555555555555555554331 111111 123344455544432  


Q ss_pred             HHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627          430 AYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL  509 (638)
Q Consensus       430 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  509 (638)
                                  ...++..+..+...|+-++..++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus        86 ------------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~  151 (161)
T d1wy6a1          86 ------------NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE  151 (161)
T ss_dssp             ------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred             ------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence                        2334455677788888888888888877765 888888888899999999999999998888775 65


Q ss_pred             C
Q 006627          510 V  510 (638)
Q Consensus       510 ~  510 (638)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=1.5  Score=41.07  Aligned_cols=353  Identities=9%  Similarity=-0.015  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCc-cCChHhHHHHHHHhcccC
Q 006627          211 IATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENV-FPSEITILSLIIECGFVG  289 (638)
Q Consensus       211 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~  289 (638)
                      .....+..+.+.++++.....+..-+ .+...-.....+....|+...|.+.+..+-..|. .|+               
T Consensus        74 lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~---------------  137 (450)
T d1qsaa1          74 LQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN---------------  137 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT---------------
T ss_pred             HHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch---------------
Confidence            33445666777888877776654322 2334445667788888999888888877765542 222               


Q ss_pred             ChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006627          290 GLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKV  369 (638)
Q Consensus       290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  369 (638)
                         ....++..+.+.| .++...+-.-+......|+...|..+...+...........+.....   ...+.....   .
T Consensus       138 ---~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~  207 (450)
T d1qsaa1         138 ---ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T  207 (450)
T ss_dssp             ---HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H
T ss_pred             ---HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c
Confidence               2223444444443 23333444455566677889999998888765544444555544332   222222221   1


Q ss_pred             cCcCCChhhHHHHHHHHhc--cCchHHHHHHHHHHHHhCCCCcccHHHHHHH----HHHhcCCHHHHHHHHHcCC--CCC
Q 006627          370 SKVRPNEVTMVGLLSLCTE--AGALEMGKWLHTYIEKQGLEVDVILKTALVD----MYAKCGDVNGAYRLFSEAI--YRD  441 (638)
Q Consensus       370 ~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~--~~~  441 (638)
                        ..++......+..++.+  ..+.+.+...+....... ..+..-...+-.    .+...+..+.+...+....  ..+
T Consensus       208 --~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~  284 (450)
T d1qsaa1         208 --TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS  284 (450)
T ss_dssp             --SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC
T ss_pred             --CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc
Confidence              12233333333333333  346777888877776643 222222222222    2223455666766665443  223


Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      .....-.+......+++..+...+..|-.. ......-..-+..++...|+.+.|..+|..+..    .++  .|..|. 
T Consensus       285 ~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LA-  356 (450)
T d1qsaa1         285 TSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVA-  356 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHH-
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHH-
Confidence            333333444556678888888888876432 122334456677888899999999999998864    243  233222 


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCHh----hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 006627          522 LLGRAGLLDEAHEMIKSMPLRPNMI----VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWND  597 (638)
Q Consensus       522 ~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  597 (638)
                       ..+.|..-.. . ....+..+...    .-...+......|....|...+..+.+..  ++.-...++.+..+.|.++.
T Consensus       357 -a~~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~  431 (450)
T d1qsaa1         357 -AQRIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDL  431 (450)
T ss_dssp             -HHHTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHH
T ss_pred             -HHHcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhH
Confidence             1222321000 0 00001111110    11122345668899999999999887643  35567788999999999999


Q ss_pred             HHHHHHHH
Q 006627          598 VAGVRRVM  605 (638)
Q Consensus       598 A~~~~~~~  605 (638)
                      |+....+.
T Consensus       432 aI~a~~~~  439 (450)
T d1qsaa1         432 SVQATIAG  439 (450)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99887765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.53  E-value=0.28  Score=37.03  Aligned_cols=112  Identities=10%  Similarity=-0.073  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 006627          457 CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEA  532 (638)
Q Consensus       457 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  532 (638)
                      |+++|++.|++..+.| .|..  ...+  +.....+.++|.+++++..+. |   ++.....|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g-~~~a--~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELN-EMFG--CLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTH--HHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCC-Chhh--hhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence            5677888888877776 3322  2222  234456778888888887763 3   33444555555543    4577888


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCC
Q 006627          533 HEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQ  577 (638)
Q Consensus       533 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~  577 (638)
                      .++|++.-..-++.....|...|..    ..|.++|...++++.++...
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            8888887223345555566666654    45788899999988876543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.99  E-value=1.6  Score=29.93  Aligned_cols=60  Identities=13%  Similarity=0.136  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627          460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD  521 (638)
Q Consensus       460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  521 (638)
                      ++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+  ..++...|..+++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq   83 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            45555666666778889988999999999999999999999888764  3334556665553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.62  E-value=1.7  Score=29.70  Aligned_cols=62  Identities=11%  Similarity=-0.019  Sum_probs=37.8

Q ss_pred             chhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627           52 PSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ  114 (638)
Q Consensus        52 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  114 (638)
                      .-++..-++.+.....-|++....+.|++|.+.+|+..|.++++.++... .++...|..+++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            33444445555556666777777777777777777777777777766443 233445554443